Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GALNT15_chr3_16169680_16235165	16232469	AATATATA others(9): Show AATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02559.hp2 HG02717.hp2 HG03041.hp2 others(2): Show HG02559.hp2 HG02717.hp2 HG03041.hp2 HG03579.hp1 NA18522.hp1	a0001 a0007 a0011 a0001 a0007 a0011	a0001c0007 a0007c0019 a0011c0037 a0001c0007 a0007c0019 a0011c0037	a0001c0007t0008 a0007c0019t0007 a0011c0037t0007 a0001c0007t0008 a0007c0019t0007 a0011c0037t0007	a0001c0007t0008g0178 a0001c0007t0008g0181 a0007c0019t0007g0014 others(2): Show a0001c0007t0008g0178 a0001c0007t0008g0181 a0007c0019t0007g0014 a0007c0019t0007g0355 a0011c0037t0007g0352	5	388	0.0129	-16	c.49 others(27): Show c.4970_*4985delATATATATATATATAT	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding		2305		chr3	TogoVar
GALNT15_chr3_16169680_16235165	16232500	ATATATAT others(9): Show ATATATATATATTTATT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp1 HG02809.hp1 NA18959.hp2 others(1): Show HG02615.hp1 HG02809.hp1 NA18959.hp2 NA18977.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0021 a0003c0012 a0001c0001 a0001c0021 a0003c0012	a0001c0001t0001 a0001c0021t0001 a0003c0012t0003 a0001c0001t0001 a0001c0021t0001 a0003c0012t0003	a0001c0001t0001g0249 a0001c0001t0001g0275 a0001c0021t0001g0045 others(1): Show a0001c0001t0001g0249 a0001c0001t0001g0275 a0001c0021t0001g0045 a0003c0012t0003g0067	4	388	0.0103	-16	c.50 others(27): Show c.5001_*5016delTATATATATATTTATT	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding		2336		chr3	TogoVar
GALNT16_chr14_69255158_69359466	69296805	CTAGATAG others(9): Show CTAGATAGATAGATAGA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00408.hp1 HG00438.hp2 others(70): Show HG00140.hp2 HG00408.hp1 HG00438.hp2 HG00558.hp1 HG00609.hp1 HG00621.hp1 HG01069.hp2 HG01071.hp1 HG01123.hp2 HG01175.hp1 HG01255.hp1 HG01361.hp1 HG01433.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp2 HG01934.hp2 HG01943.hp1 HG02074.hp2 HG02132.hp1 HG02135.hp1 HG02257.hp1 HG02451.hp2 HG02523.hp1 HG02602.hp1 HG02622.hp1 HG02735.hp2 HG02965.hp2 HG03225.hp2 HG03491.hp2 HG03492.hp2 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03704.hp1 HG03927.hp1 HG03927.hp2 HG04204.hp2 NA18747.hp1 NA18941.hp2 NA18945.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18963.hp2 NA18966.hp1 NA18968.hp1 NA18971.hp2 NA18973.hp2 NA18975.hp2 NA18981.hp2 NA18984.hp1 NA18984.hp2 NA18989.hp2 NA18990.hp2 NA18994.hp1 NA18995.hp2 NA18997.hp2 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19068.hp2 NA19085.hp1 NA19087.hp2 NA19088.hp1 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0009	a0001c0001 a0001c0003 a0001c0005 others(4): Show a0001c0001 a0001c0003 a0001c0005 a0001c0008 a0002c0002 a0003c0004 a0009c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0019 a0001c0001t0020 a0001c0001t0025 a0001c0001t0027 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0005t0006 a0001c0008t0002 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0003c0004t0001 a0009c0018t0002	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0043 others(69): Show a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0043 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0102 a0001c0001t0001g0152 a0001c0001t0001g0164 a0001c0001t0001g0166 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0176 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0193 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0217 a0001c0001t0001g0221 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0236 a0001c0001t0002g0042 a0001c0001t0002g0181 a0001c0001t0002g0210 a0001c0001t0002g0242 a0001c0001t0003g0019 a0001c0001t0003g0030 a0001c0001t0003g0104 a0001c0001t0003g0160 a0001c0001t0004g0099 a0001c0001t0005g0048 a0001c0001t0005g0298 a0001c0001t0008g0094 a0001c0001t0019g0167 a0001c0001t0020g0194 a0001c0001t0025g0185 a0001c0001t0027g0077 a0001c0003t0001g0154 a0001c0003t0001g0169 a0001c0003t0001g0216 a0001c0003t0001g0219 a0001c0003t0001g0230 a0001c0003t0002g0071 a0001c0003t0003g0029 a0001c0005t0006g0140 a0001c0005t0006g0141 a0001c0008t0002g0190 a0002c0002t0001g0069 a0002c0002t0001g0107 a0002c0002t0001g0108 a0002c0002t0001g0178 a0002c0002t0001g0179 a0002c0002t0001g0187 a0002c0002t0001g0188 a0002c0002t0001g0248 a0002c0002t0001g0299 a0002c0002t0001g0303 a0002c0002t0002g0038 a0002c0002t0002g0234 a0002c0002t0003g0215 a0003c0004t0001g0145 a0003c0004t0001g0161 a0009c0018t0002g0295	73	306	0.2386	-16	c.178 others(35): Show c.178-23880_178-23865delAGATAGATAGATAGAT	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT16_chr14_69255158_69359466	69322975	TGTGTGTG others(9): Show TGTGTGTGCGCGCGCAC	T T	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01496.hp1 HG02976.hp1 HG01081.hp2 HG01496.hp1 HG02976.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0009 a0003c0004t0009	a0003c0004t0009g0147 a0003c0004t0009g0150 a0003c0004t0009g0151 a0003c0004t0009g0147 a0003c0004t0009g0150 a0003c0004t0009g0151	3	306	0.0098	-16	c.336 others(33): Show c.336-1715_336-1700delTGTGTGCGCGCGCACG	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT17_chr7_71127144_71718599	71187461	TGAGTTAC others(9): Show TGAGTTACGCTCACTTC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01261.hp1 HG00735.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0004 a0001c0001t0001 a0001c0004t0004	a0001c0001t0001g0041 a0001c0004t0004g0030 a0001c0001t0001g0041 a0001c0004t0004g0030	2	76	0.0263	-16	c.238 others(35): Show c.238+54422_238+54437delGAGTTACGCTCACTTC	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	1/10			chr7	TogoVar
GALNT17_chr7_71127144_71718599	71193066	CATTTATT others(9): Show CATTTATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG03130.hp2 HG03579.hp1 HG02615.hp2 HG03130.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0002 a0001c0001t0013	a0001c0001t0002g0024 a0001c0001t0002g0027 a0001c0001t0013g0073 a0001c0001t0002g0024 a0001c0001t0002g0027 a0001c0001t0013g0073	3	76	0.0395	-16	c.238 others(35): Show c.238+60059_238+60074delATTTATTTATTTATTT	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71523744	AAAATAAA others(9): Show AAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0075 a0001c0001t0013g0075	1	76	0.0132	-16	c.963 others(35): Show c.963-47514_963-47499delATAAATAAATAAATAA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71530537	AATTTATT others(9): Show AATTTATTTATTTATTT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00735.hp1 HG01106.hp2 others(14): Show HG00323.hp2 HG00735.hp1 HG01106.hp2 HG01433.hp1 HG02109.hp2 HG02280.hp1 HG02451.hp2 HG02615.hp2 HG02717.hp1 HG02896.hp2 HG03490.hp2 HG03492.hp1 HG03669.hp1 HG03704.hp2 HG03710.hp2 HG04228.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0002c0010	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(8): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0013 a0001c0001t0017 a0001c0002t0008 a0001c0009t0010 a0002c0010t0003	a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0041 others(14): Show a0001c0001t0001g0032 a0001c0001t0001g0034 a0001c0001t0001g0041 a0001c0001t0001g0045 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0035 a0001c0001t0004g0046 a0001c0001t0005g0054 a0001c0001t0006g0057 a0001c0001t0008g0022 a0001c0001t0009g0061 a0001c0001t0013g0073 a0001c0001t0017g0047 a0001c0002t0008g0025 a0001c0009t0010g0071 a0002c0010t0003g0009	17	76	0.2237	-16	c.963 others(35): Show c.963-40711_963-40696delATTTATTTATTTATTT	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71680304	CTCCCTTC others(9): Show CTCCCTTCCTCCCTCTA	C C	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0052 a0001c0001t0005g0052	1	76	0.0132	-16	c.150 others(35): Show c.1500+3013_1500+3028delTATCCCTTCCTCCCTC	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71680519	TCTCCCTT others(9): Show TCTCCCTTCCTCCCTCC	T T	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG03490.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	76	0.0132	-16	c.150 others(35): Show c.1500+3233_1500+3248delCCTTCCTCCCTCCCTC	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT18_chr11_11265877_11627005	11344734	CTGAGCCT others(9): Show CTGAGCCTACCTCAGTG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00438.hp2 HG00408.hp1 HG00438.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0008 a0001c0003 a0002c0008	a0001c0003t0001 a0002c0008t0001 a0001c0003t0001 a0002c0008t0001	a0001c0003t0001g0188 a0002c0008t0001g0220 a0001c0003t0001g0188 a0002c0008t0001g0220	2	260	0.0077	-16	c.109 others(35): Show c.1093-3746_1093-3731delCACTGAGGTAGGCTCA	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	6/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11490219	TCTCTCTC others(9): Show TCTCTCTCTCTCTCTAA	T T	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02717.hp2 HG02886.hp2 others(4): Show HG02647.hp1 HG02717.hp2 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0002 a0001c0004t0001	a0001c0001t0001g0180 a0001c0001t0001g0246 a0001c0001t0001g0247 others(4): Show a0001c0001t0001g0180 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0002g0041 a0001c0002t0001g0154 a0001c0003t0002g0040 a0001c0004t0001g0231	7	260	0.0269	-16	c.236 others(35): Show c.236-41299_236-41284delTTAGAGAGAGAGAGAG	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11594838	TATACACA others(9): Show TATACACATATACATAC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02615.hp2 HG03471.hp2 HG02109.hp1 HG02615.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0015 a0001c0001 a0001c0002 a0001c0015	a0001c0001t0002 a0001c0002t0003 a0001c0015t0001 a0001c0001t0002 a0001c0002t0003 a0001c0015t0001	a0001c0001t0002g0011 a0001c0002t0003g0159 a0001c0015t0001g0229 a0001c0001t0002g0011 a0001c0002t0003g0159 a0001c0015t0001g0229	3	260	0.0115	-16	c.235 others(35): Show c.235+26505_235+26520delGTATGTATATGTGTAT	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT1_chr18_35576740_35716834	35606821	TTGTGTGT others(9): Show TTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02615.hp2 HG03139.hp1 HG02572.hp1 HG02615.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0001g0291	3	310	0.0097	-16	c.-10 others(37): Show c.-104+24995_-104+25010delGTGTGTGTGTGTGTGT	GALNT1	ENSG00000141429.14	transcript	ENST00000269195.6	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALNT1_chr18_35576740_35716834	35648048	AAGGAAGG others(9): Show AAGGAAGGGAGGAAGTG	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02280.hp2 HG02451.hp2 others(3): Show HG02258.hp1 HG02280.hp2 HG02451.hp2 HG02622.hp2 HG03139.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0165 a0001c0001t0002g0166 a0001c0001t0002g0002 a0001c0001t0002g0165 a0001c0001t0002g0166	6	310	0.0194	-16	c.-10 others(35): Show c.-103-6487_-103-6472delAGGAAGTGAGGAAGGG	GALNT1	ENSG00000141429.14	transcript	ENST00000269195.6	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALNT2_chr1_230062238_230287122	230285357	TCTTAGAC others(9): Show TCTTAGACTCCCCACCC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02622.hp1 HG03041.hp2 HG02486.hp1 HG02622.hp1 HG03041.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0018 a0001c0003t0018 a0001c0002t0018 a0001c0003t0018	a0001c0002t0018g0287 a0001c0003t0018g0288 a0001c0003t0018g0306 a0001c0002t0018g0287 a0001c0003t0018g0288 a0001c0003t0018g0306	3	324	0.0093	-16	c.59 others(27): Show c.5900_*5915delCTTAGACTCCCCACCC	GALNT2	ENSG00000143641.10	transcript	ENST00000366672.5	protein_coding		3236		chr1	TogoVar
GALNT3_chr2_165742588_165799247	165765508	TTTATGGA others(9): Show TTTATGGAGTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0072 a0001c0001t0002g0072	1	386	0.0026	-16	c.516 others(31): Show c.516-468_516-453delGAGAGAGACTCCATAA	GALNT3	ENSG00000115339.14	transcript	ENST00000392701.8	protein_coding	2/10			chr2	TogoVar
GALNT3_chr2_165742588_165799247	165797028	TACACACA others(9): Show TACACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0232 a0004c0006t0001g0232	1	386	0.0026	-16	c.-31 others(27): Show c.-3138_-3123delGTGTGTGTGTGTGTGT	GALNT3	ENSG00000115339.14	transcript	ENST00000392701.8	protein_coding		2782		chr2	TogoVar
GALNT5_chr2_157252705_157323491	157256569	AATATATA others(9): Show AATATATATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 HG01358.hp2 HG01934.hp1 HG01106.hp1 HG01358.hp2 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0017 a0001c0001t0003g0018 a0001c0001t0003g0019 a0001c0001t0001g0017 a0001c0001t0003g0018 a0001c0001t0003g0019	3	282	0.0106	-16	c.-15 others(27): Show c.-1513_-1498delATATATATATATATAT	GALNT5	ENSG00000136542.9	transcript	ENST00000259056.5	protein_coding		1135		chr2	TogoVar
GALNT5_chr2_157252705_157323491	157286893	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02886.hp2 HG03130.hp1 HG02258.hp1 HG02886.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0082 a0001c0002t0010 a0001c0002t0077 a0001c0001t0082 a0001c0002t0010 a0001c0002t0077	a0001c0001t0082g0260 a0001c0002t0010g0252 a0001c0002t0077g0250 a0001c0001t0082g0260 a0001c0002t0010g0252 a0001c0002t0077g0250	3	282	0.0106	-16	c.174 others(33): Show c.1741+788_1741+803delGTGTGTGTGTGTGTGT	GALNT5	ENSG00000136542.9	transcript	ENST00000259056.5	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
GALNT6_chr12_51346252_51396406	51347995	AAAATAAA others(9): Show AAAATAAATAAATAAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0036 a0001c0001t0017g0036	1	428	0.0023	-16	c.63 others(27): Show c.6368_*6383delATTTATTTATTTATTT	GALNT6	ENSG00000139629.16	transcript	ENST00000356317.8	protein_coding		3256		chr12	TogoVar
GALNT6_chr12_51346252_51396406	51395579	CACCTCTG others(9): Show CACCTCTGGTGGGGCAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0295 a0001c0001t0007g0295	1	428	0.0023	-16	c.-45 others(27): Show c.-4500_-4485delCTGCCCCACCAGAGGT	GALNT6	ENSG00000139629.16	transcript	ENST00000356317.8	protein_coding		4174		chr12	TogoVar
GALNT7_chr4_173163811_173328967	173167583	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02273.hp1 NA19002.hp1 HG02273.hp1 NA19002.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0002 a0001c0002t0001 a0001c0003t0002	a0001c0002t0001g0231 a0001c0003t0002g0246 a0001c0002t0001g0231 a0001c0003t0002g0246	2	266	0.0075	-16	c.-12 others(27): Show c.-1252_-1237delAAAAAAAAAAAAAAAA	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding		1227		chr4	TogoVar
GALNT7_chr4_173163811_173328967	173178046	TGTGTGTG others(9): Show TGTGTGTGCGCGCACGC	T T	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG02055.hp2 HG02258.hp2 others(2): Show HG01257.hp1 HG02055.hp2 HG02258.hp2 HG02965.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0060 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0060 a0001c0001t0001g0087 a0001c0001t0001g0088	5	266	0.0188	-16	c.126 others(33): Show c.126+9087_126+9102delTGTGTGCGCGCACGCG	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT7_chr4_173163811_173328967	173183043	AACACACA others(9): Show AACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG02257.hp2 HG03041.hp2 others(4): Show HG01346.hp1 HG02257.hp2 HG03041.hp2 NA18966.hp2 NA19005.hp1 NA19064.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0044 a0001c0001t0001g0101 a0001c0001t0001g0102 others(4): Show a0001c0001t0001g0044 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0265 a0001c0001t0002g0027 a0001c0001t0003g0078	7	266	0.0263	-16	c.126 others(35): Show c.126+14115_126+14130delACACACACACACACAC	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT7_chr4_173163811_173328967	173240357	ATTTTTTT others(9): Show ATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0174 a0001c0002t0001g0174	1	266	0.0038	-16	c.127 others(33): Show c.127-7609_127-7594delTTTTTTTTTTTTTTTT	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT7_chr4_173163811_173328967	173266868	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG04184.hp2 NA20752.hp2 HG01978.hp1 HG04184.hp2 NA20752.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0001 a0001c0005t0003 a0001c0002t0001 a0001c0005t0003	a0001c0002t0001g0016 a0001c0002t0001g0225 a0001c0005t0003g0092 a0001c0002t0001g0016 a0001c0002t0001g0225 a0001c0005t0003g0092	3	266	0.0113	-16	c.587 others(35): Show c.587+18472_587+18487delTGTGTGTGTGTGTGTG	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT7_chr4_173163811_173328967	173290238	GACTATGG others(9): Show GACTATGGAACAGCCAT	G G	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA19081.hp2 NA18948.hp1 NA19081.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0206 a0001c0002t0001g0219 a0001c0002t0001g0206 a0001c0002t0001g0219	2	266	0.0075	-16	c.588 others(33): Show c.588-1844_588-1829delCAGCCATACTATGGAA	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT8_chr12_4715400_4777726	4758623	TGTGTGTG others(9): Show TGTGTGTGTGTGTGTGA	T T	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0008 a0013c0019t0008	a0013c0019t0008g0275 a0013c0019t0008g0275	1	338	0.0030	-16	c.117 others(35): Show c.1174-2333_1174-2318delTGTGTGTGTGTGTGAG	GALNT8	ENSG00000130035.9	transcript	ENST00000252318.7	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
GALNT8_chr12_4715400_4777726	4758627	TGTGTGTG others(9): Show TGTGTGTGTGTGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0018 a0018	a0018c0023 a0018c0023	a0018c0023t0001 a0018c0023t0001	a0018c0023t0001g0267 a0018c0023t0001g0267	1	338	0.0030	-16	c.117 others(35): Show c.1174-2329_1174-2314delTGTGTGTGTGAGAGAG	GALNT8	ENSG00000130035.9	transcript	ENST00000252318.7	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
GALNT8_chr12_4715400_4777726	4758631	TGTGTGTG others(9): Show TGTGTGTGAGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG01081.hp1 NA21309.hp1 HG01081.hp1 NA21309.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0150 a0002c0002t0002g0153 a0002c0002t0002g0150 a0002c0002t0002g0153	2	338	0.0059	-16	c.117 others(35): Show c.1174-2325_1174-2310delTGTGTGAGAGAGAGAG	GALNT8	ENSG00000130035.9	transcript	ENST00000252318.7	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
GALNT9_chr12_132191372_132334589	132223139	ACACACAC others(9): Show ACACACACCACACAACC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00280.hp2 others(127): Show HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00423.hp1 HG00423.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp1 HG01070.hp1 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01346.hp1 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02615.hp2 HG02698.hp2 HG02735.hp1 HG02738.hp1 HG02738.hp2 HG02895.hp1 HG02965.hp1 HG02965.hp2 HG02976.hp2 HG03017.hp2 HG03041.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03579.hp1 HG03579.hp2 HG03688.hp2 HG03834.hp2 HG03942.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp2 NA18945.hp1 NA18945.hp2 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18953.hp2 NA18961.hp1 NA18961.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18966.hp1 NA18966.hp2 NA18971.hp1 NA18971.hp2 NA18980.hp1 NA18980.hp2 NA18999.hp1 NA19002.hp1 NA19004.hp1 NA19004.hp2 NA19007.hp1 NA19007.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19056.hp1 NA19056.hp2 NA19063.hp1 NA19063.hp2 NA19067.hp2 NA19070.hp2 NA19080.hp1 NA19080.hp2 NA19085.hp1 NA19085.hp2 NA19091.hp1 NA19091.hp2 NA20805.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0001c0002 a0001c0003 others(21): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0008 a0001c0009 a0001c0010 a0001c0012 a0001c0015 a0001c0018 a0001c0022 a0001c0025 a0001c0028 a0001c0030 a0001c0031 a0001c0035 a0001c0036 a0001c0038 a0001c0040 a0004c0024 a0006c0037	a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 others(25): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 a0001c0002t0001 a0001c0002t0013 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0010 a0001c0008t0002 a0001c0009t0002 a0001c0010t0001 a0001c0012t0002 a0001c0015t0001 a0001c0018t0001 a0001c0022t0001 a0001c0025t0012 a0001c0028t0001 a0001c0030t0001 a0001c0031t0001 a0001c0035t0009 a0001c0036t0003 a0001c0038t0001 a0001c0040t0007 a0004c0024t0001 a0006c0037t0001	a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0017 others(127): Show a0001c0001t0001g0005 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0023 a0001c0001t0001g0027 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0075 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0111 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0122 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0136 a0001c0001t0001g0143 a0001c0001t0001g0156 a0001c0001t0001g0161 a0001c0001t0001g0164 a0001c0001t0008g0003 a0001c0001t0011g0050 a0001c0002t0001g0004 a0001c0002t0001g0022 a0001c0002t0001g0025 a0001c0002t0001g0034 a0001c0002t0001g0053 a0001c0002t0001g0058 a0001c0002t0001g0063 a0001c0002t0001g0069 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0079 a0001c0002t0001g0080 a0001c0002t0001g0100 a0001c0002t0001g0101 a0001c0002t0001g0105 a0001c0002t0001g0130 a0001c0002t0001g0134 a0001c0002t0001g0135 a0001c0002t0001g0141 a0001c0002t0001g0151 a0001c0002t0001g0152 a0001c0002t0001g0163 a0001c0002t0013g0021 a0001c0003t0001g0006 a0001c0003t0001g0007 a0001c0003t0001g0012 a0001c0003t0001g0014 a0001c0003t0001g0030 a0001c0003t0001g0041 a0001c0003t0001g0123 a0001c0003t0001g0128 a0001c0003t0001g0162 a0001c0003t0001g0165 a0001c0003t0001g0166 a0001c0004t0001g0016 a0001c0004t0001g0020 a0001c0004t0001g0056 a0001c0004t0001g0060 a0001c0004t0001g0076 a0001c0004t0001g0106 a0001c0004t0001g0109 a0001c0004t0001g0112 a0001c0004t0001g0154 a0001c0004t0001g0157 a0001c0005t0001g0018 a0001c0005t0001g0026 a0001c0005t0001g0037 a0001c0005t0001g0088 a0001c0005t0001g0113 a0001c0006t0001g0013 a0001c0007t0001g0015 a0001c0007t0001g0061 a0001c0007t0001g0138 a0001c0007t0001g0159 a0001c0007t0010g0108 a0001c0008t0002g0170 a0001c0008t0002g0171 a0001c0008t0002g0172 a0001c0008t0002g0173 a0001c0008t0002g0176 a0001c0008t0002g0182 a0001c0009t0002g0168 a0001c0009t0002g0169 a0001c0009t0002g0174 a0001c0009t0002g0175 a0001c0009t0002g0177 a0001c0010t0001g0085 a0001c0010t0001g0086 a0001c0010t0001g0087 a0001c0010t0001g0089 a0001c0012t0002g0179 a0001c0012t0002g0180 a0001c0012t0002g0181 a0001c0012t0002g0183 a0001c0015t0001g0024 a0001c0018t0001g0039 a0001c0022t0001g0120 a0001c0025t0012g0048 a0001c0028t0001g0144 a0001c0030t0001g0110 a0001c0031t0001g0038 a0001c0035t0009g0140 a0001c0036t0003g0055 a0001c0038t0001g0046 a0001c0040t0007g0002 a0004c0024t0001g0160 a0006c0037t0001g0010	130	183	0.7104	-16	c.107 others(37): Show c.1078-19465_1078-19450delGGTTGTGTGGTGTGTG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132224534	TACACCCC others(9): Show TACACCCCACACAACCC	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00733.hp1 others(11): Show HG00408.hp1 HG00408.hp2 HG00733.hp1 HG01175.hp2 HG02027.hp1 HG02683.hp1 HG02698.hp1 NA18522.hp1 NA18952.hp2 NA18964.hp2 NA18999.hp2 NA19002.hp2 NA19067.hp1 NA19070.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0011 others(5): Show a0001c0001 a0001c0002 a0001c0011 a0001c0013 a0001c0020 a0001c0034 a0001c0039 a0003c0033	a0001c0001t0001 a0001c0002t0001 a0001c0011t0001 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0011t0001 a0001c0013t0004 a0001c0020t0001 a0001c0034t0004 a0001c0039t0006 a0003c0033t0001	a0001c0001t0001g0017 a0001c0001t0001g0027 a0001c0002t0001g0068 others(11): Show a0001c0001t0001g0017 a0001c0001t0001g0027 a0001c0002t0001g0068 a0001c0011t0001g0057 a0001c0011t0001g0065 a0001c0011t0001g0116 a0001c0011t0001g0129 a0001c0013t0004g0036 a0001c0013t0004g0095 a0001c0013t0004g0124 a0001c0020t0001g0115 a0001c0034t0004g0158 a0001c0039t0006g0001 a0003c0033t0001g0114	14	183	0.0765	-16	c.107 others(37): Show c.1078-20860_1078-20845delGGGTTGTGTGGGGTGT	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132303449	GCACACCC others(9): Show GCACACCCTCGCCCGGA	G G	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0003 a0001c0019t0003	a0001c0019t0003g0077 a0001c0019t0003g0077	1	183	0.0055	-16	c.239 others(35): Show c.239-17035_239-17020delTCCGGGCGAGGGTGTG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132303475	ACCCGGGC others(9): Show ACCCGGGCACAGAATCG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00609.hp2 others(59): Show HG00140.hp1 HG00280.hp1 HG00609.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp1 HG01175.hp1 HG01175.hp2 HG01346.hp2 HG01433.hp1 HG01928.hp1 HG01928.hp2 HG01978.hp1 HG02027.hp1 HG02055.hp2 HG02083.hp1 HG02083.hp2 HG02132.hp2 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02683.hp2 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02738.hp1 HG02809.hp1 HG02965.hp1 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp2 HG03453.hp1 HG03486.hp1 HG03492.hp1 HG03492.hp2 HG03579.hp1 HG03579.hp2 HG03834.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18945.hp2 NA18953.hp2 NA18980.hp2 NA18999.hp1 NA19002.hp1 NA19009.hp1 NA19012.hp2 NA19070.hp1 NA19085.hp1 NA19091.hp1 homoSapiens_chm13v2.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0001c0002 a0001c0003 others(15): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0011 a0001c0013 a0001c0014 a0001c0026 a0001c0029 a0001c0036 a0001c0038 a0001c0039 a0001c0040 a0006c0037	a0001c0001t0001 a0001c0002t0001 a0001c0002t0005 others(17): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0005 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0010 a0001c0010t0001 a0001c0011t0001 a0001c0013t0004 a0001c0014t0003 a0001c0026t0014 a0001c0029t0003 a0001c0036t0003 a0001c0038t0001 a0001c0039t0006 a0001c0040t0007 a0006c0037t0001	a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0033 others(59): Show a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0150 a0001c0002t0001g0034 a0001c0002t0001g0053 a0001c0002t0001g0058 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0001g0071 a0001c0002t0001g0081 a0001c0002t0001g0100 a0001c0002t0001g0101 a0001c0002t0001g0151 a0001c0002t0001g0152 a0001c0002t0005g0066 a0001c0003t0001g0006 a0001c0003t0001g0007 a0001c0003t0001g0012 a0001c0003t0001g0014 a0001c0003t0001g0041 a0001c0003t0001g0103 a0001c0003t0001g0137 a0001c0004t0001g0016 a0001c0005t0001g0008 a0001c0005t0001g0018 a0001c0005t0001g0026 a0001c0005t0001g0037 a0001c0005t0001g0088 a0001c0006t0001g0013 a0001c0006t0001g0073 a0001c0007t0001g0015 a0001c0007t0001g0061 a0001c0007t0001g0104 a0001c0007t0010g0108 a0001c0010t0001g0085 a0001c0010t0001g0086 a0001c0010t0001g0087 a0001c0010t0001g0089 a0001c0011t0001g0065 a0001c0013t0004g0036 a0001c0014t0003g0074 a0001c0014t0003g0146 a0001c0014t0003g0153 a0001c0026t0014g0052 a0001c0029t0003g0107 a0001c0036t0003g0055 a0001c0038t0001g0046 a0001c0039t0006g0001 a0001c0040t0007g0002 a0006c0037t0001g0010	62	183	0.3388	-16	c.239 others(35): Show c.239-17061_239-17046delCGATTCTGTGCCCGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132303625	GCACAGAA others(9): Show GCACAGAATCGCCCAGA	G G	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0149 a0001c0001t0001g0149	1	183	0.0055	-16	c.239 others(35): Show c.239-17211_239-17196delTCTGGGCGATTCTGTG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304374	CGGGCACA others(9): Show CGGGCACACCCTCACCG	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01943.hp1 HG02080.hp1 others(3): Show HG00733.hp2 HG01943.hp1 HG02080.hp1 HG02109.hp2 HG02615.hp1 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0008 a0001c0016 a0001c0017 others(2): Show a0001c0008 a0001c0016 a0001c0017 a0001c0031 a0002c0032	a0001c0008t0002 a0001c0016t0001 a0001c0017t0001 others(2): Show a0001c0008t0002 a0001c0016t0001 a0001c0017t0001 a0001c0031t0001 a0002c0032t0002	a0001c0008t0002g0176 a0001c0016t0001g0054 a0001c0016t0001g0147 others(3): Show a0001c0008t0002g0176 a0001c0016t0001g0054 a0001c0016t0001g0147 a0001c0017t0001g0148 a0001c0031t0001g0038 a0002c0032t0002g0167	6	183	0.0328	-16	c.239 others(35): Show c.239-17960_239-17945delCGGTGAGGGTGTGCCC	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304531	ACCCGGGC others(9): Show ACCCGGGCACAGAATCG	A A	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0002 a0001c0008t0002	a0001c0008t0002g0176 a0001c0008t0002g0176	1	183	0.0055	-16	c.239 others(35): Show c.239-18117_239-18102delCGATTCTGTGCCCGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304590	CCCTCACC others(9): Show CCCTCACCCGGGCACAG	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03209.hp2 HG03453.hp2 HG02055.hp1 HG03209.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0017 a0001c0001 a0001c0017	a0001c0001t0001 a0001c0001t0011 a0001c0017t0001 a0001c0001t0001 a0001c0001t0011 a0001c0017t0001	a0001c0001t0001g0051 a0001c0001t0011g0050 a0001c0017t0001g0049 a0001c0001t0001g0051 a0001c0001t0011g0050 a0001c0017t0001g0049	3	183	0.0164	-16	c.239 others(35): Show c.239-18176_239-18161delCTGTGCCCGGGTGAGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304659	ACCCGGGC others(9): Show ACCCGGGCACAGCCTCG	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02280.hp1 HG02698.hp1 others(9): Show HG01175.hp1 HG02280.hp1 HG02698.hp1 HG02723.hp1 HG02738.hp1 HG02809.hp2 HG02976.hp2 HG03209.hp1 HG03486.hp1 HG03834.hp2 NA18522.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 others(4): Show a0001c0001 a0001c0002 a0001c0006 a0001c0010 a0001c0026 a0001c0039 a0001c0040	a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 a0001c0010t0001 a0001c0026t0014 a0001c0039t0006 a0001c0040t0007	a0001c0001t0001g0059 a0001c0002t0001g0068 a0001c0002t0001g0151 others(9): Show a0001c0001t0001g0059 a0001c0002t0001g0068 a0001c0002t0001g0151 a0001c0006t0001g0078 a0001c0006t0001g0142 a0001c0010t0001g0085 a0001c0010t0001g0086 a0001c0010t0001g0087 a0001c0010t0001g0089 a0001c0026t0014g0052 a0001c0039t0006g0001 a0001c0040t0007g0002	12	183	0.0656	-16	c.239 others(35): Show c.239-18245_239-18230delCGAGGCTGTGCCCGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304739	ACCCAGAC others(9): Show ACCCAGACACAGCCTCG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01943.hp1 HG00733.hp2 HG01943.hp1	a0001 a0002 a0001 a0002	a0001c0031 a0002c0032 a0001c0031 a0002c0032	a0001c0031t0001 a0002c0032t0002 a0001c0031t0001 a0002c0032t0002	a0001c0031t0001g0038 a0002c0032t0002g0167 a0001c0031t0001g0038 a0002c0032t0002g0167	2	183	0.0109	-16	c.239 others(35): Show c.239-18325_239-18310delCGAGGCTGTGTCTGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132304925	ACCCTCAC others(9): Show ACCCTCACCCAGACACG	A A	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01192.hp2 HG01243.hp2 HG01070.hp2 HG01192.hp2 HG01243.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0091 a0001c0003t0001g0092 a0001c0003t0001g0093 a0001c0003t0001g0091 a0001c0003t0001g0092 a0001c0003t0001g0093	3	183	0.0164	-16	c.239 others(35): Show c.239-18511_239-18496delCGTGTCTGGGTGAGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132305341	GCCCTCAC others(9): Show GCCCTCACCCGGGCACA	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp1 others(35): Show HG00140.hp2 HG00280.hp2 HG00408.hp1 HG00609.hp1 HG00673.hp1 HG00673.hp2 HG01109.hp2 HG01243.hp1 HG01346.hp1 HG01361.hp1 HG01981.hp2 HG02040.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02165.hp1 HG02257.hp1 HG02615.hp1 HG02683.hp1 HG02698.hp2 HG02735.hp1 HG03017.hp2 HG03225.hp1 HG03688.hp2 HG06807.hp2 NA18952.hp2 NA18953.hp1 NA18964.hp2 NA18966.hp1 NA18971.hp1 NA18999.hp2 NA19002.hp2 NA19004.hp1 NA19012.hp1 NA19063.hp1 NA19080.hp1 NA20805.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(13): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0011 a0001c0012 a0001c0013 a0001c0015 a0001c0016 a0001c0017 a0001c0018 a0001c0019 a0001c0020 a0001c0022 a0003c0033	a0001c0001t0001 a0001c0001t0008 a0001c0002t0001 others(14): Show a0001c0001t0001 a0001c0001t0008 a0001c0002t0001 a0001c0003t0001 a0001c0004t0001 a0001c0005t0001 a0001c0011t0001 a0001c0012t0002 a0001c0013t0004 a0001c0015t0001 a0001c0016t0001 a0001c0017t0001 a0001c0018t0001 a0001c0019t0003 a0001c0020t0001 a0001c0022t0001 a0003c0033t0001	a0001c0001t0001g0062 a0001c0001t0001g0075 a0001c0001t0001g0111 others(35): Show a0001c0001t0001g0062 a0001c0001t0001g0075 a0001c0001t0001g0111 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0122 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0136 a0001c0001t0008g0003 a0001c0002t0001g0004 a0001c0002t0001g0025 a0001c0002t0001g0130 a0001c0002t0001g0134 a0001c0002t0001g0141 a0001c0003t0001g0123 a0001c0003t0001g0128 a0001c0004t0001g0076 a0001c0004t0001g0106 a0001c0004t0001g0121 a0001c0005t0001g0113 a0001c0011t0001g0116 a0001c0011t0001g0129 a0001c0012t0002g0180 a0001c0012t0002g0181 a0001c0013t0004g0095 a0001c0013t0004g0124 a0001c0015t0001g0067 a0001c0016t0001g0054 a0001c0016t0001g0147 a0001c0017t0001g0148 a0001c0018t0001g0047 a0001c0019t0003g0145 a0001c0020t0001g0115 a0001c0022t0001g0120 a0003c0033t0001g0114	38	183	0.2077	-16	c.239 others(35): Show c.239-18927_239-18912delTGTGCCCGGGTGAGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132305518	GCCTCACC others(9): Show GCCTCACCCGGGCACAC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00408.hp2 others(37): Show HG00140.hp1 HG00280.hp1 HG00408.hp2 HG00609.hp2 HG01106.hp2 HG01175.hp1 HG01346.hp2 HG01433.hp1 HG01928.hp1 HG01928.hp2 HG02027.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp2 HG02148.hp1 HG02165.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02698.hp1 HG02717.hp1 HG02738.hp1 HG02976.hp2 HG03209.hp1 HG03225.hp2 HG03453.hp1 HG03486.hp1 HG03492.hp2 HG03579.hp1 HG03834.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18945.hp2 NA18980.hp2 NA18999.hp1 NA19002.hp1 NA19012.hp2 NA19070.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0011 a0001c0013 a0001c0026 a0001c0029 a0001c0038 a0001c0039 a0001c0040	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(12): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0007t0001 a0001c0007t0010 a0001c0010t0001 a0001c0011t0001 a0001c0013t0004 a0001c0026t0014 a0001c0029t0003 a0001c0038t0001 a0001c0039t0006 a0001c0040t0007	a0001c0001t0001g0011 a0001c0001t0001g0040 a0001c0001t0001g0042 others(37): Show a0001c0001t0001g0011 a0001c0001t0001g0040 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0002t0001g0034 a0001c0002t0001g0058 a0001c0002t0001g0063 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0001g0071 a0001c0002t0001g0100 a0001c0002t0001g0101 a0001c0002t0001g0151 a0001c0002t0001g0152 a0001c0003t0001g0041 a0001c0003t0001g0103 a0001c0003t0001g0137 a0001c0005t0001g0037 a0001c0005t0001g0088 a0001c0006t0001g0073 a0001c0007t0001g0104 a0001c0007t0010g0108 a0001c0010t0001g0085 a0001c0010t0001g0086 a0001c0010t0001g0087 a0001c0010t0001g0089 a0001c0011t0001g0057 a0001c0011t0001g0065 a0001c0013t0004g0036 a0001c0026t0014g0052 a0001c0029t0003g0107 a0001c0038t0001g0046 a0001c0039t0006g0001 a0001c0040t0007g0002	40	183	0.2186	-16	c.239 others(35): Show c.239-19104_239-19089delGTGTGCCCGGGTGAGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNTL5_chr7_151951446_152024929	151956137	AAAATAAA others(9): Show AAAATAAATAAATAAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18953.hp1 NA18953.hp2 NA18955.hp1 others(1): Show NA18953.hp1 NA18953.hp2 NA18955.hp1 NA19000.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0004 a0001c0001 a0003c0003 a0004c0004	a0001c0001t0002 a0003c0003t0001 a0004c0004t0002 a0001c0001t0002 a0003c0003t0001 a0004c0004t0002	a0001c0001t0002g0155 a0003c0003t0001g0204 a0003c0003t0001g0245 others(1): Show a0001c0001t0002g0155 a0003c0003t0001g0204 a0003c0003t0001g0245 a0004c0004t0002g0121	4	384	0.0104	-16	c.-51 others(25): Show c.-511_-496delAAATAAATAAATAAAT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding		308		chr7	TogoVar
GALNTL5_chr7_151951446_152024929	151971124	TAGATAGA others(9): Show TAGATAGATAGATAGAA	T T	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0002 a0005c0005t0002	a0005c0005t0002g0129 a0005c0005t0002g0129	1	384	0.0026	-16	c.368 others(29): Show c.368+63_368+78delTAGATAGATAGAAAGA	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNTL5_chr7_151951446_152024929	151981575	TTCCTTCC others(9): Show TTCCTTCCTTCCTTCCC	T T	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02559.hp2 HG03491.hp1 others(7): Show HG02056.hp1 HG02559.hp2 HG03491.hp1 HG03516.hp1 HG03834.hp1 HG04184.hp1 HG04228.hp2 NA18955.hp1 NA18983.hp1 NA20905.hp2	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0006 a0001c0001 a0003c0003 a0006c0006	a0001c0001t0001 a0001c0001t0002 a0003c0003t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0003c0003t0001 a0003c0003t0002 a0006c0006t0002	a0001c0001t0001g0079 a0001c0001t0001g0359 a0001c0001t0002g0155 others(7): Show a0001c0001t0001g0079 a0001c0001t0001g0359 a0001c0001t0002g0155 a0003c0003t0001g0060 a0003c0003t0001g0233 a0003c0003t0001g0244 a0003c0003t0001g0334 a0003c0003t0002g0167 a0003c0003t0002g0310 a0006c0006t0002g0130	10	384	0.0260	-16	c.369 others(33): Show c.369-1379_369-1364delCTCCTTCCTTCCTTCC	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNTL5_chr7_151951446_152024929	151993495	ACGATTTT others(9): Show ACGATTTTCAGAGATTT	A A	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0046	1	384	0.0026	-16	c.658 others(33): Show c.658+6215_658+6230delCGATTTTCAGAGATTT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	5/8			chr7	TogoVar
GALNTL5_chr7_151951446_152024929	151995348	ATTTTTTT others(9): Show ATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02258.hp1 HG02622.hp2 others(4): Show HG01169.hp2 HG02258.hp1 HG02622.hp2 HG02723.hp2 NA18994.hp1 NA18994.hp2 NA19060.hp1	a0001 a0004 a0007 a0001 a0004 a0007	a0001c0001 a0004c0004 a0007c0007 a0001c0001 a0004c0004 a0007c0007	a0001c0001t0001 a0004c0004t0002 a0007c0007t0001 others(1): Show a0001c0001t0001 a0004c0004t0002 a0007c0007t0001 a0007c0007t0003	a0001c0001t0001g0046 a0001c0001t0001g0082 a0004c0004t0002g0137 others(4): Show a0001c0001t0001g0046 a0001c0001t0001g0082 a0004c0004t0002g0137 a0007c0007t0001g0218 a0007c0007t0003g0340 a0007c0007t0003g0341 a0007c0007t0003g0343	7	384	0.0182	-16	c.659 others(33): Show c.659-7339_659-7324delTTTTTTTTTTTTTTTT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNTL6_chr4_171808404_173046559	172034395	CGTGCGTG others(9): Show CGTGCGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp2 NA18906.hp2 HG02258.hp1 HG02630.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0001t0001 a0001c0001t0002 a0001c0001t0011	a0001c0001t0001g0014 a0001c0001t0002g0003 a0001c0001t0011g0031 a0001c0001t0001g0014 a0001c0001t0002g0003 a0001c0001t0011g0031	3	40	0.0750	-16	c.139 others(37): Show c.139-195257_139-195242delCGTGTGTGTGTGTGTG	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar

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