Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GLIS3_chr9_3819127_4305068	3951870	ACACACAC others(9): Show ACACACACACACACACG	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0089 a0001c0001t0057g0089	1	188	0.0053	-16	c.171 others(37): Show c.1711-14697_1711-14682delCGTGTGTGTGTGTGTG	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	3953760	GCTCTCTC others(9): Show GCTCTCTCTCTCTCTCT	G G	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02809.hp2 HG02280.hp2 HG02809.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0015 a0002c0002t0042 a0002c0002t0015 a0002c0002t0042	a0002c0002t0015g0039 a0002c0002t0042g0073 a0002c0002t0015g0039 a0002c0002t0042g0073	2	188	0.0106	-16	c.171 others(37): Show c.1711-16587_1711-16572delAGAGAGAGAGAGAGAG	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	3976795	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02258.hp1 HG03225.hp1 HG00741.hp2 HG02258.hp1 HG03225.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0009 a0001c0001 a0002c0002 a0006c0009	a0001c0001t0009 a0002c0002t0020 a0006c0009t0004 a0001c0001t0009 a0002c0002t0020 a0006c0009t0004	a0001c0001t0009g0003 a0002c0002t0020g0029 a0006c0009t0004g0028 a0001c0001t0009g0003 a0002c0002t0020g0029 a0006c0009t0004g0028	3	188	0.0160	-16	c.171 others(37): Show c.1711-39622_1711-39607delTTTTTTTTTTTTTTTT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	4/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4173561	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02965.hp2 NA18906.hp2 HG02965.hp2 NA18906.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0009 a0001c0001 a0006c0009	a0001c0001t0011 a0006c0009t0034 a0001c0001t0011 a0006c0009t0034	a0001c0001t0011g0043 a0006c0009t0034g0005 a0001c0001t0011g0043 a0006c0009t0034g0005	2	188	0.0106	-16	c.389 others(35): Show c.389-47636_389-47621delGTGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4270888	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01081.hp1 HG01106.hp2 others(16): Show HG00438.hp1 HG01081.hp1 HG01106.hp2 HG01346.hp2 HG02027.hp2 HG02559.hp2 HG02572.hp1 HG02622.hp1 HG02895.hp2 HG02896.hp1 HG03130.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03688.hp2 HG04184.hp1 NA18906.hp2 NA19240.hp1 NA19240.hp2	a0001 a0002 a0007 others(4): Show a0001 a0002 a0007 a0014 a0015 a0020 a0021	a0001c0001 a0002c0002 a0007c0007 others(4): Show a0001c0001 a0002c0002 a0007c0007 a0014c0026 a0015c0024 a0020c0018 a0021c0016	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(14): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0011 a0001c0001t0012 a0001c0001t0043 a0001c0001t0049 a0001c0001t0068 a0001c0001t0081 a0001c0001t0086 a0002c0002t0033 a0002c0002t0084 a0007c0007t0006 a0014c0026t0022 a0015c0024t0061 a0020c0018t0019 a0021c0016t0014	a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0004g0020 others(16): Show a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0004g0020 a0001c0001t0006g0083 a0001c0001t0006g0084 a0001c0001t0011g0043 a0001c0001t0012g0046 a0001c0001t0043g0064 a0001c0001t0049g0026 a0001c0001t0068g0098 a0001c0001t0081g0103 a0001c0001t0086g0184 a0002c0002t0033g0011 a0002c0002t0084g0099 a0007c0007t0006g0019 a0014c0026t0022g0036 a0015c0024t0061g0085 a0020c0018t0019g0048 a0021c0016t0014g0094	19	188	0.1011	-16	c.388 others(35): Show c.388+15134_388+15149delACACACACACACACAC	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4270919	GTGTGTGT others(9): Show GTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0015 a0008c0008t0015	a0008c0008t0015g0062 a0008c0008t0015g0062	1	188	0.0053	-16	c.388 others(35): Show c.388+15103_388+15118delTACACACACACACACA	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLIS3_chr9_3819127_4305068	4279348	CACACACA others(9): Show CACACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00741.hp2 HG01243.hp2 others(8): Show HG00438.hp2 HG00741.hp2 HG01243.hp2 HG02818.hp2 HG02886.hp2 HG02922.hp2 HG02965.hp2 HG03239.hp1 HG03516.hp1 NA18992.hp1 NA19011.hp1	a0001 a0004 a0005 others(1): Show a0001 a0004 a0005 a0006	a0001c0001 a0004c0003 a0005c0005 others(1): Show a0001c0001 a0004c0003 a0005c0005 a0006c0009	a0001c0001t0009 a0001c0001t0017 a0001c0001t0048 others(7): Show a0001c0001t0009 a0001c0001t0017 a0001c0001t0048 a0001c0001t0049 a0001c0001t0077 a0001c0001t0079 a0004c0003t0002 a0005c0005t0007 a0005c0005t0035 a0006c0009t0034	a0001c0001t0009g0002 a0001c0001t0009g0003 a0001c0001t0017g0071 others(8): Show a0001c0001t0009g0002 a0001c0001t0009g0003 a0001c0001t0017g0071 a0001c0001t0048g0025 a0001c0001t0049g0026 a0001c0001t0077g0120 a0001c0001t0079g0136 a0004c0003t0002g0117 a0005c0005t0007g0033 a0005c0005t0035g0004 a0006c0009t0034g0005	11	188	0.0585	-16	c.388 others(33): Show c.388+6674_388+6689delATGTGTGTGTGTGTGT	GLIS3	ENSG00000107249.24	transcript	ENST00000381971.8	protein_coding	2/10			chr9	TogoVar
GLMP_chr1_156287688_156300679	156292376	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp1 HG02055.hp2 HG02717.hp1 others(5): Show HG01433.hp1 HG02055.hp2 HG02717.hp1 HG02922.hp1 HG02922.hp2 HG03041.hp1 NA18973.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	8	396	0.0202	-16	c.65 others(25): Show c.652_*667delACACACACACACACAC	GLMP	ENSG00000198715.13	transcript	ENST00000362007.6	protein_coding		311		chr1	TogoVar
GLO1_chr6_38670925_38708145	38678312	GAAAGAGA others(9): Show GAAAGAGAGAAAGAGAA	G G	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02818.hp2 HG02965.hp2 others(1): Show HG02809.hp2 HG02818.hp2 HG02965.hp2 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0035 a0001c0003t0001g0256 a0001c0003t0001g0257 a0001c0001t0001g0035 a0001c0003t0001g0256 a0001c0003t0001g0257	4	410	0.0098	-16	c.467 others(31): Show c.467-945_467-930delTTCTCTTTCTCTCTTT	GLO1	ENSG00000124767.7	transcript	ENST00000373365.5	protein_coding	5/5			chr6	TogoVar
GLO1_chr6_38670925_38708145	38705299	CCTTTCTT others(9): Show CCTTTCTTTCTTTCTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG02559.hp2 HG01891.hp2 HG02559.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0007 a0002c0002t0002g0007	2	410	0.0049	-16	c.-22 others(27): Show c.-2261_-2246delAAAGAAAGAAAGAAAG	GLO1	ENSG00000124767.7	transcript	ENST00000373365.5	protein_coding		2155		chr6	TogoVar
GLO1_chr6_38670925_38708145	38707657	GAAGAAAG others(9): Show GAAGAAAGAGAGAGAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG01175.hp2 HG02015.hp2 others(9): Show HG01168.hp2 HG01175.hp2 HG02015.hp2 HG02040.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02155.hp1 NA18970.hp1 NA19055.hp2 NA19057.hp1 NA19078.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0002c0002t0017 a0001c0001t0001 a0002c0002t0001 a0002c0002t0017	a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0038 others(6): Show a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0159 a0001c0001t0001g0165 a0002c0002t0001g0177 a0002c0002t0001g0178 a0002c0002t0001g0180 a0002c0002t0017g0186	12	410	0.0293	-16	c.-46 others(27): Show c.-4619_-4604delTCTCTCTCTCTTTCTT	GLO1	ENSG00000124767.7	transcript	ENST00000373365.5	protein_coding		4513		chr6	TogoVar
GLO1_chr6_38670925_38708145	38707703	GGAAAGAA others(9): Show GGAAAGAAAGAAAGAAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01361.hp1 HG02698.hp1 HG06807.hp1 HG01361.hp1 HG02698.hp1 HG06807.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0064 a0002c0002t0002g0065 a0002c0002t0002g0146 a0002c0002t0002g0064 a0002c0002t0002g0065 a0002c0002t0002g0146	3	410	0.0073	-16	c.-46 others(27): Show c.-4665_-4650delTTTCTTTCTTTCTTTC	GLO1	ENSG00000124767.7	transcript	ENST00000373365.5	protein_coding		4559		chr6	TogoVar
GLP2R_chr17_9820924_9897099	9844668	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02630.hp2 HG02723.hp1 others(2): Show HG02615.hp2 HG02630.hp2 HG02723.hp1 HG02976.hp1 HG03579.hp1	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0001c0006 a0003c0004 others(1): Show a0001c0001 a0001c0006 a0003c0004 a0007c0011	a0001c0001t0001 a0001c0006t0001 a0003c0004t0001 others(1): Show a0001c0001t0001 a0001c0006t0001 a0003c0004t0001 a0007c0011t0001	a0001c0001t0001g0027 a0001c0006t0001g0016 a0003c0004t0001g0319 others(2): Show a0001c0001t0001g0027 a0001c0006t0001g0016 a0003c0004t0001g0319 a0007c0011t0001g0317 a0007c0011t0001g0318	5	380	0.0132	-16	c.504 others(33): Show c.504+2075_504+2090delTTTTTTTTTTTTTTTT	GLP2R	ENSG00000065325.13	transcript	ENST00000262441.10	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr17	TogoVar
GLRA1_chr5_151817513_151929851	151893283	ACTTTCTT others(9): Show ACTTTCTTTCTTTCTTT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01074.hp2 HG01081.hp2 others(3): Show HG00735.hp2 HG01074.hp2 HG01081.hp2 HG02896.hp2 HG06807.hp2 NA19088.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0002c0003t0001	a0001c0001t0001g0026 a0001c0001t0001g0043 a0001c0001t0001g0110 others(3): Show a0001c0001t0001g0026 a0001c0001t0001g0043 a0001c0001t0001g0110 a0001c0001t0002g0199 a0001c0002t0001g0141 a0002c0003t0001g0023	6	284	0.0211	-16	c.57- others(29): Show c.57-861_57-846delAAAGAAAGAAAGAAAG	GLRA1	ENSG00000145888.11	transcript	ENST00000274576.9	protein_coding	1/8			chr5	TogoVar
GLRA2_chrX_14524536_14736812	14581766	GCACACAC others(9): Show GCACACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02145.hp1 HG02257.hp1 others(6): Show HG01243.hp1 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02809.hp1 HG02895.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 others(5): Show a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0013 a0001c0001t0049 a0001c0002t0028 a0001c0002t0036	a0001c0001t0004g0069 a0001c0001t0007g0079 a0001c0001t0009g0064 others(6): Show a0001c0001t0004g0069 a0001c0001t0007g0079 a0001c0001t0009g0064 a0001c0001t0010g0070 a0001c0001t0010g0074 a0001c0001t0013g0073 a0001c0001t0049g0075 a0001c0002t0028g0062 a0001c0002t0036g0063	9	232	0.0388	-16	c.494 others(31): Show c.494+385_494+400delCACACACACACACACA	GLRA2	ENSG00000101958.14	transcript	ENST00000218075.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chrX	TogoVar
GLRA2_chrX_14524536_14736812	14604543	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0147 a0001c0001t0001g0147	1	232	0.0043	-16	c.577 others(31): Show c.577+181_577+196delGTGTGTGTGTGTGTGT	GLRA2	ENSG00000101958.14	transcript	ENST00000218075.9	protein_coding	5/8		INFO_REALIGN_3_PRIME	chrX	TogoVar
GLRA2_chrX_14524536_14736812	14691271	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01516.hp1 HG01517.hp2 others(5): Show HG01074.hp1 HG01516.hp1 HG01517.hp2 HG01891.hp2 HG02293.hp2 HG02615.hp1 HG02622.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0005 a0001c0002t0046 a0001c0003t0007 others(2): Show a0001c0002t0005 a0001c0002t0046 a0001c0003t0007 a0001c0003t0026 a0001c0003t0027	a0001c0002t0005g0213 a0001c0002t0005g0215 a0001c0002t0046g0179 others(5): Show a0001c0002t0005g0213 a0001c0002t0005g0215 a0001c0002t0046g0179 a0001c0003t0007g0067 a0001c0003t0026g0176 a0001c0003t0026g0180 a0001c0003t0027g0178 a0001c0003t0027g0182	8	232	0.0345	-16	c.108 others(33): Show c.1080+451_1080+466delTGTGTGTGTGTGTGTG	GLRA2	ENSG00000101958.14	transcript	ENST00000218075.9	protein_coding	8/8		INFO_REALIGN_3_PRIME	chrX	TogoVar
GLRA2_chrX_14524536_14736812	14691310	TGTGTGTG others(9): Show TGTGTGTGTGTGTGTGC	T T	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	232	0.0043	-16	c.108 others(33): Show c.1080+453_1080+468delTGTGTGTGTGTGTGCG	GLRA2	ENSG00000101958.14	transcript	ENST00000218075.9	protein_coding	8/8		INFO_REALIGN_3_PRIME	chrX	TogoVar
GLRA2_chrX_14524536_14736812	14730891	TACACACA others(9): Show TACACACACACACACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02451.hp1 HG02572.hp1 HG02630.hp2 others(15): Show HG02451.hp1 HG02572.hp1 HG02630.hp2 HG02683.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02970.hp2 HG03453.hp2 HG03654.hp1 HG04204.hp1 NA18906.hp1 NA18944.hp1 NA18962.hp1 NA19030.hp2 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0008 a0001c0001t0021 a0001c0001t0031 others(4): Show a0001c0001t0008 a0001c0001t0021 a0001c0001t0031 a0001c0002t0021 a0001c0002t0043 a0001c0003t0025 a0001c0003t0030	a0001c0001t0008g0007 a0001c0001t0008g0009 a0001c0001t0008g0128 others(15): Show a0001c0001t0008g0007 a0001c0001t0008g0009 a0001c0001t0008g0128 a0001c0001t0008g0140 a0001c0001t0008g0141 a0001c0001t0008g0195 a0001c0001t0008g0196 a0001c0001t0008g0201 a0001c0001t0008g0227 a0001c0001t0008g0230 a0001c0001t0008g0231 a0001c0001t0021g0190 a0001c0001t0031g0060 a0001c0002t0021g0024 a0001c0002t0043g0191 a0001c0003t0025g0175 a0001c0003t0025g0181 a0001c0003t0030g0198	18	232	0.0776	-16	c.45 others(25): Show c.450_*465delCACACACACACACACA	GLRA2	ENSG00000101958.14	transcript	ENST00000218075.9	protein_coding	9/9	450	INFO_REALIGN_3_PRIME	chrX	TogoVar
GLRA3_chr4_174631920_174834247	174639397	TGTGTGTG others(9): Show TGTGTGTGTGTGTGAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01255.hp2 HG01346.hp2 HG01928.hp2 others(4): Show HG01255.hp2 HG01346.hp2 HG01928.hp2 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG02293.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0003c0012 a0001c0001 a0001c0003 a0003c0012	a0001c0001t0006 a0001c0001t0068 a0001c0003t0006 others(1): Show a0001c0001t0006 a0001c0001t0068 a0001c0003t0006 a0003c0012t0006	a0001c0001t0006g0291 a0001c0001t0068g0067 a0001c0003t0006g0016 others(4): Show a0001c0001t0006g0291 a0001c0001t0068g0067 a0001c0003t0006g0016 a0001c0003t0006g0113 a0001c0003t0006g0114 a0001c0003t0006g0115 a0003c0012t0006g0126	7	296	0.0237	-16	c.43 others(27): Show c.4373_*4388delTTTCACACACACACAC	GLRA3	ENSG00000145451.13	transcript	ENST00000274093.8	protein_coding	10/10	4373		chr4	TogoVar
GLRA3_chr4_174631920_174834247	174688317	TCATATAT others(9): Show TCATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03942.hp2 NA18943.hp1 others(2): Show HG03239.hp2 HG03942.hp2 NA18943.hp1 NA20752.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0003 a0001c0002t0004 a0001c0001t0001 a0001c0002t0003 a0001c0002t0004	a0001c0001t0001g0269 a0001c0002t0003g0164 a0001c0002t0003g0200 others(2): Show a0001c0001t0001g0269 a0001c0002t0003g0164 a0001c0002t0003g0200 a0001c0002t0004g0064 a0001c0002t0004g0160	5	296	0.0169	-16	c.575 others(33): Show c.575-5394_575-5379delTATATATATATATATG	GLRA3	ENSG00000145451.13	transcript	ENST00000274093.8	protein_coding	5/9			chr4	TogoVar
GLRA3_chr4_174631920_174834247	174688318	CATATATA others(9): Show CATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03098.hp2 HG02280.hp1 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0079 a0001c0001t0094 a0001c0001t0079 a0001c0001t0094	a0001c0001t0079g0108 a0001c0001t0094g0244 a0001c0001t0079g0108 a0001c0001t0094g0244	2	296	0.0068	-16	c.575 others(33): Show c.575-5395_575-5380delATATATATATATATAT	GLRA3	ENSG00000145451.13	transcript	ENST00000274093.8	protein_coding	5/9			chr4	TogoVar
GLRA3_chr4_174631920_174834247	174721007	TTGTGTGT others(9): Show TTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01433.hp2 HG01891.hp2 others(11): Show HG00741.hp1 HG01433.hp2 HG01891.hp2 HG02258.hp1 HG02622.hp2 HG02717.hp1 HG02723.hp1 HG02965.hp1 HG03041.hp2 HG03209.hp1 HG03486.hp1 HG03516.hp1 HG03516.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006	a0001c0001t0012 a0001c0002t0008 a0001c0003t0008 others(8): Show a0001c0001t0012 a0001c0002t0008 a0001c0003t0008 a0001c0003t0012 a0001c0003t0034 a0001c0003t0075 a0001c0003t0090 a0001c0005t0007 a0001c0006t0007 a0001c0006t0080 a0001c0006t0081	a0001c0001t0012g0199 a0001c0002t0008g0248 a0001c0003t0008g0044 others(11): Show a0001c0001t0012g0199 a0001c0002t0008g0248 a0001c0003t0008g0044 a0001c0003t0012g0045 a0001c0003t0012g0046 a0001c0003t0012g0048 a0001c0003t0034g0049 a0001c0003t0034g0179 a0001c0003t0075g0051 a0001c0003t0090g0050 a0001c0005t0007g0180 a0001c0006t0007g0118 a0001c0006t0080g0182 a0001c0006t0081g0121	14	296	0.0473	-16	c.492 others(33): Show c.492-5453_492-5438delCACACACACACACACA	GLRA3	ENSG00000145451.13	transcript	ENST00000274093.8	protein_coding	4/9			chr4	TogoVar
GLRA3_chr4_174631920_174834247	174793419	CATTCATT others(9): Show CATTCATTTATTTATTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01071.hp1 HG03927.hp1 HG00639.hp2 HG01071.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0003t0028 a0001c0003t0073 a0001c0001t0003 a0001c0003t0028 a0001c0003t0073	a0001c0001t0003g0171 a0001c0003t0028g0150 a0001c0003t0073g0172 a0001c0001t0003g0171 a0001c0003t0028g0150 a0001c0003t0073g0172	3	296	0.0101	-16	c.72- others(31): Show c.72-4492_72-4477delAAATAAATAAATGAAT	GLRA3	ENSG00000145451.13	transcript	ENST00000274093.8	protein_coding	1/9			chr4	TogoVar
GLRX3_chr10_130131391_130184672	130136105	TAGCCAGG others(9): Show TAGCCAGGAGCCCCTAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG00738.hp2 HG01358.hp1 others(25): Show HG00642.hp2 HG00738.hp2 HG01358.hp1 HG01928.hp1 HG01981.hp2 HG02145.hp2 HG02559.hp2 HG02738.hp2 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG03139.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03490.hp2 HG03516.hp1 HG03540.hp1 HG04228.hp2 HG06807.hp1 NA18906.hp1 NA19030.hp2 NA19043.hp1 NA19240.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0333 a0001c0001t0001g0334 others(24): Show a0001c0001t0001g0032 a0001c0001t0001g0333 a0001c0001t0001g0334 a0001c0001t0001g0360 a0001c0001t0001g0361 a0001c0001t0001g0362 a0001c0001t0001g0363 a0001c0001t0001g0364 a0001c0001t0001g0365 a0001c0001t0001g0366 a0001c0001t0001g0367 a0001c0001t0001g0368 a0001c0001t0001g0369 a0001c0001t0001g0370 a0001c0001t0001g0371 a0001c0001t0001g0372 a0001c0001t0001g0373 a0001c0001t0001g0374 a0001c0001t0001g0375 a0001c0001t0001g0376 a0001c0001t0001g0377 a0001c0001t0001g0378 a0001c0001t0001g0379 a0001c0001t0001g0380 a0001c0001t0001g0382 a0001c0001t0001g0383 a0001c0001t0001g0384	28	424	0.0660	-16	c.-31 others(25): Show c.-315_-300delAGCCAGGAGCCCCTAC	GLRX3	ENSG00000108010.12	transcript	ENST00000331244.10	protein_coding		285		chr10	TogoVar
GLRX3_chr10_130131391_130184672	130148433	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01099.hp2 HG02630.hp1 others(1): Show HG00733.hp2 HG01099.hp2 HG02630.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0132 others(1): Show a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0001g0195	4	424	0.0094	-16	c.201 others(33): Show c.201+3126_201+3141delTTTTTTTTTTTTTTTT	GLRX3	ENSG00000108010.12	transcript	ENST00000331244.10	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
GLRX3_chr10_130131391_130184672	130176732	TCTTCCCT others(9): Show TCTTCCCTCCCTCCCTC	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	424	0.0024	-16	c.957 others(33): Show c.957+1661_957+1676delTTCCCTCCCTCCCTCC	GLRX3	ENSG00000108010.12	transcript	ENST00000331244.10	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
GLS_chr2_190875821_190970552	190953950	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02622.hp1 HG03540.hp1 others(2): Show HG02109.hp2 HG02622.hp1 HG03540.hp1 NA18980.hp2 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0028 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0028 a0001c0001t0050	a0001c0001t0001g0268 a0001c0001t0004g0212 a0001c0001t0028g0343 others(2): Show a0001c0001t0001g0268 a0001c0001t0004g0212 a0001c0001t0028g0343 a0001c0001t0028g0344 a0001c0001t0050g0121	5	380	0.0132	-16	c.171 others(33): Show c.1712+355_1712+370delTGTGTGTGTGTGTGTG	GLS	ENSG00000115419.14	transcript	ENST00000320717.8	protein_coding	15/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
GLS_chr2_190875821_190970552	190966559	CATATATA others(9): Show CATATATATATATATAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0246 a0001c0001t0014g0246	1	380	0.0026	-16	c.35 others(27): Show c.3574_*3589delATATATATATATATAT	GLS	ENSG00000115419.14	transcript	ENST00000320717.8	protein_coding		1008		chr2	TogoVar
GLT1D1_chr12_128848478_128989968	128849622	TCTTCTTA others(9): Show TCTTCTTACTTTTATTA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00323.hp1 others(47): Show HG00099.hp2 HG00140.hp1 HG00323.hp1 HG00323.hp2 HG00639.hp2 HG01069.hp2 HG01071.hp2 HG01081.hp2 HG01109.hp1 HG01243.hp1 HG01261.hp1 HG01346.hp1 HG01433.hp2 HG01496.hp2 HG01981.hp1 HG02004.hp2 HG02074.hp1 HG02135.hp2 HG02258.hp2 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02738.hp1 HG02897.hp2 HG02976.hp2 HG03130.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp1 HG03540.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04228.hp2 NA18747.hp1 NA18747.hp2 NA19030.hp2 NA19056.hp2 NA20752.hp1 NA20805.hp1 NA20805.hp2 NA20905.hp1	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0009c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0004t0013 a0002c0003t0001 a0002c0003t0002 a0002c0003t0004 a0009c0013t0004	a0001c0001t0001g0170 a0001c0001t0001g0262 a0001c0001t0001g0274 others(47): Show a0001c0001t0001g0170 a0001c0001t0001g0262 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0285 a0001c0001t0001g0290 a0001c0001t0001g0292 a0001c0001t0001g0295 a0001c0001t0001g0297 a0001c0001t0001g0299 a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0002g0267 a0001c0001t0002g0278 a0001c0001t0002g0279 a0001c0001t0002g0284 a0001c0001t0002g0287 a0001c0001t0002g0288 a0001c0001t0002g0289 a0001c0001t0002g0298 a0001c0001t0002g0300 a0001c0001t0003g0266 a0001c0001t0003g0273 a0001c0001t0003g0291 a0001c0001t0003g0293 a0001c0001t0003g0294 a0001c0001t0003g0306 a0001c0001t0003g0308 a0001c0001t0003g0309 a0001c0001t0010g0303 a0001c0001t0010g0307 a0001c0002t0001g0296 a0001c0002t0001g0304 a0001c0002t0001g0305 a0001c0002t0001g0310 a0001c0002t0001g0311 a0001c0002t0001g0313 a0001c0002t0002g0265 a0001c0002t0003g0271 a0001c0004t0013g0270 a0002c0003t0001g0269 a0002c0003t0002g0268 a0002c0003t0004g0286 a0009c0013t0004g0312	50	320	0.1563	-16	c.-39 others(27): Show c.-3959_-3944delCTTCTTACTTTTATTA	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding		3855		chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128874059	CCTTTCTT others(9): Show CCTTTCTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0075 a0001c0002t0001g0075	1	320	0.0031	-16	c.69- others(31): Show c.69-1828_69-1813delTTCTTTCTTTCTTTCT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128874086	TTCTTTCT others(9): Show TTCTTTCTTTCTTTCTC	T T	intron_variant intron_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	320	0.0031	-16	c.69- others(31): Show c.69-1824_69-1809delTTCTTTCTTTCTCTCT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128874090	TTCTTTCT others(9): Show TTCTTTCTTTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG02602.hp2 HG03927.hp1 HG01175.hp1 HG02602.hp2 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0001 a0001c0001t0002 a0001c0001t0009	a0001c0001t0001g0275 a0001c0001t0002g0037 a0001c0001t0009g0056 a0001c0001t0001g0275 a0001c0001t0002g0037 a0001c0001t0009g0056	3	320	0.0094	-16	c.69- others(31): Show c.69-1820_69-1805delTTCTTTCTCTCTCTCT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128874098	TTCTCTCT others(9): Show TTCTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0057 a0001c0002t0007g0057	1	320	0.0031	-16	c.69- others(31): Show c.69-1802_69-1787delCTCTCTCTCTCTCTCT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128874124	CTCTTTCT others(9): Show CTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG03017.hp1 NA19054.hp2 HG03017.hp1 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0234 a0001c0002t0002g0206 a0001c0001t0001g0234 a0001c0002t0002g0206	2	320	0.0063	-16	c.69- others(31): Show c.69-1752_69-1737delCTTTCTTTCTTTCTTT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128879378	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02602.hp1 NA18951.hp2 NA19043.hp2 HG02602.hp1 NA18951.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0082 a0001c0001t0001g0280 a0001c0001t0002g0009 a0001c0001t0001g0082 a0001c0001t0001g0280 a0001c0001t0002g0009	3	320	0.0094	-16	c.217 others(33): Show c.217+3384_217+3399delCTTTCTTTCTTTCTTT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128881534	GAAAAAAA others(9): Show GAAAAAAAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0230 a0001c0002t0003g0230	1	320	0.0031	-16	c.217 others(33): Show c.217+5485_217+5500delAAAAAAAAAAAAAAAA	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128881547	AAAAAAAA others(9): Show AAAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0012 a0001c0001t0019g0012	1	320	0.0031	-16	c.217 others(33): Show c.217+5487_217+5502delAAAAAAAAAAAAAATA	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128881549	AAAAAAAA others(9): Show AAAAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01099.hp2 HG03927.hp2 others(1): Show HG00099.hp1 HG01099.hp2 HG03927.hp2 HG04204.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0006 a0001c0002t0001 a0001c0002t0006	a0001c0002t0001g0066 a0001c0002t0001g0117 a0001c0002t0001g0233 others(1): Show a0001c0002t0001g0066 a0001c0002t0001g0117 a0001c0002t0001g0233 a0001c0002t0006g0058	4	320	0.0125	-16	c.217 others(33): Show c.217+5489_217+5504delAAAAAAAAAAAATATA	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128881551	AAAAAAAA others(9): Show AAAAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01928.hp1 HG01167.hp2 HG01928.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0003 a0001c0002t0001 a0001c0002t0003	a0001c0002t0001g0051 a0001c0002t0003g0121 a0001c0002t0001g0051 a0001c0002t0003g0121	2	320	0.0063	-16	c.217 others(33): Show c.217+5491_217+5506delAAAAAAAAAATATATA	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128904623	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(118): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00408.hp1 HG00544.hp1 HG00558.hp1 HG00609.hp2 HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01081.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp2 HG01167.hp2 HG01192.hp1 HG01256.hp1 HG01258.hp2 HG01346.hp1 HG01433.hp1 HG01496.hp1 HG01516.hp1 HG01928.hp1 HG01928.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02027.hp2 HG02055.hp1 HG02056.hp1 HG02056.hp2 HG02071.hp2 HG02074.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02145.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02280.hp1 HG02523.hp2 HG02602.hp2 HG02615.hp2 HG02683.hp1 HG02698.hp2 HG03098.hp2 HG03139.hp1 HG03239.hp2 HG03490.hp2 HG03491.hp1 HG03540.hp1 HG03540.hp2 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04115.hp2 HG04199.hp2 HG04204.hp1 HG04204.hp2 NA18612.hp1 NA18612.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18948.hp2 NA18949.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18965.hp1 NA18968.hp2 NA18970.hp2 NA18973.hp1 NA18977.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp1 NA18984.hp1 NA18984.hp2 NA18989.hp1 NA18994.hp1 NA18999.hp1 NA19000.hp1 NA19000.hp2 NA19004.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19011.hp2 NA19058.hp1 NA19063.hp1 NA19068.hp2 NA19070.hp1 NA19079.hp1 NA19079.hp2 NA19084.hp2 NA19088.hp1 NA20129.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0010	a0001c0001 a0001c0002 a0001c0004 others(5): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0002c0003 a0002c0007 a0004c0010 a0010c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(24): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0014 a0001c0001t0016 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0012 a0001c0004t0001 a0001c0004t0005 a0001c0006t0001 a0001c0006t0005 a0002c0003t0008 a0002c0007t0001 a0002c0007t0002 a0002c0007t0005 a0004c0010t0001 a0010c0012t0001	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 others(118): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0210 a0001c0001t0001g0216 a0001c0001t0001g0229 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0247 a0001c0001t0001g0256 a0001c0001t0001g0290 a0001c0001t0001g0292 a0001c0001t0002g0185 a0001c0001t0002g0190 a0001c0001t0002g0201 a0001c0001t0002g0219 a0001c0001t0002g0235 a0001c0001t0002g0246 a0001c0001t0002g0248 a0001c0001t0002g0251 a0001c0001t0002g0254 a0001c0001t0002g0279 a0001c0001t0002g0289 a0001c0001t0002g0298 a0001c0001t0003g0202 a0001c0001t0003g0205 a0001c0001t0003g0215 a0001c0001t0003g0218 a0001c0001t0003g0253 a0001c0001t0003g0257 a0001c0001t0003g0258 a0001c0001t0003g0273 a0001c0001t0003g0309 a0001c0001t0004g0236 a0001c0001t0005g0096 a0001c0001t0005g0204 a0001c0001t0006g0100 a0001c0001t0006g0182 a0001c0001t0006g0199 a0001c0001t0008g0211 a0001c0001t0009g0056 a0001c0001t0014g0195 a0001c0001t0016g0243 a0001c0001t0018g0259 a0001c0002t0001g0026 a0001c0002t0001g0027 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0051 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0066 a0001c0002t0001g0104 a0001c0002t0001g0108 a0001c0002t0001g0114 a0001c0002t0001g0117 a0001c0002t0001g0119 a0001c0002t0001g0120 a0001c0002t0001g0122 a0001c0002t0001g0125 a0001c0002t0001g0128 a0001c0002t0001g0129 a0001c0002t0001g0130 a0001c0002t0001g0131 a0001c0002t0001g0132 a0001c0002t0001g0135 a0001c0002t0001g0136 a0001c0002t0001g0140 a0001c0002t0001g0141 a0001c0002t0001g0142 a0001c0002t0001g0233 a0001c0002t0001g0272 a0001c0002t0001g0305 a0001c0002t0001g0319 a0001c0002t0002g0025 a0001c0002t0002g0050 a0001c0002t0002g0068 a0001c0002t0002g0078 a0001c0002t0002g0115 a0001c0002t0002g0118 a0001c0002t0002g0150 a0001c0002t0002g0151 a0001c0002t0002g0237 a0001c0002t0002g0265 a0001c0002t0003g0113 a0001c0002t0003g0121 a0001c0002t0003g0230 a0001c0002t0003g0271 a0001c0002t0005g0102 a0001c0002t0005g0103 a0001c0002t0006g0058 a0001c0002t0006g0105 a0001c0002t0012g0095 a0001c0004t0001g0167 a0001c0004t0001g0186 a0001c0004t0005g0252 a0001c0006t0001g0106 a0001c0006t0005g0031 a0002c0003t0008g0320 a0002c0007t0001g0209 a0002c0007t0002g0224 a0002c0007t0005g0212 a0004c0010t0001g0109 a0004c0010t0001g0110 a0010c0012t0001g0067	121	320	0.3781	-16	c.375 others(33): Show c.375+5349_375+5364delTTTTTTTTTTTTTTTT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128908437	TTCTTTCC others(9): Show TTCTTTCCTTCTTTCCC	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0064 a0001c0002t0004g0064	1	320	0.0031	-16	c.376 others(33): Show c.376-3972_376-3957delCCTCTTTCCTTCTTTC	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128919978	TCTCTCTC others(9): Show TCTCTCTCTCTCTCCCC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00408.hp1 others(51): Show HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01081.hp1 HG01099.hp1 HG01256.hp1 HG01258.hp2 HG01261.hp1 HG01346.hp1 HG01433.hp1 HG01891.hp2 HG01978.hp2 HG01981.hp2 HG01993.hp1 HG02027.hp1 HG02074.hp1 HG02165.hp1 HG02280.hp1 HG02280.hp2 HG02486.hp2 HG02602.hp1 HG02622.hp1 HG02809.hp2 HG02965.hp1 HG02970.hp1 HG03139.hp2 HG03516.hp2 HG03540.hp2 NA18522.hp2 NA18612.hp2 NA18942.hp2 NA18950.hp1 NA18973.hp1 NA18975.hp2 NA18977.hp2 NA18984.hp1 NA18994.hp1 NA19000.hp1 NA19000.hp2 NA19007.hp2 NA19043.hp2 NA19084.hp2 NA19088.hp1 NA20129.hp1 NA20129.hp2 NA20805.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0002c0014 a0003c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0016 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0012 a0001c0004t0001 a0002c0003t0001 a0002c0003t0003 a0002c0003t0004 a0002c0003t0005 a0002c0014t0021 a0003c0005t0001	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0007 others(51): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0015 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0183 a0001c0001t0001g0189 a0001c0001t0001g0216 a0001c0001t0001g0242 a0001c0001t0001g0247 a0001c0001t0001g0256 a0001c0001t0001g0280 a0001c0001t0002g0009 a0001c0001t0002g0246 a0001c0001t0002g0248 a0001c0001t0002g0284 a0001c0001t0002g0289 a0001c0001t0003g0202 a0001c0001t0003g0205 a0001c0001t0003g0215 a0001c0001t0003g0257 a0001c0001t0003g0258 a0001c0001t0005g0096 a0001c0001t0005g0204 a0001c0001t0006g0001 a0001c0001t0006g0013 a0001c0001t0006g0199 a0001c0001t0016g0243 a0001c0001t0018g0259 a0001c0002t0001g0075 a0001c0002t0001g0114 a0001c0002t0001g0122 a0001c0002t0001g0128 a0001c0002t0001g0141 a0001c0002t0001g0304 a0001c0002t0001g0305 a0001c0002t0001g0319 a0001c0002t0002g0115 a0001c0002t0002g0150 a0001c0002t0004g0064 a0001c0002t0012g0095 a0001c0004t0001g0167 a0002c0003t0001g0315 a0002c0003t0003g0163 a0002c0003t0004g0157 a0002c0003t0005g0073 a0002c0014t0021g0084 a0003c0005t0001g0088	54	320	0.1688	-16	c.469 others(33): Show c.469+4993_469+5008delTCTCTCTCTCCCCCTC	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128922162	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03710.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0287 a0001c0001t0002g0287	1	320	0.0031	-16	c.470 others(33): Show c.470-4181_470-4166delGTGTGTGTGTGTGTGT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128977765	CTTTTTTC others(9): Show CTTTTTTCTTTTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00140.hp2 others(139): Show HG00099.hp1 HG00140.hp1 HG00140.hp2 HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00544.hp2 HG00558.hp1 HG00639.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp1 HG01106.hp1 HG01106.hp2 HG01175.hp1 HG01261.hp2 HG01346.hp1 HG01496.hp1 HG01516.hp2 HG01884.hp1 HG01928.hp1 HG01928.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02280.hp2 HG02451.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02622.hp2 HG02683.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02886.hp2 HG02897.hp2 HG02965.hp2 HG02976.hp2 HG03017.hp2 HG03130.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03490.hp2 HG03491.hp2 HG03516.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG04115.hp1 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18941.hp2 NA18942.hp1 NA18947.hp2 NA18948.hp1 NA18948.hp2 NA18949.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18960.hp1 NA18965.hp2 NA18968.hp2 NA18970.hp2 NA18973.hp1 NA18973.hp2 NA18980.hp1 NA18980.hp2 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18989.hp1 NA18994.hp1 NA18994.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp2 NA19004.hp1 NA19007.hp1 NA19011.hp1 NA19030.hp2 NA19054.hp1 NA19056.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19063.hp2 NA19064.hp1 NA19067.hp1 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19079.hp1 NA19085.hp1 NA19085.hp2 NA19088.hp2 NA20752.hp2 NA20805.hp2 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0004 others(6): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0002c0003 a0002c0007 a0003c0005 a0004c0010 a0004c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0015 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0009 a0001c0004t0001 a0001c0004t0005 a0001c0006t0001 a0001c0006t0005 a0002c0003t0002 a0002c0003t0004 a0002c0003t0005 a0002c0007t0001 a0002c0007t0002 a0003c0005t0004 a0004c0010t0001 a0004c0015t0001	a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0011 others(139): Show a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0032 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0072 a0001c0001t0001g0076 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0098 a0001c0001t0001g0101 a0001c0001t0001g0124 a0001c0001t0001g0154 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0183 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0198 a0001c0001t0001g0210 a0001c0001t0001g0221 a0001c0001t0001g0225 a0001c0001t0001g0228 a0001c0001t0001g0232 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0247 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0262 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0282 a0001c0001t0001g0285 a0001c0001t0001g0290 a0001c0001t0001g0299 a0001c0001t0001g0301 a0001c0001t0001g0302 a0001c0001t0002g0037 a0001c0001t0002g0086 a0001c0001t0002g0123 a0001c0001t0002g0185 a0001c0001t0002g0197 a0001c0001t0002g0227 a0001c0001t0002g0254 a0001c0001t0002g0289 a0001c0001t0003g0218 a0001c0001t0004g0039 a0001c0001t0004g0143 a0001c0001t0004g0149 a0001c0001t0004g0180 a0001c0001t0005g0092 a0001c0001t0005g0096 a0001c0001t0005g0099 a0001c0001t0005g0126 a0001c0001t0005g0133 a0001c0001t0005g0173 a0001c0001t0005g0204 a0001c0001t0006g0199 a0001c0001t0009g0056 a0001c0001t0015g0239 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0047 a0001c0002t0001g0051 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0107 a0001c0002t0001g0108 a0001c0002t0001g0117 a0001c0002t0001g0119 a0001c0002t0001g0125 a0001c0002t0001g0127 a0001c0002t0001g0128 a0001c0002t0001g0129 a0001c0002t0001g0130 a0001c0002t0001g0132 a0001c0002t0001g0137 a0001c0002t0001g0140 a0001c0002t0001g0141 a0001c0002t0001g0142 a0001c0002t0001g0152 a0001c0002t0001g0272 a0001c0002t0001g0296 a0001c0002t0001g0305 a0001c0002t0001g0313 a0001c0002t0002g0050 a0001c0002t0002g0115 a0001c0002t0002g0237 a0001c0002t0003g0035 a0001c0002t0003g0059 a0001c0002t0005g0020 a0001c0002t0005g0049 a0001c0002t0005g0102 a0001c0002t0005g0103 a0001c0002t0006g0058 a0001c0002t0006g0105 a0001c0002t0009g0116 a0001c0004t0001g0200 a0001c0004t0005g0252 a0001c0006t0001g0106 a0001c0006t0005g0031 a0002c0003t0002g0268 a0002c0003t0004g0070 a0002c0003t0004g0153 a0002c0003t0004g0157 a0002c0003t0004g0286 a0002c0003t0005g0156 a0002c0007t0001g0209 a0002c0007t0002g0224 a0003c0005t0004g0045 a0003c0005t0004g0145 a0003c0005t0004g0316 a0004c0010t0001g0109 a0004c0010t0001g0110 a0004c0015t0001g0166	142	320	0.4438	-16	c.880 others(33): Show c.880-5157_880-5142delCTTTTTTCTTTTTTTT	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding	11/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
GLT1D1_chr12_128848478_128989968	128986823	ATATAAAT others(9): Show ATATAAATACACATATG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0311 a0001c0002t0001g0311	1	320	0.0031	-16	c.37 others(27): Show c.3734_*3749delTATAAATACACATATG	GLT1D1	ENSG00000151948.12	transcript	ENST00000442111.7	protein_coding		1856		chr12	TogoVar
GLT8D2_chr12_103983987_104055187	103985166	TACACACA others(9): Show TACACACACACACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp2 NA18973.hp1 HG00621.hp2 NA18973.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0303 a0001c0003t0001g0306 a0001c0003t0001g0303 a0001c0003t0001g0306	2	416	0.0048	-16	c.42 others(27): Show c.4226_*4241delGTGTGTGTGTGTGTGT	GLT8D2	ENSG00000120820.13	transcript	ENST00000360814.9	protein_coding		3820		chr12	TogoVar
GLT8D2_chr12_103983987_104055187	103990078	AATATATA others(9): Show AATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01168.hp2 HG01169.hp2 others(8): Show HG01069.hp1 HG01168.hp2 HG01169.hp2 HG01243.hp2 HG02071.hp1 HG02818.hp1 HG03130.hp2 HG03195.hp2 HG03654.hp2 NA18959.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0005t0001 a0001c0001t0001 a0001c0001t0002 a0001c0005t0001	a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 others(8): Show a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0060 a0001c0001t0001g0113 a0001c0001t0002g0355 a0001c0001t0002g0369 a0001c0001t0002g0391 a0001c0005t0001g0206	11	416	0.0264	-16	c.881 others(31): Show c.881-517_881-502delATATATATATATATAT	GLT8D2	ENSG00000120820.13	transcript	ENST00000360814.9	protein_coding	10/10			chr12	TogoVar
GLT8D2_chr12_103983987_104055187	104016693	AAGAAAGA others(9): Show AAGAAAGAAAGGGAGAG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01123.hp1 HG02257.hp1 HG00735.hp1 HG01123.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0057 a0001c0001t0001g0064 a0001c0001t0001g0033 a0001c0001t0001g0057 a0001c0001t0001g0064	3	416	0.0072	-16	c.20- others(31): Show c.20-1604_20-1589delCTCTCCCTTTCTTTCT	GLT8D2	ENSG00000120820.13	transcript	ENST00000360814.9	protein_coding	3/10			chr12	TogoVar
GLT8D2_chr12_103983987_104055187	104016709	GAGAAAGA others(9): Show GAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02683.hp2 NA20905.hp2 HG02683.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0133 a0001c0001t0001g0119 a0001c0001t0001g0133	2	416	0.0048	-16	c.20- others(31): Show c.20-1620_20-1605delTTCTTTCTTTCTTTCT	GLT8D2	ENSG00000120820.13	transcript	ENST00000360814.9	protein_coding	3/10			chr12	TogoVar

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