Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHN2_chr7_29189775_29519328	29412334	TTTTTTTT others(8): Show TTTTTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0122 a0001c0002t0004g0122	1	230	0.0043	-15	c.576 others(34): Show c.576+11507_576+11521delTTTTTTTTTTTTTTG	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12			chr7	TogoVar
CHN2_chr7_29189775_29519328	29440684	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp1 HG03579.hp2 NA19030.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0061 a0002c0003t0002g0151 a0002c0003t0002g0061 a0002c0003t0002g0151	2	139	0.0144	-15	c.577 others(34): Show c.577-39581_577-39567delAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29482797	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00597.hp1 HG01109.hp1 others(28): Show HG00438.hp2 HG00597.hp1 HG01109.hp1 HG01928.hp1 HG01934.hp1 HG02055.hp1 HG02071.hp2 HG02074.hp1 HG02109.hp2 HG02129.hp1 HG02148.hp1 HG02165.hp1 HG02273.hp1 HG02615.hp1 HG02818.hp1 HG02922.hp2 HG03225.hp1 HG03471.hp1 HG03579.hp2 NA18906.hp2 NA18942.hp2 NA18982.hp1 NA18998.hp2 NA19000.hp2 NA19005.hp1 NA19030.hp1 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19085.hp1 NA21309.hp2	a0002 a0002	a0002c0003 a0002c0004 a0002c0009 a0002c0003 a0002c0004 a0002c0009	a0002c0003t0002 a0002c0003t0004 a0002c0003t0018 others(8): Show a0002c0003t0002 a0002c0003t0004 a0002c0003t0018 a0002c0003t0021 a0002c0004t0001 a0002c0004t0005 a0002c0004t0006 a0002c0004t0007 a0002c0004t0012 a0002c0004t0017 a0002c0009t0002	a0002c0003t0002g0044 a0002c0003t0002g0061 a0002c0003t0002g0112 others(28): Show a0002c0003t0002g0044 a0002c0003t0002g0061 a0002c0003t0002g0112 a0002c0003t0002g0151 a0002c0003t0004g0013 a0002c0003t0004g0027 a0002c0003t0004g0033 a0002c0003t0004g0036 a0002c0003t0004g0054 a0002c0003t0004g0055 a0002c0003t0004g0081 a0002c0003t0004g0086 a0002c0003t0004g0088 a0002c0003t0004g0166 a0002c0003t0004g0195 a0002c0003t0018g0077 a0002c0003t0021g0116 a0002c0004t0001g0023 a0002c0004t0001g0095 a0002c0004t0001g0184 a0002c0004t0001g0203 a0002c0004t0005g0159 a0002c0004t0005g0165 a0002c0004t0005g0216 a0002c0004t0006g0119 a0002c0004t0007g0041 a0002c0004t0007g0087 a0002c0004t0007g0106 a0002c0004t0012g0126 a0002c0004t0017g0068 a0002c0009t0002g0018	31	37	0.8378	-15	c.654 others(32): Show c.654+2469_654+2483delTTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23750922	TTTCTTTC others(8): Show TTTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18981.hp1 NA18981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	390	0.0026	-15	c.-41 others(26): Show c.-4127_-4113delTTCTTTCTTTCTTTC	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4103		chr16	TogoVar
CHRDL1_chrX_110668856_110800817	110684636	GAGCATGC others(8): Show GAGCATGCTGGCAAGT	G G	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02040.hp1 NA19009.hp1 HG00621.hp1 HG02040.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031	3	170	0.0176	-15	c.989 others(32): Show c.989-3002_989-2988delACTTGCCAGCATGCT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	9/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110767598	CAATAAAA others(8): Show CAATAAAATAAAATAA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG03139.hp1 HG04228.hp1 HG01192.hp1 HG03139.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0010 a0001c0002t0011 a0001c0001t0002 a0001c0001t0010 a0001c0002t0011	a0001c0001t0002g0047 a0001c0001t0010g0054 a0001c0002t0011g0055 a0001c0001t0002g0047 a0001c0001t0010g0054 a0001c0002t0011g0055	3	38	0.0789	-15	c.95- others(30): Show c.95-4806_95-4792delTTATTTTATTTTATT	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	2/11			chrX	TogoVar
CHRD_chr3_184375054_184394829	184385666	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03831.hp2 HG03486.hp1 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0008t0001 a0001c0001t0001 a0001c0008t0001	a0001c0001t0001g0092 a0001c0008t0001g0115 a0001c0001t0001g0092 a0001c0008t0001g0115	2	156	0.0128	-15	c.181 others(32): Show c.1819-365_1819-351delAAAAAAAAAAAAAAA	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding	14/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHRD_chr3_184375054_184394829	184390191	TCCCTCCC others(8): Show TCCCTCCCCTCCCCTC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp1 HG01123.hp1 HG00323.hp1 HG01123.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0025 a0001c0003t0001g0031 a0001c0003t0001g0025 a0001c0003t0001g0031	2	241	0.0083	-15	c.77 others(24): Show c.770_*784delCCCTCCCCTCCCCTC	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding		363		chr3	TogoVar
CHRM2_chr7_136863652_137025213	136938915	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01069.hp2 HG01070.hp1 others(12): Show HG00621.hp1 HG01069.hp2 HG01070.hp1 HG01074.hp2 HG01167.hp2 HG01169.hp2 HG02132.hp1 HG02132.hp2 HG02280.hp1 HG02280.hp2 HG03017.hp1 HG03453.hp1 HG03492.hp1 NA18941.hp2 NA19072.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0003c0007 a0001c0001 a0001c0003 a0003c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0016 a0001c0001t0048 a0001c0001t0062 a0001c0001t0067 a0001c0003t0028 a0003c0007t0001	a0001c0001t0001g0037 a0001c0001t0001g0130 a0001c0001t0001g0138 others(12): Show a0001c0001t0001g0037 a0001c0001t0001g0130 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0188 a0001c0001t0002g0147 a0001c0001t0002g0151 a0001c0001t0003g0235 a0001c0001t0004g0090 a0001c0001t0016g0256 a0001c0001t0048g0049 a0001c0001t0062g0309 a0001c0001t0067g0150 a0001c0003t0028g0064 a0003c0007t0001g0156	15	30	0.5000	-15	c.-12 others(36): Show c.-124-53238_-124-53224delAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137000626	GCTTTCCT others(8): Show GCTTTCCTTAACCTAC	G G	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02818.hp2 HG02895.hp2 others(9): Show HG01074.hp2 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG02970.hp1 HG03139.hp2 HG03486.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp1 NA19043.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0014 a0001c0001t0023 others(4): Show a0001c0001t0013 a0001c0001t0014 a0001c0001t0023 a0001c0001t0031 a0001c0001t0039 a0001c0001t0049 a0001c0001t0062	a0001c0001t0013g0069 a0001c0001t0013g0070 a0001c0001t0013g0071 others(9): Show a0001c0001t0013g0069 a0001c0001t0013g0070 a0001c0001t0013g0071 a0001c0001t0013g0248 a0001c0001t0014g0072 a0001c0001t0014g0093 a0001c0001t0023g0246 a0001c0001t0031g0010 a0001c0001t0031g0096 a0001c0001t0039g0317 a0001c0001t0049g0117 a0001c0001t0062g0309	12	318	0.0377	-15	c.-47 others(32): Show c.-47+8386_-47+8400delAACCTACCTTTCCTT	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239531639	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp2 HG01256.hp2 others(8): Show HG00438.hp1 HG00609.hp2 HG01256.hp2 HG01258.hp1 HG01433.hp1 HG02451.hp1 HG02818.hp1 HG03098.hp1 HG06807.hp1 NA18939.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0021 a0001c0001t0028 a0001c0001t0032 a0001c0001t0042 a0001c0001t0059	a0001c0001t0001g0005 a0001c0001t0002g0037 a0001c0001t0002g0051 others(8): Show a0001c0001t0001g0005 a0001c0001t0002g0037 a0001c0001t0002g0051 a0001c0001t0003g0092 a0001c0001t0005g0077 a0001c0001t0007g0059 a0001c0001t0021g0093 a0001c0001t0028g0017 a0001c0001t0032g0086 a0001c0001t0042g0080 a0001c0001t0059g0001	11	23	0.4783	-15	c.-42 others(36): Show c.-421-13979_-421-13965delTTTTTTTTTTTTTTT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239699250	ATGTTGAA others(8): Show ATGTTGAAGCGTAACT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp2 HG00609.hp1 others(33): Show HG00140.hp1 HG00438.hp2 HG00609.hp1 HG00738.hp1 HG01106.hp1 HG01106.hp2 HG01346.hp2 HG01433.hp1 HG01496.hp1 HG01981.hp1 HG02040.hp2 HG02083.hp1 HG02109.hp2 HG02258.hp1 HG02735.hp1 HG02738.hp2 HG02970.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp1 HG03209.hp2 HG03540.hp2 HG03710.hp1 HG03927.hp1 HG04115.hp2 NA18906.hp2 NA18943.hp2 NA18944.hp2 NA19000.hp1 NA19043.hp1 NA19068.hp1 NA19068.hp2 NA19240.hp1 NA20752.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0020 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0033 a0001c0001t0036 a0001c0001t0037 a0001c0001t0042 a0001c0001t0044 a0001c0001t0048 a0001c0001t0050 a0001c0001t0051 a0001c0001t0056 a0001c0001t0058 a0002c0002t0002	a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0054 others(33): Show a0001c0001t0001g0002 a0001c0001t0001g0008 a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0083 a0001c0001t0002g0057 a0001c0001t0002g0062 a0001c0001t0002g0107 a0001c0001t0003g0047 a0001c0001t0003g0066 a0001c0001t0004g0016 a0001c0001t0005g0041 a0001c0001t0005g0053 a0001c0001t0006g0044 a0001c0001t0007g0059 a0001c0001t0009g0038 a0001c0001t0015g0075 a0001c0001t0015g0095 a0001c0001t0016g0114 a0001c0001t0018g0022 a0001c0001t0020g0035 a0001c0001t0023g0007 a0001c0001t0024g0088 a0001c0001t0025g0097 a0001c0001t0033g0090 a0001c0001t0036g0018 a0001c0001t0037g0029 a0001c0001t0042g0080 a0001c0001t0044g0104 a0001c0001t0048g0108 a0001c0001t0050g0034 a0001c0001t0051g0105 a0001c0001t0056g0084 a0001c0001t0058g0061 a0002c0002t0002g0011	36	114	0.3158	-15	c.-14 others(36): Show c.-147+20963_-147+20977delTGTTGAAGCGTAACT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	5/6			chr1	TogoVar
CHRM3_chr1_239381568_239920450	239847536	TGGGAAAA others(8): Show TGGGAAAAATAAGTCA	T T	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02818.hp1 HG03195.hp1 others(3): Show HG02723.hp2 HG02818.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0009 a0001c0001t0018 others(3): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0018 a0001c0001t0019 a0001c0001t0038 a0001c0001t0059	a0001c0001t0003g0039 a0001c0001t0009g0111 a0001c0001t0018g0022 others(3): Show a0001c0001t0003g0039 a0001c0001t0009g0111 a0001c0001t0018g0022 a0001c0001t0019g0025 a0001c0001t0038g0032 a0001c0001t0059g0001	6	114	0.0526	-15	c.-20 others(34): Show c.-20+20174_-20+20188delGGGAAAAATAAGTCA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM5_chr15_33963497_34072458	34024139	CCAGGCAT others(8): Show CCAGGCATTAGTCAGT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG00408.hp1 others(150): Show HG00140.hp2 HG00323.hp1 HG00408.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp2 HG00609.hp1 HG00642.hp1 HG00741.hp1 HG01081.hp1 HG01109.hp1 HG01168.hp1 HG01175.hp1 HG01346.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01978.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02074.hp2 HG02080.hp1 HG02129.hp2 HG02132.hp1 HG02145.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02698.hp2 HG02717.hp1 HG02723.hp2 HG02735.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG03927.hp2 HG04115.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp2 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18941.hp2 NA18942.hp1 NA18943.hp1 NA18945.hp2 NA18946.hp1 NA18952.hp1 NA18959.hp2 NA18960.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18969.hp1 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp1 NA18977.hp2 NA18979.hp1 NA18980.hp2 NA18983.hp1 NA18985.hp2 NA18986.hp2 NA18987.hp1 NA18988.hp2 NA18990.hp1 NA18991.hp2 NA18992.hp1 NA18993.hp1 NA18995.hp2 NA18999.hp2 NA19001.hp1 NA19005.hp2 NA19007.hp1 NA19009.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19060.hp1 NA19063.hp2 NA19064.hp2 NA19066.hp1 NA19068.hp2 NA19074.hp2 NA19076.hp1 NA19078.hp2 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19088.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0010 others(1): Show a0001c0001 a0001c0002 a0002c0010 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 a0001c0001t0022 a0001c0001t0023 a0001c0001t0025 a0001c0001t0027 a0001c0001t0036 a0001c0001t0037 a0001c0002t0001 a0001c0002t0005 a0002c0010t0011 a0003c0004t0003	a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 others(145): Show a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0120 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0141 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0198 a0001c0001t0001g0200 a0001c0001t0001g0203 a0001c0001t0001g0214 a0001c0001t0001g0237 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0322 a0001c0001t0001g0324 a0001c0001t0001g0325 a0001c0001t0001g0326 a0001c0001t0001g0327 a0001c0001t0002g0128 a0001c0001t0003g0012 a0001c0001t0003g0013 a0001c0001t0003g0025 a0001c0001t0003g0027 a0001c0001t0003g0028 a0001c0001t0003g0288 a0001c0001t0003g0289 a0001c0001t0003g0290 a0001c0001t0003g0300 a0001c0001t0003g0302 a0001c0001t0003g0303 a0001c0001t0003g0304 a0001c0001t0003g0305 a0001c0001t0003g0308 a0001c0001t0003g0310 a0001c0001t0003g0312 a0001c0001t0003g0313 a0001c0001t0003g0314 a0001c0001t0003g0315 a0001c0001t0003g0316 a0001c0001t0004g0066 a0001c0001t0004g0180 a0001c0001t0004g0205 a0001c0001t0009g0024 a0001c0001t0009g0026 a0001c0001t0009g0050 a0001c0001t0009g0051 a0001c0001t0009g0301 a0001c0001t0009g0311 a0001c0001t0010g0052 a0001c0001t0010g0306 a0001c0001t0011g0238 a0001c0001t0011g0278 a0001c0001t0011g0279 a0001c0001t0014g0055 a0001c0001t0014g0309 a0001c0001t0015g0294 a0001c0001t0015g0295 a0001c0001t0015g0297 a0001c0001t0015g0298 a0001c0001t0020g0165 a0001c0001t0020g0166 a0001c0001t0020g0167 a0001c0001t0022g0299 a0001c0001t0022g0307 a0001c0001t0023g0053 a0001c0001t0023g0054 a0001c0001t0025g0006 a0001c0001t0027g0044 a0001c0001t0036g0179 a0001c0001t0037g0068 a0001c0002t0001g0060 a0001c0002t0005g0002 a0001c0002t0005g0062 a0002c0010t0011g0263 a0003c0004t0003g0318 a0003c0004t0003g0319 a0003c0004t0003g0320	153	336	0.4554	-15	c.-40 others(36): Show c.-407-22400_-407-22386delCAGGCATTAGTCAGT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	1/2			chr15	TogoVar
CHRM5_chr15_33963497_34072458	34052096	CAATGAAA others(8): Show CAATGAAATACTGGCA	C C	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0015 a0001c0001t0010g0015	1	336	0.0030	-15	c.-76 others(32): Show c.-76+5234_-76+5248delACTGGCAAATGAAAT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRM5_chr15_33963497_34072458	34059737	ACTTCATT others(8): Show ACTTCATTCTTCAAGT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02896.hp1 HG03041.hp2 others(2): Show HG01884.hp2 HG02896.hp1 HG03041.hp2 HG04184.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0010 a0001c0001t0004 a0001c0001t0010	a0001c0001t0004g0066 a0001c0001t0004g0205 a0001c0001t0010g0015 others(2): Show a0001c0001t0004g0066 a0001c0001t0004g0205 a0001c0001t0010g0015 a0001c0001t0010g0052 a0001c0001t0010g0306	5	336	0.0149	-15	c.-75 others(32): Show c.-75-2903_-75-2889delTCATTCTTCAAGTCT	CHRM5	ENSG00000184984.10	transcript	ENST00000383263.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNA1_chr2_174742592_174769472	174768044	ATATGTTT others(8): Show ATATGTTTACATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0145	1	368	0.0027	-15	c.-36 others(26): Show c.-3665_-3651delATATATGTAAACATA	CHRNA1	ENSG00000138435.16	transcript	ENST00000348749.9	protein_coding		3573		chr2	TogoVar
CHRNA2_chr8_27454756_27484261	27476954	GAGGGTGT others(8): Show GAGGGTGTGGGGAAGA	G G	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0101 a0003c0003t0002g0101	1	456	0.0022	-15	c.-13 others(34): Show c.-137+1855_-137+1869delTCTTCCCCACACCCT	CHRNA2	ENSG00000120903.13	transcript	ENST00000407991.3	protein_coding	1/6			chr8	TogoVar
CHRNA4_chr20_63338223_63366349	63357173	TCCCACAG others(8): Show TCCCACAGGACCACAA	T T	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01258.hp1 HG02015.hp1 others(15): Show HG00544.hp2 HG01258.hp1 HG02015.hp1 HG02129.hp2 HG02630.hp2 HG03017.hp2 HG03239.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp2 HG03834.hp1 HG04115.hp1 HG04204.hp2 HG04228.hp2 NA18612.hp2 NA18747.hp2 NA19043.hp2 NA19064.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0004 a0002c0017 a0001c0003 a0001c0004 a0002c0017	a0001c0003t0002 a0001c0004t0002 a0001c0004t0005 others(3): Show a0001c0003t0002 a0001c0004t0002 a0001c0004t0005 a0001c0004t0027 a0001c0004t0028 a0002c0017t0005	a0001c0003t0002g0035 a0001c0004t0002g0007 a0001c0004t0002g0016 others(14): Show a0001c0003t0002g0035 a0001c0004t0002g0007 a0001c0004t0002g0016 a0001c0004t0002g0046 a0001c0004t0002g0047 a0001c0004t0002g0048 a0001c0004t0002g0049 a0001c0004t0002g0065 a0001c0004t0002g0071 a0001c0004t0005g0013 a0001c0004t0005g0044 a0001c0004t0005g0045 a0001c0004t0005g0069 a0001c0004t0005g0070 a0001c0004t0027g0128 a0001c0004t0028g0135 a0002c0017t0005g0014	18	166	0.1084	-15	c.229 others(30): Show c.229-773_229-759delTTGTGGTCCTGTGGG	CHRNA4	ENSG00000101204.18	transcript	ENST00000370263.9	protein_coding	2/5			chr20	TogoVar
CHRNA7_chr15_32025515_32178018	32070669	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02922.hp2 HG03225.hp1 HG02630.hp1 HG02922.hp2 HG03225.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0015 a0001c0001 a0003c0015	a0001c0001t0001 a0001c0001t0029 a0003c0015t0025 a0001c0001t0001 a0001c0001t0029 a0003c0015t0025	a0001c0001t0001g0211 a0001c0001t0029g0212 a0003c0015t0025g0207 a0001c0001t0001g0211 a0001c0001t0029g0212 a0003c0015t0025g0207	3	11	0.2727	-15	c.196 others(34): Show c.196-30613_196-30599delTTTTTTTTTTTTTTT	CHRNA7	ENSG00000175344.19	transcript	ENST00000306901.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHRNB1_chr17_7440061_7462710	7446302	TTTGTGTG others(8): Show TTTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0258 a0001c0001t0001g0258	1	366	0.0027	-15	c.243 others(30): Show c.243+191_243+205delTGTGTGTGTGTGTGT	CHRNB1	ENSG00000170175.11	transcript	ENST00000306071.7	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
CHRNB3_chr8_42692366_42742407	42709404	TAGAAGAA others(8): Show TAGAAGAAACCAGTGA	T T	intron_variant intron_variant	MODIFIER	HG02258.hp1 NA19030.hp2 HG02258.hp1 NA19030.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0030 a0001c0004t0007g0031 a0001c0004t0007g0030 a0001c0004t0007g0031	2	280	0.0071	-15	c.204 others(30): Show c.204+538_204+552delGAAGAAACCAGTGAA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42720111	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01074.hp2 HG01192.hp1 others(28): Show HG00673.hp1 HG01074.hp2 HG01192.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp2 HG02145.hp2 HG02523.hp2 HG02615.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02896.hp2 HG03017.hp1 HG03195.hp1 HG03225.hp2 HG03540.hp1 HG03579.hp2 HG03654.hp2 HG03831.hp2 NA18747.hp2 NA18939.hp1 NA18944.hp1 NA18946.hp1 NA18953.hp1 NA18975.hp2 NA18980.hp2 NA18989.hp1 NA19060.hp1 NA20905.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0013 a0001c0003t0001	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0018 others(27): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0256 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0268 a0001c0001t0002g0227 a0001c0001t0003g0035 a0001c0001t0013g0012 a0001c0003t0001g0142 a0001c0003t0001g0143 a0001c0003t0001g0144	31	55	0.5636	-15	c.249 others(32): Show c.249+9697_249+9711delTTTTTTTTTTTTTTT	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB3_chr8_42692366_42742407	42721722	CAAACAAA others(8): Show CAAACAAAACAAAACA	C C	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02257.hp2 HG02004.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0111 a0001c0001t0001g0101 a0001c0001t0001g0111	2	60	0.0333	-15	c.250 others(32): Show c.250-8846_250-8832delAAACAAAACAAAACA	CHRNB3	ENSG00000147432.7	transcript	ENST00000289957.3	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHRNB4_chr15_78619111_78646210	78632232	TCTCTCTC others(8): Show TCTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0023 a0001c0001t0010g0023	1	414	0.0024	-15	c.205 others(30): Show c.205-915_205-901delGAGAGAGAGAGAGAG	CHRNB4	ENSG00000117971.12	transcript	ENST00000261751.8	protein_coding	2/5			chr15	TogoVar
CHST11_chr12_104451948_104767014	104750442	TTTTTTTT others(8): Show TTTTTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02451.hp1 HG02818.hp2 others(1): Show HG02257.hp1 HG02451.hp1 HG02818.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0040 a0001c0001t0060 others(1): Show a0001c0001t0039 a0001c0001t0040 a0001c0001t0060 a0001c0001t0067	a0001c0001t0039g0094 a0001c0001t0040g0162 a0001c0001t0060g0154 others(1): Show a0001c0001t0039g0094 a0001c0001t0040g0162 a0001c0001t0060g0154 a0001c0001t0067g0054	4	238	0.0168	-15	c.205 others(32): Show c.205-6504_205-6490delTTTTTTTTTTTTGTT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST12_chr7_2398611_2453484	2434579	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0251 a0001c0001t0251	a0001c0001t0251g0270 a0001c0001t0251g0270	1	15	0.0667	-15	c.71 others(24): Show c.718_*732delAAAAAAAAAAAAAAA	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding	2/2	718	INFO_REALIGN_3_PRIME	chr7	TogoVar
CHST12_chr7_2398611_2453484	2452506	GGCCCTGC others(8): Show GGCCCTGCCCTGCCCT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG02280.hp1 HG02896.hp1 others(5): Show HG01891.hp2 HG02280.hp1 HG02896.hp1 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03486.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0240 a0001c0001t0263 a0001c0001t0264 others(5): Show a0001c0001t0240 a0001c0001t0263 a0001c0001t0264 a0001c0001t0273 a0001c0001t0275 a0001c0001t0292 a0001c0006t0035 a0001c0006t0267	a0001c0001t0240g0100 a0001c0001t0263g0107 a0001c0001t0264g0078 others(5): Show a0001c0001t0240g0100 a0001c0001t0263g0107 a0001c0001t0264g0078 a0001c0001t0273g0106 a0001c0001t0275g0108 a0001c0001t0292g0261 a0001c0006t0035g0252 a0001c0006t0267g0251	8	301	0.0266	-15	c.18 others(28): Show c.18623_*18637delGCCCTGCCCTGCCCT	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding		4023		chr7	TogoVar
CHST12_chr7_2398611_2453484	2452542	GCCCTGCC others(8): Show GCCCTGCCCTGCCCTC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp1 HG03704.hp2 HG03471.hp1 HG03704.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0196 a0004c0004t0235 a0001c0001t0196 a0004c0004t0235	a0001c0001t0196g0109 a0004c0004t0235g0010 a0001c0001t0196g0109 a0004c0004t0235g0010	2	277	0.0072	-15	c.18 others(28): Show c.18659_*18673delCCCTGCCCTGCCCTC	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding		4059		chr7	TogoVar
CHST12_chr7_2398611_2453484	2452547	GCCCTGCC others(8): Show GCCCTGCCCTCCCCTC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp2 HG00733.hp1 HG01081.hp2 others(5): Show HG00544.hp2 HG00733.hp1 HG01081.hp2 HG02886.hp2 HG03130.hp1 HG03209.hp2 HG03516.hp1 NA19063.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0007 a0001c0001 a0002c0002 a0006c0007	a0001c0001t0038 a0001c0001t0077 a0001c0001t0189 others(5): Show a0001c0001t0038 a0001c0001t0077 a0001c0001t0189 a0001c0001t0229 a0002c0002t0001 a0002c0002t0164 a0006c0007t0121 a0006c0007t0148	a0001c0001t0038g0203 a0001c0001t0077g0142 a0001c0001t0189g0120 others(5): Show a0001c0001t0038g0203 a0001c0001t0077g0142 a0001c0001t0189g0120 a0001c0001t0229g0164 a0002c0002t0001g0283 a0002c0002t0164g0030 a0006c0007t0121g0026 a0006c0007t0148g0026	8	322	0.0248	-15	c.18 others(28): Show c.18664_*18678delCCCTGCCCTCCCCTC	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding		4064		chr7	TogoVar
CHST12_chr7_2398611_2453484	2452552	GCCCTCCC others(8): Show GCCCTCCCCTCCCCTC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 HG00735.hp1 HG01070.hp1 others(23): Show HG00438.hp1 HG00735.hp1 HG01070.hp1 HG01517.hp2 HG01975.hp1 HG01978.hp2 HG02004.hp1 HG02040.hp1 HG02129.hp2 HG02148.hp2 HG02258.hp1 HG02280.hp2 HG02572.hp1 HG02602.hp1 HG02602.hp2 HG02738.hp1 HG03017.hp1 HG03239.hp1 HG03471.hp2 NA18522.hp2 NA18943.hp2 NA18948.hp1 NA18962.hp2 NA19043.hp2 NA19088.hp1 NA20752.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0005c0005	a0001c0001t0006 a0001c0001t0007 a0001c0001t0015 others(23): Show a0001c0001t0006 a0001c0001t0007 a0001c0001t0015 a0001c0001t0028 a0001c0001t0036 a0001c0001t0047 a0001c0001t0061 a0001c0001t0069 a0001c0001t0089 a0001c0001t0092 a0001c0001t0095 a0001c0001t0100 a0001c0001t0120 a0001c0001t0139 a0001c0001t0181 a0001c0001t0228 a0001c0001t0233 a0001c0001t0234 a0001c0001t0251 a0002c0002t0178 a0002c0002t0180 a0003c0003t0055 a0003c0003t0108 a0003c0003t0110 a0003c0003t0119 a0005c0005t0131	a0001c0001t0006g0019 a0001c0001t0007g0148 a0001c0001t0015g0151 others(23): Show a0001c0001t0006g0019 a0001c0001t0007g0148 a0001c0001t0015g0151 a0001c0001t0028g0053 a0001c0001t0036g0246 a0001c0001t0047g0221 a0001c0001t0061g0006 a0001c0001t0069g0220 a0001c0001t0089g0168 a0001c0001t0092g0015 a0001c0001t0095g0256 a0001c0001t0100g0255 a0001c0001t0120g0211 a0001c0001t0139g0114 a0001c0001t0181g0035 a0001c0001t0228g0059 a0001c0001t0233g0048 a0001c0001t0234g0043 a0001c0001t0251g0270 a0002c0002t0178g0292 a0002c0002t0180g0301 a0003c0003t0055g0225 a0003c0003t0108g0199 a0003c0003t0110g0190 a0003c0003t0119g0111 a0005c0005t0131g0276	26	174	0.1494	-15	c.18 others(28): Show c.18669_*18683delCCCTCCCCTCCCCTC	CHST12	ENSG00000136213.10	transcript	ENST00000618655.2	protein_coding		4069		chr7	TogoVar
CHST15_chr10_124002668_124098598	124022833	TTGAGACA others(8): Show TTGAGACAGAGTTTCA	T T	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0015 a0001c0001t0018g0015	1	390	0.0026	-15	c.119 others(34): Show c.1191-1436_1191-1422delTGAAACTCTGTCTCA	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124045112	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0014 a0001c0013t0014	a0001c0013t0014g0099 a0001c0013t0014g0099	1	279	0.0036	-15	c.547 others(30): Show c.547-208_547-194delTTTTTTTTTTTTTTT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	2/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124063663	AAGTTTCA others(8): Show AAGTTTCAGTATTCAG	A A	intron_variant intron_variant	MODIFIER	NA18989.hp1 NA18989.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0338 a0001c0002t0001g0338	1	390	0.0026	-15	c.-51 others(36): Show c.-512-16954_-512-16940delCTGAATACTGAAACT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	1/7			chr10	TogoVar
CHST8_chr19_33616953_33778506	33618406	TTCTTCTT others(8): Show TTCTTCTTCTTCTTCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01255.hp2 HG01258.hp1 HG01358.hp2 others(14): Show HG01255.hp2 HG01258.hp1 HG01358.hp2 HG02132.hp2 HG02486.hp2 HG02698.hp1 HG02809.hp1 HG02896.hp1 HG02965.hp2 HG03130.hp2 HG03540.hp2 HG03704.hp2 NA18906.hp2 NA18947.hp2 NA18970.hp1 NA19043.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0002t0001	a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0178 others(14): Show a0001c0001t0001g0031 a0001c0001t0001g0033 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0183 a0001c0001t0001g0191 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0228 a0001c0001t0001g0235 a0001c0001t0001g0245 a0001c0001t0001g0252 a0001c0001t0002g0044 a0001c0001t0004g0007 a0001c0001t0007g0177 a0001c0002t0001g0210 a0001c0002t0001g0236	17	242	0.0702	-15	c.-40 others(26): Show c.-4053_-4039delTCTTCTTCTTCTTCC	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding		3546		chr19	TogoVar
CHST8_chr19_33616953_33778506	33618424	GTCTTCTT others(8): Show GTCTTCTTCTTCTTCT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 HG01243.hp1 HG01261.hp2 others(8): Show HG00544.hp1 HG01243.hp1 HG01261.hp2 HG02135.hp1 HG02922.hp2 HG03516.hp1 HG06807.hp2 NA18962.hp1 NA18970.hp2 NA18990.hp2 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0081 a0001c0001t0001g0095 a0001c0001t0001g0101 others(8): Show a0001c0001t0001g0081 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0115 a0001c0001t0001g0120 a0001c0001t0001g0123 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0165 a0001c0002t0001g0071	11	126	0.0873	-15	c.-40 others(26): Show c.-4035_-4021delTCTTCTTCTTCTTCT	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding		3528		chr19	TogoVar
CHST8_chr19_33616953_33778506	33757383	AAAAGAAG others(8): Show AAAAGAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	226	0.0044	-15	c.131 others(34): Show c.131-14023_131-14009delGAAAGAAAGAAAGAA	CHST8	ENSG00000124302.13	transcript	ENST00000650847.1	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr19	TogoVar
CHST9_chr18_26901481_27190308	26939635	CATCCAAG others(8): Show CATCCAAGGGACTGCT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03516.hp1 HG03471.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0010 a0001c0001t0027g0207 a0001c0001t0027g0010 a0001c0001t0027g0207	2	260	0.0077	-15	c.240 others(32): Show c.240+4679_240+4693delAGCAGTCCCTTGGAT	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	5/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27014453	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03139.hp1 HG03471.hp2 HG02486.hp2 HG03139.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0033 a0001c0001t0061 a0001c0001t0027 a0001c0001t0033 a0001c0001t0061	a0001c0001t0027g0207 a0001c0001t0033g0004 a0001c0001t0061g0003 a0001c0001t0027g0207 a0001c0001t0033g0004 a0001c0001t0061g0003	3	25	0.1200	-15	c.202 others(32): Show c.202+9648_202+9662delTTTTTTTTTTTTTTT	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	4/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27053130	GGAAGAAG others(8): Show GGAAGAAGAAGAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0035 a0001c0001t0028g0035	1	92	0.0109	-15	c.122 others(32): Show c.122-4642_122-4628delTTCTTCTTCTTCTTC	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	2/5			chr18	TogoVar
CHST9_chr18_26901481_27190308	27053259	AAGGAGAA others(8): Show AAGGAGAAGGAGAAGG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 NA18983.hp1 HG00738.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0024 a0001c0001t0001 a0001c0001t0024	a0001c0001t0001g0008 a0001c0001t0024g0123 a0001c0001t0001g0008 a0001c0001t0024g0123	2	229	0.0087	-15	c.122 others(32): Show c.122-4771_122-4757delCCTTCTCCTTCTCCT	CHST9	ENSG00000154080.14	transcript	ENST00000618847.5	protein_coding	2/5			chr18	TogoVar
CHSY1_chr15_101170727_101257048	101251074	CCCGGGAT others(8): Show CCCGGGATGCCGGCCG	C C	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02165.hp2 NA19056.hp1 HG02056.hp1 HG02165.hp2 NA19056.hp1	a0001 a0003 a0001 a0003	a0001c0003 a0003c0011 a0001c0003 a0003c0011	a0001c0003t0004 a0003c0011t0065 a0001c0003t0004 a0003c0011t0065	a0001c0003t0004g0193 a0001c0003t0004g0194 a0003c0011t0065g0376 a0001c0003t0004g0193 a0001c0003t0004g0194 a0003c0011t0065g0376	3	420	0.0071	-15	c.320 others(28): Show c.320+48_320+62delCGGCCGGCATCCCGG	CHSY1	ENSG00000131873.7	transcript	ENST00000254190.4	protein_coding	1/2			chr15	TogoVar
CHSY3_chr5_129899465_130191634	130020442	TATATATA others(8): Show TATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp1 HG00597.hp1 others(27): Show HG00099.hp1 HG00280.hp1 HG00597.hp1 HG00642.hp1 HG00642.hp2 HG00741.hp1 HG01099.hp1 HG01168.hp2 HG01257.hp1 HG01358.hp1 HG01516.hp1 HG02109.hp2 HG02132.hp2 HG02273.hp1 HG02523.hp1 HG02572.hp2 HG02895.hp2 HG03453.hp1 HG03710.hp2 HG04184.hp2 NA18941.hp2 NA18970.hp1 NA18977.hp2 NA18985.hp1 NA18987.hp2 NA19079.hp2 NA19080.hp1 NA19084.hp1 NA19089.hp1 NA20905.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0003 others(3): Show a0001c0001 a0001c0002 a0002c0003 a0002c0005 a0003c0004 a0003c0006	a0001c0001t0002 a0001c0002t0001 a0002c0003t0002 others(3): Show a0001c0001t0002 a0001c0002t0001 a0002c0003t0002 a0002c0005t0005 a0003c0004t0004 a0003c0006t0003	a0001c0001t0002g0187 a0001c0001t0002g0213 a0001c0002t0001g0015 others(27): Show a0001c0001t0002g0187 a0001c0001t0002g0213 a0001c0002t0001g0015 a0001c0002t0001g0028 a0001c0002t0001g0053 a0001c0002t0001g0073 a0001c0002t0001g0080 a0001c0002t0001g0081 a0001c0002t0001g0082 a0001c0002t0001g0083 a0001c0002t0001g0084 a0001c0002t0001g0087 a0001c0002t0001g0088 a0001c0002t0001g0092 a0001c0002t0001g0093 a0001c0002t0001g0094 a0001c0002t0001g0096 a0001c0002t0001g0099 a0001c0002t0001g0101 a0001c0002t0001g0113 a0001c0002t0001g0115 a0002c0003t0002g0196 a0002c0005t0005g0004 a0002c0005t0005g0009 a0003c0004t0004g0183 a0003c0004t0004g0239 a0003c0006t0003g0008 a0003c0006t0003g0077 a0003c0006t0003g0085 a0003c0006t0003g0116	30	275	0.1091	-15	c.108 others(38): Show c.1086+112083_1086+112097delATATATATATATATA	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2			chr5	TogoVar
CHSY3_chr5_129899465_130191634	130020444	TATATATA others(8): Show TATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG03195.hp2 NA18906.hp2 others(3): Show HG02280.hp2 HG03195.hp2 NA18906.hp2 NA18949.hp2 NA18986.hp2 NA19002.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0001c0008 a0002c0005 others(1): Show a0001c0002 a0001c0008 a0002c0005 a0003c0006	a0001c0002t0001 a0001c0008t0001 a0002c0005t0005 others(1): Show a0001c0002t0001 a0001c0008t0001 a0002c0005t0005 a0003c0006t0003	a0001c0002t0001g0007 a0001c0008t0001g0006 a0002c0005t0005g0005 others(3): Show a0001c0002t0001g0007 a0001c0008t0001g0006 a0002c0005t0005g0005 a0002c0005t0005g0012 a0002c0005t0005g0079 a0003c0006t0003g0086	6	270	0.0222	-15	c.108 others(38): Show c.1086+112085_1086+112099delATATATATATATATA	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2			chr5	TogoVar
CHSY3_chr5_129899465_130191634	130020446	TATATATA others(8): Show TATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18999.hp2 NA18991.hp1 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0014 a0001c0001t0002 a0001c0002t0014	a0001c0001t0002g0184 a0001c0002t0014g0021 a0001c0001t0002g0184 a0001c0002t0014g0021	2	245	0.0082	-15	c.108 others(38): Show c.1086+112087_1086+112101delATATATATATATATA	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2			chr5	TogoVar
CHSY3_chr5_129899465_130191634	130020447	ATATATAT others(8): Show ATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0231 a0001c0001t0001g0231	1	239	0.0042	-15	c.108 others(38): Show c.1086+112089_1086+112103delATATATATATATATT	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr5	TogoVar
CHSY3_chr5_129899465_130191634	130020449	ATATATAT others(8): Show ATATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0158 a0003c0004t0004g0158	1	248	0.0040	-15	c.108 others(38): Show c.1086+112091_1086+112105delATATATATATATTTT	CHSY3	ENSG00000198108.4	transcript	ENST00000305031.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr5	TogoVar
CHTF18_chr16_783620_803074	794857	CTCGTGTC others(8): Show CTCGTGTCAGTCTCTG	C C	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0007 a0007	a0007c0012 a0007c0012	a0007c0012t0003 a0007c0012t0003	a0007c0012t0003g0232 a0007c0012t0003g0232	1	426	0.0023	-15	c.195 others(32): Show c.1951-272_1951-258delGTGTCAGTCTCTGTC	CHTF18	ENSG00000127586.17	transcript	ENST00000262315.14	protein_coding	15/21		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHTF18_chr16_783620_803074	794861	TGTCAGTC others(8): Show TGTCAGTCTCTGTCAA	T T	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00642.hp1 HG00735.hp1 others(40): Show HG00558.hp2 HG00642.hp1 HG00735.hp1 HG01099.hp2 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG02055.hp1 HG02080.hp2 HG02083.hp2 HG02165.hp2 HG02257.hp1 HG02486.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02717.hp2 HG02723.hp1 HG02809.hp2 HG02895.hp1 HG02897.hp2 HG02970.hp2 HG03098.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp2 HG03669.hp2 HG03927.hp1 HG04184.hp1 HG04204.hp1 HG04204.hp2 HG04228.hp1 NA18950.hp2 NA18956.hp2 NA18969.hp1 NA18986.hp2 NA18991.hp1 NA19009.hp1 NA19012.hp1 NA19057.hp1 NA19088.hp2 NA19240.hp2 NA20905.hp1	a0003 a0004 a0006 others(11): Show a0003 a0004 a0006 a0007 a0018 a0021 a0024 a0032 a0033 a0034 a0036 a0045 a0046 a0051	a0003c0007 a0004c0021 a0006c0006 others(12): Show a0003c0007 a0004c0021 a0006c0006 a0006c0051 a0007c0012 a0018c0019 a0021c0036 a0024c0042 a0032c0052 a0033c0066 a0034c0043 a0036c0044 a0045c0049 a0046c0053 a0051c0050	a0003c0007t0001 a0004c0021t0001 a0006c0006t0001 others(12): Show a0003c0007t0001 a0004c0021t0001 a0006c0006t0001 a0006c0051t0001 a0007c0012t0003 a0018c0019t0001 a0021c0036t0004 a0024c0042t0001 a0032c0052t0001 a0033c0066t0001 a0034c0043t0001 a0036c0044t0001 a0045c0049t0001 a0046c0053t0001 a0051c0050t0001	a0003c0007t0001g0008 a0003c0007t0001g0047 a0003c0007t0001g0191 others(27): Show a0003c0007t0001g0008 a0003c0007t0001g0047 a0003c0007t0001g0191 a0003c0007t0001g0192 a0004c0021t0001g0027 a0004c0021t0001g0058 a0006c0006t0001g0015 a0006c0006t0001g0020 a0006c0006t0001g0030 a0006c0006t0001g0077 a0006c0006t0001g0078 a0006c0006t0001g0080 a0006c0006t0001g0082 a0006c0006t0001g0083 a0006c0051t0001g0081 a0007c0012t0003g0054 a0007c0012t0003g0055 a0018c0019t0001g0093 a0018c0019t0001g0094 a0018c0019t0001g0095 a0021c0036t0004g0032 a0024c0042t0001g0235 a0024c0042t0001g0236 a0032c0052t0001g0020 a0033c0066t0001g0047 a0034c0043t0001g0008 a0036c0044t0001g0057 a0045c0049t0001g0084 a0046c0053t0001g0234 a0051c0050t0001g0079	43	426	0.1009	-15	c.195 others(32): Show c.1951-254_1951-240delTCAGTCTCTGTCAAG	CHTF18	ENSG00000127586.17	transcript	ENST00000262315.14	protein_coding	15/21		INFO_REALIGN_3_PRIME	chr16	TogoVar
CIAO2A_chr15_64067565_64098838	64090083	CTATAATC others(8): Show CTATAATCCTAGCACT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	336	0.0030	-15	c.125 others(32): Show c.125-1247_125-1233delAGTGCTAGGATTATA	CIAO2A	ENSG00000166797.11	transcript	ENST00000300030.8	protein_coding	1/4			chr15	TogoVar

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