Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHL1_chr3_191763_414417	324605	CTTTATTT others(9): Show CTTTATTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00738.hp2 HG01167.hp2 others(13): Show HG00099.hp1 HG00738.hp2 HG01167.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01433.hp1 HG02055.hp1 HG02280.hp1 HG02602.hp1 HG02896.hp2 HG02897.hp1 HG03239.hp2 HG03704.hp1 HG03942.hp2 HG06807.hp1	a0001 a0002 a0004 others(3): Show a0001 a0002 a0004 a0008 a0012 a0026	a0001c0001 a0002c0002 a0004c0004 others(3): Show a0001c0001 a0002c0002 a0004c0004 a0008c0007 a0012c0012 a0026c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0002c0002t0002 a0004c0004t0001 a0008c0007t0001 a0012c0012t0001 a0026c0014t0053	a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 others(13): Show a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0270 a0001c0001t0001g0271 a0001c0001t0002g0039 a0001c0001t0002g0119 a0001c0001t0003g0262 a0001c0001t0005g0160 a0002c0002t0002g0116 a0004c0004t0001g0288 a0008c0007t0001g0289 a0012c0012t0001g0141 a0026c0014t0053g0042	16	290	0.0552	-16	c.92- others(31): Show c.92-1326_92-1311delATTTATTTATTTATTT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	3/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHMP1A_chr16_89639435_89662708	89655363	TCTCAGCT others(9): Show TCTCAGCTTTCCCTCAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG00408.hp1 others(122): Show HG00099.hp2 HG00280.hp2 HG00408.hp1 HG00423.hp2 HG00438.hp1 HG00558.hp2 HG00597.hp1 HG00639.hp1 HG00642.hp2 HG00673.hp2 HG00733.hp2 HG00738.hp1 HG00738.hp2 HG00741.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01081.hp2 HG01099.hp2 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01261.hp1 HG01346.hp2 HG01358.hp2 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01517.hp1 HG01517.hp2 HG01934.hp2 HG01943.hp2 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG02027.hp1 HG02056.hp1 HG02109.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02273.hp2 HG02300.hp2 HG02486.hp1 HG02559.hp1 HG02559.hp2 HG02602.hp2 HG02615.hp1 HG02622.hp2 HG02647.hp1 HG02683.hp2 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03486.hp1 HG03579.hp1 HG03654.hp2 HG03704.hp2 HG03710.hp2 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG04115.hp2 HG04184.hp2 HG04199.hp2 HG06807.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp1 NA18942.hp2 NA18947.hp1 NA18949.hp1 NA18950.hp1 NA18955.hp2 NA18961.hp1 NA18966.hp1 NA18966.hp2 NA18969.hp1 NA18971.hp2 NA18975.hp2 NA18979.hp1 NA18986.hp2 NA18988.hp1 NA18994.hp2 NA19004.hp1 NA19005.hp1 NA19010.hp2 NA19012.hp1 NA19056.hp1 NA19064.hp1 NA19066.hp1 NA19070.hp1 NA19088.hp1 NA19088.hp2 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0012 a0001c0001t0014 a0001c0001t0021 a0001c0004t0003	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(97): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0049 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0129 a0001c0001t0001g0132 a0001c0001t0001g0311 a0001c0001t0001g0350 a0001c0001t0001g0351 a0001c0001t0003g0007 a0001c0001t0003g0013 a0001c0001t0003g0023 a0001c0001t0003g0050 a0001c0001t0003g0051 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0055 a0001c0001t0003g0056 a0001c0001t0003g0057 a0001c0001t0003g0058 a0001c0001t0003g0059 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0062 a0001c0001t0003g0063 a0001c0001t0003g0064 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0003g0067 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0070 a0001c0001t0003g0071 a0001c0001t0003g0072 a0001c0001t0003g0073 a0001c0001t0003g0074 a0001c0001t0003g0075 a0001c0001t0003g0076 a0001c0001t0003g0077 a0001c0001t0003g0078 a0001c0001t0003g0079 a0001c0001t0003g0080 a0001c0001t0003g0081 a0001c0001t0003g0082 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0123 a0001c0001t0003g0124 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0127 a0001c0001t0003g0128 a0001c0001t0010g0027 a0001c0001t0010g0028 a0001c0001t0012g0084 a0001c0001t0012g0085 a0001c0001t0014g0030 a0001c0001t0021g0354 a0001c0004t0003g0054	125	392	0.3189	-16	c.8-1 others(29): Show c.8-1456_8-1441delGTGAGGGAAAGCTGAG	CHMP1A	ENSG00000131165.16	transcript	ENST00000397901.8	protein_coding	1/6			chr16	TogoVar
CHMP1B_chr18_11846413_11859444	11858858	TCCATTTT others(9): Show TCCATTTTGGAGGTTGG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	438	0.0023	-16	c.67 others(27): Show c.6748_*6763delCCATTTTGGAGGTTGG	CHMP1B	ENSG00000255112.3	transcript	ENST00000526991.3	protein_coding		4415		chr18	TogoVar
CHMP4C_chr8_81727448_81764515	81736085	CAATAAAT others(9): Show CAATAAATAAATAAATA	C C	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01891.hp1 HG02129.hp2 others(12): Show HG00408.hp2 HG01891.hp1 HG02129.hp2 HG03225.hp2 NA18940.hp1 NA18973.hp2 NA18978.hp2 NA18984.hp1 NA19007.hp1 NA19055.hp1 NA19070.hp2 NA19074.hp2 NA19079.hp1 NA19090.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 others(9): Show a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0087 a0001c0001t0002g0088 a0001c0001t0002g0211 a0001c0001t0003g0212 a0001c0001t0003g0213	15	408	0.0368	-16	c.190 others(33): Show c.190+3309_190+3324delAAATAAATAAATAAAT	CHMP4C	ENSG00000164695.5	transcript	ENST00000297265.5	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHMP7_chr8_23238637_23266999	23250620	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01952.hp2 HG02135.hp2 others(1): Show HG01123.hp1 HG01952.hp2 HG02135.hp2 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0001 a0001c0001t0003 a0001c0001t0008	a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0003g0159 others(1): Show a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0003g0159 a0001c0001t0008g0313	4	438	0.0091	-16	c.471 others(33): Show c.471+1269_471+1284delGTGTGTGTGTGTGTGT	CHMP7	ENSG00000147457.14	transcript	ENST00000397677.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr8	TogoVar
CHM_chrX_85856180_86052558	85906908	CTGATCAC others(9): Show CTGATCACCTGAGGTCA	C C	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	245	0.0041	-16	c.124 others(35): Show c.1244+4337_1244+4352delTGACCTCAGGTGATCA	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	9/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85913332	AAAAGAAA others(9): Show AAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02970.hp1 HG03130.hp1 others(2): Show HG02559.hp2 HG02970.hp1 HG03130.hp1 HG03453.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0016 a0001c0001t0004 a0001c0001t0016	a0001c0001t0004g0211 a0001c0001t0004g0218 a0001c0001t0004g0236 others(2): Show a0001c0001t0004g0211 a0001c0001t0004g0218 a0001c0001t0004g0236 a0001c0001t0004g0237 a0001c0001t0016g0212	5	245	0.0204	-16	c.116 others(35): Show c.1167-2010_1167-1995delCTTTCTTTCTTTCTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	85949978	AATATATA others(9): Show AATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02602.hp1 HG03654.hp1 others(12): Show HG02040.hp1 HG02602.hp1 HG03654.hp1 HG03831.hp2 NA18945.hp1 NA18948.hp1 NA18955.hp1 NA18969.hp2 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA19005.hp1 NA19006.hp1 NA19088.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0005 a0001c0001t0001 a0001c0003t0005	a0001c0001t0001g0047 a0001c0001t0001g0083 a0001c0001t0001g0084 others(12): Show a0001c0001t0001g0047 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0123 a0001c0001t0001g0132 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0155 a0001c0001t0001g0168 a0001c0001t0001g0175 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0001g0200 a0001c0003t0005g0118	15	245	0.0612	-16	c.116 others(35): Show c.1166+6159_1166+6174delATATATATATATATAT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHM_chrX_85856180_86052558	86021077	TACACACA others(9): Show TACACACATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG03710.hp1 HG02683.hp2 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0117 a0001c0001t0001g0147 a0001c0001t0001g0117 a0001c0001t0001g0147	2	245	0.0082	-16	c.116 others(33): Show c.116+6398_116+6413delGTATATATATGTGTGT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14			chrX	TogoVar
CHM_chrX_85856180_86052558	86021126	GTATATAT others(9): Show GTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	NA18949.hp1 NA19086.hp1 NA18949.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0135 a0001c0001t0003g0173 a0001c0001t0003g0135 a0001c0001t0003g0173	2	245	0.0082	-16	c.116 others(33): Show c.116+6349_116+6364delTATATATATATATATA	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14			chrX	TogoVar
CHM_chrX_85856180_86052558	86026102	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0035	1	245	0.0041	-16	c.116 others(33): Show c.116+1373_116+1388delAAAAAAAAAAAAAAAA	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	2/14			chrX	TogoVar
CHN1_chr2_174793809_175010381	174807446	CTGTGTGT others(9): Show CTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00673.hp1 HG02083.hp1 others(2): Show HG00099.hp2 HG00673.hp1 HG02083.hp1 HG02258.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0199 a0001c0001t0001g0204 a0001c0001t0001g0217 others(2): Show a0001c0001t0001g0199 a0001c0001t0001g0204 a0001c0001t0001g0217 a0001c0001t0001g0254 a0001c0001t0006g0041	5	276	0.0181	-16	c.110 others(35): Show c.1102+1443_1102+1458delCACACACACACACACA	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	11/12			chr2	TogoVar
CHN2_chr7_29189775_29519328	29200398	CTCCTTCC others(9): Show CTCCTTCCTTCCTTCTT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 NA21309.hp2 HG02280.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0001 a0002c0004t0017 a0001c0001t0001 a0002c0004t0017	a0001c0001t0001g0064 a0002c0004t0017g0128 a0001c0001t0001g0064 a0002c0004t0017g0128	2	232	0.0086	-16	c.49+ others(31): Show c.49+5439_49+5454delTTTCCTTCCTTCCTTC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29273374	TATATATA others(9): Show TATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0068 a0001c0002t0003g0068	1	232	0.0043	-16	c.49+ others(33): Show c.49+78386_49+78401delTATATATATATATACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29374801	TTTCCTTC others(9): Show TTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0013 a0003c0007t0013	a0003c0007t0013g0013 a0003c0007t0013g0013	1	232	0.0043	-16	c.144 others(33): Show c.144+6848_144+6863delTCCTTCCTTCCTTCCT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29440684	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00741.hp2 HG01192.hp2 others(18): Show HG00639.hp1 HG00741.hp2 HG01192.hp2 HG01934.hp2 HG01981.hp1 HG02040.hp2 HG02055.hp1 HG02280.hp1 HG02622.hp2 HG02818.hp1 HG02886.hp2 HG02897.hp2 HG02922.hp2 HG02976.hp2 HG03486.hp2 HG03710.hp1 NA18612.hp1 NA18906.hp1 NA19000.hp1 NA19080.hp1 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0002c0003 a0002c0004 a0002c0009	a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 others(8): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0002t0002 a0001c0002t0004 a0001c0005t0001 a0002c0003t0018 a0002c0004t0001 a0002c0009t0002	a0001c0001t0001g0025 a0001c0001t0001g0064 a0001c0001t0001g0103 others(18): Show a0001c0001t0001g0025 a0001c0001t0001g0064 a0001c0001t0001g0103 a0001c0001t0001g0130 a0001c0001t0001g0166 a0001c0001t0001g0225 a0001c0001t0005g0159 a0001c0001t0007g0122 a0001c0001t0007g0205 a0001c0001t0010g0125 a0001c0001t0011g0046 a0001c0001t0011g0164 a0001c0002t0002g0077 a0001c0002t0002g0086 a0001c0002t0004g0004 a0001c0002t0004g0074 a0001c0002t0004g0132 a0001c0005t0001g0137 a0002c0003t0018g0047 a0002c0004t0001g0121 a0002c0009t0002g0033	21	232	0.0905	-16	c.577 others(35): Show c.577-39582_577-39567delAAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29460415	GGCTTAGC others(9): Show GGCTTAGCCAGCAGGGA	G G	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp1 HG02055.hp2 others(15): Show HG01069.hp1 HG01071.hp1 HG02055.hp2 HG02109.hp2 HG02145.hp1 HG02145.hp2 HG02258.hp2 HG02622.hp2 HG02809.hp1 HG02818.hp1 HG02886.hp2 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03471.hp2 HG03579.hp2 HG06807.hp2 NA19030.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0002c0003 a0002c0004 a0003c0007	a0001c0001t0001 a0001c0001t0011 a0001c0001t0012 others(7): Show a0001c0001t0001 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0002t0002 a0001c0006t0002 a0002c0003t0002 a0002c0003t0021 a0002c0004t0001 a0003c0007t0013	a0001c0001t0001g0076 a0001c0001t0001g0103 a0001c0001t0011g0046 others(15): Show a0001c0001t0001g0076 a0001c0001t0001g0103 a0001c0001t0011g0046 a0001c0001t0011g0164 a0001c0001t0012g0040 a0001c0001t0012g0055 a0001c0001t0012g0056 a0001c0001t0012g0172 a0001c0001t0015g0117 a0001c0002t0002g0078 a0001c0002t0002g0168 a0001c0006t0002g0198 a0002c0003t0002g0069 a0002c0003t0002g0154 a0002c0003t0021g0112 a0002c0004t0001g0121 a0003c0007t0013g0013 a0003c0007t0013g0135	18	232	0.0776	-16	c.577 others(35): Show c.577-19859_577-19844delAGCCAGCAGGGAGCTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29494950	TAAAAAAA others(9): Show TAAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0018 a0001c0001t0005g0018	1	232	0.0043	-16	c.655 others(31): Show c.655-986_655-971delAAAAAAAAAAAAAAAA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23750869	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG01099.hp1 HG01109.hp2 others(6): Show HG00544.hp2 HG01099.hp1 HG01109.hp2 HG02896.hp1 HG03491.hp1 HG03669.hp2 NA18983.hp1 NA19009.hp1 NA19072.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0014	9	392	0.0230	-16	c.-41 others(27): Show c.-4180_-4165delTTTCTTTCTTTCTTTC	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4156		chr16	TogoVar
CHP2_chr16_23750026_23763935	23750925	CTTTCTTT others(9): Show CTTTCTTTCTTTCTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	392	0.0026	-16	c.-41 others(27): Show c.-4124_-4109delTTTCTTTCTTTCTTTT	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4100		chr16	TogoVar
CHPF_chr2_219533954_219548809	219534764	GCCATCCA others(9): Show GCCATCCATCCATCCAT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00323.hp2 others(63): Show HG00099.hp2 HG00280.hp1 HG00323.hp2 HG00438.hp2 HG00544.hp2 HG00558.hp2 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00642.hp2 HG00733.hp2 HG01069.hp2 HG01071.hp2 HG01081.hp2 HG01099.hp2 HG01106.hp1 HG01123.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01192.hp2 HG01243.hp2 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp2 HG01361.hp1 HG01934.hp2 HG01975.hp1 HG02015.hp2 HG02040.hp1 HG02071.hp2 HG02074.hp2 HG02132.hp1 HG02293.hp1 HG02451.hp2 HG03225.hp1 HG03491.hp1 HG03492.hp1 HG03688.hp1 HG03834.hp1 HG04115.hp1 HG06807.hp2 NA18949.hp2 NA18959.hp2 NA18964.hp2 NA18968.hp1 NA18973.hp2 NA18974.hp2 NA18977.hp1 NA18978.hp1 NA18979.hp1 NA18982.hp2 NA18987.hp2 NA18988.hp2 NA18992.hp1 NA18993.hp2 NA19004.hp2 NA19006.hp2 NA19009.hp2 NA19043.hp2 NA19056.hp1 NA19074.hp1 NA19084.hp2 NA20805.hp2	a0001 a0007 a0011 a0001 a0007 a0011	a0001c0001 a0001c0002 a0001c0006 others(2): Show a0001c0001 a0001c0002 a0001c0006 a0007c0015 a0011c0016	a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 others(5): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0004 a0001c0002t0006 a0001c0002t0008 a0001c0006t0001 a0007c0015t0001 a0011c0016t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0002t0001g0002 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0002t0001g0002 a0001c0002t0001g0017 a0001c0002t0001g0043 a0001c0002t0004g0038 a0001c0002t0006g0039 a0001c0002t0008g0049 a0001c0006t0001g0010 a0007c0015t0001g0036 a0011c0016t0001g0037	66	396	0.1667	-16	c.46 others(27): Show c.4603_*4618delATGGATGGATGGATGG	CHPF	ENSG00000123989.15	transcript	ENST00000243776.11	protein_coding		4189		chr2	TogoVar
CHRDL1_chrX_110668856_110800817	110669064	ATATTTAT others(9): Show ATATTTATATATATATT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG02258.hp1 HG01106.hp1 HG02258.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0006 a0001c0002t0004 a0001c0002t0006	a0001c0002t0004g0038 a0001c0002t0006g0021 a0001c0002t0004g0038 a0001c0002t0006g0021	2	172	0.0116	-16	c.71 others(27): Show c.7151_*7166delAATATATATATAAATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding		4791		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110669080	TTATATAT others(9): Show TTATATATATATATATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0045 a0001c0001t0035g0045	1	172	0.0058	-16	c.71 others(27): Show c.7135_*7150delTATATATATATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding		4775		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110689072	GTATATAT others(9): Show GTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG03490.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0124 a0001c0001t0002g0124	1	172	0.0058	-16	c.779 others(31): Show c.779-285_779-270delTATATATATATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110690007	ATATATCT others(9): Show ATATATCTATATATCTG	A A	intron_variant intron_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0073 a0001c0001t0002g0073	1	172	0.0058	-16	c.779 others(33): Show c.779-1220_779-1205delCAGATATATAGATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110690348	ACATATAT others(9): Show ACATATATATATATTCT	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0030 a0001c0002t0006g0030	1	172	0.0058	-16	c.779 others(33): Show c.779-1561_779-1546delAGAATATATATATATG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110697813	TCCACACA others(9): Show TCCACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0020 a0001c0002t0006g0020	1	172	0.0058	-16	c.609 others(33): Show c.609+2825_609+2840delGTGTGTGTGTGTGTGG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	7/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110697814	CCACACAC others(9): Show CCACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02622.hp1 HG02647.hp1 others(8): Show HG02280.hp1 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG02922.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 NA18906.hp1 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0004 a0001c0002 a0003c0004	a0001c0002t0003 a0001c0002t0004 a0001c0002t0007 others(3): Show a0001c0002t0003 a0001c0002t0004 a0001c0002t0007 a0001c0002t0011 a0001c0002t0021 a0003c0004t0004	a0001c0002t0003g0001 a0001c0002t0003g0018 a0001c0002t0004g0049 others(7): Show a0001c0002t0003g0001 a0001c0002t0003g0018 a0001c0002t0004g0049 a0001c0002t0004g0159 a0001c0002t0004g0160 a0001c0002t0004g0161 a0001c0002t0007g0017 a0001c0002t0011g0060 a0001c0002t0021g0019 a0003c0004t0004g0079	11	172	0.0640	-16	c.609 others(33): Show c.609+2824_609+2839delTGTGTGTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	7/11			chrX	TogoVar
CHRDL2_chr11_74691429_74736426	74712353	GGGGCAGG others(9): Show GGGGCAGGGGATGGGAA	G G	intron_variant intron_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0033 a0001c0003t0001g0033	1	392	0.0026	-16	c.289 others(33): Show c.289+1017_289+1032delTTCCCATCCCCTGCCC	CHRDL2	ENSG00000054938.17	transcript	ENST00000376332.8	protein_coding	3/10			chr11	TogoVar
CHRDL2_chr11_74691429_74736426	74736207	TTAAATAA others(9): Show TTAAATAAATAAATAAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0232 a0001c0002t0003g0232	1	392	0.0026	-16	c.-53 others(27): Show c.-5335_-5320delTTTATTTATTTATTTA	CHRDL2	ENSG00000054938.17	transcript	ENST00000376332.8	protein_coding		4782		chr11	TogoVar
CHRD_chr3_184375054_184394829	184385666	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02683.hp1 HG04228.hp2 HG00735.hp1 HG02683.hp1 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0106 a0001c0001t0001g0046 a0001c0001t0001g0106	3	428	0.0070	-16	c.181 others(33): Show c.1819-366_1819-351delAAAAAAAAAAAAAAAA	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding	14/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHRD_chr3_184375054_184394829	184388387	GCATCCAT others(9): Show GCATCCATCCATCCATC	G G	intron_variant intron_variant	MODIFIER	HG03453.hp1 NA18948.hp2 NA21309.hp1 HG03453.hp1 NA18948.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0015 a0001c0001 a0001c0015	a0001c0001t0001 a0001c0015t0001 a0001c0001t0001 a0001c0015t0001	a0001c0001t0001g0061 a0001c0001t0001g0084 a0001c0015t0001g0149 a0001c0001t0001g0061 a0001c0001t0001g0084 a0001c0015t0001g0149	3	428	0.0070	-16	c.255 others(33): Show c.2555-170_2555-155delATCCATCCATCCATCC	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding	20/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHRM1_chr11_62903679_62926363	62924662	CTCTCTCT others(9): Show CTCTCTCTATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 HG02970.hp1 HG03540.hp1 HG02258.hp2 HG02970.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0121 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0121	3	420	0.0071	-16	c.-35 others(27): Show c.-3539_-3524delTATATATATAGAGAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3300		chr11	TogoVar
CHRM1_chr11_62903679_62926363	62924664	CTCTCTAT others(9): Show CTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	420	0.0024	-16	c.-35 others(27): Show c.-3541_-3526delTATATATATATAGAGA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3302		chr11	TogoVar
CHRM1_chr11_62903679_62926363	62924668	CTATATAT others(9): Show CTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0007 a0001c0002t0001g0007	1	420	0.0024	-16	c.-35 others(27): Show c.-3545_-3530delTATATATATATATATA	CHRM1	ENSG00000168539.4	transcript	ENST00000306960.4	protein_coding		3306		chr11	TogoVar
CHRM2_chr7_136863652_137025213	136868746	GCACACAC others(9): Show GCACACACACACACACA	G G	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00099.hp2 HG00733.hp1 HG00741.hp2 others(8): Show HG00099.hp2 HG00733.hp1 HG00741.hp2 HG01258.hp2 HG01978.hp2 HG02683.hp2 HG02723.hp2 HG03669.hp2 HG04199.hp1 HG04204.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0036 a0001c0001t0037 others(2): Show a0001c0001t0012 a0001c0001t0036 a0001c0001t0037 a0001c0001t0085 a0001c0001t0086	a0001c0001t0012g0055 a0001c0001t0012g0060 a0001c0001t0012g0061 others(8): Show a0001c0001t0012g0055 a0001c0001t0012g0060 a0001c0001t0012g0061 a0001c0001t0012g0062 a0001c0001t0012g0063 a0001c0001t0036g0056 a0001c0001t0036g0059 a0001c0001t0037g0053 a0001c0001t0037g0054 a0001c0001t0085g0057 a0001c0001t0086g0058	11	320	0.0344	-16	c.-51 others(25): Show c.-516_-501delCACACACACACACACA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	1/4	146092	INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	136902212	TATCCATC others(9): Show TATCCATCCATCCATCC	T T	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0148 a0001c0001t0002g0148	1	320	0.0031	-16	c.-12 others(37): Show c.-125+32822_-125+32837delCATCCATCCATCCATC	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	136938915	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 NA18612.hp1 HG00558.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0187 a0001c0001t0002g0293 a0001c0001t0002g0187 a0001c0001t0002g0293	2	320	0.0063	-16	c.-12 others(37): Show c.-124-53239_-124-53224delAAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137003473	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00597.hp1 HG00609.hp2 others(23): Show HG00558.hp1 HG00597.hp1 HG00609.hp2 HG01123.hp2 HG01243.hp1 HG01257.hp2 HG01258.hp1 HG02273.hp1 HG02622.hp1 HG03017.hp1 HG03471.hp2 NA18906.hp2 NA18941.hp2 NA18947.hp1 NA18952.hp2 NA18957.hp2 NA18963.hp1 NA18971.hp1 NA18975.hp1 NA18979.hp2 NA19007.hp1 NA19007.hp2 NA19063.hp2 NA19081.hp1 NA19087.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0001t0010 a0001c0001t0019 a0001c0001t0021 a0001c0001t0033 a0001c0001t0054 a0001c0001t0058 a0001c0001t0067 a0001c0002t0017	a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0130 others(22): Show a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0130 a0001c0001t0001g0140 a0001c0001t0001g0171 a0001c0001t0001g0190 a0001c0001t0001g0197 a0001c0001t0001g0281 a0001c0001t0001g0299 a0001c0001t0002g0148 a0001c0001t0002g0160 a0001c0001t0002g0293 a0001c0001t0003g0273 a0001c0001t0004g0077 a0001c0001t0006g0213 a0001c0001t0009g0304 a0001c0001t0010g0022 a0001c0001t0019g0039 a0001c0001t0021g0050 a0001c0001t0033g0113 a0001c0001t0054g0252 a0001c0001t0058g0237 a0001c0001t0067g0150 a0001c0002t0017g0240 a0001c0002t0017g0241	26	320	0.0813	-16	c.-47 others(35): Show c.-47+11258_-47+11273delACACACACACACACAC	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137023734	TGATAGAT others(9): Show TGATAGATAGATAGATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0061 a0001c0001t0012g0061	1	320	0.0031	-16	c.74 others(27): Show c.7469_*7484delGATAGATAGATAGATA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding		3522		chr7	TogoVar
CHRM3_chr1_239381568_239920450	239383367	TTTTCTTT others(9): Show TTTTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02040.hp1 HG02109.hp1 HG03927.hp1 others(2): Show HG02040.hp1 HG02109.hp1 HG03927.hp1 NA18943.hp2 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 a0001c0001t0023 a0001c0001t0058	a0001c0001t0001g0009 a0001c0001t0002g0006 a0001c0001t0022g0008 others(2): Show a0001c0001t0001g0009 a0001c0001t0002g0006 a0001c0001t0022g0008 a0001c0001t0023g0007 a0001c0001t0058g0011	5	116	0.0431	-16	c.-43 others(27): Show c.-4380_-4365delTTTCTTTCTTTCTTTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		3200		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239383405	TTCTTTCT others(9): Show TTCTTTCTTTCTTTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02083.hp1 HG02735.hp1 HG03471.hp2 others(6): Show HG02083.hp1 HG02735.hp1 HG03471.hp2 HG04115.hp2 HG06807.hp1 NA18944.hp2 NA18955.hp1 NA20129.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0013 a0001c0001t0038 a0001c0001t0044 a0001c0001t0049 a0001c0001t0052	a0001c0001t0001g0058 a0001c0001t0001g0105 a0001c0001t0003g0092 others(6): Show a0001c0001t0001g0058 a0001c0001t0001g0105 a0001c0001t0003g0092 a0001c0001t0008g0067 a0001c0001t0013g0078 a0001c0001t0038g0032 a0001c0001t0044g0104 a0001c0001t0049g0108 a0001c0001t0052g0106	9	116	0.0776	-16	c.-43 others(27): Show c.-4342_-4327delTCTTTCTTTCTTTCTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		3162		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239385936	AGTGTGTG others(9): Show AGTGTGTGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG01256.hp1 HG01261.hp1 others(9): Show HG01243.hp2 HG01256.hp1 HG01261.hp1 HG01496.hp2 HG02451.hp1 HG03098.hp1 HG03130.hp1 HG03209.hp2 HG03831.hp2 HG04115.hp1 NA20129.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 others(8): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0013 a0001c0001t0014 a0001c0001t0030 a0001c0001t0042 a0001c0001t0047 a0001c0001t0056	a0001c0001t0002g0069 a0001c0001t0005g0077 a0001c0001t0006g0044 others(9): Show a0001c0001t0002g0069 a0001c0001t0005g0077 a0001c0001t0006g0044 a0001c0001t0007g0068 a0001c0001t0008g0067 a0001c0001t0008g0072 a0001c0001t0013g0078 a0001c0001t0014g0075 a0001c0001t0030g0023 a0001c0001t0042g0080 a0001c0001t0047g0070 a0001c0001t0056g0079	12	116	0.1035	-16	c.-18 others(27): Show c.-1811_-1796delGTGTGTGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		631		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404350	GAGAAAGA others(9): Show GAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0070 a0001c0001t0047g0070	1	116	0.0086	-16	c.-52 others(37): Show c.-521+17169_-521+17184delGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404396	GAAAGAAA others(9): Show GAAAGAAAGAAAGAAAA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03195.hp2 HG02451.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0039 a0001c0001t0005 a0001c0001t0039	a0001c0001t0005g0077 a0001c0001t0039g0112 a0001c0001t0005g0077 a0001c0001t0039g0112	2	116	0.0172	-16	c.-52 others(37): Show c.-521+17171_-521+17186delAAGAAAGAAAGAAAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404398	AAGAAAGA others(9): Show AAGAAAGAAAGAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG02109.hp2 HG00140.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0034 a0001c0001t0001 a0001c0001t0034	a0001c0001t0001g0109 a0001c0001t0034g0089 a0001c0001t0001g0109 a0001c0001t0034g0089	2	116	0.0172	-16	c.-52 others(37): Show c.-521+17173_-521+17188delGAAAGAAAGAAAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404404	GAAAGAAA others(9): Show GAAAGAAAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0084 a0001c0001t0057g0084	1	116	0.0086	-16	c.-52 others(37): Show c.-521+17179_-521+17194delAAGAAAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404406	AAGAAAAA others(9): Show AAGAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0031 a0001c0001t0010g0031	1	116	0.0086	-16	c.-52 others(37): Show c.-521+17181_-521+17196delGAAAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404408	GAAAAAGA others(9): Show GAAAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03927.hp1 NA19012.hp1 HG03927.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0023 a0001c0001t0017 a0001c0001t0023	a0001c0001t0017g0050 a0001c0001t0023g0007 a0001c0001t0017g0050 a0001c0001t0023g0007	2	116	0.0172	-16	c.-52 others(37): Show c.-521+17183_-521+17198delAAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239488714	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0021 a0001c0001t0020g0021	1	116	0.0086	-16	c.-52 others(35): Show c.-520-3973_-520-3958delAAAAAAAAAAAAAAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar

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