Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNPY4_chr7_100114634_100130508	100121110	ATATATAT others(8): Show ATATATATTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA18747.hp1 HG02809.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0058 a0001c0001t0002g0058	2	416	0.0048	-15	c.119 others(32): Show c.119-1147_119-1133delATATATTTTTTTTTT	CNPY4	ENSG00000166997.8	transcript	ENST00000262932.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNPY4_chr7_100114634_100130508	100121114	ATATTTTT others(8): Show ATATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 NA18979.hp1 NA18991.hp2 HG00558.hp1 NA18979.hp1 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	3	416	0.0072	-15	c.119 others(32): Show c.119-1143_119-1129delATTTTTTTTTTTTTT	CNPY4	ENSG00000166997.8	transcript	ENST00000262932.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNPY4_chr7_100114634_100130508	100121116	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01099.hp1 HG01106.hp1 others(13): Show HG00438.hp2 HG01099.hp1 HG01106.hp1 HG01192.hp1 HG01346.hp2 HG01433.hp2 HG01496.hp1 HG01981.hp1 HG02602.hp2 HG03017.hp1 NA18952.hp2 NA18957.hp1 NA18978.hp2 NA18999.hp2 NA19010.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0035 others(4): Show a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0051 a0001c0001t0001g0072 a0001c0001t0001g0153 a0001c0001t0001g0154	16	416	0.0385	-15	c.119 others(32): Show c.119-1123_119-1109delTTTTTTTTTTTTTTT	CNPY4	ENSG00000166997.8	transcript	ENST00000262932.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNR1_chr6_88134864_88171347	88140079	CAGTACTT others(8): Show CAGTACTTGTATACAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0177 a0001c0001t0036g0177	1	398	0.0025	-15	c.37 others(26): Show c.3762_*3776delTTGTATACAAGTACT	CNR1	ENSG00000118432.13	transcript	ENST00000369501.3	protein_coding	2/2	3762		chr6	TogoVar
CNRIP1_chr2_68288010_68324949	68297567	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0184 a0001c0001t0001g0184	1	424	0.0024	-15	c.331 others(32): Show c.331-3556_331-3542delTTTTTTTTTTTTTTT	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246576445	TTTTGGTT others(8): Show TTTTGGTTTAATTGTG	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00408.hp1 others(134): Show HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00558.hp1 HG00558.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00735.hp2 HG00738.hp2 HG00741.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01109.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01257.hp1 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01433.hp1 HG01516.hp2 HG01884.hp1 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02015.hp2 HG02040.hp2 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02129.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02148.hp2 HG02257.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03471.hp1 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03540.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp2 HG06807.hp2 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18948.hp1 NA18950.hp1 NA18951.hp2 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18960.hp1 NA18962.hp2 NA18964.hp1 NA18966.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp1 NA18978.hp1 NA18979.hp1 NA18983.hp1 NA18985.hp1 NA18999.hp1 NA18999.hp2 NA19005.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19009.hp2 NA19011.hp1 NA19030.hp1 NA19070.hp2 NA19079.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp2 NA19240.hp1 NA20129.hp2 NA20300.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 others(3): Show a0001 a0002 a0004 a0007 a0008 a0010	a0001c0001 a0001c0012 a0002c0002 others(4): Show a0001c0001 a0001c0012 a0002c0002 a0004c0004 a0007c0011 a0008c0007 a0010c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0018 a0001c0001t0024 a0001c0001t0025 a0001c0012t0002 a0002c0002t0001 a0002c0002t0002 a0004c0004t0021 a0007c0011t0015 a0008c0007t0003 a0010c0010t0002	a0001c0001t0001g0156 a0001c0001t0001g0160 a0001c0001t0001g0194 others(134): Show a0001c0001t0001g0156 a0001c0001t0001g0160 a0001c0001t0001g0194 a0001c0001t0001g0198 a0001c0001t0001g0202 a0001c0001t0001g0207 a0001c0001t0001g0210 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0228 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0257 a0001c0001t0001g0260 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0283 a0001c0001t0001g0287 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0303 a0001c0001t0001g0304 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0314 a0001c0001t0001g0318 a0001c0001t0002g0005 a0001c0001t0002g0080 a0001c0001t0002g0107 a0001c0001t0002g0195 a0001c0001t0002g0201 a0001c0001t0002g0209 a0001c0001t0002g0214 a0001c0001t0002g0218 a0001c0001t0002g0223 a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0002g0231 a0001c0001t0002g0232 a0001c0001t0002g0233 a0001c0001t0002g0235 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0243 a0001c0001t0002g0244 a0001c0001t0002g0245 a0001c0001t0002g0247 a0001c0001t0002g0252 a0001c0001t0002g0258 a0001c0001t0002g0262 a0001c0001t0002g0276 a0001c0001t0002g0281 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0302 a0001c0001t0002g0310 a0001c0001t0002g0315 a0001c0001t0003g0084 a0001c0001t0003g0096 a0001c0001t0003g0199 a0001c0001t0003g0206 a0001c0001t0003g0211 a0001c0001t0003g0220 a0001c0001t0003g0222 a0001c0001t0003g0226 a0001c0001t0003g0227 a0001c0001t0003g0250 a0001c0001t0003g0259 a0001c0001t0003g0261 a0001c0001t0003g0270 a0001c0001t0003g0282 a0001c0001t0003g0292 a0001c0001t0003g0294 a0001c0001t0003g0297 a0001c0001t0003g0316 a0001c0001t0003g0317 a0001c0001t0004g0150 a0001c0001t0004g0153 a0001c0001t0004g0154 a0001c0001t0004g0157 a0001c0001t0004g0158 a0001c0001t0004g0159 a0001c0001t0004g0275 a0001c0001t0005g0155 a0001c0001t0005g0203 a0001c0001t0005g0204 a0001c0001t0005g0205 a0001c0001t0010g0229 a0001c0001t0010g0230 a0001c0001t0010g0286 a0001c0001t0011g0208 a0001c0001t0011g0212 a0001c0001t0011g0221 a0001c0001t0013g0196 a0001c0001t0018g0256 a0001c0001t0024g0269 a0001c0001t0025g0288 a0001c0012t0002g0278 a0002c0002t0001g0151 a0002c0002t0001g0268 a0002c0002t0002g0251 a0004c0004t0021g0152 a0007c0011t0015g0213 a0008c0007t0003g0267 a0010c0010t0002g0028	137	320	0.4281	-15	c.-52 others(32): Show c.-52+9785_-52+9799delTGGTTTAATTGTGTT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTD1_chr17_42793861_42816587	42801507	AAAAATAT others(8): Show AAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02886.hp2 HG03041.hp2 others(4): Show HG02572.hp1 HG02886.hp2 HG03041.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA19043.hp2	a0002 a0002	a0002c0002 a0002c0003 a0002c0002 a0002c0003	a0002c0002t0001 a0002c0003t0001 a0002c0002t0001 a0002c0003t0001	a0002c0002t0001g0021 a0002c0002t0001g0057 a0002c0003t0001g0020 others(3): Show a0002c0002t0001g0021 a0002c0002t0001g0057 a0002c0003t0001g0020 a0002c0003t0001g0021 a0002c0003t0001g0052 a0002c0003t0001g0054	7	306	0.0229	-15	c.170 others(32): Show c.170-2111_170-2097delAAATATATATATATA	CNTD1	ENSG00000176563.10	transcript	ENST00000588408.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTD1_chr17_42793861_42816587	42801509	AAATATAT others(8): Show AAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03579.hp2 HG02809.hp1 HG03579.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0056 a0002c0002t0001g0062 a0002c0002t0001g0056 a0002c0002t0001g0062	2	306	0.0065	-15	c.170 others(32): Show c.170-2109_170-2095delATATATATATATATA	CNTD1	ENSG00000176563.10	transcript	ENST00000588408.6	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr17	TogoVar
CNTFR_chr9_34546433_34594724	34546544	TCCAGCTG others(8): Show TCCAGCTGGAGGAGTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp2 NA19043.hp2 HG02559.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0001 a0001c0010t0001 a0001c0001t0001 a0001c0010t0001	a0001c0001t0001g0197 a0001c0010t0001g0061 a0001c0001t0001g0197 a0001c0010t0001g0061	2	402	0.0050	-15	c.55 others(26): Show c.5512_*5526delCACTCCTCCAGCTGG	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding		4888		chr9	TogoVar
CNTLN_chr9_17130040_17508923	17312349	ATATATAT others(8): Show ATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG01109.hp1 HG02109.hp1	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0002 a0013c0019t0002	a0013c0019t0002g0119 a0013c0019t0002g0120 a0013c0019t0002g0119 a0013c0019t0002g0120	2	218	0.0092	-15	c.134 others(34): Show c.1341+3113_1341+3127delTATATATATATATAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40690764	ATTTTATT others(8): Show ATTTTATTATTTTATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18980.hp1 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0076	1	230	0.0044	-15	c.-19 others(26): Show c.-1904_-1890delTTTTATTATTTTATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		1674		chr12	TogoVar
CNTN1_chr12_40687439_41077415	40690769	ATTATTTT others(8): Show ATTATTTTATTTTATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00621.hp1 HG00621.hp2 others(31): Show HG00140.hp2 HG00621.hp1 HG00621.hp2 HG01109.hp1 HG01981.hp1 HG02071.hp1 HG02083.hp1 HG02145.hp2 HG02257.hp2 HG02273.hp2 HG02615.hp1 HG03041.hp2 HG03098.hp2 HG03516.hp1 HG03704.hp2 HG03834.hp2 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18944.hp1 NA18950.hp2 NA18952.hp1 NA18953.hp2 NA18972.hp2 NA18977.hp2 NA18983.hp2 NA19006.hp1 NA19043.hp1 NA19043.hp2 NA19079.hp2 NA19090.hp2 NA19091.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0010 a0001c0003t0003 a0001c0003t0005 a0001c0004t0003 a0001c0005t0002 a0001c0005t0025 a0001c0006t0006	a0001c0001t0001g0007 a0001c0001t0001g0077 a0001c0001t0001g0101 others(31): Show a0001c0001t0001g0007 a0001c0001t0001g0077 a0001c0001t0001g0101 a0001c0001t0001g0160 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0087 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0220 a0001c0001t0003g0010 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0004g0093 a0001c0001t0004g0115 a0001c0002t0001g0099 a0001c0002t0001g0102 a0001c0002t0001g0157 a0001c0002t0001g0161 a0001c0002t0001g0164 a0001c0002t0001g0194 a0001c0002t0003g0075 a0001c0002t0004g0117 a0001c0002t0005g0098 a0001c0002t0010g0126 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0104 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0005t0002g0053 a0001c0005t0002g0062 a0001c0005t0025g0052 a0001c0006t0006g0018	34	230	0.1478	-15	c.-18 others(26): Show c.-1899_-1885delTTATTTTATTTTATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding		1669		chr12	TogoVar
CNTN1_chr12_40687439_41077415	40698228	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0082 a0001c0003t0005g0082	1	230	0.0044	-15	c.-77 others(32): Show c.-77+5650_-77+5664delTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40755190	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01070.hp2 HG01496.hp2 others(1): Show HG00280.hp1 HG01070.hp2 HG01496.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0005 a0001c0001t0001 a0001c0003t0005	a0001c0001t0001g0095 a0001c0001t0001g0177 a0001c0001t0001g0208 others(1): Show a0001c0001t0001g0095 a0001c0001t0001g0177 a0001c0001t0001g0208 a0001c0003t0005g0178	4	230	0.0174	-15	c.-77 others(34): Show c.-77+62620_-77+62634delAAAAAAAAAAAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40877988	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01167.hp1 HG01169.hp1 others(32): Show HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp2 HG01255.hp2 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02257.hp1 HG02486.hp1 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02717.hp2 HG02886.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03471.hp1 HG03471.hp2 NA18522.hp2 NA18906.hp1 NA18953.hp1 NA18964.hp2 NA18972.hp2 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0026 a0001c0002t0001 a0001c0003t0003 a0001c0003t0019	a0001c0001t0001g0007 a0001c0001t0001g0063 a0001c0001t0001g0118 others(32): Show a0001c0001t0001g0007 a0001c0001t0001g0063 a0001c0001t0001g0118 a0001c0001t0001g0188 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0002g0011 a0001c0001t0003g0010 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0007g0002 a0001c0001t0007g0055 a0001c0001t0013g0133 a0001c0001t0014g0074 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0026g0190 a0001c0002t0001g0001 a0001c0002t0001g0034 a0001c0002t0001g0169 a0001c0003t0003g0061 a0001c0003t0019g0056	35	230	0.1522	-15	c.-76 others(34): Show c.-76-30357_-76-30343delTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40977764	CTGTTTTG others(8): Show CTGTTTTGTTTTGTTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00280.hp2 others(72): Show HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp2 HG00438.hp1 HG00642.hp1 HG01070.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp1 HG01106.hp2 HG01123.hp1 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02055.hp1 HG02071.hp1 HG02280.hp1 HG02300.hp1 HG02559.hp1 HG02717.hp1 HG02818.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03209.hp2 HG03239.hp1 HG03704.hp1 HG03834.hp2 HG03927.hp1 HG04115.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18943.hp1 NA18944.hp2 NA18950.hp1 NA18953.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18959.hp2 NA18970.hp1 NA18974.hp2 NA18977.hp2 NA18983.hp2 NA18984.hp2 NA18988.hp1 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19062.hp1 NA19079.hp1 NA19090.hp1 NA20129.hp1 NA20129.hp2 NA21309.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0003c0008 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0002t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0019 a0001c0003t0020 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0007 a0003c0008t0002 a0005c0010t0002	a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 others(72): Show a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0101 a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0188 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0002g0220 a0001c0001t0003g0010 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0018g0048 a0001c0002t0001g0022 a0001c0002t0005g0098 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0019g0056 a0001c0003t0020g0165 a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0057 a0001c0004t0007g0213 a0001c0004t0007g0214 a0003c0008t0002g0143 a0005c0010t0002g0026	75	230	0.3261	-15	c.180 others(34): Show c.1805-3102_1805-3088delTTTTGTTTTGTTTTG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN3_chr3_74257568_74619659	74344397	GTTTTTTT others(8): Show GTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0009 a0009	a0009c0017 a0009c0017	a0009c0017t0001 a0009c0017t0001	a0009c0017t0001g0115 a0009c0017t0001g0115	1	174	0.0058	-15	c.136 others(34): Show c.1365-7754_1365-7740delAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74551754	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0067 a0001c0001t0003g0067	1	174	0.0058	-15	c.-80 others(34): Show c.-80-30577_-80-30563delAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74614433	TCGCCGCC others(8): Show TCGCCGCCGCCGCCGC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01884.hp2 HG02257.hp1 HG02615.hp1 others(3): Show HG01884.hp2 HG02257.hp1 HG02615.hp1 HG02622.hp1 HG02922.hp1 HG03209.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0026 a0001c0001 a0001c0002 a0003c0026	a0001c0001t0008 a0001c0002t0010 a0001c0002t0019 others(1): Show a0001c0001t0008 a0001c0002t0010 a0001c0002t0019 a0003c0026t0010	a0001c0001t0008g0001 a0001c0001t0008g0003 a0001c0001t0008g0006 others(3): Show a0001c0001t0008g0001 a0001c0001t0008g0003 a0001c0001t0008g0006 a0001c0002t0010g0004 a0001c0002t0019g0002 a0003c0026t0010g0005	6	174	0.0345	-15	c.-13 others(24): Show c.-138_-124delGCGGCGGCGGCGGCG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/23	93322		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287626	GAGAAGGA others(8): Show GAGAAGGAGAAGAAGA	G G	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0048 a0001c0004t0002g0048	1	116	0.0086	-15	c.-14 others(36): Show c.-144-51546_-144-51532delGAGAAGAAGAAGAAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287678	AGAAGAAG others(8): Show AGAAGAAGAAGAAGAG	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp1 HG02451.hp1 others(2): Show HG01884.hp1 HG01891.hp1 HG02451.hp1 HG03139.hp1 NA19043.hp2	a0001 a0003 a0009 a0001 a0003 a0009	a0001c0001 a0001c0002 a0001c0025 others(2): Show a0001c0001 a0001c0002 a0001c0025 a0003c0008 a0009c0027	a0001c0001t0002 a0001c0002t0001 a0001c0025t0001 others(2): Show a0001c0001t0002 a0001c0002t0001 a0001c0025t0001 a0003c0008t0013 a0009c0027t0001	a0001c0001t0002g0086 a0001c0002t0001g0029 a0001c0025t0001g0100 others(2): Show a0001c0001t0002g0086 a0001c0002t0001g0029 a0001c0025t0001g0100 a0003c0008t0013g0109 a0009c0027t0001g0007	5	116	0.0431	-15	c.-14 others(36): Show c.-144-51485_-144-51471delGGAAGAAGAAGAAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2527421	CTGCTGCT others(8): Show CTGCTGCTGCTGCTGT	C C	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0086 a0001c0001t0002g0086	1	116	0.0086	-15	c.-88 others(34): Show c.-88-43989_-88-43975delCTGCTGCTGTTGCTG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2983213	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp1 HG02965.hp2 others(1): Show HG01891.hp2 HG02451.hp1 HG02965.hp2 HG03516.hp1	a0001 a0009 a0001 a0009	a0001c0005 a0001c0006 a0009c0027 a0001c0005 a0001c0006 a0009c0027	a0001c0005t0001 a0001c0006t0003 a0009c0027t0001 a0001c0005t0001 a0001c0006t0003 a0009c0027t0001	a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0006t0003g0069 others(1): Show a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0006t0003g0069 a0009c0027t0001g0007	4	116	0.0345	-15	c.135 others(34): Show c.1359-5104_1359-5090delAAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99355811	GTTTTTTT others(8): Show GTTTTTTTTTGTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0018 a0005c0005t0018	a0005c0005t0018g0028 a0005c0005t0018g0028	1	66	0.0152	-15	c.-71 others(34): Show c.-71+30346_-71+30360delTTTTTTGTTTTTTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99380094	TGTGTGTG others(8): Show TGTGTGTGTGTGTATG	T T	intron_variant intron_variant	MODIFIER	HG06807.hp1 NA18957.hp2 NA20300.hp1 HG06807.hp1 NA18957.hp2 NA20300.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0006 a0001c0001 a0003c0003 a0006c0006	a0001c0001t0005 a0003c0003t0002 a0006c0006t0013 a0001c0001t0005 a0003c0003t0002 a0006c0006t0013	a0001c0001t0005g0048 a0003c0003t0002g0002 a0006c0006t0013g0025 a0001c0001t0005g0048 a0003c0003t0002g0002 a0006c0006t0013g0025	3	66	0.0455	-15	c.-71 others(34): Show c.-71+54623_-71+54637delATGGTGTGTGTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99432449	TCTTTTCT others(8): Show TCTTTTCTTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0043 a0001c0001t0009g0043	1	66	0.0152	-15	c.-71 others(36): Show c.-71+106980_-71+106994delCCTTTTCTTTTCTTT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523597	GATAGAAT others(8): Show GATAGAATAGAATAGA	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0034 a0003c0003t0007g0034	1	66	0.0152	-15	c.-70 others(34): Show c.-70-32506_-70-32492delTAGAATAGAATAGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523639	TAGAATAG others(8): Show TAGAATAGAATAGAAC	T T	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02723.hp2 HG03041.hp1 others(1): Show HG02004.hp2 HG02723.hp2 HG03041.hp1 NA20300.hp2	a0001 a0009 a0012 a0001 a0009 a0012	a0001c0001 a0009c0012 a0012c0013 a0001c0001 a0009c0012 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0009c0012t0008 others(1): Show a0001c0001t0001 a0001c0001t0004 a0009c0012t0008 a0012c0013t0008	a0001c0001t0001g0004 a0001c0001t0004g0044 a0009c0012t0008g0026 others(1): Show a0001c0001t0001g0004 a0001c0001t0004g0044 a0009c0012t0008g0026 a0012c0013t0008g0031	4	66	0.0606	-15	c.-70 others(34): Show c.-70-32501_-70-32487delTAGAATAGAACAGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523648	ATAGAACA others(8): Show ATAGAACAGAACAGAT	A A	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01496.hp2 HG01123.hp2 HG01496.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0012 a0003c0003t0002 a0001c0001t0012 a0003c0003t0002	a0001c0001t0012g0018 a0003c0003t0002g0012 a0001c0001t0012g0018 a0003c0003t0002g0012	2	66	0.0303	-15	c.-70 others(34): Show c.-70-32496_-70-32482delTAGAACAGAACAGAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24			chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523649	TAGAACAG others(8): Show TAGAACAGAACAGATC	T T	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02258.hp1 HG02886.hp2 others(3): Show HG01243.hp2 HG02258.hp1 HG02886.hp2 HG02895.hp1 NA18522.hp1 NA20300.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0010	a0001c0001 a0002c0002 a0004c0004 others(1): Show a0001c0001 a0002c0002 a0004c0004 a0010c0010	a0001c0001t0005 a0002c0002t0004 a0002c0002t0005 others(2): Show a0001c0001t0005 a0002c0002t0004 a0002c0002t0005 a0004c0004t0020 a0010c0010t0011	a0001c0001t0005g0014 a0001c0001t0005g0048 a0002c0002t0004g0007 others(3): Show a0001c0001t0005g0014 a0001c0001t0005g0048 a0002c0002t0004g0007 a0002c0002t0005g0015 a0004c0004t0020g0024 a0010c0010t0011g0009	6	66	0.0909	-15	c.-70 others(34): Show c.-70-32482_-70-32468delTCAGAACAGAACAGA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99523694	CAGAATAG others(8): Show CAGAATAGAACAGAAT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02602.hp2 NA18957.hp1 HG02257.hp2 HG02602.hp2 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0015 a0001c0001t0001 a0001c0001t0015	a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0015g0064 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0015g0064	3	66	0.0455	-15	c.-70 others(34): Show c.-70-32441_-70-32427delCAGAATAGAATAGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100291748	TAATAATA others(8): Show TAATAATAAATAAATA	T T	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0034 a0003c0003t0007g0034	1	66	0.0152	-15	c.231 others(34): Show c.2315-5871_2315-5857delTAAATAAATAAATAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	18/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1245265	ATATATAT others(8): Show ATATATATATACACAC	A A	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02165.hp1 HG03654.hp2 others(6): Show HG00609.hp1 HG02165.hp1 HG03654.hp2 HG03834.hp1 HG04204.hp2 NA18954.hp1 NA18979.hp2 NA19003.hp2 NA19043.hp2	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0003 a0002c0011 others(1): Show a0001c0001 a0001c0003 a0002c0011 a0007c0018	a0001c0001t0001 a0001c0003t0001 a0002c0011t0001 others(1): Show a0001c0001t0001 a0001c0003t0001 a0002c0011t0001 a0007c0018t0001	a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0082 others(6): Show a0001c0001t0001g0047 a0001c0001t0001g0054 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0171 a0001c0003t0001g0168 a0002c0011t0001g0217 a0007c0018t0001g0148	9	232	0.0388	-15	c.358 others(34): Show c.358+17273_358+17287delTATATATATACACAC	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTN6_chr3_1088024_1409217	1245269	ATATATAC others(8): Show ATATATACACACACAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0006 a0006	a0006c0027 a0006c0027	a0006c0027t0001 a0006c0027t0001	a0006c0027t0001g0191 a0006c0027t0001g0191	1	232	0.0043	-15	c.358 others(34): Show c.358+17277_358+17291delTATATACACACACAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	4/22			chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146370260	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 NA18522.hp1 HG02717.hp1 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0013 a0002c0017 a0001c0013 a0002c0017	a0001c0013t0003 a0002c0017t0015 a0001c0013t0003 a0002c0017t0015	a0001c0013t0003g0039 a0002c0017t0015g0037 a0001c0013t0003g0039 a0002c0017t0015g0037	2	40	0.0500	-15	c.97+ others(34): Show c.97+253302_97+253316delAAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146483283	ATATATAT others(8): Show ATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02897.hp1 HG02451.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0008 a0001c0002t0001g0007 a0001c0002t0001g0008	2	40	0.0500	-15	c.98- others(34): Show c.98-290987_98-290973delTATATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23			chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146486046	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02630.hp1 HG01891.hp1 HG02630.hp1	a0001 a0004 a0001 a0004	a0001c0012 a0004c0014 a0001c0012 a0004c0014	a0001c0012t0004 a0004c0014t0021 a0001c0012t0004 a0004c0014t0021	a0001c0012t0004g0026 a0004c0014t0021g0022 a0001c0012t0004g0026 a0004c0014t0021g0022	2	40	0.0500	-15	c.98- others(34): Show c.98-288203_98-288189delTTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146525573	TATCTCTC others(8): Show TATCTCTCTATCTATC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02976.hp1 HG02630.hp2 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0015 a0001c0002 a0001c0015	a0001c0002t0002 a0001c0015t0001 a0001c0002t0002 a0001c0015t0001	a0001c0002t0002g0013 a0001c0015t0001g0011 a0001c0002t0002g0013 a0001c0015t0001g0011	2	40	0.0500	-15	c.98- others(34): Show c.98-248693_98-248679delCTCTATCTATCATCT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146985308	ATTTTTTT others(8): Show ATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0013 a0001c0002t0002g0013	1	40	0.0250	-15	c.403 others(34): Show c.403-58584_403-58570delTTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147062127	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03098.hp2 HG01891.hp1 HG03098.hp2	a0001 a0004 a0001 a0004	a0001c0002 a0004c0014 a0001c0002 a0004c0014	a0001c0002t0001 a0004c0014t0021 a0001c0002t0001 a0004c0014t0021	a0001c0002t0001g0021 a0004c0014t0021g0022 a0001c0002t0001g0021 a0004c0014t0021g0022	2	40	0.0500	-15	c.550 others(34): Show c.550+18102_550+18116delAAAAAAAAAAAAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147216548	AACACTAA others(8): Show AACACTAAACTTATTT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp1 HG02451.hp2 others(22): Show HG00735.hp2 HG01891.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03225.hp2 HG03239.hp1 HG03540.hp1 HG03540.hp2 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0008 a0001c0012 a0001c0013 a0001c0015 a0001c0018 a0001c0019 a0002c0016 a0002c0017 a0003c0007 a0004c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(20): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0003t0004 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0003t0023 a0001c0004t0003 a0001c0004t0005 a0001c0008t0001 a0001c0012t0004 a0001c0013t0003 a0001c0015t0001 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015 a0003c0007t0017 a0004c0014t0021	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0007g0018 others(22): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0021 a0001c0002t0002g0013 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0003t0023g0030 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0004t0005g0004 a0001c0008t0001g0025 a0001c0012t0004g0026 a0001c0013t0003g0039 a0001c0015t0001g0011 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037 a0003c0007t0017g0031 a0004c0014t0021g0022	25	40	0.6250	-15	c.134 others(36): Show c.1349-83589_1349-83575delCTAAACTTATTTACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147237049	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp2 HG02896.hp1 others(3): Show HG02717.hp1 HG02717.hp2 HG02896.hp1 HG03139.hp1 HG03239.hp2 NA21309.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0002c0017 a0005c0020	a0001c0001t0018 a0001c0002t0002 a0001c0005t0008 others(3): Show a0001c0001t0018 a0001c0002t0002 a0001c0005t0008 a0001c0008t0001 a0002c0017t0015 a0005c0020t0005	a0001c0001t0018g0001 a0001c0002t0002g0040 a0001c0005t0008g0005 others(3): Show a0001c0001t0018g0001 a0001c0002t0002g0040 a0001c0005t0008g0005 a0001c0008t0001g0025 a0002c0017t0015g0037 a0005c0020t0005g0016	6	40	0.1500	-15	c.134 others(36): Show c.1349-63070_1349-63056delTTTTTTTTTTTTTTT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147462365	AACAAGAA others(8): Show AACAAGAATGTAAAGT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0009 a0001c0001t0006g0009	1	40	0.0250	-15	c.167 others(36): Show c.1671-23567_1671-23553delAAGAATGTAAAGTAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147741709	TAAAGCTA others(8): Show TAAAGCTACCCCCTCA	T T	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	40	0.0250	-15	c.209 others(38): Show c.2098+102407_2098+102421delGCTACCCCCTCAAAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147832543	CAATATAT others(8): Show CAATATATTATATTGA	C C	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0020 a0001c0001t0007g0020	1	40	0.0250	-15	c.209 others(36): Show c.2099-70998_2099-70984delATATTGAAATATATT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148380081	ACGTACTG others(8): Show ACGTACTGATTGCCAC	A A	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0003 a0001c0013t0003	a0001c0013t0003g0039 a0001c0013t0003g0039	1	40	0.0250	-15	c.347 others(34): Show c.3476-3567_3476-3553delCGTACTGATTGCCAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23			chr7	TogoVar
CNTNAP3B_chr9_41885536_42134426	41888506	CTAAAATA others(8): Show CTAAAATAAAATAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(57): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00323.hp2 HG00558.hp2 HG00642.hp1 HG00735.hp1 HG00735.hp2 HG01071.hp1 HG01081.hp1 HG01255.hp2 HG01516.hp1 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01952.hp1 HG01981.hp2 HG02056.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp2 HG02145.hp1 HG02273.hp1 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp2 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG03041.hp1 HG03041.hp2 HG03239.hp2 HG03453.hp1 HG03486.hp1 HG03486.hp2 HG03669.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp2 NA18949.hp1 NA18970.hp1 NA18974.hp2 NA18998.hp1 NA18998.hp2 NA19030.hp1 NA19030.hp2 NA19086.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0002 a0003 a0005 others(17): Show a0002 a0003 a0005 a0007 a0008 a0009 a0012 a0014 a0015 a0016 a0018 a0019 a0021 a0022 a0023 a0024 a0025 a0026 a0031 a0032	a0002c0002 a0002c0010 a0002c0015 others(23): Show a0002c0002 a0002c0010 a0002c0015 a0002c0020 a0002c0023 a0003c0003 a0003c0011 a0005c0005 a0007c0009 a0007c0016 a0008c0006 a0009c0008 a0012c0022 a0014c0018 a0015c0019 a0016c0017 a0018c0024 a0019c0031 a0021c0032 a0022c0030 a0023c0028 a0024c0029 a0025c0034 a0026c0025 a0031c0044 a0032c0039	a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 others(31): Show a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 a0002c0002t0024 a0002c0010t0001 a0002c0015t0001 a0002c0020t0001 a0002c0023t0001 a0003c0003t0004 a0003c0003t0008 a0003c0003t0021 a0003c0003t0029 a0003c0011t0004 a0005c0005t0006 a0005c0005t0030 a0007c0009t0023 a0007c0009t0025 a0007c0016t0001 a0008c0006t0010 a0009c0008t0009 a0012c0022t0001 a0014c0018t0001 a0015c0019t0001 a0016c0017t0001 a0018c0024t0008 a0019c0031t0028 a0021c0032t0004 a0022c0030t0006 a0023c0028t0006 a0024c0029t0006 a0025c0034t0004 a0026c0025t0019 a0031c0044t0009 a0032c0039t0014	a0002c0002t0001g0040 a0002c0002t0001g0041 a0002c0002t0001g0044 others(57): Show a0002c0002t0001g0040 a0002c0002t0001g0041 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0047 a0002c0002t0001g0048 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0052 a0002c0002t0001g0053 a0002c0002t0001g0056 a0002c0002t0001g0059 a0002c0002t0001g0062 a0002c0002t0001g0063 a0002c0002t0001g0065 a0002c0002t0012g0043 a0002c0002t0012g0051 a0002c0002t0022g0068 a0002c0002t0024g0061 a0002c0010t0001g0057 a0002c0010t0001g0058 a0002c0015t0001g0046 a0002c0020t0001g0060 a0002c0023t0001g0054 a0003c0003t0004g0075 a0003c0003t0004g0081 a0003c0003t0004g0082 a0003c0003t0008g0077 a0003c0003t0008g0083 a0003c0003t0008g0086 a0003c0003t0021g0035 a0003c0003t0029g0072 a0003c0011t0004g0074 a0003c0011t0004g0078 a0005c0005t0006g0073 a0005c0005t0006g0076 a0005c0005t0006g0091 a0005c0005t0030g0092 a0007c0009t0023g0039 a0007c0009t0025g0037 a0007c0016t0001g0036 a0008c0006t0010g0069 a0008c0006t0010g0070 a0008c0006t0010g0071 a0009c0008t0009g0105 a0009c0008t0009g0106 a0012c0022t0001g0055 a0014c0018t0001g0067 a0015c0019t0001g0066 a0016c0017t0001g0042 a0018c0024t0008g0080 a0019c0031t0028g0088 a0021c0032t0004g0079 a0022c0030t0006g0085 a0023c0028t0006g0084 a0024c0029t0006g0087 a0025c0034t0004g0090 a0026c0025t0019g0028 a0031c0044t0009g0094 a0032c0039t0014g0025	60	108	0.5556	-15	c.54 others(26): Show c.5468_*5482delTTTTATTTTATTTTA	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding		2029		chr9	TogoVar
CNTNAP3_chr9_39059710_39293167	39204967	AATCATCA others(8): Show AATCATCATCATCATC	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	4	0.2500	-15	c.391 others(34): Show c.391-11707_391-11693delGATGATGATGATGAT	CNTNAP3	ENSG00000106714.18	transcript	ENST00000297668.11	protein_coding	3/23			chr9	TogoVar
CNTNAP3_chr9_39059710_39293167	39213186	GAGAGGAG others(8): Show GAGAGGAGAGAAGAGA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	4	0.2500	-15	c.391 others(34): Show c.391-19926_391-19912delTCTCTTCTCTCCTCT	CNTNAP3	ENSG00000106714.18	transcript	ENST00000297668.11	protein_coding	3/23			chr9	TogoVar
CNTNAP4_chr16_76272401_76565757	76418148	TGTCATTA others(8): Show TGTCATTAATATTGAA	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03516.hp1 HG02486.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0046 a0001c0001t0005g0202 a0001c0001t0005g0046 a0001c0001t0005g0202	2	274	0.0073	-15	c.391 others(32): Show c.391-9303_391-9289delGTCATTAATATTGAA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23			chr16	TogoVar

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