Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNTN1_chr12_40687439_41077415	40690758	TATTTTAT others(7): Show TATTTTATTTTATTA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0057 a0001c0004t0007g0057	1	230	0.0044	-14	c.-19 others(25): Show c.-1910_-1897delATTTTATTTTATTA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		1680		chr12	TogoVar
CNTN1_chr12_40687439_41077415	40707046	GCACACAC others(7): Show GCACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG00408.hp2 others(78): Show HG00140.hp2 HG00323.hp1 HG00408.hp2 HG00621.hp2 HG00673.hp2 HG00733.hp1 HG00735.hp1 HG00738.hp2 HG01069.hp1 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01167.hp2 HG01169.hp2 HG01175.hp2 HG01256.hp2 HG01258.hp2 HG01496.hp1 HG01981.hp2 HG02015.hp2 HG02027.hp1 HG02055.hp2 HG02071.hp1 HG02083.hp1 HG02109.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02818.hp1 HG02976.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp2 HG03516.hp1 HG03540.hp2 HG03704.hp1 HG03834.hp2 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18944.hp2 NA18950.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18959.hp2 NA18961.hp1 NA18964.hp1 NA18964.hp2 NA18970.hp2 NA18973.hp2 NA18974.hp1 NA18977.hp2 NA18980.hp2 NA18983.hp2 NA18988.hp1 NA18989.hp1 NA19006.hp1 NA19010.hp1 NA19011.hp1 NA19030.hp1 NA19065.hp1 NA19066.hp2 NA19079.hp2 NA19083.hp1 NA19090.hp2 NA19091.hp1 NA19240.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0012 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0010 a0001c0002t0023 a0001c0003t0002 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0020 a0001c0005t0002 a0001c0005t0007 a0001c0005t0025 a0001c0006t0006 a0001c0012t0021 a0002c0007t0008	a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0107 others(78): Show a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0114 a0001c0001t0001g0160 a0001c0001t0001g0223 a0001c0001t0001g0229 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0220 a0001c0001t0003g0084 a0001c0001t0003g0154 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0054 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0006g0106 a0001c0001t0012g0125 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0002t0001g0001 a0001c0002t0001g0085 a0001c0002t0001g0088 a0001c0002t0001g0092 a0001c0002t0001g0099 a0001c0002t0001g0102 a0001c0002t0001g0103 a0001c0002t0001g0109 a0001c0002t0001g0111 a0001c0002t0001g0112 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0149 a0001c0002t0001g0156 a0001c0002t0001g0157 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0163 a0001c0002t0001g0164 a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0002g0221 a0001c0002t0004g0117 a0001c0002t0005g0098 a0001c0002t0010g0126 a0001c0002t0023g0144 a0001c0003t0002g0108 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0020g0165 a0001c0005t0002g0053 a0001c0005t0002g0081 a0001c0005t0002g0207 a0001c0005t0007g0148 a0001c0005t0025g0052 a0001c0006t0006g0051 a0001c0012t0021g0204 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	81	230	0.3522	-14	c.-77 others(33): Show c.-77+14484_-77+14497delACACACACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40755190	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(139): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG00741.hp1 HG01069.hp1 HG01074.hp2 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01175.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp2 HG01496.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp2 HG02027.hp2 HG02055.hp2 HG02071.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp2 HG02148.hp1 HG02148.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02300.hp1 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02976.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp2 HG03486.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03654.hp1 HG03704.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18944.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18957.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18964.hp1 NA18964.hp2 NA18970.hp1 NA18970.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp1 NA18977.hp1 NA18977.hp2 NA18980.hp1 NA18980.hp2 NA18983.hp2 NA18984.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp1 NA19006.hp1 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19043.hp2 NA19062.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19079.hp1 NA19079.hp2 NA19083.hp1 NA19083.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0012 a0002c0007 a0003c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(32): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0024 a0001c0001t0026 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0010 a0001c0002t0022 a0001c0002t0023 a0001c0003t0002 a0001c0003t0005 a0001c0003t0011 a0001c0003t0016 a0001c0003t0020 a0001c0004t0003 a0001c0005t0002 a0001c0005t0007 a0001c0005t0025 a0001c0006t0006 a0001c0012t0021 a0002c0007t0008 a0003c0008t0002	a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 others(139): Show a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0114 a0001c0001t0001g0118 a0001c0001t0001g0152 a0001c0001t0001g0188 a0001c0001t0001g0201 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0001g0223 a0001c0001t0001g0228 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0002g0220 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0120 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0054 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0184 a0001c0001t0004g0216 a0001c0001t0004g0225 a0001c0001t0005g0135 a0001c0001t0006g0106 a0001c0001t0006g0138 a0001c0001t0006g0139 a0001c0001t0006g0140 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0010g0202 a0001c0001t0012g0125 a0001c0001t0013g0133 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0001t0024g0167 a0001c0001t0026g0190 a0001c0002t0001g0083 a0001c0002t0001g0085 a0001c0002t0001g0088 a0001c0002t0001g0089 a0001c0002t0001g0090 a0001c0002t0001g0092 a0001c0002t0001g0099 a0001c0002t0001g0102 a0001c0002t0001g0103 a0001c0002t0001g0109 a0001c0002t0001g0111 a0001c0002t0001g0112 a0001c0002t0001g0116 a0001c0002t0001g0121 a0001c0002t0001g0124 a0001c0002t0001g0129 a0001c0002t0001g0132 a0001c0002t0001g0136 a0001c0002t0001g0142 a0001c0002t0001g0145 a0001c0002t0001g0147 a0001c0002t0001g0149 a0001c0002t0001g0156 a0001c0002t0001g0157 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0163 a0001c0002t0001g0164 a0001c0002t0001g0169 a0001c0002t0001g0174 a0001c0002t0001g0189 a0001c0002t0001g0194 a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0002t0001g0205 a0001c0002t0002g0221 a0001c0002t0004g0117 a0001c0002t0005g0098 a0001c0002t0010g0126 a0001c0002t0010g0127 a0001c0002t0022g0172 a0001c0002t0023g0144 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0016g0226 a0001c0003t0020g0165 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0005t0002g0053 a0001c0005t0002g0081 a0001c0005t0002g0173 a0001c0005t0002g0207 a0001c0005t0002g0210 a0001c0005t0007g0148 a0001c0005t0025g0052 a0001c0006t0006g0051 a0001c0006t0006g0119 a0001c0012t0021g0204 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192 a0003c0008t0002g0143	142	230	0.6174	-14	c.-77 others(33): Show c.-77+62621_-77+62634delAAAAAAAAAAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40773644	TATATATA others(7): Show TATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0106 a0001c0001t0006g0106	1	230	0.0044	-14	c.-77 others(33): Show c.-77+81064_-77+81077delCACATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40795274	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0113 a0001c0001t0002g0113	1	230	0.0044	-14	c.-77 others(35): Show c.-77+102714_-77+102727delCACACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40872208	TTGTTTGT others(7): Show TTGTTTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02572.hp1 NA19240.hp1 HG02572.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0015 a0001c0001t0014 a0001c0001t0015	a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0014g0185 a0001c0001t0015g0219	2	230	0.0087	-14	c.-76 others(33): Show c.-76-36145_-76-36132delTTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40925820	ATATATAT others(7): Show ATATATATATGTATG	A A	intron_variant intron_variant	MODIFIER	HG03486.hp1 NA18522.hp1 HG03486.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0006 a0001c0001t0007g0058 a0001c0001t0007g0006 a0001c0001t0007g0058	2	230	0.0087	-14	c.496 others(31): Show c.496+1170_496+1183delATATATATGTATGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947774	TATATATA others(7): Show TATATATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0226 a0001c0003t0016g0226	1	230	0.0044	-14	c.168 others(33): Show c.1683+3606_1683+3619delTATATATACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40950097	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00621.hp1 HG00673.hp1 others(79): Show HG00438.hp2 HG00621.hp1 HG00673.hp1 HG00733.hp2 HG00735.hp1 HG00738.hp2 HG01069.hp1 HG01070.hp2 HG01074.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01167.hp1 HG01169.hp1 HG01255.hp2 HG01496.hp2 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02109.hp1 HG02109.hp2 HG02148.hp1 HG02257.hp1 HG02273.hp2 HG02280.hp2 HG02486.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02717.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02976.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04115.hp2 NA18747.hp2 NA18943.hp1 NA18944.hp2 NA18952.hp1 NA18953.hp1 NA18953.hp2 NA18957.hp2 NA18959.hp1 NA18959.hp2 NA18961.hp2 NA18964.hp1 NA18964.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18974.hp2 NA18977.hp1 NA18980.hp1 NA18983.hp2 NA18989.hp2 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19011.hp2 NA19030.hp1 NA19062.hp1 NA19066.hp1 NA19079.hp1 NA19083.hp2 NA19090.hp1 NA19091.hp1 NA19240.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0002c0007 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0024 a0001c0001t0026 a0001c0002t0001 a0001c0003t0003 a0001c0003t0005 a0001c0003t0019 a0001c0003t0020 a0001c0005t0002 a0002c0007t0008 a0004c0011t0001	a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0001g0043 others(79): Show a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0063 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0118 a0001c0001t0001g0160 a0001c0001t0001g0177 a0001c0001t0001g0201 a0001c0001t0001g0208 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0067 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0180 a0001c0001t0002g0220 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0029 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0086 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0001t0004g0134 a0001c0001t0004g0137 a0001c0001t0004g0170 a0001c0001t0004g0179 a0001c0001t0004g0184 a0001c0001t0004g0216 a0001c0001t0004g0225 a0001c0001t0005g0020 a0001c0001t0005g0135 a0001c0001t0006g0106 a0001c0001t0007g0055 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0010g0202 a0001c0001t0013g0133 a0001c0001t0014g0074 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0001t0024g0167 a0001c0001t0026g0190 a0001c0002t0001g0090 a0001c0003t0003g0061 a0001c0003t0005g0104 a0001c0003t0019g0056 a0001c0003t0020g0165 a0001c0005t0002g0081 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192 a0004c0011t0001g0097	82	230	0.3565	-14	c.168 others(33): Show c.1683+5960_1683+5973delGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	TTATATAT others(7): Show TTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00642.hp1 others(34): Show HG00280.hp1 HG00323.hp1 HG00642.hp1 HG00738.hp2 HG01099.hp1 HG01109.hp2 HG01169.hp1 HG01361.hp1 HG01515.hp2 HG01517.hp1 HG02055.hp1 HG02055.hp2 HG02071.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp1 HG02976.hp1 HG03139.hp1 HG03195.hp2 HG03239.hp1 HG03540.hp1 HG03834.hp2 HG03927.hp1 NA18953.hp1 NA18964.hp2 NA18972.hp2 NA19007.hp2 NA19079.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0014 a0001c0001t0015 a0001c0001t0026 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0019 a0001c0004t0007 a0001c0005t0007 a0002c0007t0008	a0001c0001t0001g0095 a0001c0001t0002g0045 a0001c0001t0002g0096 others(34): Show a0001c0001t0001g0095 a0001c0001t0002g0045 a0001c0001t0002g0096 a0001c0001t0002g0158 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0004g0054 a0001c0001t0004g0184 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0014g0074 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0026g0190 a0001c0003t0003g0061 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0011g0227 a0001c0003t0019g0056 a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0005t0007g0148 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	37	230	0.1609	-14	c.180 others(33): Show c.1805-5699_1805-5686delATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40978338	TCATATCA others(7): Show TCATATCAGTGGAAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02559.hp1 HG02895.hp2 others(6): Show HG01884.hp2 HG02559.hp1 HG02895.hp2 HG02897.hp1 HG03041.hp1 HG03098.hp2 HG03209.hp2 NA19030.hp2 NA19043.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 others(1): Show a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0007	a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 others(6): Show a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0004t0007g0057 a0001c0004t0007g0213 a0001c0004t0007g0214	9	230	0.0391	-14	c.180 others(33): Show c.1805-2567_1805-2554delATCAGTGGAACCAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41051893	AACACACA others(7): Show AACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp2 others(40): Show HG00140.hp2 HG00280.hp2 HG00408.hp2 HG00741.hp1 HG01070.hp1 HG01074.hp2 HG01123.hp2 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02145.hp1 HG02145.hp2 HG02280.hp2 HG02818.hp2 HG02895.hp1 HG03225.hp2 HG03239.hp1 HG03516.hp1 HG03704.hp1 HG03927.hp1 HG04115.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp2 NA18953.hp2 NA18970.hp1 NA18974.hp2 NA18983.hp2 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19012.hp1 NA19062.hp1 NA19079.hp1 NA19083.hp1 NA19090.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0012 a0001c0001t0018 a0001c0002t0002 a0001c0004t0002 a0001c0005t0002 a0001c0005t0025 a0005c0010t0002	a0001c0001t0001g0101 a0001c0001t0002g0005 a0001c0001t0002g0011 others(40): Show a0001c0001t0001g0101 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0059 a0001c0001t0002g0067 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0220 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0018g0048 a0001c0002t0002g0221 a0001c0004t0002g0008 a0001c0005t0002g0053 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0001c0005t0002g0207 a0001c0005t0002g0210 a0001c0005t0025g0052 a0005c0010t0002g0026	43	230	0.1870	-14	c.298 others(35): Show c.2981-18032_2981-18019delCACACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41053428	AATATATA others(7): Show AATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02273.hp1 HG02273.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0006 a0001c0006t0006	a0001c0006t0006g0051 a0001c0006t0006g0051	1	230	0.0044	-14	c.298 others(35): Show c.2981-16504_2981-16491delATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN2_chr1_205038212_205083289	205048910	CGTGTGTG others(7): Show CGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03492.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0130 a0003c0003t0001g0130	1	380	0.0026	-14	c.-86 others(31): Show c.-86-4153_-86-4140delGTGTGTGTGTGTGT	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205067927	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02895.hp2 HG02897.hp2 others(1): Show HG01192.hp1 HG02895.hp2 HG02897.hp2 HG03453.hp2	a0003 a0012 a0003 a0012	a0003c0013 a0012c0020 a0003c0013 a0012c0020	a0003c0013t0014 a0012c0020t0014 a0003c0013t0014 a0012c0020t0014	a0003c0013t0014g0037 a0003c0013t0014g0136 a0012c0020t0014g0109 a0003c0013t0014g0037 a0003c0013t0014g0136 a0012c0020t0014g0109	4	380	0.0105	-14	c.212 others(31): Show c.2125+692_2125+705delAAAAAAAAAAAAAA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	16/22		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATATA others(7): Show GATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0016 a0001c0002t0003g0055 a0001c0002t0003g0016 a0001c0002t0003g0055	2	174	0.0115	-14	c.251 others(31): Show c.2518-313_2518-300delATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74344397	GTTTTTTT others(7): Show GTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0156 a0001c0001t0005g0156	1	174	0.0058	-14	c.136 others(33): Show c.1365-7753_1365-7740delAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74460772	CATATATA others(7): Show CATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01884.hp1 HG02055.hp1 others(4): Show HG01261.hp1 HG01884.hp1 HG02055.hp1 HG02257.hp2 HG02896.hp1 HG03098.hp1 HG03540.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0005 a0003c0021 a0001c0001 a0002c0005 a0003c0021	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0002c0005t0002 a0003c0021t0003	a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0003g0067 others(4): Show a0001c0001t0002g0082 a0001c0001t0002g0083 a0001c0001t0003g0067 a0001c0001t0009g0084 a0001c0001t0009g0086 a0002c0005t0002g0037 a0003c0021t0003g0048	7	174	0.0402	-14	c.358 others(33): Show c.358+25670_358+25683delATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74479263	AATTCGAC others(7): Show AATTCGACCCATAAC	A A	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp1 HG01261.hp2 others(31): Show HG01167.hp1 HG01169.hp1 HG01261.hp2 HG02015.hp1 HG02055.hp1 HG02109.hp2 HG02257.hp1 HG02280.hp1 HG02293.hp2 HG02451.hp1 HG02615.hp1 HG02622.hp1 HG02647.hp1 HG02647.hp2 HG02809.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG03041.hp2 HG03209.hp1 HG03486.hp1 HG03540.hp1 HG03669.hp2 NA18906.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19068.hp2 NA19074.hp1 NA19240.hp1 NA19240.hp2 NA20300.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0006 others(6): Show a0001c0001 a0001c0002 a0001c0006 a0001c0019 a0002c0004 a0002c0005 a0003c0003 a0003c0007 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0011 a0001c0001t0015 a0001c0001t0017 a0001c0002t0002 a0001c0002t0003 a0001c0002t0006 a0001c0002t0007 a0001c0002t0010 a0001c0002t0014 a0001c0002t0019 a0001c0006t0006 a0001c0019t0016 a0002c0004t0004 a0002c0004t0028 a0002c0005t0023 a0003c0003t0002 a0003c0003t0005 a0003c0003t0007 a0003c0003t0012 a0003c0003t0024 a0003c0007t0002 a0004c0011t0002	a0001c0001t0001g0108 a0001c0001t0001g0139 a0001c0001t0002g0083 others(31): Show a0001c0001t0001g0108 a0001c0001t0001g0139 a0001c0001t0002g0083 a0001c0001t0003g0017 a0001c0001t0004g0090 a0001c0001t0004g0136 a0001c0001t0008g0001 a0001c0001t0011g0009 a0001c0001t0015g0014 a0001c0001t0017g0171 a0001c0002t0002g0070 a0001c0002t0003g0058 a0001c0002t0006g0167 a0001c0002t0007g0018 a0001c0002t0010g0004 a0001c0002t0014g0076 a0001c0002t0019g0002 a0001c0006t0006g0168 a0001c0019t0016g0135 a0002c0004t0004g0095 a0002c0004t0028g0137 a0002c0005t0023g0032 a0003c0003t0002g0033 a0003c0003t0002g0035 a0003c0003t0002g0036 a0003c0003t0002g0079 a0003c0003t0005g0161 a0003c0003t0007g0020 a0003c0003t0007g0034 a0003c0003t0012g0012 a0003c0003t0024g0075 a0003c0007t0002g0041 a0004c0011t0002g0045 a0004c0011t0002g0071	34	174	0.1954	-14	c.358 others(31): Show c.358+7179_358+7192delGTTATGGGTCGAAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2190821	CACACACA others(7): Show CACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0076 a0001c0004t0002g0076	1	116	0.0086	-14	c.-14 others(35): Show c.-145+90198_-145+90211delCACACACACACATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2192800	ACCACTAT others(7): Show ACCACTATTAGCTCC	A A	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	116	0.0086	-14	c.-14 others(35): Show c.-145+92170_-145+92183delAGCTCCCCACTATT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2300560	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG03139.hp2 HG03453.hp2 HG02602.hp2 HG03139.hp2 HG03453.hp2	a0001 a0001	a0001c0002 a0001c0006 a0001c0007 a0001c0002 a0001c0006 a0001c0007	a0001c0002t0001 a0001c0006t0002 a0001c0007t0004 a0001c0002t0001 a0001c0006t0002 a0001c0007t0004	a0001c0002t0001g0088 a0001c0006t0002g0060 a0001c0007t0004g0066 a0001c0002t0001g0088 a0001c0006t0002g0060 a0001c0007t0004g0066	3	116	0.0259	-14	c.-14 others(35): Show c.-144-38601_-144-38588delTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2326485	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02809.hp2 HG01175.hp1 HG02809.hp2	a0001 a0003 a0001 a0003	a0001c0010 a0003c0019 a0001c0010 a0003c0019	a0001c0010t0003 a0003c0019t0002 a0001c0010t0003 a0003c0019t0002	a0001c0010t0003g0077 a0003c0019t0002g0031 a0001c0010t0003g0077 a0003c0019t0002g0031	2	116	0.0172	-14	c.-14 others(35): Show c.-144-12663_-144-12650delCACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2600005	CTTCTTTT others(7): Show CTTCTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03041.hp1 HG03471.hp1 others(1): Show HG02886.hp1 HG03041.hp1 HG03471.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0003 a0001c0005t0009 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0005t0009 a0001c0005t0010	a0001c0001t0001g0033 a0001c0001t0003g0095 a0001c0005t0009g0091 others(1): Show a0001c0001t0001g0033 a0001c0001t0003g0095 a0001c0005t0009g0091 a0001c0005t0010g0085	4	116	0.0345	-14	c.55+ others(31): Show c.55+28450_55+28463delCTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2782465	CTGTGTGT others(7): Show CTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02818.hp2 HG01891.hp1 HG02818.hp2	a0001 a0001	a0001c0002 a0001c0013 a0001c0002 a0001c0013	a0001c0002t0001 a0001c0013t0007 a0001c0002t0001 a0001c0013t0007	a0001c0002t0001g0029 a0001c0013t0007g0056 a0001c0002t0001g0029 a0001c0013t0007g0056	2	116	0.0172	-14	c.358 others(33): Show c.358+36806_358+36819delGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2983213	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02965.hp1 HG03130.hp1 others(1): Show HG01891.hp1 HG02965.hp1 HG03130.hp1 HG03486.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0023 a0002c0016 a0001c0002 a0001c0023 a0002c0016	a0001c0002t0001 a0001c0002t0007 a0001c0023t0004 others(1): Show a0001c0002t0001 a0001c0002t0007 a0001c0023t0004 a0002c0016t0003	a0001c0002t0001g0029 a0001c0002t0007g0080 a0001c0023t0004g0041 others(1): Show a0001c0002t0001g0029 a0001c0002t0007g0080 a0001c0023t0004g0041 a0002c0016t0003g0079	4	116	0.0345	-14	c.135 others(33): Show c.1359-5103_1359-5090delAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3003684	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02559.hp1 HG02622.hp2 others(1): Show HG01891.hp1 HG02559.hp1 HG02622.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0005 a0003c0008 a0001c0002 a0001c0005 a0003c0008	a0001c0002t0001 a0001c0002t0012 a0001c0005t0001 others(1): Show a0001c0002t0001 a0001c0002t0012 a0001c0005t0001 a0003c0008t0001	a0001c0002t0001g0029 a0001c0002t0012g0013 a0001c0005t0001g0104 others(1): Show a0001c0002t0001g0029 a0001c0002t0012g0013 a0001c0005t0001g0104 a0003c0008t0001g0084	4	116	0.0345	-14	c.148 others(35): Show c.1486+15229_1486+15242delAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	3019765	AATATATA others(7): Show AATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01169.hp2 HG01175.hp1 others(23): Show HG00738.hp2 HG01169.hp2 HG01175.hp1 HG01243.hp1 HG01256.hp1 HG01257.hp2 HG01258.hp2 HG01891.hp2 HG02257.hp2 HG02258.hp2 HG02451.hp1 HG02602.hp1 HG02602.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02886.hp1 HG02886.hp2 HG02897.hp2 HG02965.hp2 HG03130.hp1 HG03486.hp2 HG03516.hp1 HG03927.hp1 HG06807.hp1 NA18906.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0009	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0021 a0001c0024 a0002c0016 a0005c0012 a0009c0027	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0002 a0001c0003t0003 a0001c0005t0001 a0001c0005t0009 a0001c0006t0003 a0001c0007t0003 a0001c0007t0004 a0001c0010t0003 a0001c0021t0002 a0001c0024t0015 a0002c0016t0003 a0005c0012t0009 a0009c0027t0001	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0059 others(23): Show a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0059 a0001c0001t0002g0030 a0001c0001t0003g0006 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0002t0002g0063 a0001c0003t0003g0046 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0009g0091 a0001c0006t0003g0069 a0001c0007t0003g0034 a0001c0007t0004g0066 a0001c0010t0003g0011 a0001c0010t0003g0077 a0001c0021t0002g0025 a0001c0024t0015g0057 a0002c0016t0003g0079 a0005c0012t0009g0093 a0009c0027t0001g0007	26	116	0.2241	-14	c.148 others(33): Show c.1487-6317_1487-6304delTATATATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	14/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99208567	GCTGTTTG others(7): Show GCTGTTTGTATTGCA	G G	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01169.hp2 HG02004.hp2 others(4): Show HG00738.hp2 HG01169.hp2 HG02004.hp2 HG02132.hp2 NA18939.hp1 NA18957.hp1 NA19070.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0006c0006	a0001c0001t0001 a0002c0002t0001 a0003c0003t0017 others(2): Show a0001c0001t0001 a0002c0002t0001 a0003c0003t0017 a0004c0004t0002 a0006c0006t0001	a0001c0001t0001g0004 a0001c0001t0001g0052 a0002c0002t0001g0003 others(4): Show a0001c0001t0001g0004 a0001c0001t0001g0052 a0002c0002t0001g0003 a0003c0003t0017g0065 a0004c0004t0002g0041 a0004c0004t0002g0051 a0006c0006t0001g0005	7	66	0.1061	-14	c.-20 others(37): Show c.-209-116772_-209-116759delGTATTGCACTGTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99284600	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00738.hp2 HG03041.hp1 others(1): Show HG00733.hp2 HG00738.hp2 HG03041.hp1 NA19043.hp2	a0002 a0004 a0009 a0002 a0004 a0009	a0002c0002 a0004c0004 a0009c0012 a0002c0002 a0004c0004 a0009c0012	a0002c0002t0008 a0002c0002t0022 a0004c0004t0002 others(1): Show a0002c0002t0008 a0002c0002t0022 a0004c0004t0002 a0009c0012t0008	a0002c0002t0008g0019 a0002c0002t0022g0013 a0004c0004t0002g0041 others(1): Show a0002c0002t0008g0019 a0002c0002t0022g0013 a0004c0004t0002g0041 a0009c0012t0008g0026	4	66	0.0606	-14	c.-20 others(35): Show c.-209-40698_-209-40685delTGTGTGTGTGTGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99329914	GACACACA others(7): Show GACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02886.hp2 HG02895.hp1 others(3): Show HG02109.hp1 HG02886.hp2 HG02895.hp1 HG02965.hp1 HG03041.hp2 HG06807.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0005 a0006	a0001c0001 a0002c0002 a0004c0004 others(2): Show a0001c0001 a0002c0002 a0004c0004 a0005c0005 a0006c0006	a0001c0001t0010 a0002c0002t0005 a0004c0004t0020 others(3): Show a0001c0001t0010 a0002c0002t0005 a0004c0004t0020 a0005c0005t0010 a0006c0006t0011 a0006c0006t0013	a0001c0001t0010g0023 a0002c0002t0005g0015 a0004c0004t0020g0024 others(3): Show a0001c0001t0010g0023 a0002c0002t0005g0015 a0004c0004t0020g0024 a0005c0005t0010g0006 a0006c0006t0011g0033 a0006c0006t0013g0025	6	66	0.0909	-14	c.-71 others(31): Show c.-71+4460_-71+4473delCACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99408434	AAGAAAGA others(7): Show AAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02602.hp2 HG03130.hp1 others(1): Show HG02257.hp1 HG02602.hp2 HG03130.hp1 HG06807.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0003c0011 a0005c0005 a0001c0001 a0003c0011 a0005c0005	a0001c0001t0001 a0003c0011t0019 a0005c0005t0001 a0001c0001t0001 a0003c0011t0019 a0005c0005t0001	a0001c0001t0001g0020 a0001c0001t0001g0053 a0003c0011t0019g0059 others(1): Show a0001c0001t0001g0020 a0001c0001t0001g0053 a0003c0011t0019g0059 a0005c0005t0001g0035	4	66	0.0606	-14	c.-71 others(33): Show c.-71+82966_-71+82979delGAAAGAAAGAAAGA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99422516	TTTTATAT others(7): Show TTTTATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0002 a0004c0004t0002	a0004c0004t0002g0051 a0004c0004t0002g0051	1	66	0.0152	-14	c.-71 others(33): Show c.-71+97034_-71+97047delTTATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99422518	TTATATAT others(7): Show TTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00738.hp2 HG01934.hp1 others(2): Show HG00735.hp2 HG00738.hp2 HG01934.hp1 HG02602.hp1 NA19070.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 others(2): Show a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 a0002c0002t0001 a0004c0004t0002	a0001c0001t0006g0066 a0001c0001t0011g0062 a0001c0001t0012g0030 others(2): Show a0001c0001t0006g0066 a0001c0001t0011g0062 a0001c0001t0012g0030 a0002c0002t0001g0003 a0004c0004t0002g0041	5	66	0.0758	-14	c.-71 others(33): Show c.-71+97064_-71+97077delATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99541956	CAAAAAAA others(7): Show CAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01934.hp2 HG01169.hp2 HG01934.hp2	a0003 a0006 a0003 a0006	a0003c0003 a0006c0006 a0003c0003 a0006c0006	a0003c0003t0002 a0006c0006t0001 a0003c0003t0002 a0006c0006t0001	a0003c0003t0002g0011 a0006c0006t0001g0005 a0003c0003t0002g0011 a0006c0006t0001g0005	2	66	0.0303	-14	c.-70 others(33): Show c.-70-14179_-70-14166delAAAAAAAAAAAAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99556554	AATATATA others(7): Show AATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02886.hp1 HG03471.hp1 others(3): Show HG01934.hp1 HG02886.hp1 HG03471.hp1 NA18939.hp2 NA19070.hp1 NA19070.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0007 a0008	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0007c0007 a0008c0008	a0001c0001t0012 a0001c0001t0014 a0002c0002t0001 others(3): Show a0001c0001t0012 a0001c0001t0014 a0002c0002t0001 a0003c0003t0002 a0007c0007t0023 a0008c0008t0007	a0001c0001t0012g0030 a0001c0001t0014g0016 a0002c0002t0001g0003 others(3): Show a0001c0001t0012g0030 a0001c0001t0014g0016 a0002c0002t0001g0003 a0003c0003t0002g0027 a0007c0007t0023g0046 a0008c0008t0007g0038	6	66	0.0909	-14	c.55+ others(27): Show c.55+312_55+325delATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99598361	TCTCTCTC others(7): Show TCTCTCTCTCTCTCC	T T	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp2 HG01496.hp1 HG01243.hp1 HG01243.hp2 HG01496.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0005 a0002c0002t0004 a0002c0002t0021 a0001c0001t0005 a0002c0002t0004 a0002c0002t0021	a0001c0001t0005g0014 a0002c0002t0004g0039 a0002c0002t0021g0055 a0001c0001t0005g0014 a0002c0002t0004g0039 a0002c0002t0021g0055	3	66	0.0455	-14	c.55+ others(31): Show c.55+42105_55+42118delCCCTCTCTCTCTCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99625915	TATATATA others(7): Show TATATATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 NA18957.hp2 NA19000.hp2 HG00735.hp2 NA18957.hp2 NA19000.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0004 a0001c0001 a0003c0003 a0004c0004	a0001c0001t0011 a0003c0003t0002 a0004c0004t0002 a0001c0001t0011 a0003c0003t0002 a0004c0004t0002	a0001c0001t0011g0062 a0003c0003t0002g0002 a0004c0004t0002g0001 a0001c0001t0011g0062 a0003c0003t0002g0002 a0004c0004t0002g0001	3	66	0.0455	-14	c.55+ others(31): Show c.55+69648_55+69661delTATATATACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99835648	AATGGAAA others(7): Show AATGGAAACATATGG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00735.hp1 HG02257.hp2 others(4): Show HG00733.hp1 HG00735.hp1 HG02257.hp2 HG02723.hp2 HG02735.hp2 HG02976.hp2 HG03471.hp2	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0006	a0001c0001 a0003c0003 a0005c0005 others(1): Show a0001c0001 a0003c0003 a0005c0005 a0006c0006	a0001c0001t0004 a0001c0001t0009 a0001c0001t0015 others(3): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0015 a0003c0003t0002 a0005c0005t0001 a0006c0006t0009	a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0009g0063 others(4): Show a0001c0001t0004g0029 a0001c0001t0004g0044 a0001c0001t0009g0063 a0001c0001t0015g0064 a0003c0003t0002g0061 a0005c0005t0001g0017 a0006c0006t0009g0042	7	66	0.1061	-14	c.278 others(31): Show c.278-9200_278-9187delGAAACATATGGATG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99889291	GGTGTGTG others(7): Show GGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0057 a0003c0003t0007g0057	1	66	0.0152	-14	c.578 others(33): Show c.578-26710_578-26697delGTGTGTGTGTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99934935	TATATATA others(7): Show TATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp2 HG03471.hp1 HG02886.hp1 HG02886.hp2 HG03471.hp1	a0003 a0004 a0008 a0003 a0004 a0008	a0003c0003 a0004c0004 a0008c0008 a0003c0003 a0004c0004 a0008c0008	a0003c0003t0002 a0004c0004t0020 a0008c0008t0007 a0003c0003t0002 a0004c0004t0020 a0008c0008t0007	a0003c0003t0002g0027 a0004c0004t0020g0024 a0008c0008t0007g0038 a0003c0003t0002g0027 a0004c0004t0020g0024 a0008c0008t0007g0038	3	66	0.0455	-14	c.673 others(33): Show c.673+18788_673+18801delTATATATATATACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99968656	CTTTTTTT others(7): Show CTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02886.hp2 HG02976.hp1 HG02723.hp1 HG02886.hp2 HG02976.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0004 a0001c0001 a0003c0003 a0004c0004	a0001c0001t0001 a0003c0003t0007 a0004c0004t0020 a0001c0001t0001 a0003c0003t0007 a0004c0004t0020	a0001c0001t0001g0008 a0003c0003t0007g0034 a0004c0004t0020g0024 a0001c0001t0001g0008 a0003c0003t0007g0034 a0004c0004t0020g0024	3	66	0.0455	-14	c.877 others(33): Show c.877+11664_877+11677delTTTTTTTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	8/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100204297	AATATATA others(7): Show AATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02723.hp1 HG02895.hp2 others(1): Show HG01081.hp2 HG02723.hp1 HG02895.hp2 HG03130.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0010 a0004c0004t0013	a0001c0001t0001g0008 a0001c0001t0006g0040 a0001c0001t0010g0047 others(1): Show a0001c0001t0001g0008 a0001c0001t0006g0040 a0001c0001t0010g0047 a0004c0004t0013g0050	4	66	0.0606	-14	c.188 others(35): Show c.1884+10668_1884+10681delTATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1098783	CACACACA others(7): Show CACACACATATATAT	C C	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	232	0.0043	-14	c.-83 others(31): Show c.-83+5665_-83+5678delCACACATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1098806	ATATATAT others(7): Show ATATATATATATAGT	A A	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0227 a0001c0002t0001g0227	1	232	0.0043	-14	c.-83 others(31): Show c.-83+5687_-83+5700delTATATATATATAGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1142968	GTATATAT others(7): Show GTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp2 HG00733.hp2 others(47): Show HG00140.hp1 HG00639.hp2 HG00733.hp2 HG00735.hp1 HG00738.hp1 HG00741.hp1 HG01071.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01175.hp2 HG01256.hp2 HG01258.hp1 HG01261.hp1 HG01361.hp2 HG01978.hp1 HG01993.hp1 HG02027.hp2 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02523.hp1 HG02523.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02738.hp2 HG02922.hp2 HG03195.hp2 HG03654.hp1 HG03669.hp2 HG03834.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp2 NA18950.hp2 NA18951.hp2 NA18971.hp1 NA18979.hp1 NA19000.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19084.hp2 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0008 a0007c0018	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(8): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0005t0002 a0001c0007t0001 a0001c0007t0006 a0001c0008t0001 a0007c0018t0001	a0001c0001t0001g0033 a0001c0001t0001g0044 a0001c0001t0001g0054 others(47): Show a0001c0001t0001g0033 a0001c0001t0001g0044 a0001c0001t0001g0054 a0001c0001t0001g0057 a0001c0001t0001g0086 a0001c0001t0001g0105 a0001c0001t0001g0126 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0149 a0001c0001t0001g0152 a0001c0001t0001g0173 a0001c0001t0001g0198 a0001c0001t0001g0204 a0001c0002t0001g0053 a0001c0002t0001g0098 a0001c0002t0001g0116 a0001c0002t0001g0117 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0136 a0001c0002t0001g0139 a0001c0002t0001g0147 a0001c0002t0001g0174 a0001c0002t0002g0020 a0001c0003t0001g0025 a0001c0003t0001g0031 a0001c0003t0001g0042 a0001c0003t0001g0074 a0001c0003t0001g0142 a0001c0003t0001g0154 a0001c0003t0001g0226 a0001c0004t0001g0066 a0001c0004t0001g0072 a0001c0004t0001g0073 a0001c0004t0001g0090 a0001c0004t0001g0123 a0001c0005t0001g0113 a0001c0005t0001g0196 a0001c0005t0001g0203 a0001c0005t0002g0115 a0001c0007t0001g0001 a0001c0007t0001g0014 a0001c0007t0001g0015 a0001c0007t0001g0048 a0001c0007t0001g0146 a0001c0007t0001g0155 a0001c0007t0006g0170 a0001c0008t0001g0120 a0007c0018t0001g0148	50	232	0.2155	-14	c.-82 others(31): Show c.-82-4937_-82-4924delATATATATATATAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1161769	TACACACA others(7): Show TACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01071.hp2 HG01070.hp1 HG01071.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0108 a0001c0002t0001g0109	2	232	0.0086	-14	c.55+ others(31): Show c.55+13726_55+13739delCACACACACACACA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1201097	TTTTGTGT others(7): Show TTTTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0209 a0001c0002t0001g0209	1	232	0.0043	-14	c.56- others(31): Show c.56-19588_56-19575delTTGTGTGTGTGTGT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1202545	AATAAATA others(7): Show AATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0001 a0001c0013t0001	a0001c0013t0001g0199 a0001c0013t0001g0199	1	232	0.0043	-14	c.56- others(31): Show c.56-18140_56-18127delTAAATAAATAAATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245197	GATATATA others(7): Show GATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG00735.hp2 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0003 a0001c0004t0001 a0001c0002t0003 a0001c0004t0001	a0001c0002t0003g0079 a0001c0004t0001g0065 a0001c0002t0003g0079 a0001c0004t0001g0065	2	232	0.0086	-14	c.358 others(33): Show c.358+17230_358+17243delTATATATATATATA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22		INFO_REALIGN_3_PRIME	chr3	TogoVar

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