Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GALNT15_chr3_16169680_16235165	16207529	AAAAAAAA others(8): Show AAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp2 HG00642.hp1 others(46): Show HG00140.hp1 HG00280.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp1 HG01071.hp2 HG01081.hp1 HG01109.hp2 HG01167.hp1 HG01169.hp1 HG01257.hp1 HG01261.hp1 HG01358.hp1 HG01516.hp1 HG01891.hp2 HG02145.hp1 HG02258.hp1 HG02280.hp2 HG02572.hp2 HG02647.hp1 HG02683.hp2 HG02895.hp1 HG03041.hp1 HG03139.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03516.hp2 HG03579.hp2 HG04184.hp2 HG04199.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18957.hp2 NA18961.hp1 NA19000.hp2 NA19003.hp1 NA19043.hp1 NA19043.hp2 NA19067.hp1 NA19068.hp2 NA19072.hp1 NA19083.hp2 NA19085.hp2 NA19088.hp2 NA20300.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0006 a0014	a0001c0001 a0001c0002 a0001c0007 others(10): Show a0001c0001 a0001c0002 a0001c0007 a0001c0021 a0001c0028 a0002c0003 a0002c0010 a0002c0013 a0003c0004 a0003c0009 a0003c0011 a0006c0020 a0014c0031	a0001c0001t0001 a0001c0001t0006 a0001c0001t0016 others(18): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0016 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0002t0013 a0001c0002t0032 a0001c0002t0034 a0001c0007t0008 a0001c0021t0020 a0001c0028t0020 a0002c0003t0001 a0002c0010t0011 a0002c0013t0005 a0003c0004t0006 a0003c0009t0001 a0003c0009t0006 a0003c0011t0006 a0006c0020t0006 a0014c0031t0005	a0001c0001t0001g0252 a0001c0001t0001g0281 a0001c0001t0006g0082 others(45): Show a0001c0001t0001g0252 a0001c0001t0001g0281 a0001c0001t0006g0082 a0001c0001t0016g0264 a0001c0002t0003g0105 a0001c0002t0005g0115 a0001c0002t0005g0116 a0001c0002t0005g0127 a0001c0002t0005g0129 a0001c0002t0005g0145 a0001c0002t0005g0152 a0001c0002t0005g0155 a0001c0002t0005g0157 a0001c0002t0005g0158 a0001c0002t0005g0159 a0001c0002t0005g0162 a0001c0002t0005g0165 a0001c0002t0007g0022 a0001c0002t0007g0023 a0001c0002t0007g0024 a0001c0002t0007g0025 a0001c0002t0013g0016 a0001c0002t0013g0357 a0001c0002t0013g0358 a0001c0002t0013g0359 a0001c0002t0032g0066 a0001c0002t0034g0156 a0001c0007t0008g0180 a0001c0021t0020g0065 a0001c0028t0020g0051 a0002c0003t0001g0140 a0002c0003t0001g0206 a0002c0010t0011g0062 a0002c0010t0011g0329 a0002c0013t0005g0189 a0003c0004t0006g0336 a0003c0004t0006g0338 a0003c0004t0006g0339 a0003c0009t0001g0049 a0003c0009t0006g0046 a0003c0009t0006g0047 a0003c0009t0006g0048 a0003c0011t0006g0040 a0003c0011t0006g0042 a0003c0011t0006g0043 a0006c0020t0006g0052 a0006c0020t0006g0053 a0014c0031t0005g0114	49	388	0.1263	-15	c.912 others(30): Show c.912-973_912-959delAAAAAAAAAAAAAAT	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding	3/9			chr3	TogoVar
GALNT16_chr14_69255158_69359466	69296720	CAGATAGA others(8): Show CAGATAGATGATAGAT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00609.hp2 HG00621.hp2 others(35): Show HG00408.hp2 HG00609.hp2 HG00621.hp2 HG01074.hp1 HG02015.hp1 HG02129.hp2 HG02132.hp2 HG02165.hp1 HG02165.hp2 HG02523.hp2 HG02630.hp2 HG02683.hp2 HG03017.hp2 HG03098.hp1 HG03490.hp1 HG03492.hp1 HG03579.hp2 HG03688.hp2 HG03831.hp2 HG04184.hp2 NA18944.hp2 NA18945.hp2 NA18948.hp1 NA18957.hp1 NA18968.hp2 NA18969.hp1 NA18975.hp1 NA18982.hp2 NA18995.hp1 NA19007.hp1 NA19007.hp2 NA19043.hp1 NA19056.hp1 NA19058.hp2 NA19068.hp1 NA19077.hp1 NA19085.hp2 NA19087.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0010	a0001c0001 a0001c0003 a0001c0009 others(3): Show a0001c0001 a0001c0003 a0001c0009 a0002c0002 a0004c0006 a0010c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0001t0012 a0001c0001t0018 a0001c0001t0024 a0001c0001t0028 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0009t0001 a0002c0002t0001 a0002c0002t0002 a0004c0006t0003 a0010c0012t0001	a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0120 others(34): Show a0001c0001t0001g0116 a0001c0001t0001g0118 a0001c0001t0001g0120 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0129 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0155 a0001c0001t0001g0284 a0001c0001t0002g0109 a0001c0001t0002g0112 a0001c0001t0002g0135 a0001c0001t0004g0002 a0001c0001t0008g0130 a0001c0001t0012g0022 a0001c0001t0018g0136 a0001c0001t0024g0097 a0001c0001t0028g0111 a0001c0003t0001g0105 a0001c0003t0002g0110 a0001c0003t0003g0098 a0001c0003t0003g0103 a0001c0003t0003g0115 a0001c0003t0003g0119 a0001c0003t0003g0124 a0001c0003t0003g0224 a0001c0003t0003g0226 a0001c0009t0001g0283 a0002c0002t0001g0113 a0002c0002t0002g0106 a0004c0006t0003g0114 a0004c0006t0003g0223 a0004c0006t0003g0225 a0010c0012t0001g0121	38	306	0.1242	-15	c.178 others(34): Show c.178-23982_178-23968delGATAGATAGATAGAT	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT17_chr7_71127144_71718599	71486334	AAATAATA others(8): Show AAATAATAATAATAAT	A A	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG03492.hp2 HG03704.hp1 others(2): Show HG02129.hp2 HG03492.hp2 HG03704.hp1 NA19060.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0003t0014	a0001c0001t0001g0039 a0001c0001t0003g0001 a0001c0001t0007g0059 others(2): Show a0001c0001t0001g0039 a0001c0001t0003g0001 a0001c0001t0007g0059 a0001c0001t0009g0063 a0001c0003t0014g0070	5	76	0.0658	-15	c.962 others(34): Show c.962+65270_962+65284delATAATAATAATAATA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71540093	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	76	0.0132	-15	c.963 others(34): Show c.963-31171_963-31157delTTTTTTTTTTTTTTT	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71564273	CTTTTCTT others(8): Show CTTTTCTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0050 a0001c0001t0005g0050	1	76	0.0132	-15	c.963 others(32): Show c.963-7007_963-6993delCTTTTTTTTTTTTTT	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71593149	CAATAATA others(8): Show CAATAATAATAATAAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00438.hp1 HG00438.hp2 others(35): Show HG00323.hp2 HG00438.hp1 HG00438.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00738.hp1 HG00738.hp2 HG00741.hp1 HG01106.hp1 HG01106.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp2 HG02040.hp1 HG02040.hp2 HG02129.hp2 HG02922.hp2 HG02976.hp2 HG03490.hp2 HG03492.hp1 HG03669.hp1 HG03669.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG04228.hp2 NA18983.hp1 NA18983.hp2 NA19000.hp1 NA19000.hp2 NA19060.hp1 NA19060.hp2 NA20129.hp1 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0002c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0002t0003 a0001c0002t0007 a0001c0002t0008 a0001c0002t0010 a0001c0003t0002 a0001c0003t0014 a0001c0004t0003 a0001c0004t0004 a0001c0007t0020 a0002c0010t0003	a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0041 others(35): Show a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0003g0003 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0035 a0001c0001t0005g0054 a0001c0001t0006g0056 a0001c0001t0006g0057 a0001c0001t0006g0064 a0001c0001t0006g0066 a0001c0001t0007g0059 a0001c0001t0007g0062 a0001c0001t0009g0063 a0001c0001t0011g0036 a0001c0001t0011g0040 a0001c0001t0011g0049 a0001c0001t0012g0008 a0001c0001t0012g0012 a0001c0001t0012g0014 a0001c0001t0013g0075 a0001c0001t0015g0076 a0001c0001t0016g0043 a0001c0002t0003g0004 a0001c0002t0003g0006 a0001c0002t0007g0060 a0001c0002t0008g0025 a0001c0002t0010g0074 a0001c0003t0002g0067 a0001c0003t0014g0068 a0001c0003t0014g0070 a0001c0004t0003g0013 a0001c0004t0004g0030 a0001c0007t0020g0005 a0002c0010t0003g0009	38	76	0.5000	-15	c.108 others(36): Show c.1080+21765_1080+21779delTAATAATAATAATAA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71680083	CCTCCCTC others(8): Show CCTCCCTCTCTCCCTT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0019 a0001c0002t0019	a0001c0002t0019g0017 a0001c0002t0019g0017	1	76	0.0132	-15	c.150 others(34): Show c.1500+2779_1500+2793delTCCCTCTCTCCCTTC	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT18_chr11_11265877_11627005	11510531	CAAGGCAC others(8): Show CAAGGCACTCATGCCT	C C	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0247 a0001c0001t0001g0247	1	260	0.0039	-15	c.236 others(34): Show c.236-61610_236-61596delAGGCATGAGTGCCTT	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT1_chr18_35576740_35716834	35652282	TTCTTTCT others(8): Show TTCTTTCTTTGTTATC	T T	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0039 a0001c0001t0002g0039	1	310	0.0032	-15	c.-10 others(34): Show c.-103-2275_-103-2261delTTTCTTTGTTATCTC	GALNT1	ENSG00000141429.14	transcript	ENST00000269195.6	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALNT2_chr1_230062238_230287122	230200053	CTTTTTTT others(8): Show CTTTTTTTTCTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00738.hp1 HG02040.hp2 others(5): Show HG00438.hp1 HG00738.hp1 HG02040.hp2 HG02155.hp2 HG02559.hp1 HG03710.hp2 HG03831.hp2 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 a0001c0001t0014 a0001c0001t0056 a0001c0001t0057	a0001c0001t0001g0321 a0001c0001t0006g0144 a0001c0001t0009g0177 others(5): Show a0001c0001t0001g0321 a0001c0001t0006g0144 a0001c0001t0009g0177 a0001c0001t0014g0048 a0001c0001t0014g0212 a0001c0001t0014g0247 a0001c0001t0056g0028 a0001c0001t0057g0138	8	324	0.0247	-15	c.221 others(32): Show c.221-3075_221-3061delCTTTTTTTTTTTTTT	GALNT2	ENSG00000143641.10	transcript	ENST00000366672.5	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
GALNT2_chr1_230062238_230287122	230283458	GAGGTTGG others(8): Show GAGGTTGGCCACTGGC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0050 a0001c0001t0050	a0001c0001t0050g0168 a0001c0001t0050g0168	1	324	0.0031	-15	c.40 others(26): Show c.4001_*4015delAGGTTGGCCACTGGC	GALNT2	ENSG00000143641.10	transcript	ENST00000366672.5	protein_coding		1337		chr1	TogoVar
GALNT5_chr2_157252705_157323491	157256570	ATATATAT others(8): Show ATATATATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG02647.hp2 HG02717.hp1 others(1): Show HG00741.hp1 HG02647.hp2 HG02717.hp1 HG02809.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0008 a0001c0001 a0005c0008	a0001c0001t0001 a0005c0008t0004 a0005c0008t0018 others(1): Show a0001c0001t0001 a0005c0008t0004 a0005c0008t0018 a0005c0008t0063	a0001c0001t0001g0020 a0005c0008t0004g0201 a0005c0008t0018g0170 others(1): Show a0001c0001t0001g0020 a0005c0008t0004g0201 a0005c0008t0018g0170 a0005c0008t0063g0171	4	282	0.0142	-15	c.-15 others(26): Show c.-1512_-1498delTATATATATATATAT	GALNT5	ENSG00000136542.9	transcript	ENST00000259056.5	protein_coding		1134		chr2	TogoVar
GALNT6_chr12_51346252_51396406	51371054	AATTATTA others(8): Show AATTATTATTATTATT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00423.hp1 others(120): Show HG00099.hp1 HG00140.hp1 HG00423.hp1 HG00423.hp2 HG00558.hp1 HG00621.hp1 HG00639.hp1 HG00642.hp1 HG00673.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01123.hp2 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01258.hp2 HG01261.hp2 HG01361.hp1 HG01433.hp1 HG01496.hp2 HG01515.hp2 HG01978.hp2 HG02015.hp2 HG02040.hp1 HG02080.hp2 HG02083.hp1 HG02132.hp1 HG02145.hp1 HG02155.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp1 HG02280.hp1 HG02486.hp1 HG02523.hp1 HG02559.hp1 HG02572.hp2 HG02615.hp1 HG02647.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02735.hp1 HG02735.hp2 HG02895.hp2 HG02896.hp2 HG02897.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03486.hp1 HG03490.hp1 HG03492.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp2 HG03834.hp2 HG03927.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp2 HG06807.hp1 NA18906.hp1 NA18945.hp1 NA18946.hp1 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18955.hp1 NA18955.hp2 NA18957.hp1 NA18959.hp2 NA18964.hp1 NA18964.hp2 NA18973.hp2 NA18978.hp1 NA18982.hp2 NA18990.hp1 NA18998.hp2 NA19000.hp2 NA19005.hp2 NA19007.hp1 NA19030.hp1 NA19043.hp2 NA19057.hp1 NA19058.hp2 NA19060.hp2 NA19062.hp1 NA19064.hp1 NA19070.hp2 NA19074.hp2 NA19077.hp2 NA19085.hp2 NA19086.hp1 NA19087.hp1 NA19088.hp1 NA19091.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0005 a0009	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0022 a0001c0024 a0002c0004 a0003c0005 a0005c0014 a0009c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(39): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0014 a0001c0001t0017 a0001c0001t0019 a0001c0001t0020 a0001c0001t0026 a0001c0001t0028 a0001c0001t0029 a0001c0001t0034 a0001c0001t0036 a0001c0001t0038 a0001c0001t0040 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0061 a0001c0001t0067 a0001c0001t0081 a0001c0001t0087 a0001c0001t0092 a0001c0002t0004 a0001c0003t0004 a0001c0003t0007 a0001c0003t0009 a0001c0003t0070 a0001c0003t0074 a0001c0003t0077 a0001c0006t0041 a0001c0022t0001 a0001c0024t0075 a0002c0004t0004 a0002c0004t0009 a0002c0004t0015 a0003c0005t0001 a0005c0014t0014 a0009c0011t0001	a0001c0001t0001g0324 a0001c0001t0001g0353 a0001c0001t0001g0379 others(116): Show a0001c0001t0001g0324 a0001c0001t0001g0353 a0001c0001t0001g0379 a0001c0001t0001g0380 a0001c0001t0002g0049 a0001c0001t0002g0053 a0001c0001t0002g0120 a0001c0001t0002g0163 a0001c0001t0004g0006 a0001c0001t0004g0131 a0001c0001t0004g0171 a0001c0001t0004g0176 a0001c0001t0005g0290 a0001c0001t0008g0008 a0001c0001t0008g0216 a0001c0001t0008g0221 a0001c0001t0008g0222 a0001c0001t0008g0223 a0001c0001t0008g0237 a0001c0001t0008g0247 a0001c0001t0008g0248 a0001c0001t0008g0252 a0001c0001t0008g0256 a0001c0001t0008g0271 a0001c0001t0008g0272 a0001c0001t0008g0285 a0001c0001t0008g0287 a0001c0001t0008g0298 a0001c0001t0008g0333 a0001c0001t0008g0360 a0001c0001t0008g0371 a0001c0001t0008g0398 a0001c0001t0009g0218 a0001c0001t0009g0219 a0001c0001t0009g0239 a0001c0001t0009g0268 a0001c0001t0009g0269 a0001c0001t0009g0346 a0001c0001t0011g0001 a0001c0001t0011g0071 a0001c0001t0011g0080 a0001c0001t0011g0082 a0001c0001t0011g0101 a0001c0001t0011g0111 a0001c0001t0011g0113 a0001c0001t0011g0114 a0001c0001t0011g0129 a0001c0001t0011g0130 a0001c0001t0011g0135 a0001c0001t0011g0153 a0001c0001t0011g0184 a0001c0001t0014g0117 a0001c0001t0014g0143 a0001c0001t0014g0146 a0001c0001t0014g0185 a0001c0001t0017g0036 a0001c0001t0019g0241 a0001c0001t0019g0257 a0001c0001t0020g0020 a0001c0001t0020g0052 a0001c0001t0026g0358 a0001c0001t0028g0381 a0001c0001t0029g0236 a0001c0001t0029g0340 a0001c0001t0034g0013 a0001c0001t0036g0116 a0001c0001t0038g0100 a0001c0001t0040g0104 a0001c0001t0053g0187 a0001c0001t0054g0188 a0001c0001t0055g0190 a0001c0001t0061g0046 a0001c0001t0067g0266 a0001c0001t0081g0255 a0001c0001t0087g0372 a0001c0001t0092g0233 a0001c0002t0004g0024 a0001c0003t0004g0030 a0001c0003t0004g0032 a0001c0003t0004g0034 a0001c0003t0004g0048 a0001c0003t0004g0074 a0001c0003t0004g0081 a0001c0003t0004g0124 a0001c0003t0004g0160 a0001c0003t0004g0165 a0001c0003t0004g0168 a0001c0003t0004g0177 a0001c0003t0004g0191 a0001c0003t0004g0193 a0001c0003t0004g0199 a0001c0003t0007g0332 a0001c0003t0007g0409 a0001c0003t0007g0414 a0001c0003t0009g0224 a0001c0003t0009g0253 a0001c0003t0009g0254 a0001c0003t0009g0277 a0001c0003t0009g0284 a0001c0003t0009g0291 a0001c0003t0009g0315 a0001c0003t0009g0328 a0001c0003t0009g0337 a0001c0003t0070g0286 a0001c0003t0074g0278 a0001c0003t0077g0396 a0001c0006t0041g0061 a0001c0022t0001g0225 a0001c0024t0075g0293 a0002c0004t0004g0025 a0002c0004t0004g0106 a0002c0004t0009g0321 a0002c0004t0009g0359 a0002c0004t0009g0364 a0002c0004t0015g0383 a0002c0004t0015g0412 a0003c0005t0001g0392 a0005c0014t0014g0089 a0009c0011t0001g0208	123	428	0.2874	-15	c.665 others(32): Show c.665-5490_665-5476delAATAATAATAATAAT	GALNT6	ENSG00000139629.16	transcript	ENST00000356317.8	protein_coding	4/11			chr12	TogoVar
GALNT7_chr4_173163811_173328967	173167583	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp1 HG02809.hp1 HG02897.hp1 others(2): Show HG02622.hp1 HG02809.hp1 HG02897.hp1 HG03139.hp1 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0002t0003 a0001c0002t0006 others(1): Show a0001c0002t0001 a0001c0002t0003 a0001c0002t0006 a0001c0003t0002	a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0003g0015 others(2): Show a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0003g0015 a0001c0002t0006g0171 a0001c0003t0002g0169	5	266	0.0188	-15	c.-12 others(26): Show c.-1252_-1238delAAAAAAAAAAAAAAA	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding		1227		chr4	TogoVar
GALNT7_chr4_173163811_173328967	173316171	GGCCTCAC others(8): Show GGCCTCACCTGCTACT	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00323.hp2 others(90): Show HG00140.hp2 HG00280.hp2 HG00323.hp2 HG00423.hp2 HG00558.hp2 HG00597.hp2 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01070.hp1 HG01074.hp1 HG01099.hp1 HG01099.hp2 HG01106.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01257.hp1 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01952.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02135.hp1 HG02145.hp2 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp2 HG02559.hp1 HG02602.hp2 HG02630.hp2 HG02683.hp2 HG02738.hp1 HG02922.hp2 HG02970.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03486.hp1 HG03669.hp1 HG03704.hp1 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG06807.hp1 NA18945.hp2 NA18946.hp1 NA18947.hp1 NA18948.hp2 NA18963.hp1 NA18966.hp1 NA18969.hp1 NA18969.hp2 NA18975.hp2 NA18979.hp2 NA18980.hp2 NA18983.hp1 NA18984.hp2 NA18986.hp1 NA18992.hp1 NA18993.hp1 NA19002.hp2 NA19005.hp2 NA19010.hp2 NA19030.hp2 NA19055.hp2 NA19064.hp1 NA19066.hp1 NA19074.hp1 NA19077.hp1 NA19081.hp1 NA20805.hp2 NA20905.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0007c0009 a0001c0001 a0001c0002 a0007c0009	a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0002t0001 a0001c0002t0010 a0007c0009t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(90): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0039 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0063 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0004g0112 a0001c0001t0004g0115 a0001c0001t0004g0122 a0001c0001t0010g0129 a0001c0001t0014g0057 a0001c0001t0015g0157 a0001c0002t0001g0017 a0001c0002t0001g0019 a0001c0002t0001g0179 a0001c0002t0001g0191 a0001c0002t0001g0200 a0001c0002t0001g0213 a0001c0002t0001g0215 a0001c0002t0001g0223 a0001c0002t0001g0226 a0001c0002t0001g0235 a0001c0002t0001g0262 a0001c0002t0001g0263 a0001c0002t0010g0224 a0007c0009t0001g0139	93	266	0.3496	-15	c.160 others(34): Show c.1609-1460_1609-1446delCTCACCTGCTACTGC	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT9_chr12_132191372_132334589	132223135	CCACACAC others(8): Show CCACACACACACCACA	C C	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0121 a0001c0004t0001g0121	1	183	0.0055	-15	c.107 others(36): Show c.1078-19460_1078-19446delTGTGGTGTGTGTGTG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132291299	TAGCACCC others(8): Show TAGCACCCACATCCAC	T T	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01099.hp1 HG02257.hp2 others(4): Show HG00733.hp1 HG01099.hp1 HG02257.hp2 HG03139.hp2 HG06807.hp2 NA19004.hp1 NA20805.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0004c0023	a0001c0001t0001 a0001c0003t0001 a0001c0005t0001 others(1): Show a0001c0001t0001 a0001c0003t0001 a0001c0005t0001 a0004c0023t0005	a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0075 others(4): Show a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0075 a0001c0001t0001g0125 a0001c0003t0001g0030 a0001c0005t0001g0031 a0004c0023t0005g0028	7	183	0.0383	-15	c.239 others(32): Show c.239-4884_239-4870delGTGGATGTGGGTGCT	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132291325	TCCACAGC others(8): Show TCCACAGCACCCACAA	T T	intron_variant intron_variant	MODIFIER	NA20805.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	183	0.0055	-15	c.239 others(32): Show c.239-4910_239-4896delTTGTGGGTGCTGTGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132291340	ACCACAGC others(8): Show ACCACAGCACCCACGT	A A	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01109.hp1 HG00609.hp2 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0025 a0001c0001 a0001c0025	a0001c0001t0001 a0001c0025t0012 a0001c0001t0001 a0001c0025t0012	a0001c0001t0001g0040 a0001c0025t0012g0048 a0001c0001t0001g0040 a0001c0025t0012g0048	2	183	0.0109	-15	c.239 others(32): Show c.239-4925_239-4911delACGTGGGTGCTGTGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNTL5_chr7_151951446_152024929	151995347	AATTTTTT others(8): Show AATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03471.hp2 NA19057.hp1 NA19065.hp2 HG03471.hp2 NA19057.hp1 NA19065.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0001 a0001c0001t0002 a0003c0003t0001	a0001c0001t0002g0306 a0001c0001t0002g0380 a0003c0003t0001g0199 a0001c0001t0002g0306 a0001c0001t0002g0380 a0003c0003t0001g0199	3	384	0.0078	-15	c.659 others(32): Show c.659-7366_659-7352delATTTTTTTTTTTTTT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	5/8			chr7	TogoVar
GALNTL5_chr7_151951446_152024929	151995348	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02280.hp2 HG03516.hp2 HG02145.hp2 HG02280.hp2 HG03516.hp2	a0007 a0007	a0007c0007 a0007c0007	a0007c0007t0003 a0007c0007t0003	a0007c0007t0003g0339 a0007c0007t0003g0342 a0007c0007t0003g0344 a0007c0007t0003g0339 a0007c0007t0003g0342 a0007c0007t0003g0344	3	384	0.0078	-15	c.659 others(32): Show c.659-7338_659-7324delTTTTTTTTTTTTTTT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNTL5_chr7_151951446_152024929	152023967	CACCTGGA others(8): Show CACCTGGAAATCTTGG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0228 a0001c0001t0001g0228	1	384	0.0026	-15	c.41 others(26): Show c.4167_*4181delACCTGGAAATCTTGG	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding		4039		chr7	TogoVar
GALNTL6_chr4_171808404_173046559	172058113	GTTGTTTT others(8): Show GTTGTTTTGTTTTGTT	G G	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02717.hp2 HG02723.hp2 others(2): Show HG02015.hp1 HG02717.hp2 HG02723.hp2 HG02976.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0003	a0001c0001t0001g0033 a0001c0001t0002g0008 a0001c0001t0002g0037 others(2): Show a0001c0001t0001g0033 a0001c0001t0002g0008 a0001c0001t0002g0037 a0001c0001t0007g0006 a0001c0002t0003g0001	5	40	0.1250	-15	c.139 others(36): Show c.139-171517_139-171503delTTGTTTTGTTTTGTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172138501	ATATATAT others(8): Show ATATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	40	0.0250	-15	c.139 others(34): Show c.139-91153_139-91139delATATATATATATTTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172405441	ATATTTTT others(8): Show ATATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0031 a0001c0001t0011g0031	1	40	0.0250	-15	c.553 others(34): Show c.553+56754_553+56768delATTTTTTTTTTTTTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172443147	TATATATA others(8): Show TATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0007 a0001c0002t0002g0007	1	40	0.0250	-15	c.553 others(34): Show c.553+94459_553+94473delATATATATATATATA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12			chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172703275	ATCTTAGA others(8): Show ATCTTAGAAGAAAGGC	A A	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02630.hp2 HG02647.hp2 others(3): Show HG02015.hp1 HG02630.hp2 HG02647.hp2 HG02735.hp1 HG03195.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 a0001c0001t0001 a0001c0001t0003 a0001c0002t0002	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0029 others(3): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0003g0019 a0001c0002t0002g0007	6	40	0.1500	-15	c.554 others(36): Show c.554-106084_554-106070delCTTAGAAGAAAGGCT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172741077	CTGAATTA others(8): Show CTGAATTAGTGAATGT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02015.hp1 HG02258.hp2 others(19): Show HG01884.hp1 HG02015.hp1 HG02258.hp2 HG02451.hp2 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp2 HG02723.hp1 HG02735.hp1 HG02965.hp1 HG02976.hp2 HG03130.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03579.hp2 NA18906.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012 a0001c0002t0002 a0001c0002t0003 a0001c0003t0005	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0014 others(19): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0002g0003 a0001c0001t0002g0008 a0001c0001t0002g0009 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0032 a0001c0001t0003g0018 a0001c0001t0003g0019 a0001c0001t0007g0006 a0001c0001t0009g0024 a0001c0001t0010g0021 a0001c0001t0012g0027 a0001c0002t0002g0007 a0001c0002t0003g0001 a0001c0003t0005g0004	22	40	0.5500	-15	c.554 others(34): Show c.554-68278_554-68264delTAGTGAATGTTGAAT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172748880	TTTGTTGT others(8): Show TTTGTTGTTGTTGTTG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02015.hp2 others(12): Show HG01884.hp1 HG01884.hp2 HG02015.hp2 HG02145.hp2 HG02258.hp1 HG02451.hp1 HG02630.hp1 HG02735.hp2 HG02965.hp2 HG02976.hp1 HG03130.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0001c0001t0008 a0001c0001t0011 a0001c0003t0005 a0001c0004t0002	a0001c0001t0001g0015 a0001c0001t0001g0023 a0001c0001t0001g0034 others(12): Show a0001c0001t0001g0015 a0001c0001t0001g0023 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0002g0022 a0001c0001t0002g0035 a0001c0001t0002g0039 a0001c0001t0004g0002 a0001c0001t0004g0013 a0001c0001t0006g0020 a0001c0001t0008g0010 a0001c0001t0011g0031 a0001c0003t0005g0004 a0001c0004t0002g0038	15	40	0.3750	-15	c.554 others(34): Show c.554-60448_554-60434delGTTGTTGTTGTTGTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172759799	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03195.hp2 NA18522.hp2 HG01884.hp2 HG03195.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0002g0022 a0001c0001t0003g0019 a0001c0001t0004g0002 a0001c0001t0002g0022 a0001c0001t0003g0019 a0001c0001t0004g0002	3	40	0.0750	-15	c.554 others(34): Show c.554-49528_554-49514delTTTTTTTTTTTTTTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172774959	CAATAATA others(8): Show CAATAATAATAATAAT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02451.hp1 HG02630.hp1 others(5): Show HG02258.hp1 HG02451.hp1 HG02630.hp1 HG02735.hp2 HG03130.hp2 HG03139.hp1 NA18906.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0011 a0001c0002t0001	a0001c0001t0001g0015 a0001c0001t0001g0023 a0001c0001t0001g0034 others(5): Show a0001c0001t0001g0015 a0001c0001t0001g0023 a0001c0001t0001g0034 a0001c0001t0002g0035 a0001c0001t0002g0039 a0001c0001t0006g0020 a0001c0001t0011g0031 a0001c0002t0001g0016	8	40	0.2000	-15	c.554 others(34): Show c.554-34372_554-34358delTAATAATAATAATAA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172831157	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03130.hp2 HG02451.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0023 a0001c0001t0006g0020 a0001c0001t0001g0023 a0001c0001t0006g0020	2	40	0.0500	-15	c.923 others(34): Show c.923+17453_923+17467delAAAAAAAAAAAAAAA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALR1_chr18_77244848_77282900	77252956	CCATCACC others(8): Show CCATCACCACCACCAT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02723.hp2 HG02922.hp1 others(5): Show HG02055.hp1 HG02723.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03195.hp2 HG03209.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0003 a0001c0001t0008 a0001c0001t0073 others(4): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0073 a0001c0001t0079 a0001c0002t0030 a0002c0003t0036 a0002c0003t0099	a0001c0001t0003g0337 a0001c0001t0008g0340 a0001c0001t0073g0339 others(4): Show a0001c0001t0003g0337 a0001c0001t0008g0340 a0001c0001t0073g0339 a0001c0001t0079g0338 a0001c0002t0030g0140 a0002c0003t0036g0006 a0002c0003t0099g0006	8	366	0.0219	-15	c.666 others(32): Show c.666+1745_666+1759delTCACCACCACCATCA	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALR1_chr18_77244848_77282900	77259157	GTGATGAT others(8): Show GTGATGATGGTGGTGA	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00639.hp1 HG01109.hp2 others(61): Show HG00423.hp1 HG00639.hp1 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01243.hp2 HG01517.hp2 HG01891.hp2 HG01943.hp2 HG01975.hp2 HG01993.hp1 HG02027.hp2 HG02074.hp2 HG02135.hp2 HG02155.hp2 HG02258.hp1 HG02486.hp2 HG02615.hp1 HG02615.hp2 HG02683.hp2 HG02738.hp2 HG02886.hp2 HG02922.hp1 HG03130.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03486.hp2 HG03490.hp2 HG03492.hp2 HG03579.hp2 HG03688.hp2 HG03834.hp1 HG04184.hp2 HG06807.hp1 NA18747.hp1 NA18940.hp1 NA18942.hp2 NA18944.hp1 NA18947.hp2 NA18948.hp1 NA18950.hp2 NA18951.hp1 NA18953.hp1 NA18956.hp1 NA18961.hp1 NA18961.hp2 NA18971.hp1 NA18980.hp1 NA18982.hp1 NA18984.hp1 NA18986.hp1 NA18994.hp1 NA19011.hp1 NA19054.hp2 NA19056.hp1 NA19057.hp2 NA19062.hp2 NA19079.hp1 NA19084.hp2 NA19085.hp1 NA19090.hp1 NA19240.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0002c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(33): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0026 a0001c0001t0027 a0001c0001t0033 a0001c0001t0034 a0001c0001t0040 a0001c0001t0077 a0001c0001t0078 a0001c0001t0079 a0001c0001t0086 a0001c0001t0087 a0001c0001t0088 a0001c0001t0091 a0001c0001t0093 a0001c0001t0097 a0001c0001t0107 a0001c0001t0113 a0001c0001t0146 a0001c0001t0151 a0001c0002t0002 a0001c0002t0055 a0001c0002t0118 a0001c0002t0130 a0001c0002t0131 a0001c0002t0138 a0001c0002t0141 a0001c0004t0132 a0002c0003t0014 a0002c0006t0117	a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0081 others(60): Show a0001c0001t0001g0073 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0116 a0001c0001t0001g0119 a0001c0001t0003g0087 a0001c0001t0003g0259 a0001c0001t0003g0266 a0001c0001t0003g0268 a0001c0001t0003g0291 a0001c0001t0005g0223 a0001c0001t0006g0054 a0001c0001t0006g0082 a0001c0001t0006g0091 a0001c0001t0006g0124 a0001c0001t0008g0156 a0001c0001t0008g0298 a0001c0001t0008g0340 a0001c0001t0009g0090 a0001c0001t0010g0277 a0001c0001t0011g0092 a0001c0001t0011g0120 a0001c0001t0011g0123 a0001c0001t0011g0252 a0001c0001t0026g0031 a0001c0001t0027g0008 a0001c0001t0033g0075 a0001c0001t0033g0209 a0001c0001t0034g0106 a0001c0001t0034g0108 a0001c0001t0040g0101 a0001c0001t0040g0118 a0001c0001t0077g0274 a0001c0001t0078g0111 a0001c0001t0079g0338 a0001c0001t0086g0255 a0001c0001t0087g0099 a0001c0001t0088g0077 a0001c0001t0091g0272 a0001c0001t0093g0113 a0001c0001t0097g0153 a0001c0001t0107g0107 a0001c0001t0113g0063 a0001c0001t0146g0241 a0001c0001t0151g0104 a0001c0002t0002g0134 a0001c0002t0055g0215 a0001c0002t0055g0216 a0001c0002t0118g0313 a0001c0002t0130g0162 a0001c0002t0131g0247 a0001c0002t0138g0227 a0001c0002t0141g0193 a0001c0004t0132g0333 a0002c0003t0014g0263 a0002c0006t0117g0314	64	366	0.1749	-15	c.732 others(32): Show c.732+2940_732+2954delATGGTGGTGATGATG	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALR1_chr18_77244848_77282900	77259169	GTGATGAT others(8): Show GTGATGATGGTGGTGA	G G	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0328 a0001c0004t0004g0328	1	366	0.0027	-15	c.732 others(32): Show c.732+2952_732+2966delATGGTGGTGATGATG	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALR1_chr18_77244848_77282900	77259251	ACAGTGGT others(8): Show ACAGTGGTGGTGGTGT	A A	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA19056.hp1 NA18984.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0119 a0001c0001t0011g0120 a0001c0001t0001g0119 a0001c0001t0011g0120	2	366	0.0055	-15	c.732 others(32): Show c.732+3029_732+3043delCAGTGGTGGTGGTGT	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	2/2			chr18	TogoVar
GALR1_chr18_77244848_77282900	77259269	GTGTTGGT others(8): Show GTGTTGGTGGTGGTCA	G G	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0066 a0001c0001t0016g0066	1	366	0.0027	-15	c.732 others(32): Show c.732+3049_732+3063delTTGGTGGTGGTCATG	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALR3_chr22_37818382_37830485	37821384	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 HG02572.hp2 HG02258.hp2 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	2	402	0.0050	-15	c.-20 others(26): Show c.-2022_-2008delTTTTTTTTTTTTTTT	GALR3	ENSG00000128310.3	transcript	ENST00000249041.3	protein_coding		1997		chr22	TogoVar
GALT_chr9_34641675_34656035	34644302	TATATATA others(8): Show TATATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0016 a0001c0011t0001g0016	1	416	0.0024	-15	c.-24 others(26): Show c.-2402_-2388delATATATATATATATA	GALT	ENSG00000213930.12	transcript	ENST00000378842.8	protein_coding		2372		chr9	TogoVar
GALT_chr9_34641675_34656035	34644333	ATATATAT others(8): Show ATATATATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18957.hp2 NA18990.hp1 NA18957.hp2 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	416	0.0048	-15	c.-23 others(26): Show c.-2371_-2357delTATATATATATATAT	GALT	ENSG00000213930.12	transcript	ENST00000378842.8	protein_coding		2341		chr9	TogoVar
GAP43_chr3_115618510_115726483	115652356	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02809.hp2 others(3): Show HG01884.hp1 HG02055.hp2 HG02809.hp2 HG03486.hp1 NA18951.hp1 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0001 a0001c0001t0002 a0001c0001t0005	a0001c0001t0001g0135 a0001c0001t0001g0296 a0001c0001t0001g0339 others(3): Show a0001c0001t0001g0135 a0001c0001t0001g0296 a0001c0001t0001g0339 a0001c0001t0002g0136 a0001c0001t0005g0340 a0001c0001t0005g0341	6	352	0.0171	-15	c.31- others(32): Show c.31-23642_31-23628delTTTTTTTTTTTTTTT	GAP43	ENSG00000172020.13	transcript	ENST00000305124.11	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr3	TogoVar
GAPVD1_chr9_125256826_125372207	125293871	TATATATA others(8): Show TATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	340	0.0029	-15	c.-14 others(34): Show c.-149-1586_-149-1572delATATATATATATATA	GAPVD1	ENSG00000165219.23	transcript	ENST00000297933.11	protein_coding	2/27			chr9	TogoVar
GAPVD1_chr9_125256826_125372207	125300039	ATATATAT others(8): Show ATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01123.hp1 HG01167.hp2 others(19): Show HG00544.hp2 HG01123.hp1 HG01167.hp2 HG01192.hp2 HG01255.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01361.hp2 HG02027.hp1 HG03139.hp2 HG03492.hp2 HG03834.hp2 NA18939.hp1 NA18964.hp1 NA18968.hp1 NA18978.hp1 NA18979.hp2 NA18990.hp1 NA19054.hp1 NA19087.hp2 NA20905.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0007c0009 a0001c0001 a0001c0002 a0007c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0002t0003 a0001c0002t0007 a0001c0002t0038 a0007c0009t0003	a0001c0001t0001g0045 a0001c0001t0001g0202 a0001c0001t0001g0264 others(19): Show a0001c0001t0001g0045 a0001c0001t0001g0202 a0001c0001t0001g0264 a0001c0001t0002g0014 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0078 a0001c0001t0002g0090 a0001c0001t0002g0098 a0001c0001t0008g0112 a0001c0002t0003g0004 a0001c0002t0003g0123 a0001c0002t0007g0124 a0001c0002t0007g0129 a0001c0002t0007g0135 a0001c0002t0007g0136 a0001c0002t0007g0142 a0001c0002t0007g0143 a0001c0002t0007g0149 a0001c0002t0007g0150 a0001c0002t0038g0141 a0007c0009t0003g0132	22	340	0.0647	-15	c.185 others(30): Show c.185+934_185+948delTATATATATATATAT	GAPVD1	ENSG00000165219.23	transcript	ENST00000297933.11	protein_coding	4/27			chr9	TogoVar
GAREM1_chr18_32258522_32475882	32364013	TATATATA others(8): Show TATATATATATATATG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp2 HG01070.hp1 others(11): Show HG00099.hp1 HG00323.hp2 HG01070.hp1 HG01071.hp2 HG01167.hp2 HG01169.hp1 HG01891.hp1 HG02132.hp2 HG02280.hp1 HG02896.hp2 HG03041.hp2 HG03710.hp2 NA18948.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0020 a0001c0021 a0002c0006	a0001c0001t0001 a0001c0002t0001 a0001c0003t0003 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0003 a0001c0003t0017 a0001c0003t0025 a0001c0020t0003 a0001c0021t0002 a0002c0006t0011	a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0151 others(11): Show a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0151 a0001c0001t0001g0184 a0001c0002t0001g0040 a0001c0003t0003g0101 a0001c0003t0003g0147 a0001c0003t0003g0155 a0001c0003t0017g0102 a0001c0003t0025g0146 a0001c0020t0003g0041 a0001c0021t0002g0105 a0001c0021t0002g0136 a0002c0006t0011g0103	14	192	0.0729	-15	c.262 others(34): Show c.262+28867_262+28881delCATATATATATATAT	GAREM1	ENSG00000141441.16	transcript	ENST00000269209.7	protein_coding	2/5			chr18	TogoVar
GAREM1_chr18_32258522_32475882	32364014	ATATATAT others(8): Show ATATATATATATATGT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02922.hp1 HG02258.hp2 HG02922.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0011 a0002c0005t0011	a0002c0005t0011g0047 a0002c0005t0011g0065 a0002c0005t0011g0047 a0002c0005t0011g0065	2	192	0.0104	-15	c.262 others(34): Show c.262+28866_262+28880delACATATATATATATA	GAREM1	ENSG00000141441.16	transcript	ENST00000269209.7	protein_coding	2/5			chr18	TogoVar
GAREM1_chr18_32258522_32475882	32364016	ATATATAT others(8): Show ATATATATATATGTTT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02647.hp1 HG02723.hp1 others(2): Show HG02572.hp1 HG02647.hp1 HG02723.hp1 HG02886.hp2 NA19043.hp2	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0002 a0002c0005 a0008c0028 a0001c0002 a0002c0005 a0008c0028	a0001c0002t0003 a0001c0002t0021 a0002c0005t0037 others(1): Show a0001c0002t0003 a0001c0002t0021 a0002c0005t0037 a0008c0028t0003	a0001c0002t0003g0061 a0001c0002t0003g0062 a0001c0002t0021g0001 others(2): Show a0001c0002t0003g0061 a0001c0002t0003g0062 a0001c0002t0021g0001 a0002c0005t0037g0048 a0008c0028t0003g0042	5	192	0.0260	-15	c.262 others(34): Show c.262+28864_262+28878delAAACATATATATATA	GAREM1	ENSG00000141441.16	transcript	ENST00000269209.7	protein_coding	2/5			chr18	TogoVar
GAREM1_chr18_32258522_32475882	32364020	ATATATAT others(8): Show ATATATATGTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0043 a0001c0002t0007g0043	1	192	0.0052	-15	c.262 others(34): Show c.262+28860_262+28874delAAAAAAACATATATA	GAREM1	ENSG00000141441.16	transcript	ENST00000269209.7	protein_coding	2/5			chr18	TogoVar
GAREM1_chr18_32258522_32475882	32436722	ATTCTGAT others(8): Show ATTCTGATTACGCAGT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp2 HG02615.hp1 others(4): Show HG02055.hp2 HG02451.hp2 HG02615.hp1 HG02965.hp2 HG03471.hp1 NA19043.hp1 NA19240.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0012 a0001c0003t0003 a0001c0003t0012	a0001c0003t0003g0178 a0001c0003t0003g0185 a0001c0003t0003g0188 others(4): Show a0001c0003t0003g0178 a0001c0003t0003g0185 a0001c0003t0003g0188 a0001c0003t0003g0189 a0001c0003t0003g0191 a0001c0003t0012g0187 a0001c0003t0012g0190	7	192	0.0365	-15	c.121 others(34): Show c.121+33571_121+33585delACTGCGTAATCAGAA	GAREM1	ENSG00000141441.16	transcript	ENST00000269209.7	protein_coding	1/5			chr18	TogoVar
GARRE1_chr19_34249554_34360566	34290874	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19060.hp2 NA20129.hp2 NA19060.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0004 a0001c0001t0001 a0001c0003t0004	a0001c0001t0001g0270 a0001c0003t0004g0072 a0001c0001t0001g0270 a0001c0003t0004g0072	2	326	0.0061	-15	c.-79 others(34): Show c.-795-8769_-795-8755delTTTTTTTTTTTTTTT	GARRE1	ENSG00000166398.14	transcript	ENST00000299505.8	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
GARRE1_chr19_34249554_34360566	34340438	TTTTTCTT others(8): Show TTTTTCTTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG02723.hp1 HG02965.hp1 others(1): Show HG01123.hp2 HG02723.hp1 HG02965.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0022 a0001c0001t0007 a0001c0001t0022	a0001c0001t0007g0083 a0001c0001t0007g0084 a0001c0001t0007g0146 others(1): Show a0001c0001t0007g0083 a0001c0001t0007g0084 a0001c0001t0007g0146 a0001c0001t0022g0147	4	326	0.0123	-15	c.148 others(32): Show c.1487+468_1487+482delTTTCTTTTCTTTTCT	GARRE1	ENSG00000166398.14	transcript	ENST00000299505.8	protein_coding	9/13		INFO_REALIGN_3_PRIME	chr19	TogoVar

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