Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
FOXN3_chr14_89151177_89422233	89360873	ACCTCCAC others(8): Show ACCTCCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0146 a0001c0001t0001g0146	1	230	0.0044	-15	c.544 others(34): Show c.544-10080_544-10066delAGGTGGTGGTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360876	TCCACCAC others(8): Show TCCACCACCACCTCCA	T T	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0102 a0001c0001t0006g0102	1	230	0.0044	-15	c.544 others(34): Show c.544-10083_544-10069delTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360922	GCACCACC others(8): Show GCACCACCTCCACCAC	G G	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0202 a0001c0001t0028g0202	1	230	0.0044	-15	c.544 others(34): Show c.544-10129_544-10115delGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360949	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG03225.hp1 HG00741.hp2 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0029 a0001c0001t0002 a0001c0001t0029	a0001c0001t0002g0175 a0001c0001t0029g0058 a0001c0001t0002g0175 a0001c0001t0029g0058	2	230	0.0087	-15	c.544 others(34): Show c.544-10156_544-10142delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360957	ACCTCCAG others(8): Show ACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03492.hp1 HG02809.hp1 HG03492.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0083 a0001c0001t0001 a0001c0003t0083	a0001c0001t0001g0225 a0001c0003t0083g0215 a0001c0001t0001g0225 a0001c0003t0083g0215	2	230	0.0087	-15	c.544 others(34): Show c.544-10164_544-10150delAGGTGGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360976	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0079 a0001c0001t0009g0079	1	230	0.0044	-15	c.544 others(34): Show c.544-10183_544-10169delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361011	TCCACCAC others(8): Show TCCACCACCACCTCCA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0089 a0001c0001t0089	a0001c0001t0089g0170 a0001c0001t0089g0170	1	230	0.0044	-15	c.544 others(34): Show c.544-10218_544-10204delTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361043	CACCACCT others(8): Show CACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0037 a0001c0004t0037	a0001c0004t0037g0013 a0001c0004t0037g0013	1	230	0.0044	-15	c.544 others(34): Show c.544-10250_544-10236delAGTGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361054	GCACTACC others(8): Show GCACTACCTCCAGCAC	G G	intron_variant intron_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0052 a0001c0003t0001g0052	1	230	0.0044	-15	c.544 others(34): Show c.544-10261_544-10247delGTGCTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361062	TCCAGCAC others(8): Show TCCAGCACCACCTCCA	T T	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0104 a0001c0001t0002g0104	1	230	0.0044	-15	c.544 others(34): Show c.544-10269_544-10255delTGGAGGTGGTGCTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361156	CCAGCACT others(8): Show CCAGCACTACCTCCAG	C C	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0066 a0001c0001t0004g0066	1	230	0.0044	-15	c.544 others(34): Show c.544-10363_544-10349delCTGGAGGTAGTGCTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361245	TCCAGCAC others(8): Show TCCAGCACCACCTCCA	T T	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0090 a0001c0001t0090	a0001c0001t0090g0155 a0001c0001t0090g0155	1	230	0.0044	-15	c.544 others(34): Show c.544-10452_544-10438delTGGAGGTGGTGCTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361279	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0179 a0001c0001t0002g0179	1	230	0.0044	-15	c.544 others(34): Show c.544-10486_544-10472delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361287	ACCTCCAG others(8): Show ACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG04228.hp2 NA18995.hp2 HG01192.hp1 HG04228.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0094 a0001c0001t0001 a0001c0001t0007 a0001c0001t0094	a0001c0001t0001g0049 a0001c0001t0007g0061 a0001c0001t0094g0034 a0001c0001t0001g0049 a0001c0001t0007g0061 a0001c0001t0094g0034	3	230	0.0130	-15	c.544 others(34): Show c.544-10494_544-10480delAGGTGGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361306	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01243.hp2 HG02273.hp1 others(3): Show HG01175.hp1 HG01243.hp2 HG02273.hp1 NA18985.hp1 NA19065.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0012 a0001c0001t0020 others(3): Show a0001c0001t0007 a0001c0001t0012 a0001c0001t0020 a0001c0001t0025 a0001c0001t0039 a0001c0001t0093	a0001c0001t0007g0060 a0001c0001t0012g0145 a0001c0001t0020g0003 others(3): Show a0001c0001t0007g0060 a0001c0001t0012g0145 a0001c0001t0020g0003 a0001c0001t0025g0093 a0001c0001t0039g0223 a0001c0001t0093g0115	6	230	0.0261	-15	c.544 others(34): Show c.544-10513_544-10499delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361384	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	NA18985.hp1 NA19065.hp2 NA18985.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0007 a0001c0003t0001 a0001c0001t0007 a0001c0003t0001	a0001c0001t0007g0060 a0001c0003t0001g0137 a0001c0001t0007g0060 a0001c0003t0001g0137	2	230	0.0087	-15	c.544 others(34): Show c.544-10591_544-10577delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361513	ACCTCCAC others(8): Show ACCTCCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0086 a0001c0001t0086	a0001c0001t0086g0130 a0001c0001t0086g0130	1	230	0.0044	-15	c.544 others(34): Show c.544-10720_544-10706delAGGTGGTGGTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361516	TCCACCAC others(8): Show TCCACCACCACCTCCA	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	230	0.0044	-15	c.544 others(34): Show c.544-10723_544-10709delTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361583	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0104 a0001c0001t0002g0104	1	230	0.0044	-15	c.544 others(34): Show c.544-10790_544-10776delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361598	GCACTACC others(8): Show GCACTACCTCCACCAC	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0168 a0001c0001t0023g0168	1	230	0.0044	-15	c.544 others(34): Show c.544-10805_544-10791delGTGGTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361708	ACCTCCAG others(8): Show ACCTCCAGCACTACCT	A A	intron_variant intron_variant	MODIFIER	HG01993.hp1 NA18960.hp2 NA18965.hp2 HG01993.hp1 NA18960.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0005 a0001c0001t0022 a0001c0003t0001 a0001c0001t0005 a0001c0001t0022 a0001c0003t0001	a0001c0001t0005g0128 a0001c0001t0022g0017 a0001c0003t0001g0054 a0001c0001t0005g0128 a0001c0001t0022g0017 a0001c0003t0001g0054	3	230	0.0130	-15	c.544 others(34): Show c.544-10915_544-10901delAGGTAGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361766	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0033 a0001c0001t0013g0033	1	230	0.0044	-15	c.544 others(34): Show c.544-10973_544-10959delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361824	CACCACCT others(8): Show CACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0004 a0001c0001t0019g0004	1	230	0.0044	-15	c.544 others(34): Show c.544-11031_544-11017delAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361835	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0091 a0001c0001t0018g0091	1	230	0.0044	-15	c.544 others(34): Show c.544-11042_544-11028delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361843	ACCTCCAG others(8): Show ACCTCCAGCACTACCT	A A	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18946.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0210 a0001c0001t0010g0210	1	230	0.0044	-15	c.544 others(34): Show c.544-11050_544-11036delAGGTAGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361901	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02809.hp2 HG00597.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0072 a0001c0001t0030 a0001c0001t0072	a0001c0001t0030g0007 a0001c0001t0072g0226 a0001c0001t0030g0007 a0001c0001t0072g0226	2	230	0.0087	-15	c.544 others(34): Show c.544-11108_544-11094delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361905	TACCACCT others(8): Show TACCACCTCCAGCACC	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01175.hp1 HG01243.hp2 others(9): Show HG01106.hp2 HG01175.hp1 HG01243.hp2 HG02056.hp1 HG02622.hp2 HG02738.hp2 NA18942.hp1 NA18945.hp1 NA18964.hp2 NA18995.hp1 NA19007.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(7): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0014 a0001c0001t0020 a0001c0001t0025 a0001c0001t0036 a0001c0001t0047	a0001c0001t0001g0120 a0001c0001t0001g0124 a0001c0001t0001g0227 others(9): Show a0001c0001t0001g0120 a0001c0001t0001g0124 a0001c0001t0001g0227 a0001c0001t0006g0094 a0001c0001t0007g0014 a0001c0001t0009g0021 a0001c0001t0012g0145 a0001c0001t0014g0173 a0001c0001t0020g0003 a0001c0001t0025g0228 a0001c0001t0036g0011 a0001c0001t0047g0116	12	230	0.0522	-15	c.544 others(34): Show c.544-11112_544-11098delGGTGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361943	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0091 a0001c0001t0018g0091	1	230	0.0044	-15	c.544 others(34): Show c.544-11150_544-11136delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362021	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03669.hp1 HG03669.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0102 a0001c0001t0006g0102	1	230	0.0044	-15	c.544 others(34): Show c.544-11228_544-11214delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362063	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01255.hp2 HG02109.hp2 others(2): Show HG01123.hp1 HG01255.hp2 HG02109.hp2 HG03688.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0012 a0001c0001t0064 others(1): Show a0001c0001t0005 a0001c0001t0012 a0001c0001t0064 a0001c0001t0068	a0001c0001t0005g0096 a0001c0001t0005g0097 a0001c0001t0012g0107 others(2): Show a0001c0001t0005g0096 a0001c0001t0005g0097 a0001c0001t0012g0107 a0001c0001t0064g0160 a0001c0001t0068g0169	5	230	0.0217	-15	c.544 others(34): Show c.544-11270_544-11256delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362079	CACCACCT others(8): Show CACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0058 a0001c0001t0058	a0001c0001t0058g0082 a0001c0001t0058g0082	1	230	0.0044	-15	c.544 others(34): Show c.544-11286_544-11272delAGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362090	CCACTACC others(8): Show CCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0153 a0001c0001t0002g0153	1	230	0.0044	-15	c.544 others(34): Show c.544-11297_544-11283delCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362137	ACCTCCAG others(8): Show ACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0074 a0001c0001t0004g0074	1	230	0.0044	-15	c.544 others(34): Show c.544-11344_544-11330delAGGTGGTGCTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362144	GCACCACC others(8): Show GCACCACCTCCACCAC	G G	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0058 a0001c0001t0058	a0001c0001t0058g0082 a0001c0001t0058g0082	1	230	0.0044	-15	c.544 others(34): Show c.544-11351_544-11337delGTGGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362257	ACCACCAC others(8): Show ACCACCACCTCCTCCT	A A	intron_variant intron_variant	MODIFIER	HG03704.hp1 NA18945.hp1 HG03704.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0012 a0001c0001t0006 a0001c0001t0012	a0001c0001t0006g0094 a0001c0001t0012g0147 a0001c0001t0006g0094 a0001c0001t0012g0147	2	230	0.0087	-15	c.544 others(34): Show c.544-11464_544-11450delAGGAGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362272	TCCTCCAC others(8): Show TCCTCCACCACCACCA	T T	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0180 a0001c0001t0011g0181 a0001c0001t0011g0180 a0001c0001t0011g0181	2	230	0.0087	-15	c.544 others(34): Show c.544-11479_544-11465delTGGTGGTGGTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362300	CCACCACC others(8): Show CCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02055.hp1 HG03516.hp1 HG01109.hp1 HG02055.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0032 a0001c0001t0071 a0001c0001t0020 a0001c0001t0032 a0001c0001t0071	a0001c0001t0020g0005 a0001c0001t0032g0006 a0001c0001t0071g0186 a0001c0001t0020g0005 a0001c0001t0032g0006 a0001c0001t0071g0186	3	230	0.0130	-15	c.544 others(34): Show c.544-11507_544-11493delCTGGAGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362310	CTCCAGCA others(8): Show CTCCAGCACCACCTCT	C C	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0159 a0001c0001t0052g0159	1	230	0.0044	-15	c.544 others(34): Show c.544-11517_544-11503delAGAGGTGGTGCTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362350	ACCACCTC others(8): Show ACCACCTCCTCCTCCT	A A	intron_variant intron_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0027 a0001c0001t0008g0027	1	230	0.0044	-15	c.544 others(34): Show c.544-11557_544-11543delAGGAGGAGGAGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362671	TCCACCAC others(8): Show TCCACCACCATCTCCA	T T	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0156 a0001c0001t0041g0156	1	230	0.0044	-15	c.544 others(34): Show c.544-11878_544-11864delTGGAGATGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362683	TCCACCAC others(8): Show TCCACCACCACCACCA	T T	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02055.hp2 HG03225.hp1 others(1): Show HG01978.hp2 HG02055.hp2 HG03225.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0014 a0001c0001t0002 a0001c0001t0005 a0001c0001t0014	a0001c0001t0002g0175 a0001c0001t0005g0108 a0001c0001t0014g0185 others(1): Show a0001c0001t0002g0175 a0001c0001t0005g0108 a0001c0001t0014g0185 a0001c0001t0014g0189	4	230	0.0174	-15	c.544 others(34): Show c.544-11890_544-11876delTGGTGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89374263	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02056.hp1 NA18942.hp1 NA18942.hp2 others(1): Show HG02056.hp1 NA18942.hp1 NA18942.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0009 a0001c0001t0036 others(1): Show a0001c0001t0004 a0001c0001t0009 a0001c0001t0036 a0001c0001t0047	a0001c0001t0004g0074 a0001c0001t0009g0021 a0001c0001t0036g0011 others(1): Show a0001c0001t0004g0074 a0001c0001t0009g0021 a0001c0001t0036g0011 a0001c0001t0047g0116	4	230	0.0174	-15	c.544 others(34): Show c.544-23470_544-23456delTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN3_chr14_89151177_89422233	89377020	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00544.hp2 HG00597.hp1 others(58): Show HG00423.hp2 HG00544.hp2 HG00597.hp1 HG00609.hp1 HG00673.hp2 HG00741.hp1 HG00741.hp2 HG01106.hp1 HG01109.hp2 HG01123.hp2 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01346.hp2 HG01884.hp1 HG01934.hp2 HG01975.hp1 HG01993.hp2 HG02040.hp2 HG02056.hp2 HG02155.hp1 HG02155.hp2 HG02257.hp1 HG02300.hp2 HG02451.hp2 HG02683.hp2 HG02738.hp1 HG02922.hp2 HG03239.hp1 HG03471.hp2 HG03654.hp2 HG03669.hp2 HG03688.hp1 HG03834.hp1 HG03834.hp2 HG04228.hp2 NA18522.hp1 NA18612.hp1 NA18612.hp2 NA18945.hp2 NA18946.hp1 NA18960.hp2 NA18964.hp1 NA18965.hp2 NA18967.hp1 NA18968.hp1 NA18971.hp1 NA18971.hp2 NA18980.hp1 NA18983.hp2 NA18985.hp1 NA18995.hp2 NA18997.hp1 NA18998.hp2 NA18999.hp2 NA19007.hp2 NA19060.hp1 NA19078.hp1 NA19078.hp2 NA20300.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(34): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0026 a0001c0001t0029 a0001c0001t0034 a0001c0001t0048 a0001c0001t0055 a0001c0001t0057 a0001c0001t0059 a0001c0001t0067 a0001c0001t0069 a0001c0001t0070 a0001c0001t0075 a0001c0001t0078 a0001c0001t0079 a0001c0001t0082 a0001c0001t0084 a0001c0001t0086 a0001c0001t0089 a0001c0001t0092 a0001c0001t0094 a0001c0001t0095 a0001c0003t0001	a0001c0001t0001g0020 a0001c0001t0001g0026 a0001c0001t0001g0035 others(58): Show a0001c0001t0001g0020 a0001c0001t0001g0026 a0001c0001t0001g0035 a0001c0001t0001g0039 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0081 a0001c0001t0002g0044 a0001c0001t0003g0029 a0001c0001t0003g0069 a0001c0001t0003g0192 a0001c0001t0005g0059 a0001c0001t0006g0071 a0001c0001t0006g0193 a0001c0001t0007g0060 a0001c0001t0007g0061 a0001c0001t0007g0080 a0001c0001t0008g0022 a0001c0001t0008g0027 a0001c0001t0008g0032 a0001c0001t0008g0041 a0001c0001t0008g0050 a0001c0001t0009g0019 a0001c0001t0010g0040 a0001c0001t0010g0056 a0001c0001t0013g0033 a0001c0001t0013g0057 a0001c0001t0014g0062 a0001c0001t0015g0206 a0001c0001t0017g0037 a0001c0001t0017g0075 a0001c0001t0019g0001 a0001c0001t0021g0025 a0001c0001t0021g0042 a0001c0001t0022g0017 a0001c0001t0022g0043 a0001c0001t0026g0031 a0001c0001t0029g0048 a0001c0001t0029g0058 a0001c0001t0034g0010 a0001c0001t0048g0038 a0001c0001t0055g0028 a0001c0001t0057g0018 a0001c0001t0059g0055 a0001c0001t0067g0063 a0001c0001t0069g0122 a0001c0001t0070g0070 a0001c0001t0075g0051 a0001c0001t0078g0067 a0001c0001t0079g0047 a0001c0001t0082g0065 a0001c0001t0084g0073 a0001c0001t0086g0130 a0001c0001t0089g0170 a0001c0001t0092g0024 a0001c0001t0094g0034 a0001c0001t0095g0023 a0001c0003t0001g0052 a0001c0003t0001g0054	61	230	0.2652	-15	c.544 others(34): Show c.544-26227_544-26213delTTTTTTTTTTTTTTT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5		chr14	TogoVar
FOXN4_chr12_109272978_109314284	109304221	GAGAAAGA others(8): Show GAGAAAGAAAGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0153 a0001c0001t0001g0153	1	368	0.0027	-15	c.86+ others(30): Show c.86+4000_86+4014delTCTTTCTTTCTTTCT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	2/9		chr12	TogoVar
FOXO1_chr13_40550667_40671641	40584469	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0375 a0001c0001t0028g0375	1	394	0.0025	-15	c.631 others(34): Show c.631-23624_631-23610delTTTTTTTTTTTTTTT	FOXO1	ENSG00000150907.10	transcript	ENST00000379561.6	protein_coding	1/2		chr13	TogoVar
FOXO1_chr13_40550667_40671641	40660948	AAACAACA others(8): Show AAACAACAACAACAAC	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 NA19240.hp1 HG02451.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0028 a0001c0001t0001 a0001c0001t0028	a0001c0001t0001g0161 a0001c0001t0028g0375 a0001c0001t0001g0161 a0001c0001t0028g0375	2	394	0.0051	-15	c.630 others(32): Show c.630+4620_630+4634delGTTGTTGTTGTTGTT	FOXO1	ENSG00000150907.10	transcript	ENST00000379561.6	protein_coding	1/2		chr13	TogoVar
FOXO3_chr6_108555917_108689774	108586936	ATATTATT others(8): Show ATATTATTATTATTAT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02896.hp2 HG02897.hp1 others(4): Show HG02257.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp1 HG03041.hp2 HG03130.hp2 NA18970.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0004 a0001c0001t0020 a0001c0003t0003 a0001c0001t0004 a0001c0001t0020 a0001c0003t0003	a0001c0001t0004g0001 a0001c0001t0004g0002 a0001c0001t0004g0004 others(4): Show a0001c0001t0004g0001 a0001c0001t0004g0002 a0001c0001t0004g0004 a0001c0001t0004g0007 a0001c0001t0020g0018 a0001c0001t0020g0019 a0001c0003t0003g0225	7	278	0.0252	-15	c.621 others(34): Show c.621+25145_621+25159delATTATTATTATTATT	FOXO3	ENSG00000118689.15	transcript	ENST00000406360.2	protein_coding	1/2	INFO_REALIGN_3_PRIME	chr6	TogoVar
FOXP1_chr3_70949708_71588728	71057291	CTTTTTTT others(8): Show CTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03540.hp2 HG02717.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0031 a0001c0001t0028 a0001c0001t0031	a0001c0001t0028g0049 a0001c0001t0031g0079 a0001c0001t0028g0049 a0001c0001t0031g0079	2	96	0.0208	-15	c.283 others(32): Show c.283-3533_283-3519delAAAAAAAAAAAAAAA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20		chr3	TogoVar
FOXP1_chr3_70949708_71588728	71176743	CAAAAAAA others(8): Show CAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp2 HG01884.hp2 others(22): Show HG00639.hp1 HG00735.hp2 HG01884.hp2 HG01952.hp1 HG02055.hp2 HG02145.hp1 HG02258.hp1 HG02572.hp2 HG02818.hp1 HG02818.hp2 HG02897.hp1 HG02976.hp1 HG03041.hp1 HG03098.hp2 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03704.hp2 HG04199.hp1 NA18522.hp1 NA18522.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 others(20): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0001t0020 a0001c0001t0022 a0001c0001t0030 a0001c0001t0035 a0001c0001t0038 a0001c0001t0042 a0001c0001t0044 a0001c0001t0045 a0001c0001t0046 a0001c0001t0050 a0001c0001t0056 a0001c0001t0067 a0001c0001t0069 a0001c0001t0074 a0001c0001t0075 a0001c0001t0078 a0001c0001t0079 a0001c0001t0081	a0001c0001t0001g0021 a0001c0001t0001g0038 a0001c0001t0001g0044 others(22): Show a0001c0001t0001g0021 a0001c0001t0001g0038 a0001c0001t0001g0044 a0001c0001t0005g0022 a0001c0001t0010g0073 a0001c0001t0014g0066 a0001c0001t0015g0050 a0001c0001t0020g0010 a0001c0001t0022g0047 a0001c0001t0030g0002 a0001c0001t0035g0082 a0001c0001t0038g0013 a0001c0001t0042g0059 a0001c0001t0044g0078 a0001c0001t0045g0043 a0001c0001t0046g0017 a0001c0001t0050g0095 a0001c0001t0056g0093 a0001c0001t0067g0006 a0001c0001t0069g0027 a0001c0001t0074g0069 a0001c0001t0075g0030 a0001c0001t0078g0028 a0001c0001t0079g0014 a0001c0001t0081g0018	25	96	0.2604	-15	c.180 others(34): Show c.180+21444_180+21458delTTTTTTTTTTTTTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20		chr3	TogoVar
FOXP1_chr3_70949708_71588728	71549860	TAAAAAAA others(8): Show TAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02723.hp1 HG03130.hp1 others(1): Show HG02717.hp2 HG02723.hp1 HG03130.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0013 a0001c0001t0025 others(1): Show a0001c0001t0006 a0001c0001t0013 a0001c0001t0025 a0001c0001t0037	a0001c0001t0006g0092 a0001c0001t0013g0012 a0001c0001t0025g0015 others(1): Show a0001c0001t0006g0092 a0001c0001t0013g0012 a0001c0001t0025g0015 a0001c0001t0037g0011	4	96	0.0417	-15	c.-29 others(36): Show c.-298+31674_-298+31688delTTTTTTTTTTTTTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	2/20		chr3	TogoVar

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