Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CCDC77_chr12_396644_447642	416377	GTATATAT others(9): Show GTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	NA19005.hp1 NA19005.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0089 a0003c0003t0006g0089	1	432	0.0023	-16	c.271 others(33): Show c.271-2093_271-2078delATATATATATATATAT	CCDC77	ENSG00000120647.10	transcript	ENST00000239830.9	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC77_chr12_396644_447642	423473	TTTTGTGT others(9): Show TTTTGTGTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG04204.hp2 HG01167.hp1 HG04204.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0003 a0004c0004t0001 a0001c0001t0003 a0004c0004t0001	a0001c0001t0003g0125 a0004c0004t0001g0096 a0001c0001t0003g0125 a0004c0004t0001g0096	2	432	0.0046	-16	c.413 others(33): Show c.413+4841_413+4856delGTGTTTTTTTTTGTTT	CCDC77	ENSG00000120647.10	transcript	ENST00000239830.9	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC78_chr16_717582_731443	719796	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG00639.hp2 HG01106.hp2 others(18): Show HG00609.hp1 HG00639.hp2 HG01106.hp2 HG01981.hp1 HG02055.hp2 HG02109.hp2 HG02145.hp2 HG02258.hp1 HG02559.hp2 HG02818.hp1 HG02970.hp2 HG03098.hp2 HG03195.hp2 HG03209.hp1 HG03486.hp2 HG03927.hp1 NA18947.hp1 NA19003.hp2 NA19030.hp1 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0011 others(2): Show a0001c0001 a0001c0003 a0001c0011 a0001c0012 a0001c0017	a0001c0001t0001 a0001c0003t0002 a0001c0011t0001 others(2): Show a0001c0001t0001 a0001c0003t0002 a0001c0011t0001 a0001c0012t0002 a0001c0017t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0003t0002g0004 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0003t0002g0004 a0001c0011t0001g0032 a0001c0012t0002g0061 a0001c0017t0001g0059	21	390	0.0539	-16	c.28 others(27): Show c.2866_*2881delTTTTTTTTTTTTTTTT	CCDC78	ENSG00000162004.19	transcript	ENST00000345165.10	protein_coding		2785		chr16	TogoVar
CCDC7_chr10_32441140_32887864	32455279	ATATTTAT others(9): Show ATATTTATTTATTTATT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00423.hp2 HG00544.hp1 others(57): Show HG00099.hp2 HG00423.hp2 HG00544.hp1 HG00639.hp1 HG00733.hp1 HG01071.hp1 HG01074.hp1 HG01099.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01884.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG02004.hp1 HG02055.hp2 HG02083.hp2 HG02572.hp2 HG02622.hp1 HG02683.hp1 HG02698.hp1 HG02809.hp2 HG02965.hp2 HG03654.hp1 HG03669.hp2 HG03831.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp1 HG04199.hp2 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18747.hp2 NA18949.hp1 NA18951.hp1 NA18952.hp2 NA18953.hp2 NA18955.hp2 NA18957.hp2 NA18963.hp2 NA18983.hp2 NA18992.hp2 NA18998.hp1 NA19002.hp2 NA19030.hp2 NA19060.hp1 NA19064.hp2 NA19065.hp1 NA19066.hp2 NA19070.hp2 NA19074.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp1 NA19082.hp2 NA19083.hp2 NA19090.hp2	a0003 a0006 a0010 others(1): Show a0003 a0006 a0010 a0014	a0003c0004 a0003c0027 a0006c0008 others(2): Show a0003c0004 a0003c0027 a0006c0008 a0010c0012 a0014c0029	a0003c0004t0001 a0003c0027t0001 a0006c0008t0001 others(2): Show a0003c0004t0001 a0003c0027t0001 a0006c0008t0001 a0010c0012t0001 a0014c0029t0001	a0003c0004t0001g0060 a0003c0004t0001g0061 a0003c0004t0001g0062 others(57): Show a0003c0004t0001g0060 a0003c0004t0001g0061 a0003c0004t0001g0062 a0003c0004t0001g0063 a0003c0004t0001g0064 a0003c0004t0001g0065 a0003c0004t0001g0066 a0003c0004t0001g0067 a0003c0004t0001g0068 a0003c0004t0001g0071 a0003c0004t0001g0072 a0003c0004t0001g0073 a0003c0004t0001g0074 a0003c0004t0001g0075 a0003c0004t0001g0076 a0003c0004t0001g0077 a0003c0004t0001g0078 a0003c0004t0001g0079 a0003c0004t0001g0080 a0003c0004t0001g0081 a0003c0004t0001g0082 a0003c0004t0001g0083 a0003c0004t0001g0084 a0003c0004t0001g0085 a0003c0004t0001g0086 a0003c0004t0001g0087 a0003c0004t0001g0088 a0003c0004t0001g0089 a0003c0004t0001g0090 a0003c0004t0001g0091 a0003c0004t0001g0092 a0003c0004t0001g0093 a0003c0004t0001g0094 a0003c0004t0001g0095 a0003c0004t0001g0096 a0003c0004t0001g0097 a0003c0004t0001g0098 a0003c0004t0001g0099 a0003c0004t0001g0100 a0003c0004t0001g0101 a0003c0004t0001g0102 a0003c0004t0001g0103 a0003c0004t0001g0104 a0003c0004t0001g0105 a0003c0004t0001g0112 a0003c0004t0001g0114 a0003c0004t0001g0115 a0003c0004t0001g0299 a0003c0027t0001g0069 a0006c0008t0001g0106 a0006c0008t0001g0107 a0006c0008t0001g0108 a0006c0008t0001g0109 a0006c0008t0001g0110 a0006c0008t0001g0111 a0006c0008t0001g0113 a0010c0012t0001g0001 a0010c0012t0001g0002 a0010c0012t0001g0003 a0014c0029t0001g0070	60	368	0.1630	-16	c.373 others(31): Show c.373-954_373-939delATTTATTTATTTATTT	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	3/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC7_chr10_32441140_32887864	32461715	ATATATAT others(9): Show ATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG03486.hp1 HG02886.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0124 a0001c0001t0001g0117 a0001c0001t0001g0124	2	368	0.0054	-16	c.457 others(31): Show c.457-952_457-937delGTATATATATATATAT	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	4/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC7_chr10_32441140_32887864	32474210	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0336 a0001c0001t0001g0336	1	368	0.0027	-16	c.796 others(31): Show c.796+202_796+217delTTTTTTTTTTTTTTTT	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	9/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC7_chr10_32441140_32887864	32582106	CTATATAT others(9): Show CTATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0361 a0001c0001t0001g0361	1	368	0.0027	-16	c.145 others(33): Show c.1455-909_1455-894delTATATATATATATATA	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	17/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC7_chr10_32441140_32887864	32850774	AACACACA others(9): Show AACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp2 HG02630.hp2 others(3): Show HG02145.hp2 HG02258.hp2 HG02630.hp2 HG02896.hp1 HG03453.hp1 HG06807.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0202 a0004c0005t0001g0203 a0004c0005t0001g0204 others(3): Show a0004c0005t0001g0202 a0004c0005t0001g0203 a0004c0005t0001g0204 a0004c0005t0001g0205 a0004c0005t0001g0206 a0004c0005t0001g0222	6	368	0.0163	-16	c.389 others(34): Show c.3896-1003_3896-988delCACACACACACACACA	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	40/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC7_chr10_32441140_32887864	32881319	CACTGGGG others(9): Show CACTGGGGTGGCAAATA	C C	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0126 a0001c0002t0001g0126	1	368	0.0027	-16	c.18 others(35): Show c.188-1372_*188-1357delCTGGGGTGGCAAATAA	CCDC7	ENSG00000216937.14	transcript	ENST00000639629.2	protein_coding	43/43		INFO_REALIGN_3_PRIME	chr10	TogoVar
CCDC80_chr3_112591797_112646143	112595854	ATATCTAT others(9): Show ATATCTATCTATCTATC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18951.hp2 NA18978.hp2 NA18994.hp2 NA18951.hp2 NA18978.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005	a0001c0001t0003g0001 a0001c0001t0004g0009 a0001c0001t0005g0072 a0001c0001t0003g0001 a0001c0001t0004g0009 a0001c0001t0005g0072	3	380	0.0079	-16	c.95 others(27): Show c.9547_*9562delGATAGATAGATAGATA	CCDC80	ENSG00000091986.16	transcript	ENST00000206423.8	protein_coding		942		chr3	TogoVar
CCDC83_chr11_85850383_85925013	85908551	TTAGATAG others(9): Show TTAGATAGATAGATAGA	T T	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	334	0.0030	-16	c.673 others(33): Show c.673-2685_673-2670delTAGATAGATAGATAGA	CCDC83	ENSG00000150676.13	transcript	ENST00000342404.8	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr11	TogoVar
CCDC83_chr11_85850383_85925013	85908596	TAGATAGA others(9): Show TAGATAGATAGATAGAC	T T	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG03098.hp1 NA18991.hp2 HG02071.hp2 HG03098.hp1 NA18991.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0006 a0002c0003 a0004c0005 a0001c0006 a0002c0003 a0004c0005	a0001c0006t0001 a0002c0003t0002 a0004c0005t0001 a0001c0006t0001 a0002c0003t0002 a0004c0005t0001	a0001c0006t0001g0138 a0002c0003t0002g0141 a0004c0005t0001g0153 a0001c0006t0001g0138 a0002c0003t0002g0141 a0004c0005t0001g0153	3	334	0.0090	-16	c.673 others(33): Show c.673-2677_673-2662delTAGATAGACAGATAGA	CCDC83	ENSG00000150676.13	transcript	ENST00000342404.8	protein_coding	7/10		INFO_REALIGN_3_PRIME	chr11	TogoVar
CCDC85A_chr2_56178990_56391172	56329945	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02572.hp1 HG03139.hp2 HG02145.hp1 HG02572.hp1 HG03139.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0033 a0002c0002t0004g0069 a0002c0002t0004g0070 a0002c0002t0004g0033 a0002c0002t0004g0069 a0002c0002t0004g0070	3	308	0.0097	-16	c.124 others(37): Show c.1241-12913_1241-12898delTTTTTTTTTTTTTTTT	CCDC85A	ENSG00000055813.6	transcript	ENST00000407595.3	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
CCDC85A_chr2_56178990_56391172	56389517	AATATATA others(9): Show AATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG01243.hp1 HG01258.hp2 others(33): Show HG00741.hp1 HG01243.hp1 HG01258.hp2 HG02056.hp2 HG02083.hp2 HG02258.hp1 HG02622.hp2 HG02698.hp2 HG02965.hp1 HG03098.hp2 HG03491.hp2 HG03579.hp1 HG03704.hp2 HG03942.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18951.hp2 NA18959.hp1 NA18973.hp1 NA18975.hp1 NA18980.hp1 NA18994.hp2 NA18998.hp1 NA18999.hp2 NA19004.hp1 NA19007.hp1 NA19011.hp1 NA19012.hp2 NA19075.hp2 NA19077.hp1 NA19087.hp1 NA19088.hp1 NA19088.hp2 NA19091.hp2 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0019 a0002c0002t0003 a0002c0002t0005 a0002c0002t0007 a0003c0003t0001	a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 others(33): Show a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0113 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0143 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0161 a0001c0001t0001g0208 a0001c0001t0001g0233 a0001c0001t0001g0265 a0001c0001t0001g0289 a0001c0001t0001g0302 a0001c0001t0002g0087 a0001c0001t0002g0089 a0001c0001t0002g0102 a0001c0001t0002g0111 a0001c0001t0002g0130 a0001c0001t0002g0145 a0001c0001t0002g0148 a0001c0001t0002g0232 a0001c0001t0002g0266 a0001c0001t0005g0214 a0001c0001t0005g0270 a0001c0001t0007g0072 a0001c0001t0019g0141 a0002c0002t0003g0047 a0002c0002t0003g0048 a0002c0002t0005g0008 a0002c0002t0005g0014 a0002c0002t0005g0086 a0002c0002t0007g0037 a0002c0002t0007g0064 a0003c0003t0001g0196	36	308	0.1169	-16	c.51 others(27): Show c.5163_*5178delATATATATATATATAT	CCDC85A	ENSG00000055813.6	transcript	ENST00000407595.3	protein_coding		3346		chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55283128	CCGAATAT others(9): Show CCGAATATCTGGGACTA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02735.hp2 HG03492.hp2 homoSapiens_chm13v2.hp1 HG02735.hp2 HG03492.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0043 a0001c0001t0003g0061 a0001c0001t0003g0062 a0001c0001t0003g0043 a0001c0001t0003g0061 a0001c0001t0003g0062	3	316	0.0095	-16	c.80 others(27): Show c.8056_*8071delTAGTCCCAGATATTCG	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding		4713		chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55375469	CTATATAT others(9): Show CTATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01346.hp2 HG01884.hp1 others(19): Show HG00140.hp1 HG01346.hp2 HG01884.hp1 HG02132.hp2 HG02145.hp1 HG02145.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp2 HG02622.hp2 HG02647.hp2 HG02717.hp1 HG02818.hp2 HG02970.hp1 HG03139.hp1 HG03516.hp2 HG03540.hp2 NA18966.hp1 NA18975.hp1 NA18990.hp2 NA19091.hp1 NA19240.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0007c0013 a0001c0001 a0001c0002 a0007c0013	a0001c0001t0003 a0001c0001t0008 a0001c0001t0031 others(6): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0031 a0001c0001t0041 a0001c0002t0006 a0001c0002t0010 a0001c0002t0030 a0001c0002t0032 a0007c0013t0039	a0001c0001t0003g0020 a0001c0001t0008g0017 a0001c0001t0008g0023 others(19): Show a0001c0001t0003g0020 a0001c0001t0008g0017 a0001c0001t0008g0023 a0001c0001t0008g0024 a0001c0001t0008g0027 a0001c0001t0031g0026 a0001c0001t0041g0202 a0001c0002t0006g0004 a0001c0002t0006g0005 a0001c0002t0006g0012 a0001c0002t0006g0013 a0001c0002t0006g0014 a0001c0002t0006g0015 a0001c0002t0010g0078 a0001c0002t0010g0079 a0001c0002t0010g0080 a0001c0002t0010g0082 a0001c0002t0010g0083 a0001c0002t0010g0084 a0001c0002t0030g0016 a0001c0002t0032g0081 a0007c0013t0039g0090	22	316	0.0696	-16	c.274 others(31): Show c.274-602_274-587delTATATATATATATATA	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding	3/32			chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55375501	ATATATAT others(9): Show ATATATATATATGTATG	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00741.hp1 HG01175.hp1 others(15): Show HG00423.hp1 HG00741.hp1 HG01175.hp1 HG02486.hp1 HG02717.hp2 HG02886.hp2 HG03209.hp2 HG03540.hp1 NA18522.hp1 NA18955.hp2 NA18959.hp2 NA18964.hp1 NA18971.hp2 NA18982.hp1 NA19087.hp1 NA20129.hp1 NA20300.hp1 NA20905.hp1	a0001 a0004 a0008 a0001 a0004 a0008	a0001c0001 a0004c0007 a0008c0015 a0001c0001 a0004c0007 a0008c0015	a0001c0001t0001 a0001c0001t0017 a0001c0001t0023 others(2): Show a0001c0001t0001 a0001c0001t0017 a0001c0001t0023 a0004c0007t0001 a0008c0015t0033	a0001c0001t0001g0207 a0001c0001t0001g0222 a0001c0001t0001g0226 others(15): Show a0001c0001t0001g0207 a0001c0001t0001g0222 a0001c0001t0001g0226 a0001c0001t0001g0228 a0001c0001t0001g0237 a0001c0001t0001g0242 a0001c0001t0001g0263 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0286 a0001c0001t0001g0290 a0001c0001t0001g0293 a0001c0001t0001g0306 a0001c0001t0001g0308 a0001c0001t0017g0102 a0001c0001t0023g0002 a0004c0007t0001g0284 a0008c0015t0033g0201	18	316	0.0570	-16	c.274 others(31): Show c.274-634_274-619delCATACATATATATATA	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding	3/32			chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55401494	GTATACAT others(9): Show GTATACATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02622.hp1 HG02818.hp1 others(2): Show HG01884.hp2 HG02622.hp1 HG02818.hp1 HG02886.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0026 a0001c0001t0001 a0001c0001t0018 a0001c0001t0026	a0001c0001t0001g0231 a0001c0001t0018g0006 a0001c0001t0018g0007 others(2): Show a0001c0001t0001g0231 a0001c0001t0018g0006 a0001c0001t0018g0007 a0001c0001t0018g0008 a0001c0001t0026g0009	5	316	0.0158	-16	c.165 others(35): Show c.165-12624_165-12609delTATATATATATGTATA	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding	2/32			chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55401499	CATATATA others(9): Show CATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA18969.hp1 NA19088.hp1 NA18969.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0005 a0001c0010t0005 a0001c0001t0005 a0001c0010t0005	a0001c0001t0005g0230 a0001c0010t0005g0248 a0001c0001t0005g0230 a0001c0010t0005g0248	2	316	0.0063	-16	c.165 others(35): Show c.165-12629_165-12614delATATATATATATATAT	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding	2/32			chr2	TogoVar
CCDC88A_chr2_55282842_55424856	55416425	CAAATAAA others(9): Show CAAATAAATAAATAAAT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00738.hp2 HG01070.hp1 others(28): Show HG00423.hp1 HG00738.hp2 HG01070.hp1 HG01071.hp2 HG01261.hp1 HG01515.hp1 HG01975.hp1 HG01978.hp1 HG02027.hp1 HG02027.hp2 HG02056.hp1 HG02135.hp2 HG02300.hp2 HG02630.hp2 HG02886.hp2 HG02922.hp1 HG03041.hp2 HG03453.hp2 NA18522.hp1 NA18946.hp2 NA18951.hp2 NA18959.hp2 NA18964.hp1 NA18968.hp1 NA18971.hp2 NA18973.hp1 NA18975.hp2 NA18986.hp1 NA19002.hp2 NA19074.hp2 NA19076.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0008 a0004c0007 a0001c0001 a0001c0008 a0004c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0012 a0001c0001t0019 a0001c0001t0036 a0001c0008t0007 a0004c0007t0001	a0001c0001t0001g0205 a0001c0001t0001g0277 a0001c0001t0001g0278 others(28): Show a0001c0001t0001g0205 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0281 a0001c0001t0001g0282 a0001c0001t0001g0286 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0002g0093 a0001c0001t0005g0269 a0001c0001t0007g0271 a0001c0001t0007g0275 a0001c0001t0007g0276 a0001c0001t0012g0272 a0001c0001t0012g0287 a0001c0001t0012g0288 a0001c0001t0012g0289 a0001c0001t0012g0294 a0001c0001t0012g0295 a0001c0001t0019g0273 a0001c0001t0019g0274 a0001c0001t0036g0285 a0001c0008t0007g0270 a0004c0007t0001g0283 a0004c0007t0001g0284	31	316	0.0981	-16	c.164 others(33): Show c.164+2375_164+2390delATTTATTTATTTATTT	CCDC88A	ENSG00000115355.18	transcript	ENST00000436346.7	protein_coding	2/32			chr2	TogoVar
CCDC88B_chr11_64335204_64362534	64336083	CACACACA others(9): Show CACACACACACACACAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 NA18522.hp1 HG03195.hp2 NA18522.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0004 a0002c0005t0001g0099 a0002c0005t0001g0004 a0002c0005t0001g0099	2	400	0.0050	-16	c.-41 others(27): Show c.-4183_-4168delACACACACACACACAT	CCDC88B	ENSG00000168071.22	transcript	ENST00000356786.10	protein_coding		4120		chr11	TogoVar
CCDC88C_chr14_91266323_91422820	91366153	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0002 a0001c0009t0002	a0001c0009t0002g0260 a0001c0009t0002g0260	1	284	0.0035	-16	c.271 others(33): Show c.271-6458_271-6443delGTGTGTGTGTGTGTGT	CCDC88C	ENSG00000015133.20	transcript	ENST00000389857.11	protein_coding	3/29			chr14	TogoVar
CCDC91_chr12_28185456_28555166	28250953	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0043 a0002c0002t0001g0043	1	242	0.0041	-16	c.-14 others(33): Show c.-14-6228_-14-6213delGTGTGTGTGTGTGTGT	CCDC91	ENSG00000123106.11	transcript	ENST00000536442.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC91_chr12_28185456_28555166	28396642	TTTTGTGT others(9): Show TTTTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0001 a0008c0010t0001	a0008c0010t0001g0204 a0008c0010t0001g0204	1	242	0.0041	-16	c.762 others(33): Show c.762+5233_762+5248delTTGTGTGTGTGTGTGT	CCDC91	ENSG00000123106.11	transcript	ENST00000536442.6	protein_coding	8/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
CCDC93_chr2_117910481_118019070	117983630	TTATATAT others(9): Show TTATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp1 HG00597.hp2 others(16): Show HG00438.hp2 HG00544.hp1 HG00597.hp2 HG01109.hp2 HG01167.hp1 HG01169.hp2 HG01257.hp2 HG01346.hp1 HG01361.hp1 HG01433.hp1 HG01496.hp1 HG02273.hp1 HG03710.hp2 NA18960.hp1 NA18975.hp1 NA19004.hp2 NA19060.hp2 NA19067.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0004g0005 others(14): Show a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0004g0005 a0001c0001t0004g0103 a0001c0001t0004g0104 a0001c0001t0004g0106 a0001c0001t0004g0107 a0001c0001t0004g0108 a0001c0001t0004g0109 a0001c0001t0004g0110 a0001c0001t0004g0112 a0001c0001t0004g0113 a0001c0001t0004g0114 a0001c0001t0004g0115 a0001c0001t0004g0116 a0001c0001t0004g0117 a0001c0001t0004g0119	19	322	0.0590	-16	c.620 others(33): Show c.620+2323_620+2338delTATATATATATATATA	CCDC93	ENSG00000125633.11	transcript	ENST00000376300.7	protein_coding	7/23			chr2	TogoVar
CCDC9_chr19_47251525_47276953	47254419	TTTTATAT others(9): Show TTTTATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01358.hp1 HG01361.hp2 HG01928.hp2 others(13): Show HG01358.hp1 HG01361.hp2 HG01928.hp2 HG01934.hp1 HG01981.hp1 HG01993.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp1 HG02683.hp2 HG03239.hp2 HG03486.hp1 HG06807.hp2 NA18948.hp2 NA18999.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0004 a0001c0002 a0003c0004	a0001c0002t0002 a0003c0004t0002 a0003c0004t0004 others(9): Show a0001c0002t0002 a0003c0004t0002 a0003c0004t0004 a0003c0004t0005 a0003c0004t0006 a0003c0004t0008 a0003c0004t0009 a0003c0004t0010 a0003c0004t0015 a0003c0004t0030 a0003c0004t0054 a0003c0004t0055	a0001c0002t0002g0054 a0003c0004t0002g0008 a0003c0004t0002g0012 others(11): Show a0001c0002t0002g0054 a0003c0004t0002g0008 a0003c0004t0002g0012 a0003c0004t0002g0059 a0003c0004t0004g0060 a0003c0004t0005g0058 a0003c0004t0006g0011 a0003c0004t0008g0049 a0003c0004t0009g0012 a0003c0004t0010g0006 a0003c0004t0015g0011 a0003c0004t0030g0008 a0003c0004t0054g0006 a0003c0004t0055g0008	16	402	0.0398	-16	c.-22 others(27): Show c.-2261_-2246delTTTATATATATATATA	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding		2105		chr19	TogoVar
CCDC9_chr19_47251525_47276953	47254421	TTATATAT others(9): Show TTATATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG02965.hp2 HG00140.hp2 HG02965.hp2	a0002 a0004 a0002 a0004	a0002c0001 a0004c0005 a0002c0001 a0004c0005	a0002c0001t0092 a0004c0005t0010 a0002c0001t0092 a0004c0005t0010	a0002c0001t0092g0201 a0004c0005t0010g0036 a0002c0001t0092g0201 a0004c0005t0010g0036	2	402	0.0050	-16	c.-22 others(27): Show c.-2259_-2244delTATATATATATATATA	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding		2103		chr19	TogoVar
CCDC9_chr19_47251525_47276953	47265984	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01192.hp1 HG01361.hp2 others(36): Show HG01081.hp1 HG01192.hp1 HG01361.hp2 HG01433.hp2 HG01496.hp2 HG01928.hp2 HG01934.hp1 HG01981.hp1 HG01993.hp2 HG02027.hp1 HG02056.hp1 HG02074.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp2 HG02273.hp1 HG02293.hp2 HG02486.hp2 HG02602.hp1 HG02683.hp2 HG02717.hp2 HG03017.hp1 HG03239.hp2 HG03486.hp1 HG03710.hp1 HG03710.hp2 HG04115.hp2 HG04204.hp2 HG06807.hp2 NA18948.hp2 NA18983.hp1 NA18995.hp2 NA18999.hp1 NA19006.hp1 NA19056.hp2 NA19057.hp2 NA19074.hp2 NA19083.hp1 NA20805.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0003 a0003c0004t0004 others(16): Show a0003c0004t0002 a0003c0004t0003 a0003c0004t0004 a0003c0004t0005 a0003c0004t0006 a0003c0004t0007 a0003c0004t0008 a0003c0004t0009 a0003c0004t0010 a0003c0004t0012 a0003c0004t0015 a0003c0004t0016 a0003c0004t0023 a0003c0004t0030 a0003c0004t0054 a0003c0004t0055 a0003c0004t0060 a0003c0004t0062 a0003c0004t0071	a0003c0004t0002g0008 a0003c0004t0002g0012 a0003c0004t0002g0059 others(31): Show a0003c0004t0002g0008 a0003c0004t0002g0012 a0003c0004t0002g0059 a0003c0004t0003g0008 a0003c0004t0004g0060 a0003c0004t0005g0008 a0003c0004t0005g0012 a0003c0004t0005g0058 a0003c0004t0006g0011 a0003c0004t0006g0030 a0003c0004t0006g0050 a0003c0004t0006g0055 a0003c0004t0007g0011 a0003c0004t0007g0052 a0003c0004t0008g0006 a0003c0004t0008g0049 a0003c0004t0008g0051 a0003c0004t0008g0057 a0003c0004t0009g0006 a0003c0004t0009g0012 a0003c0004t0010g0006 a0003c0004t0010g0012 a0003c0004t0012g0030 a0003c0004t0015g0006 a0003c0004t0015g0011 a0003c0004t0015g0062 a0003c0004t0016g0006 a0003c0004t0023g0122 a0003c0004t0030g0008 a0003c0004t0054g0006 a0003c0004t0055g0008 a0003c0004t0060g0061 a0003c0004t0062g0121 a0003c0004t0071g0056	39	402	0.0970	-16	c.721 others(31): Show c.721-613_721-598delTTTTTTTTTTTTTTTT	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271722	TGTGTGTG others(9): Show TGTGTGTGTGTGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0064 a0005c0006t0064	a0005c0006t0064g0142 a0005c0006t0064g0142	1	402	0.0025	-16	c.46 others(23): Show c.46_*61delTGTGTGTGTGCGCGCG	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	46	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271724	TGTGTGTG others(9): Show TGTGTGTGTGCGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02074.hp1 HG02572.hp2 HG06807.hp1 HG02074.hp1 HG02572.hp2 HG06807.hp1	a0003 a0004 a0003 a0004	a0003c0004 a0004c0005 a0003c0004 a0004c0005	a0003c0004t0023 a0004c0005t0023 a0003c0004t0023 a0004c0005t0023	a0003c0004t0023g0122 a0004c0005t0023g0151 a0004c0005t0023g0155 a0003c0004t0023g0122 a0004c0005t0023g0151 a0004c0005t0023g0155	3	402	0.0075	-16	c.48 others(23): Show c.48_*63delTGTGTGTGCGCGCGCG	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	48	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271726	TGTGTGTG others(9): Show TGTGTGTGCGCGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01099.hp2 HG01192.hp1 HG01261.hp1 others(11): Show HG01099.hp2 HG01192.hp1 HG01261.hp1 HG01261.hp2 HG01516.hp1 HG02056.hp1 HG02165.hp2 HG02717.hp2 HG03017.hp1 HG06807.hp2 NA18940.hp1 NA18970.hp2 NA19054.hp2 NA19074.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0003 a0003c0004 a0001c0002 a0001c0003 a0003c0004	a0001c0002t0006 a0001c0002t0070 a0001c0003t0006 others(2): Show a0001c0002t0006 a0001c0002t0070 a0001c0003t0006 a0003c0004t0006 a0003c0004t0054	a0001c0002t0006g0003 a0001c0002t0006g0022 a0001c0002t0006g0023 others(8): Show a0001c0002t0006g0003 a0001c0002t0006g0022 a0001c0002t0006g0023 a0001c0002t0006g0078 a0001c0002t0070g0015 a0001c0003t0006g0004 a0003c0004t0006g0011 a0003c0004t0006g0030 a0003c0004t0006g0050 a0003c0004t0006g0055 a0003c0004t0054g0006	14	402	0.0348	-16	c.50 others(23): Show c.50_*65delTGTGTGCGCGCGCGCG	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	50	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271728	TGTGTGCG others(9): Show TGTGTGCGCGCGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp2 HG00423.hp1 HG00558.hp1 others(36): Show HG00280.hp2 HG00423.hp1 HG00558.hp1 HG00741.hp2 HG01074.hp2 HG01109.hp1 HG01243.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp2 HG01515.hp1 HG01517.hp1 HG01517.hp2 HG01928.hp2 HG01993.hp1 HG02056.hp2 HG02080.hp1 HG02148.hp1 HG02273.hp1 HG02293.hp1 HG02300.hp1 HG02451.hp1 HG03516.hp2 HG03704.hp1 HG03834.hp1 HG04184.hp2 NA18906.hp2 NA18942.hp2 NA18948.hp2 NA18961.hp2 NA18975.hp1 NA18977.hp1 NA18999.hp1 NA19009.hp2 NA19056.hp1 NA19081.hp1 NA19081.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0002 a0001c0003 a0001c0008 others(3): Show a0001c0002 a0001c0003 a0001c0008 a0002c0001 a0003c0004 a0004c0005	a0001c0002t0002 a0001c0003t0002 a0001c0008t0002 others(4): Show a0001c0002t0002 a0001c0003t0002 a0001c0008t0002 a0002c0001t0002 a0003c0004t0002 a0003c0004t0055 a0004c0005t0002	a0001c0002t0002g0001 a0001c0002t0002g0003 a0001c0002t0002g0013 others(23): Show a0001c0002t0002g0001 a0001c0002t0002g0003 a0001c0002t0002g0013 a0001c0002t0002g0015 a0001c0002t0002g0021 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0086 a0001c0002t0002g0091 a0001c0002t0002g0093 a0001c0002t0002g0102 a0001c0002t0002g0104 a0001c0002t0002g0110 a0001c0003t0002g0004 a0001c0003t0002g0009 a0001c0003t0002g0027 a0001c0003t0002g0065 a0001c0003t0002g0084 a0001c0003t0002g0125 a0001c0008t0002g0001 a0002c0001t0002g0005 a0003c0004t0002g0008 a0003c0004t0002g0012 a0003c0004t0002g0059 a0003c0004t0055g0008 a0004c0005t0002g0153	39	402	0.0970	-16	c.52 others(23): Show c.52_*67delTGTGCGCGCGCGCGCG	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	52	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271730	TGTGCGCG others(9): Show TGTGCGCGCGCGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01891.hp2 HG02622.hp2 HG03579.hp2 HG01891.hp2 HG02622.hp2 HG03579.hp2	a0001 a0008 a0001 a0008	a0001c0003 a0008c0016 a0001c0003 a0008c0016	a0001c0003t0035 a0008c0016t0056 a0001c0003t0035 a0008c0016t0056	a0001c0003t0035g0123 a0001c0003t0035g0124 a0008c0016t0056g0212 a0001c0003t0035g0123 a0001c0003t0035g0124 a0008c0016t0056g0212	3	402	0.0075	-16	c.54 others(23): Show c.54_*69delTGCGCGCGCGCGCGCG	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	54	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47271732	TGCGCGCG others(9): Show TGCGCGCGCGCGCGCGC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02922.hp1 HG03130.hp2 NA18977.hp2 HG02922.hp1 HG03130.hp2 NA18977.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0037 a0002c0001t0099 a0002c0001t0037 a0002c0001t0099	a0002c0001t0037g0005 a0002c0001t0037g0219 a0002c0001t0099g0002 a0002c0001t0037g0005 a0002c0001t0037g0219 a0002c0001t0099g0002	3	402	0.0075	-16	c.67 others(23): Show c.67_*82delGCGCGCGCGCGCGCGC	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding	12/12	67	INFO_REALIGN_3_PRIME	chr19	TogoVar
CCDC9_chr19_47251525_47276953	47274850	GGGTGGGG others(9): Show GGGTGGGGGCGGGGCCT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02622.hp1 HG02886.hp1 others(5): Show HG02145.hp1 HG02622.hp1 HG02886.hp1 HG02976.hp1 HG03130.hp1 HG03209.hp1 NA19081.hp2 NA20300.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0005c0006 a0001c0002 a0005c0006	a0001c0002t0002 a0005c0006t0050 a0005c0006t0126 others(4): Show a0001c0002t0002 a0005c0006t0050 a0005c0006t0126 a0005c0006t0127 a0005c0006t0128 a0005c0006t0129 a0005c0006t0131	a0001c0002t0002g0003 a0005c0006t0050g0032 a0005c0006t0050g0132 others(5): Show a0001c0002t0002g0003 a0005c0006t0050g0032 a0005c0006t0050g0132 a0005c0006t0126g0133 a0005c0006t0127g0033 a0005c0006t0128g0131 a0005c0006t0129g0032 a0005c0006t0131g0033	8	402	0.0199	-16	c.31 others(27): Show c.3173_*3188delGGTGGGGGCGGGGCCT	CCDC9	ENSG00000105321.14	transcript	ENST00000221922.11	protein_coding		2898		chr19	TogoVar
CCKAR_chr4_26476396_26495484	26492240	TTTCCTTC others(9): Show TTTCCTTCCTTCCTTCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG02129.hp2 others(13): Show HG01168.hp1 HG01169.hp2 HG02129.hp2 HG02486.hp2 HG02622.hp1 HG02622.hp2 HG02738.hp1 HG02895.hp2 HG03017.hp1 HG03098.hp2 HG03209.hp2 HG03540.hp1 NA18945.hp2 NA18952.hp2 NA18961.hp2 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0017 others(7): Show a0001c0001t0001g0001 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0034 a0001c0001t0002g0007 a0001c0001t0002g0059 a0001c0001t0002g0075 a0001c0001t0003g0016 a0001c0001t0004g0109	16	454	0.0352	-16	c.-19 others(27): Show c.-1989_-1974delGGAAGGAAGGAAGGAA	CCKAR	ENSG00000163394.6	transcript	ENST00000295589.4	protein_coding		1757		chr4	TogoVar
CCKAR_chr4_26476396_26495484	26492383	TTCTCTTT others(9): Show TTCTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG02145.hp1 HG03209.hp2 HG00741.hp1 HG02145.hp1 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	3	454	0.0066	-16	c.-21 others(27): Show c.-2132_-2117delGAAAGAAAGAAAGAGA	CCKAR	ENSG00000163394.6	transcript	ENST00000295589.4	protein_coding		1900		chr4	TogoVar
CCKAR_chr4_26476396_26495484	26492401	CTCTTTCT others(9): Show CTCTTTCTTTCTTTCTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01070.hp1 HG01255.hp2 HG01433.hp1 others(1): Show HG01070.hp1 HG01255.hp2 HG01433.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	4	454	0.0088	-16	c.-21 others(27): Show c.-2150_-2135delAAGAAAGAAAGAAAGA	CCKAR	ENSG00000163394.6	transcript	ENST00000295589.4	protein_coding		1918		chr4	TogoVar
CCKAR_chr4_26476396_26495484	26492543	TTCTTTTC others(9): Show TTCTTTTCCTTCCTTCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp1 HG03017.hp1 HG03688.hp1 HG00609.hp1 HG03017.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0016 a0001c0001t0004g0109 a0001c0001t0004g0112 a0001c0001t0003g0016 a0001c0001t0004g0109 a0001c0001t0004g0112	3	454	0.0066	-16	c.-22 others(27): Show c.-2292_-2277delGGAAGGAAGGAAAAGA	CCKAR	ENSG00000163394.6	transcript	ENST00000295589.4	protein_coding		2060		chr4	TogoVar
CCKAR_chr4_26476396_26495484	26492547	TTTCCTTC others(9): Show TTTCCTTCCTTCCTTCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG00323.hp1 HG00735.hp1 others(9): Show HG00140.hp1 HG00323.hp1 HG00735.hp1 HG01099.hp1 HG02055.hp1 HG02602.hp2 HG03130.hp2 HG03669.hp1 HG03710.hp1 HG04184.hp1 NA18979.hp1 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0001 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0019 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0019 a0001c0001t0003g0005 a0001c0001t0003g0128 a0001c0001t0004g0118	12	454	0.0264	-16	c.-22 others(27): Show c.-2296_-2281delGGAAGGAAGGAAGGAA	CCKAR	ENSG00000163394.6	transcript	ENST00000295589.4	protein_coding		2064		chr4	TogoVar
CCK_chr3_42252826_42271185	42266678	CCCTTCCT others(9): Show CCCTTCCTTCCTTCCTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0121 a0001c0001t0003g0121	1	430	0.0023	-16	c.-13 others(27): Show c.-1393_-1378delAAGGAAGGAAGGAAGG	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		494		chr3	TogoVar
CCK_chr3_42252826_42271185	42266836	TTTCCTTC others(9): Show TTTCCTTCCTTCCTTCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG02148.hp1 HG02293.hp2 others(6): Show HG00280.hp1 HG02148.hp1 HG02293.hp2 HG02300.hp2 HG03579.hp1 HG03831.hp2 NA18940.hp2 NA19065.hp2 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0016 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0003g0010	9	430	0.0209	-16	c.-15 others(27): Show c.-1551_-1536delGGAAGGAAGGAAGGAA	CCK	ENSG00000187094.12	transcript	ENST00000396169.7	protein_coding		652		chr3	TogoVar
CCL17_chr16_57399767_57421063	57403473	ATATATTA others(9): Show ATATATTATATAATAAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	388	0.0026	-16	c.-14 others(27): Show c.-1422_-1407delTATATTATATAATAAT	CCL17	ENSG00000102970.11	transcript	ENST00000219244.9	protein_coding		1293		chr16	TogoVar
CCL17_chr16_57399767_57421063	57418320	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	388	0.0026	-16	c.24 others(27): Show c.2460_*2475delTTTTTTTTTTTTTTTT	CCL17	ENSG00000102970.11	transcript	ENST00000219244.9	protein_coding		2258		chr16	TogoVar
CCL20_chr2_227808842_227822556	227822199	CATATATA others(9): Show CATATATATATATATAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18973.hp2 NA19001.hp2 NA18973.hp2 NA19001.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0007 a0001c0002t0002g0007	2	448	0.0045	-16	c.51 others(27): Show c.5117_*5132delATATATATATATATAT	CCL20	ENSG00000115009.13	transcript	ENST00000358813.5	protein_coding		4644		chr2	TogoVar
CCL25_chr19_8047760_8067650	8059138	TTATATAA others(9): Show TTATATAATATATAATA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00408.hp1 others(120): Show HG00099.hp1 HG00280.hp2 HG00408.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG00597.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG01070.hp2 HG01071.hp1 HG01099.hp2 HG01109.hp1 HG01175.hp2 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01256.hp2 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01517.hp2 HG01884.hp2 HG01934.hp1 HG01952.hp2 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp1 HG02258.hp2 HG02523.hp2 HG02602.hp2 HG02615.hp2 HG02622.hp2 HG02647.hp1 HG02683.hp1 HG02809.hp2 HG02896.hp1 HG02970.hp2 HG03017.hp1 HG03017.hp2 HG03139.hp1 HG03195.hp1 HG03239.hp1 HG03490.hp2 HG03491.hp2 HG03516.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp2 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA18612.hp2 NA18906.hp1 NA18939.hp2 NA18942.hp2 NA18944.hp2 NA18945.hp1 NA18945.hp2 NA18947.hp1 NA18950.hp2 NA18952.hp1 NA18953.hp2 NA18954.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18960.hp2 NA18964.hp2 NA18966.hp2 NA18970.hp1 NA18970.hp2 NA18973.hp1 NA18977.hp1 NA18979.hp2 NA18980.hp1 NA18980.hp2 NA18981.hp2 NA18982.hp1 NA18982.hp2 NA18991.hp2 NA18995.hp1 NA18995.hp2 NA19002.hp1 NA19003.hp2 NA19004.hp1 NA19007.hp2 NA19043.hp2 NA19063.hp2 NA19064.hp1 NA19064.hp2 NA19066.hp1 NA19067.hp1 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19082.hp2 NA19084.hp1 NA19088.hp1 NA20129.hp1 NA20300.hp2 NA20752.hp2 NA21309.hp2	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0005 a0008	a0001c0001 a0001c0003 a0001c0011 others(5): Show a0001c0001 a0001c0003 a0001c0011 a0002c0002 a0002c0008 a0004c0006 a0005c0007 a0008c0012	a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 others(9): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0003t0001 a0001c0011t0001 a0002c0002t0001 a0002c0008t0001 a0002c0008t0002 a0004c0006t0003 a0005c0007t0001 a0008c0012t0001	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0016 others(63): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0029 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0051 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0083 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0127 a0001c0001t0001g0135 a0001c0001t0001g0141 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0006g0161 a0001c0001t0009g0111 a0001c0001t0010g0116 a0001c0003t0001g0215 a0001c0011t0001g0207 a0001c0011t0001g0208 a0002c0002t0001g0181 a0002c0008t0001g0040 a0002c0008t0001g0042 a0002c0008t0002g0042 a0004c0006t0003g0025 a0004c0006t0003g0223 a0004c0006t0003g0224 a0004c0006t0003g0225 a0004c0006t0003g0226 a0004c0006t0003g0227 a0004c0006t0003g0229 a0004c0006t0003g0232 a0005c0007t0001g0014 a0005c0007t0001g0105 a0005c0007t0001g0196 a0008c0012t0001g0231	123	428	0.2874	-16	c.445 others(33): Show c.445+1249_445+1264delTATATATAATATATAA	CCL25	ENSG00000131142.14	transcript	ENST00000315626.6	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr19	TogoVar
CCL26_chr7_75764538_75777211	75767337	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02965.hp1 HG02976.hp2 HG02965.hp1 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0010	2	424	0.0047	-16	c.23 others(27): Show c.2340_*2355delTTTTTTTTTTTTTTTT	CCL26	ENSG00000006606.9	transcript	ENST00000005180.9	protein_coding		2200		chr7	TogoVar
CCL26_chr7_75764538_75777211	75776513	AAAGGAAG others(9): Show AAAGGAAGGAAGGAAGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp2 HG00738.hp2 HG01070.hp2 others(62): Show HG00733.hp2 HG00738.hp2 HG01070.hp2 HG01081.hp2 HG01099.hp1 HG01167.hp2 HG01168.hp1 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01257.hp1 HG01258.hp2 HG01361.hp1 HG01361.hp2 HG01952.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02040.hp2 HG02155.hp2 HG02486.hp2 HG02602.hp1 HG02683.hp2 HG02698.hp1 HG02735.hp2 HG02818.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02976.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG03654.hp1 HG03704.hp2 HG04115.hp2 HG04184.hp2 HG04228.hp2 NA18522.hp1 NA18906.hp1 NA18947.hp1 NA18950.hp2 NA18966.hp2 NA18967.hp2 NA18994.hp1 NA19055.hp1 NA19060.hp2 NA19063.hp1 NA19065.hp1 NA19068.hp2 NA19077.hp2 NA19080.hp1 NA19240.hp2 NA20300.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 a0001c0001t0001 a0001c0001t0002 a0001c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0010 a0001c0001t0001g0017 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0035 a0001c0001t0001g0040 a0001c0001t0002g0002 a0001c0003t0001g0032	65	424	0.1533	-16	c.-43 others(27): Show c.-4353_-4338delCCTTCCTTCCTTCCTT	CCL26	ENSG00000006606.9	transcript	ENST00000005180.9	protein_coding		4303		chr7	TogoVar
CCL3_chr17_36083256_36095143	36092034	ACCAGGAC others(9): Show ACCAGGACAGGCCTTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18969.hp1 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	381	0.0026	-16	c.-19 others(27): Show c.-1992_-1977delACAAGGCCTGTCCTGG	CCL3	ENSG00000277632.2	transcript	ENST00000613922.2	protein_coding		1892		chr17	TogoVar
CCN1_chr1_85575761_85588950	85580526	GAGACAGA others(9): Show GAGACAGACACACACAC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp2 HG02074.hp1 HG02132.hp1 others(2): Show HG02071.hp2 HG02074.hp1 HG02132.hp1 HG02735.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0001 a0001c0001t0002g0003	5	466	0.0107	-16	c.-45 others(25): Show c.-458_-443delAGACAGACACACACAC	CCN1	ENSG00000142871.18	transcript	ENST00000451137.7	protein_coding		234		chr1	TogoVar

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