Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CTCF_chr16_67557526_67644177	67629746	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0134 a0001c0001t0002g0134	1	168	0.0060	-16	c.183 others(33): Show c.1837+244_1837+259delTTTTTTTTTTTTTTTT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTDP1_chr18_79674803_79759503	79701529	TTAAATAA others(9): Show TTAAATAAATAAATAAA	T T	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0011 a0011	a0011c0032 a0011c0032	a0011c0032t0001 a0011c0032t0001	a0011c0032t0001g0083 a0011c0032t0001g0083	1	378	0.0027	-16	c.622 others(33): Show c.622-3209_622-3194delTAAATAAATAAATAAA	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79748851	GTCTGTGT others(9): Show GTCTGTGTGTGAGCCGT	G G	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0238 a0002c0006t0001g0238	1	378	0.0027	-16	c.274 others(35): Show c.2748-4791_2748-4776delGAGCCGTTCTGTGTGT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDSP2_chr12_57814927_57851729	57818182	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp1 HG02615.hp2 HG02622.hp1 others(6): Show HG02109.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02895.hp1 HG03139.hp2 HG03209.hp1 NA19043.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0027 a0001c0001t0001 a0001c0001t0027	a0001c0001t0001g0009 a0001c0001t0001g0059 a0001c0001t0001g0087 others(2): Show a0001c0001t0001g0009 a0001c0001t0001g0059 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0027g0086	9	346	0.0260	-16	c.54 others(27): Show c.5404_*5419delAAAAAAAAAAAAAAAA	CTDSP2	ENSG00000175215.11	transcript	ENST00000398073.7	protein_coding		1744		chr12	TogoVar
CTDSPL2_chr15_44422629_44534038	44523388	CTACATAC others(9): Show CTACATACATACATACA	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01071.hp1 HG00738.hp2 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0188 a0001c0001t0016g0189 a0001c0001t0016g0188 a0001c0001t0016g0189	2	234	0.0086	-16	c.133 others(33): Show c.1336-678_1336-663delCATACATACATACATA	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTDSPL_chr3_37856880_37989469	37861845	TCTCCCGC others(9): Show TCTCCCGCCCTCCCGCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0161 a0001c0001t0003g0161	1	166	0.0060	-16	c.-35 others(25): Show c.-354_-339delCTCCCGCCCTCCCGCC	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding		34		chr3	TogoVar
CTDSPL_chr3_37856880_37989469	37960497	AAAAAAAA others(9): Show AAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02896.hp1 HG02895.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0001 a0001c0001t0003g0001	2	166	0.0121	-16	c.267 others(33): Show c.267+3356_267+3371delAAAAAAAATATATATA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CTIF_chr18_48534031_48868217	48602834	GATGGATG others(9): Show GATGGATGGATGGATGA	G G	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG03098.hp2 HG03209.hp1 HG02615.hp2 HG03098.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0044 a0001c0002t0042 a0001c0001t0003 a0001c0001t0044 a0001c0002t0042	a0001c0001t0003g0118 a0001c0001t0044g0144 a0001c0002t0042g0050 a0001c0001t0003g0118 a0001c0001t0044g0144 a0001c0002t0042g0050	3	144	0.0208	-16	c.-28 others(35): Show c.-28-16688_-28-16673delAATGGATGGATGGATG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48751944	TATTCATT others(9): Show TATTCATTCATTCATTC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG03486.hp1 HG03540.hp1 HG02109.hp1 HG03486.hp1 HG03540.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0007 a0001c0001 a0003c0007	a0001c0001t0003 a0001c0001t0015 a0003c0007t0013 a0001c0001t0003 a0001c0001t0015 a0003c0007t0013	a0001c0001t0003g0013 a0001c0001t0015g0083 a0003c0007t0013g0027 a0001c0001t0003g0013 a0001c0001t0015g0083 a0003c0007t0013g0027	3	144	0.0208	-16	c.585 others(33): Show c.585-5950_585-5935delATTCATTCATTCATTC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48846492	AGGATAGA others(9): Show AGGATAGATGGATGGAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02257.hp2 HG02970.hp1 others(2): Show HG02109.hp2 HG02257.hp2 HG02970.hp1 HG03195.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0023 a0001c0001t0051 a0001c0001t0052 others(1): Show a0001c0001t0023 a0001c0001t0051 a0001c0001t0052 a0001c0009t0041	a0001c0001t0023g0048 a0001c0001t0023g0051 a0001c0001t0051g0005 others(2): Show a0001c0001t0023g0048 a0001c0001t0023g0051 a0001c0001t0051g0005 a0001c0001t0052g0126 a0001c0009t0041g0131	5	144	0.0347	-16	c.152 others(37): Show c.1528-11091_1528-11076delAGATGGATGGATGGAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48861450	AGGAGGCC others(9): Show AGGAGGCCTCGAGGGAG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG02896.hp1 HG03209.hp2 others(2): Show HG00639.hp1 HG02896.hp1 HG03209.hp2 NA19030.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0017 a0001c0001t0025 a0001c0001t0039 others(1): Show a0001c0001t0017 a0001c0001t0025 a0001c0001t0039 a0001c0002t0025	a0001c0001t0017g0100 a0001c0001t0017g0112 a0001c0001t0025g0011 others(2): Show a0001c0001t0017g0100 a0001c0001t0017g0112 a0001c0001t0025g0011 a0001c0001t0039g0043 a0001c0002t0025g0130	5	144	0.0347	-16	c.18 others(27): Show c.1893_*1908delGAGGCCTCGAGGGAGG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	12/12	1893	INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48864037	ATTTTTTT others(9): Show ATTTTTTTTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG02258.hp1 HG03195.hp2 others(4): Show HG01884.hp1 HG02258.hp1 HG03195.hp2 HG06807.hp2 NA19240.hp1 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0022 a0001c0001t0038 others(1): Show a0001c0001t0004 a0001c0001t0022 a0001c0001t0038 a0001c0001t0050	a0001c0001t0004g0055 a0001c0001t0004g0059 a0001c0001t0004g0082 others(4): Show a0001c0001t0004g0055 a0001c0001t0004g0059 a0001c0001t0004g0082 a0001c0001t0022g0009 a0001c0001t0022g0056 a0001c0001t0038g0136 a0001c0001t0050g0124	7	144	0.0486	-16	c.44 others(27): Show c.4479_*4494delTTTTTTTTTTTTTTTT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding		821		chr18	TogoVar
CTLA4_chr2_203862771_203878965	203873327	CATATATA others(9): Show CATATATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01358.hp1 HG02717.hp2 NA20300.hp2 HG01358.hp1 HG02717.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0019 a0002c0002t0019 a0001c0001t0019 a0002c0002t0019	a0001c0001t0019g0003 a0002c0002t0019g0001 a0001c0001t0019g0003 a0002c0002t0019g0001	3	420	0.0071	-16	c.55 others(25): Show c.556_*571delATATATATATATATAT	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding	4/4	556	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA1_chr5_138748425_138940034	138755845	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0032 a0001c0002t0003g0032	1	180	0.0056	-16	c.-3+ others(31): Show c.-3+2355_-3+2370delTTTTTTTTTTTTTTTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138798197	AGTATTTG others(9): Show AGTATTTGTTGAGCTTT	A A	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0054 a0001c0002t0002g0054	1	180	0.0056	-16	c.302 others(35): Show c.302-11839_302-11824delTATTTGTTGAGCTTTG	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138799878	ATGTATGT others(9): Show ATGTATGTATGTATGTG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00741.hp1 HG01167.hp2 others(12): Show HG00438.hp2 HG00741.hp1 HG01167.hp2 HG01243.hp1 HG02074.hp2 HG02129.hp2 HG02486.hp1 HG02572.hp1 HG02717.hp2 HG02818.hp2 HG02895.hp2 HG02965.hp1 HG03516.hp1 NA18983.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0003 a0001c0001t0001 a0001c0002t0003	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 others(12): Show a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0002t0003g0004 a0001c0002t0003g0027 a0001c0002t0003g0032 a0001c0002t0003g0033 a0001c0002t0003g0034 a0001c0002t0003g0043 a0001c0002t0003g0044 a0001c0002t0003g0047 a0001c0002t0003g0048 a0001c0002t0003g0049	15	180	0.0833	-16	c.302 others(35): Show c.302-10156_302-10141delATGTATGTATGTGTGT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138850272	CCTGGATG others(9): Show CCTGGATGCCTCTATTT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 HG02809.hp1 others(2): Show HG02486.hp2 HG02630.hp2 HG02809.hp1 HG03225.hp2 HG03540.hp2	a0001 a0001	a0001c0004 a0001c0008 a0001c0009 a0001c0004 a0001c0008 a0001c0009	a0001c0004t0004 a0001c0008t0003 a0001c0009t0004 a0001c0004t0004 a0001c0008t0003 a0001c0009t0004	a0001c0004t0004g0005 a0001c0004t0004g0007 a0001c0004t0004g0180 others(2): Show a0001c0004t0004g0005 a0001c0004t0004g0007 a0001c0004t0004g0180 a0001c0008t0003g0030 a0001c0009t0004g0006	5	180	0.0278	-16	c.106 others(37): Show c.1062+22557_1062+22572delGGATGCCTCTATTTCT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA1_chr5_138748425_138940034	138866273	CATTTATT others(9): Show CATTTATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	180	0.0056	-16	c.106 others(37): Show c.1063-19898_1063-19883delATTTATTTATTTATTT	CTNNA1	ENSG00000044115.21	transcript	ENST00000302763.12	protein_coding	7/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(9): Show GTATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp2 HG02630.hp1 HG03209.hp1 HG01884.hp2 HG02630.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0004g0061 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0004g0061	3	68	0.0441	-16	c.-42 others(27): Show c.-4257_-4242delTATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79521107	GATATATA others(9): Show GATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03453.hp1 HG04228.hp1 HG03130.hp2 HG03453.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0013 a0001c0001 a0001c0002 a0001c0013	a0001c0001t0001 a0001c0002t0001 a0001c0013t0001 a0001c0001t0001 a0001c0002t0001 a0001c0013t0001	a0001c0001t0001g0052 a0001c0002t0001g0023 a0001c0013t0001g0062 a0001c0001t0001g0052 a0001c0002t0001g0023 a0001c0013t0001g0062	3	68	0.0441	-16	c.-6+ others(31): Show c.-6+7946_-6+7961delTATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79531195	CATATATA others(9): Show CATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02886.hp2 HG03139.hp1 others(2): Show HG02145.hp2 HG02886.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0002c0008	a0001c0001t0001 a0001c0002t0001 a0001c0009t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0009t0001 a0002c0008t0001	a0001c0001t0001g0001 a0001c0001t0001g0067 a0001c0002t0001g0004 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0067 a0001c0002t0001g0004 a0001c0009t0001g0003 a0002c0008t0001g0002	5	68	0.0735	-16	c.-6+ others(33): Show c.-6+18014_-6+18029delTATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79699788	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0001 a0001c0014t0001	a0001c0014t0001g0016 a0001c0014t0001g0016	1	68	0.0147	-16	c.103 others(35): Show c.103-44570_103-44555delACACACACACACACAC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79777327	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02630.hp1 HG02647.hp2 others(6): Show HG02622.hp2 HG02630.hp1 HG02647.hp2 HG02965.hp1 HG02965.hp2 HG03130.hp2 HG03471.hp1 HG03486.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0010 a0001c0013	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0004t0002 a0001c0010t0001 a0001c0013t0001	a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0056 others(6): Show a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0002t0001g0034 a0001c0003t0001g0038 a0001c0004t0002g0048 a0001c0010t0001g0024 a0001c0013t0001g0062	9	68	0.1324	-16	c.298 others(35): Show c.298+32779_298+32794delGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829360	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02622.hp2 HG02809.hp2 others(2): Show HG02145.hp2 HG02622.hp2 HG02809.hp2 HG02886.hp1 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0001 a0001c0004t0002	a0001c0001t0001g0001 a0001c0004t0001g0006 a0001c0004t0001g0021 others(2): Show a0001c0001t0001g0001 a0001c0004t0001g0006 a0001c0004t0001g0021 a0001c0004t0001g0032 a0001c0004t0002g0048	5	68	0.0735	-16	c.299 others(35): Show c.299-28613_299-28598delCACACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930242	CAAAGAAA others(9): Show CAAAGAAAGAAAGAAAG	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01106.hp2 HG01167.hp1 others(6): Show HG00735.hp1 HG01106.hp2 HG01167.hp1 HG01167.hp2 HG02109.hp2 HG02809.hp1 HG02970.hp1 HG02970.hp2 HG03471.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0006 others(1): Show a0001c0001 a0001c0002 a0002c0006 a0003c0015	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0002c0006t0001 a0003c0015t0001	a0001c0001t0001g0053 a0001c0001t0002g0027 a0001c0001t0002g0029 others(6): Show a0001c0001t0001g0053 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0001g0049 a0001c0002t0002g0065 a0002c0006t0001g0060 a0003c0015t0001g0014	9	68	0.1324	-16	c.105 others(37): Show c.1056+20467_1056+20482delAAGAAAGAAAGAAAGA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930294	GAGAAAGA others(9): Show GAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03130.hp2 HG03209.hp1 HG02622.hp2 HG03130.hp2 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0013 a0001c0001 a0001c0004 a0001c0013	a0001c0001t0001 a0001c0004t0002 a0001c0013t0001 a0001c0001t0001 a0001c0004t0002 a0001c0013t0001	a0001c0001t0001g0054 a0001c0004t0002g0048 a0001c0013t0001g0062 a0001c0001t0001g0054 a0001c0004t0002g0048 a0001c0013t0001g0062	3	68	0.0441	-16	c.105 others(37): Show c.1056+20546_1056+20561delAGAAAGAAAGAAAGAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930343	AGAAAGAA others(9): Show AGAAAGAAAGAAAGAAT	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03139.hp1 HG02145.hp1 HG03139.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0008 a0001c0001 a0002c0008	a0001c0001t0001 a0002c0008t0001 a0001c0001t0001 a0002c0008t0001	a0001c0001t0001g0050 a0002c0008t0001g0002 a0001c0001t0001g0050 a0002c0008t0001g0002	2	68	0.0294	-16	c.105 others(37): Show c.1056+20550_1056+20565delAGAAAGAAAGAATGAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79982192	CTATATAT others(9): Show CTATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0002 a0002c0008t0001g0002	1	68	0.0147	-16	c.105 others(37): Show c.1056+72429_1056+72444delATATATATATATATAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80004672	CATTTATT others(9): Show CATTTATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0001 a0001c0014t0001	a0001c0014t0001g0016 a0001c0014t0001g0016	1	68	0.0147	-16	c.105 others(37): Show c.1056+94898_1056+94913delTTATTTATTTATTTAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043024	TTTCTTTC others(9): Show TTTCTTTCTTTCTTTCC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0061 a0001c0001t0004g0061	1	68	0.0147	-16	c.105 others(39): Show c.1056+133243_1056+133258delCTTCTTTCTTTCTTTC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043085	TTCTTTCT others(9): Show TTCTTTCTTTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02965.hp1 NA18906.hp2 HG00735.hp2 HG02965.hp1 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0011 a0001c0002 a0001c0003 a0001c0011	a0001c0002t0002 a0001c0003t0001 a0001c0011t0001 a0001c0002t0002 a0001c0003t0001 a0001c0011t0001	a0001c0002t0002g0015 a0001c0003t0001g0038 a0001c0011t0001g0051 a0001c0002t0002g0015 a0001c0003t0001g0038 a0001c0011t0001g0051	3	68	0.0441	-16	c.105 others(39): Show c.1056+133292_1056+133307delTTCTTTCTCTCTCTCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80090146	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01106.hp2 HG00735.hp2 HG01106.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0047 a0001c0002t0002g0015 a0001c0002t0001g0047 a0001c0002t0002g0015	2	68	0.0294	-16	c.105 others(39): Show c.1056+180377_1056+180392delGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126584	TTCCCTCC others(9): Show TTCCCTCCCTCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0002 a0002c0008t0001g0002	1	68	0.0147	-16	c.105 others(39): Show c.1056+216825_1056+216840delCCCTCCCTCCCTCCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126622	CCCTCCCT others(9): Show CCCTCCCTCCCTCCCTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	68	0.0147	-16	c.105 others(39): Show c.1056+216829_1056+216844delCCCTCCCTCCCTTCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126626	CCCTCCCT others(9): Show CCCTCCCTCCCTTCCTT	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 NA18906.hp2 HG02647.hp1 NA18906.hp2	a0001 a0001	a0001c0004 a0001c0011 a0001c0004 a0001c0011	a0001c0004t0001 a0001c0011t0001 a0001c0004t0001 a0001c0011t0001	a0001c0004t0001g0059 a0001c0011t0001g0051 a0001c0004t0001g0059 a0001c0011t0001g0051	2	68	0.0294	-16	c.105 others(39): Show c.1056+216833_1056+216848delCCCTCCCTTCCTTCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80146935	TTTTATTT others(9): Show TTTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02622.hp1 HG02886.hp2 others(6): Show HG02572.hp2 HG02622.hp1 HG02886.hp2 HG02965.hp2 HG03130.hp1 HG03139.hp2 HG03453.hp1 HG03471.hp2 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0009 a0001c0010 a0002c0006	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0007t0001 a0001c0009t0001 a0001c0010t0001 a0002c0006t0001	a0001c0001t0001g0067 a0001c0002t0001g0007 a0001c0002t0001g0023 others(6): Show a0001c0001t0001g0067 a0001c0002t0001g0007 a0001c0002t0001g0023 a0001c0003t0001g0013 a0001c0007t0001g0068 a0001c0009t0001g0003 a0001c0010t0001g0024 a0002c0006t0001g0020 a0002c0006t0001g0060	9	68	0.1324	-16	c.105 others(39): Show c.1056+237170_1056+237185delATTTATTTATTTATTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80149774	TCACACAC others(9): Show TCACACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0027	1	68	0.0147	-16	c.105 others(39): Show c.1056+240004_1056+240019delCACACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80294438	ACCTGACC others(9): Show ACCTGACCCCATGGAGC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00673.hp2 HG00735.hp2 others(5): Show HG00642.hp2 HG00673.hp2 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG02965.hp1 HG04228.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0012	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0005t0002 a0001c0012t0002	a0001c0001t0001g0046 a0001c0001t0002g0066 a0001c0002t0001g0035 others(5): Show a0001c0001t0001g0046 a0001c0001t0002g0066 a0001c0002t0001g0035 a0001c0002t0001g0047 a0001c0002t0002g0015 a0001c0003t0001g0038 a0001c0005t0002g0009 a0001c0012t0002g0019	8	68	0.1177	-16	c.105 others(37): Show c.1057-98738_1057-98723delTGACCCCATGGAGCCC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80300279	GGGGTGTG others(9): Show GGGGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG02148.hp2 HG02622.hp2 others(2): Show HG00642.hp1 HG02148.hp2 HG02622.hp2 HG02886.hp2 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0005 others(1): Show a0001c0002 a0001c0004 a0001c0005 a0001c0009	a0001c0002t0001 a0001c0004t0002 a0001c0005t0002 others(1): Show a0001c0002t0001 a0001c0004t0002 a0001c0005t0002 a0001c0009t0001	a0001c0002t0001g0034 a0001c0004t0002g0048 a0001c0005t0002g0043 others(2): Show a0001c0002t0001g0034 a0001c0004t0002g0048 a0001c0005t0002g0043 a0001c0005t0002g0063 a0001c0009t0001g0003	5	68	0.0735	-16	c.105 others(37): Show c.1057-92930_1057-92915delGGTGTGTGTGTGTGTG	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80596279	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0041 a0001c0001t0002g0041	1	68	0.0147	-16	c.218 others(35): Show c.2189+6827_2189+6842delTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	15/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80606398	ACACACAC others(9): Show ACACACACACACACACC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00673.hp1 HG02572.hp1 others(5): Show HG00642.hp1 HG00673.hp1 HG02572.hp1 HG02630.hp2 HG02809.hp2 HG02886.hp1 HG03139.hp2 HG03471.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(3): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005 a0001c0014 a0002c0006	a0001c0001t0001 a0001c0003t0002 a0001c0004t0001 others(3): Show a0001c0001t0001 a0001c0003t0002 a0001c0004t0001 a0001c0005t0002 a0001c0014t0001 a0002c0006t0001	a0001c0001t0001g0067 a0001c0003t0002g0044 a0001c0004t0001g0021 others(5): Show a0001c0001t0001g0067 a0001c0003t0002g0044 a0001c0004t0001g0021 a0001c0004t0001g0032 a0001c0005t0002g0043 a0001c0014t0001g0016 a0002c0006t0001g0040 a0002c0006t0001g0060	8	68	0.1177	-16	c.229 others(35): Show c.2296-1784_2296-1769delACACACACACACACCC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	16/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA3_chr10_65907523_67701195	66115524	TGATAGAT others(9): Show TGATAGATAGATAGATA	T T	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0022 a0001c0003t0022	a0001c0003t0022g0022 a0001c0003t0022g0022	1	46	0.0217	-16	c.188 others(37): Show c.1885-12291_1885-12276delTATCTATCTATCTATC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66157475	ATAGATAG others(9): Show ATAGATAGATAGATATG	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0014 a0002c0002t0005g0014	1	46	0.0217	-16	c.188 others(37): Show c.1885-54242_1885-54227delCATATCTATCTATCTA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66157491	GTAGATAG others(9): Show GTAGATAGATAGATAGA	G G	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02717.hp1 HG02717.hp2 others(4): Show HG02622.hp1 HG02717.hp1 HG02717.hp2 HG02895.hp1 HG02896.hp1 HG03130.hp1 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0011	a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0003t0014 a0001c0004t0007 a0001c0011t0009	a0001c0001t0001g0006 a0001c0001t0004g0043 a0001c0001t0007g0020 others(4): Show a0001c0001t0001g0006 a0001c0001t0004g0043 a0001c0001t0007g0020 a0001c0001t0009g0031 a0001c0003t0014g0025 a0001c0004t0007g0005 a0001c0011t0009g0017	7	46	0.1522	-16	c.188 others(37): Show c.1885-54258_1885-54243delTCTATCTATCTATCTA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66266111	GGAAGGAA others(9): Show GGAAGGAAGGAAGGAAA	G G	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02818.hp1 HG02922.hp2 others(5): Show HG02622.hp1 HG02818.hp1 HG02922.hp2 HG02965.hp1 HG03540.hp2 HG03579.hp2 NA18960.hp1 NA19080.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0010 a0001c0001 a0005c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0019 a0001c0001t0020 a0001c0001t0024 a0005c0010t0002	a0001c0001t0002g0009 a0001c0001t0003g0023 a0001c0001t0004g0041 others(5): Show a0001c0001t0002g0009 a0001c0001t0003g0023 a0001c0001t0004g0041 a0001c0001t0007g0020 a0001c0001t0019g0019 a0001c0001t0020g0030 a0001c0001t0024g0044 a0005c0010t0002g0021	8	46	0.1739	-16	c.188 others(37): Show c.1884+14343_1884+14358delTTTCCTTCCTTCCTTC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	13/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66309906	AAAATAAA others(9): Show AAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0028 a0002c0002t0004g0028	1	46	0.0217	-16	c.173 others(37): Show c.1733-29301_1733-29286delATTTATTTATTTATTT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360650	TCTTTCTT others(9): Show TCTTTCTTTCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0024 a0001c0001t0002g0024	1	46	0.0217	-16	c.173 others(37): Show c.1732+18486_1732+18501delGAAGGAAGAAAGAAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360654	TCTTTCTT others(9): Show TCTTTCTTCCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0026 a0002c0002t0026	a0002c0002t0026g0046 a0002c0002t0026g0046	1	46	0.0217	-16	c.173 others(37): Show c.1732+18482_1732+18497delGAAGGAAGGAAGAAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360739	TCTTTCTT others(9): Show TCTTTCTTCCTTCCTTC	T T	intron_variant intron_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0010 a0001c0001t0005g0010	1	46	0.0217	-16	c.173 others(37): Show c.1732+18397_1732+18412delGAAGGAAGGAAGAAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360757	TTCCTTCC others(9): Show TTCCTTCCTTCCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0015 a0001c0007t0015	a0001c0007t0015g0016 a0001c0007t0015g0016	1	46	0.0217	-16	c.173 others(37): Show c.1732+18379_1732+18394delGAAAAGGAAGGAAGGA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar

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