Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
CNRIP1_chr2_68288010_68324949	68305274	ATGTGTGT others(9): Show ATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0264 a0001c0003t0004g0264	1	424	0.0024	-16	c.331 others(35): Show c.331-11264_331-11249delCACACACACACACACA	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2		chr2	TogoVar
CNST_chr1_246561456_246673595	246571685	ATTTACTT others(9): Show ATTTACTTATTTTAGAG	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0172 a0001c0001t0002g0172	1	320	0.0031	-16	c.-52 others(33): Show c.-52+5023_-52+5038delTTTACTTATTTTAGAG	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		chr1	TogoVar
CNST_chr1_246561456_246673595	246585666	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02976.hp2 HG03209.hp1 others(3): Show HG02647.hp1 HG02976.hp2 HG03209.hp1 NA18950.hp2 NA18962.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0020	a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0002g0188 others(3): Show a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0002g0188 a0001c0001t0002g0190 a0001c0001t0005g0023 a0001c0001t0020g0024	6	320	0.0188	-16	c.-51 others(33): Show c.-51-5815_-51-5800delACACACACACACACAC	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10	INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTD1_chr17_42793861_42816587	42801533	ATATATAT others(9): Show ATATATATATATATAAT	A A	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0050 a0002c0002t0001g0050	1	306	0.0033	-16	c.170 others(33): Show c.170-2086_170-2071delTATATATATATATAAT	CNTD1	ENSG00000176563.10	transcript	ENST00000588408.6	protein_coding	1/6		chr17	TogoVar
CNTFR_chr9_34546433_34594724	34555935	GCCATCTC others(9): Show GCCATCTCCCTCCCCCA	G G	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0095 a0001c0001t0001g0095	1	402	0.0025	-16	c.768 others(31): Show c.768+304_768+319delTGGGGGAGGGAGATGG	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding	7/9		chr9	TogoVar
CNTLN_chr9_17130040_17508923	17237354	TACACACA others(9): Show TACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02886.hp1 HG00597.hp1 HG02886.hp1	a0001 a0003 a0001 a0003	a0001c0004 a0003c0002 a0001c0004 a0003c0002	a0001c0004t0002 a0003c0002t0001 a0001c0004t0002 a0003c0002t0001	a0001c0004t0002g0002 a0003c0002t0001g0125 a0001c0004t0002g0002 a0003c0002t0001g0125	2	218	0.0092	-16	c.849 others(31): Show c.849+803_849+818delACACACACACACACAC	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	5/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17248656	AATGCTGT others(9): Show AATGCTGTTTTATGTAT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG02895.hp1 others(2): Show HG01109.hp1 HG02109.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1	a0011 a0013 a0011 a0013	a0011c0015 a0013c0019 a0011c0015 a0013c0019	a0011c0015t0002 a0013c0019t0002 a0011c0015t0002 a0013c0019t0002	a0011c0015t0002g0213 a0011c0015t0002g0214 a0011c0015t0002g0215 others(2): Show a0011c0015t0002g0213 a0011c0015t0002g0214 a0011c0015t0002g0215 a0013c0019t0002g0119 a0013c0019t0002g0120	5	218	0.0229	-16	c.849 others(35): Show c.849+12071_849+12086delGCTGTTTTATGTATAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	5/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17274453	ATATCTAT others(9): Show ATATCTATCTATCTATC	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 NA18612.hp2 HG00621.hp1 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0167 a0001c0001t0001g0175 a0001c0001t0001g0167 a0001c0001t0001g0175	2	218	0.0092	-16	c.983 others(31): Show c.983+623_983+638delCTATCTATCTATCTAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17274495	ATCTATCT others(9): Show ATCTATCTATGTATCTT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG01109.hp1 HG02109.hp1	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0002 a0013c0019t0002	a0013c0019t0002g0119 a0013c0019t0002g0120 a0013c0019t0002g0119 a0013c0019t0002g0120	2	218	0.0092	-16	c.983 others(31): Show c.983+639_983+654delGTATCTTTCTATCTAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17295993	AGAGAGTG others(9): Show AGAGAGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02109.hp1 HG01109.hp1 HG02109.hp1	a0013 a0013	a0013c0019 a0013c0019	a0013c0019t0002 a0013c0019t0002	a0013c0019t0002g0119 a0013c0019t0002g0120 a0013c0019t0002g0119 a0013c0019t0002g0120	2	218	0.0092	-16	c.984 others(33): Show c.984-2195_984-2180delAGAGTGTGTGTGTGTG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17302105	CACACACA others(9): Show CACACACACACACACAG	C C	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0001 a0002c0008t0001	a0002c0008t0001g0035 a0002c0008t0001g0035	1	218	0.0046	-16	c.114 others(35): Show c.1146+3766_1146+3781delACAGACACACACACAC	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	7/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17318838	TTCCATCC others(9): Show TTCCATCCATCCATCCA	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00738.hp2 HG01070.hp1 others(17): Show HG00408.hp1 HG00738.hp2 HG01070.hp1 HG01074.hp2 HG01168.hp1 HG01934.hp1 HG01975.hp2 HG01978.hp2 HG02148.hp2 HG02293.hp2 HG03239.hp1 HG03492.hp2 HG03704.hp1 HG04204.hp2 HG06807.hp1 NA18949.hp2 NA19011.hp1 NA19066.hp1 NA19084.hp2 NA20300.hp2	a0001 a0002 a0015 a0001 a0002 a0015	a0001c0014 a0002c0006 a0002c0008 others(2): Show a0001c0014 a0002c0006 a0002c0008 a0002c0013 a0015c0018	a0001c0014t0001 a0002c0006t0001 a0002c0006t0002 others(5): Show a0001c0014t0001 a0002c0006t0001 a0002c0006t0002 a0002c0006t0003 a0002c0008t0001 a0002c0008t0009 a0002c0013t0001 a0015c0018t0001	a0001c0014t0001g0038 a0002c0006t0001g0029 a0002c0006t0001g0030 others(17): Show a0001c0014t0001g0038 a0002c0006t0001g0029 a0002c0006t0001g0030 a0002c0006t0001g0031 a0002c0006t0001g0033 a0002c0006t0001g0041 a0002c0006t0001g0044 a0002c0006t0001g0076 a0002c0006t0002g0032 a0002c0006t0003g0036 a0002c0008t0001g0026 a0002c0008t0001g0027 a0002c0008t0001g0035 a0002c0008t0001g0037 a0002c0008t0001g0039 a0002c0008t0001g0040 a0002c0008t0009g0034 a0002c0013t0001g0045 a0015c0018t0001g0042 a0015c0018t0001g0043	20	218	0.0917	-16	c.134 others(35): Show c.1341+9612_1341+9627delCCATCCATCCATCCAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17325374	ATGTATGT others(9): Show ATGTATGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00597.hp2 HG00639.hp1 others(25): Show HG00544.hp2 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp2 HG01243.hp1 HG01255.hp1 HG01928.hp2 HG02132.hp2 HG02615.hp2 HG02622.hp1 HG02647.hp1 HG02735.hp1 HG02922.hp1 HG02970.hp1 HG03130.hp2 HG03225.hp1 HG03453.hp1 HG03471.hp1 HG03516.hp1 HG03540.hp1 HG03834.hp1 NA18984.hp2 NA18989.hp1 NA19003.hp1 NA19062.hp1 NA19064.hp2 NA19240.hp2	a0001 a0004 a0008 others(3): Show a0001 a0004 a0008 a0009 a0012 a0019	a0001c0030 a0004c0003 a0004c0020 others(5): Show a0001c0030 a0004c0003 a0004c0020 a0008c0009 a0009c0010 a0012c0038 a0012c0039 a0019c0040	a0001c0030t0002 a0004c0003t0001 a0004c0003t0002 others(10): Show a0001c0030t0002 a0004c0003t0001 a0004c0003t0002 a0004c0003t0003 a0004c0003t0006 a0004c0003t0009 a0004c0020t0005 a0008c0009t0002 a0008c0009t0008 a0009c0010t0002 a0012c0038t0001 a0012c0039t0003 a0019c0040t0002	a0001c0030t0002g0048 a0004c0003t0001g0135 a0004c0003t0001g0136 others(25): Show a0001c0030t0002g0048 a0004c0003t0001g0135 a0004c0003t0001g0136 a0004c0003t0001g0139 a0004c0003t0001g0140 a0004c0003t0001g0146 a0004c0003t0001g0149 a0004c0003t0001g0178 a0004c0003t0001g0179 a0004c0003t0001g0189 a0004c0003t0001g0199 a0004c0003t0001g0217 a0004c0003t0002g0148 a0004c0003t0002g0173 a0004c0003t0002g0181 a0004c0003t0002g0188 a0004c0003t0003g0137 a0004c0003t0006g0198 a0004c0003t0009g0134 a0004c0020t0005g0145 a0008c0009t0002g0186 a0008c0009t0002g0187 a0008c0009t0002g0208 a0008c0009t0008g0185 a0009c0010t0002g0049 a0012c0038t0001g0151 a0012c0039t0003g0150 a0019c0040t0002g0147	28	218	0.1284	-16	c.134 others(35): Show c.1342-5254_1342-5239delATGTGTGTGTGTGTGT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17353179	CTCCTGGC others(9): Show CTCCTGGCCTCAAGCGA	C C	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01192.hp1 HG02257.hp1 others(1): Show HG01074.hp1 HG01192.hp1 HG02257.hp1 HG03453.hp2	a0010 a0010	a0010c0012 a0010c0012	a0010c0012t0002 a0010c0012t0003 a0010c0012t0002 a0010c0012t0003	a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 others(1): Show a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 a0010c0012t0003g0025	4	218	0.0184	-16	c.188 others(37): Show c.1886+10740_1886+10755delGGCCTCAAGCGATCCT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	12/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17483668	GATTTCTC others(9): Show GATTTCTCAAAGAGGCA	G G	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0005 a0001c0004t0001g0005	1	218	0.0046	-16	c.385 others(33): Show c.3856-625_3856-610delTTTCTCAAAGAGGCAA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	23/25	INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40707046	GCACACAC others(9): Show GCACACACACACACACA	G G	intron_variant intron_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0089 a0001c0002t0001g0089	1	230	0.0044	-16	c.-77 others(35): Show c.-77+14482_-77+14497delACACACACACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40830791	GTATATAT others(9): Show GTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp1 HG02895.hp2 HG02897.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0004t0007g0003 a0001c0004t0007g0004	2	230	0.0087	-16	c.-76 others(35): Show c.-76-77537_-76-77522delTATATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40872208	TTGTTTGT others(9): Show TTGTTTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01169.hp1 HG01515.hp2 others(13): Show HG01106.hp1 HG01169.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG02055.hp2 HG02257.hp1 HG02486.hp1 HG02615.hp2 HG02886.hp2 HG03139.hp1 HG03195.hp1 NA18953.hp1 NA18964.hp2 NA18972.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0014 a0001c0001t0026	a0001c0001t0001g0188 a0001c0001t0003g0023 a0001c0001t0003g0084 others(13): Show a0001c0001t0001g0188 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0007g0002 a0001c0001t0014g0074 a0001c0001t0026g0190	16	230	0.0696	-16	c.-76 others(35): Show c.-76-36145_-76-36130delTTGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947774	TATATATA others(9): Show TATATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 NA19043.hp1 HG02055.hp1 NA19043.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0019 a0001c0003t0003 a0001c0003t0019	a0001c0003t0003g0065 a0001c0003t0019g0056 a0001c0003t0003g0065 a0001c0003t0019g0056	2	230	0.0087	-16	c.168 others(35): Show c.1683+3606_1683+3621delTATATATACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947776	TATATATA others(9): Show TATATATACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00438.hp1 others(12): Show HG00280.hp1 HG00323.hp1 HG00438.hp1 HG00642.hp1 HG01099.hp1 HG01106.hp2 HG01346.hp2 HG01361.hp1 HG02280.hp1 HG02300.hp1 HG02717.hp1 HG03834.hp2 NA18957.hp1 NA18959.hp2 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0003 a0003c0008 a0001c0003 a0003c0008	a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 others(3): Show a0001c0003t0002 a0001c0003t0003 a0001c0003t0005 a0001c0003t0011 a0001c0003t0020 a0003c0008t0002	a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0005g0070 others(12): Show a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0005g0070 a0001c0003t0005g0071 a0001c0003t0005g0072 a0001c0003t0005g0082 a0001c0003t0005g0104 a0001c0003t0005g0155 a0001c0003t0005g0178 a0001c0003t0005g0191 a0001c0003t0005g0193 a0001c0003t0011g0199 a0001c0003t0011g0227 a0001c0003t0020g0165 a0003c0008t0002g0143	15	230	0.0652	-16	c.168 others(35): Show c.1683+3608_1683+3623delTATATACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947778	TATATACA others(9): Show TATATACACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0108 a0001c0003t0002g0108	1	230	0.0044	-16	c.168 others(35): Show c.1683+3610_1683+3625delTATACACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40950097	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp2 others(30): Show HG00140.hp2 HG00280.hp2 HG00408.hp2 HG01070.hp1 HG01074.hp2 HG01106.hp1 HG01123.hp1 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02818.hp2 HG03139.hp2 HG03239.hp1 HG03704.hp1 HG04115.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18950.hp1 NA18970.hp1 NA18984.hp2 NA19012.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0012 others(1): Show a0001c0001 a0001c0002 a0001c0012 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0012t0021 a0005c0010t0002	a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0049 others(30): Show a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0049 a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0188 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0096 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0209 a0001c0001t0003g0010 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0018g0048 a0001c0002t0001g0022 a0001c0012t0021g0204 a0005c0010t0002g0026	33	230	0.1435	-16	c.168 others(35): Show c.1683+5958_1683+5973delGTGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	TTATATAT others(9): Show TTATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp2 HG00408.hp2 others(45): Show HG00140.hp2 HG00280.hp2 HG00408.hp2 HG01070.hp1 HG01074.hp2 HG01123.hp1 HG01123.hp2 HG01175.hp1 HG01256.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01517.hp2 HG01981.hp2 HG02004.hp1 HG02015.hp1 HG02027.hp1 HG02145.hp2 HG02572.hp2 HG02895.hp1 HG03041.hp2 HG03225.hp2 HG03704.hp1 HG03834.hp1 HG04115.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18943.hp1 NA18944.hp2 NA18950.hp1 NA18953.hp2 NA18957.hp2 NA18959.hp1 NA18970.hp1 NA18974.hp2 NA18983.hp2 NA18984.hp2 NA19006.hp2 NA19010.hp1 NA19012.hp1 NA19043.hp1 NA19062.hp1 NA19083.hp2 NA20129.hp1 NA20129.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0012 a0001c0001t0018 a0001c0002t0001 a0001c0003t0003 a0001c0003t0016 a0001c0005t0002 a0005c0010t0002	a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 others(45): Show a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0101 a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0100 a0001c0001t0002g0110 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0146 a0001c0001t0002g0153 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0002g0220 a0001c0001t0003g0010 a0001c0001t0003g0120 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0018g0048 a0001c0002t0001g0022 a0001c0002t0001g0090 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0016g0226 a0001c0005t0002g0062 a0001c0005t0002g0081 a0001c0005t0002g0173 a0001c0005t0002g0207 a0005c0010t0002g0026	48	230	0.2087	-16	c.180 others(35): Show c.1805-5701_1805-5686delATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23	INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40977770	TGTTTTGT others(9): Show TGTTTTGTTTTGTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0016 a0001c0003t0016	a0001c0003t0016g0226 a0001c0003t0016g0226	1	230	0.0044	-16	c.180 others(35): Show c.1805-3138_1805-3123delGTTTTGTTTTGTTTTG	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		chr12	TogoVar
CNTN2_chr1_205038212_205083289	205048910	CGTGTGTG others(9): Show CGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0316 a0001c0001t0002g0316	1	380	0.0026	-16	c.-86 others(33): Show c.-86-4155_-86-4140delGTGTGTGTGTGTGTGT	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22	INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN2_chr1_205038212_205083289	205069005	TTTTGTTT others(9): Show TTTTGTTTGTTTGTTTG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG00323.hp2 others(54): Show HG00099.hp1 HG00323.hp1 HG00323.hp2 HG00544.hp1 HG00639.hp2 HG00733.hp1 HG01069.hp1 HG01099.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01168.hp1 HG01169.hp2 HG01192.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp2 HG01346.hp1 HG01358.hp2 HG01433.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG02004.hp2 HG02055.hp1 HG02109.hp2 HG02145.hp2 HG02257.hp2 HG02280.hp2 HG02300.hp1 HG02486.hp1 HG02647.hp2 HG02738.hp2 HG03017.hp1 HG03471.hp2 HG03486.hp2 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03831.hp1 NA18612.hp2 NA18948.hp2 NA18951.hp2 NA18966.hp2 NA18967.hp1 NA18983.hp1 NA19011.hp1 NA19030.hp1 NA19043.hp2 NA19079.hp2 NA19240.hp2 NA20300.hp2 NA20752.hp2 NA20805.hp2 homoSapiens_chm13v2.hp1	a0001 a0004 a0007 others(1): Show a0001 a0004 a0007 a0011	a0001c0001 a0001c0012 a0004c0005 others(2): Show a0001c0001 a0001c0012 a0004c0005 a0007c0014 a0011c0021	a0001c0001t0003 a0001c0001t0011 a0001c0001t0018 others(9): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0018 a0001c0001t0022 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0012t0003 a0004c0005t0005 a0004c0005t0046 a0007c0014t0005 a0011c0021t0026	a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0024 others(44): Show a0001c0001t0003g0008 a0001c0001t0003g0009 a0001c0001t0003g0024 a0001c0001t0003g0025 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0049 a0001c0001t0003g0132 a0001c0001t0003g0202 a0001c0001t0003g0277 a0001c0001t0003g0280 a0001c0001t0003g0286 a0001c0001t0003g0287 a0001c0001t0003g0289 a0001c0001t0003g0290 a0001c0001t0003g0291 a0001c0001t0003g0294 a0001c0001t0003g0295 a0001c0001t0003g0297 a0001c0001t0003g0298 a0001c0001t0003g0300 a0001c0001t0003g0301 a0001c0001t0003g0302 a0001c0001t0003g0303 a0001c0001t0003g0305 a0001c0001t0003g0306 a0001c0001t0003g0309 a0001c0001t0003g0317 a0001c0001t0011g0013 a0001c0001t0011g0070 a0001c0001t0011g0080 a0001c0001t0011g0081 a0001c0001t0011g0276 a0001c0001t0018g0279 a0001c0001t0018g0292 a0001c0001t0022g0133 a0001c0001t0023g0288 a0001c0001t0024g0160 a0001c0001t0025g0082 a0001c0012t0003g0045 a0001c0012t0003g0206 a0001c0012t0003g0307 a0004c0005t0005g0032 a0004c0005t0046g0032 a0007c0014t0005g0308 a0011c0021t0026g0278	57	380	0.1500	-16	c.212 others(33): Show c.2126-461_2126-446delTTTGTTTGTTTGTTTG	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	16/22	INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATATA others(9): Show GATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02129.hp1 HG02965.hp2 others(4): Show HG02083.hp2 HG02129.hp1 HG02965.hp2 HG03486.hp1 NA18906.hp2 NA19030.hp1 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0011 a0001c0001 a0001c0002 a0004c0011	a0001c0001t0002 a0001c0001t0003 a0001c0001t0014 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0014 a0001c0002t0002 a0001c0002t0012 a0004c0011t0002	a0001c0001t0002g0038 a0001c0001t0003g0061 a0001c0001t0014g0051 others(4): Show a0001c0001t0002g0038 a0001c0001t0003g0061 a0001c0001t0014g0051 a0001c0002t0002g0044 a0001c0002t0012g0011 a0004c0011t0002g0045 a0004c0011t0002g0071	7	174	0.0402	-16	c.251 others(33): Show c.2518-315_2518-300delATATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74339892	CAGATAGA others(9): Show CAGATAGATAGATAGAT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0136 a0001c0001t0004g0136	1	174	0.0058	-16	c.136 others(35): Show c.1365-3250_1365-3235delATCTATCTATCTATCT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74344397	GTTTTTTT others(9): Show GTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02145.hp1 HG02559.hp1 others(2): Show HG01952.hp1 HG02145.hp1 HG02559.hp1 HG03098.hp2 HG03579.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0008 a0001c0009 others(1): Show a0001c0001 a0001c0008 a0001c0009 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0008t0002 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0008t0002 a0001c0009t0004 a0003c0003t0002	a0001c0001t0001g0099 a0001c0001t0002g0072 a0001c0008t0002g0068 others(2): Show a0001c0001t0001g0099 a0001c0001t0002g0072 a0001c0008t0002g0068 a0001c0009t0004g0103 a0003c0003t0002g0078	5	174	0.0287	-16	c.136 others(35): Show c.1365-7755_1365-7740delAAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22		chr3	TogoVar
CNTN3_chr3_74257568_74619659	74460772	CATATATA others(9): Show CATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02922.hp2 NA20300.hp1 HG02615.hp2 HG02922.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0022 a0003c0003t0002 a0003c0003t0007 a0001c0001t0022 a0003c0003t0002 a0003c0003t0007	a0001c0001t0022g0013 a0003c0003t0002g0079 a0003c0003t0007g0020 a0001c0001t0022g0013 a0003c0003t0002g0079 a0003c0003t0007g0020	3	174	0.0172	-16	c.358 others(35): Show c.358+25668_358+25683delATATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22		chr3	TogoVar
CNTN4_chr3_2093866_3062959	2120393	ATATATAT others(9): Show ATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0025 a0001c0025	a0001c0025t0001 a0001c0025t0001	a0001c0025t0001g0100 a0001c0025t0001g0100	1	116	0.0086	-16	c.-14 others(37): Show c.-145+19756_-145+19771delATATATATATATTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2383736	TCTCTCTT others(9): Show TCTCTCTTCTCCCTCTC	T T	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0002 a0001c0006t0002	a0001c0006t0002g0060 a0001c0006t0002g0060	1	116	0.0086	-16	c.-89 others(35): Show c.-89+44525_-89+44540delTTCTCCCTCTCCTCTC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400250	AAGCTTGT others(9): Show AAGCTTGTTTCTGTGCT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0006 a0001c0004t0006	a0001c0004t0006g0068 a0001c0004t0006g0068	1	116	0.0086	-16	c.-89 others(35): Show c.-89+61019_-89+61034delGCTTGTTTCTGTGCTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2405595	GTAGATAG others(9): Show GTAGATAGATAGATAGA	G G	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0024 a0001c0024	a0001c0024t0015 a0001c0024t0015	a0001c0024t0015g0057 a0001c0024t0015g0057	1	116	0.0086	-16	c.-89 others(35): Show c.-89+66390_-89+66405delATAGATAGATAGATAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2547230	ATATTTAT others(9): Show ATATTTATTTATTTATT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02602.hp2 HG02738.hp1 HG01261.hp1 HG02602.hp2 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0007 a0001c0002 a0001c0003 a0001c0007	a0001c0002t0001 a0001c0003t0001 a0001c0007t0004 a0001c0002t0001 a0001c0003t0001 a0001c0007t0004	a0001c0002t0001g0038 a0001c0003t0001g0037 a0001c0007t0004g0066 a0001c0002t0001g0038 a0001c0003t0001g0037 a0001c0007t0004g0066	3	116	0.0259	-16	c.-88 others(35): Show c.-88-24152_-88-24137delATTTATTTATTTATTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2591352	CTTTTTTT others(9): Show CTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0115 a0001c0001t0005g0115	1	116	0.0086	-16	c.55+ others(33): Show c.55+19809_55+19824delTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2647380	CATAAATA others(9): Show CATAAATAAATAAATAA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(66): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01243.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp2 HG01261.hp1 HG01361.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01978.hp1 HG02074.hp1 HG02132.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp1 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02683.hp2 HG02717.hp1 HG02717.hp2 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp2 HG03139.hp2 HG03209.hp2 HG03239.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03516.hp2 HG03540.hp1 HG03654.hp1 HG03831.hp1 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18990.hp2 NA19043.hp1 NA19043.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0007 a0009	a0001c0001 a0001c0002 a0001c0003 others(18): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0020 a0001c0021 a0001c0022 a0001c0024 a0001c0025 a0002c0014 a0002c0015 a0002c0017 a0003c0019 a0007c0018 a0009c0027	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(36): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0010 a0001c0006t0002 a0001c0007t0003 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0013t0007 a0001c0020t0002 a0001c0021t0002 a0001c0022t0003 a0001c0024t0015 a0001c0025t0001 a0002c0014t0001 a0002c0015t0003 a0002c0017t0008 a0003c0019t0002 a0007c0018t0003 a0009c0027t0001	a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 others(66): Show a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0001g0049 a0001c0001t0001g0099 a0001c0001t0002g0030 a0001c0001t0002g0055 a0001c0001t0002g0074 a0001c0001t0002g0086 a0001c0001t0003g0006 a0001c0001t0003g0008 a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0004g0042 a0001c0001t0005g0018 a0001c0001t0005g0019 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0001t0009g0052 a0001c0002t0001g0021 a0001c0002t0001g0029 a0001c0002t0001g0088 a0001c0002t0001g0108 a0001c0002t0001g0110 a0001c0002t0003g0024 a0001c0002t0003g0114 a0001c0002t0004g0017 a0001c0002t0005g0002 a0001c0002t0005g0003 a0001c0002t0007g0009 a0001c0003t0001g0037 a0001c0003t0001g0075 a0001c0003t0001g0094 a0001c0003t0002g0107 a0001c0003t0003g0015 a0001c0003t0011g0113 a0001c0004t0001g0020 a0001c0004t0001g0036 a0001c0004t0001g0106 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0004t0002g0064 a0001c0004t0006g0044 a0001c0005t0001g0092 a0001c0005t0001g0096 a0001c0005t0001g0104 a0001c0005t0006g0010 a0001c0005t0006g0032 a0001c0005t0010g0001 a0001c0006t0002g0026 a0001c0006t0002g0051 a0001c0006t0002g0060 a0001c0007t0003g0034 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0011 a0001c0010t0003g0077 a0001c0013t0007g0056 a0001c0020t0002g0082 a0001c0021t0002g0025 a0001c0022t0003g0083 a0001c0024t0015g0057 a0001c0025t0001g0100 a0002c0014t0001g0016 a0002c0015t0003g0103 a0002c0017t0008g0067 a0003c0019t0002g0031 a0007c0018t0003g0062 a0009c0027t0001g0007	69	116	0.5948	-16	c.55+ others(33): Show c.55+75846_55+75861delAATAAATAAATAAATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2932800	CTTTATTT others(9): Show CTTTATTTATTTATTTA	C C	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02132.hp1 HG02523.hp1 others(5): Show HG02074.hp1 HG02132.hp1 HG02523.hp1 HG02615.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0005 a0001c0003t0001 a0001c0009t0004	a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0002g0030 others(5): Show a0001c0001t0001g0012 a0001c0001t0001g0033 a0001c0001t0002g0030 a0001c0001t0002g0086 a0001c0001t0003g0101 a0001c0002t0005g0002 a0001c0003t0001g0014 a0001c0009t0004g0005	8	116	0.0690	-16	c.135 others(35): Show c.1358+7046_1358+7061delTTTATTTATTTATTTA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2983213	CAAAAAAA others(9): Show CAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03041.hp1 HG03453.hp1 HG02647.hp1 HG03041.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0033 a0001c0001t0001g0059 a0001c0002t0001g0027 a0001c0001t0001g0033 a0001c0001t0001g0059 a0001c0002t0001g0027	3	116	0.0259	-16	c.135 others(35): Show c.1359-5105_1359-5090delAAAAAAAAAAAAAAAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99063507	CATAAATA others(9): Show CATAAATAAATAAATAA	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00735.hp1 HG00735.hp2 others(18): Show HG00733.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01099.hp1 HG01123.hp1 HG01243.hp2 HG01934.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02602.hp2 HG02735.hp1 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02965.hp1 NA18939.hp2 NA19000.hp1 NA19043.hp1 NA20300.hp2	a0001 a0003 a0004 others(5): Show a0001 a0003 a0004 a0005 a0006 a0007 a0011 a0012	a0001c0001 a0003c0003 a0003c0011 others(6): Show a0001c0001 a0003c0003 a0003c0011 a0004c0004 a0005c0005 a0006c0006 a0007c0007 a0011c0009 a0012c0013	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(18): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0003c0003t0002 a0003c0011t0019 a0004c0004t0002 a0004c0004t0013 a0004c0004t0020 a0005c0005t0003 a0006c0006t0009 a0006c0006t0011 a0006c0006t0014 a0007c0007t0023 a0011c0009t0005 a0012c0013t0008	a0001c0001t0001g0053 a0001c0001t0003g0060 a0001c0001t0004g0010 others(18): Show a0001c0001t0001g0053 a0001c0001t0003g0060 a0001c0001t0004g0010 a0001c0001t0005g0014 a0001c0001t0006g0032 a0001c0001t0009g0063 a0001c0001t0011g0062 a0001c0001t0012g0030 a0001c0001t0015g0064 a0003c0003t0002g0027 a0003c0011t0019g0059 a0004c0004t0002g0041 a0004c0004t0013g0050 a0004c0004t0020g0024 a0005c0005t0003g0045 a0006c0006t0009g0042 a0006c0006t0011g0033 a0006c0006t0014g0058 a0007c0007t0023g0046 a0011c0009t0005g0056 a0012c0013t0008g0031	21	66	0.3182	-16	c.-21 others(37): Show c.-210+42267_-210+42282delTAAATAAATAAATAAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99178314	CCACACAC others(9): Show CCACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0014 a0001c0001t0005g0014	1	66	0.0152	-16	c.-20 others(39): Show c.-209-146993_-209-146978delCACACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99236453	CACACACT others(9): Show CACACACTCACACACAA	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01081.hp2 NA19043.hp1 HG00733.hp1 HG01081.hp2 NA19043.hp1	a0001 a0011 a0001 a0011	a0001c0001 a0011c0009 a0001c0001 a0011c0009	a0001c0001t0009 a0001c0001t0010 a0011c0009t0005 a0001c0001t0009 a0001c0001t0010 a0011c0009t0005	a0001c0001t0009g0063 a0001c0001t0010g0047 a0011c0009t0005g0056 a0001c0001t0009g0063 a0001c0001t0010g0047 a0011c0009t0005g0056	3	66	0.0455	-16	c.-20 others(37): Show c.-209-88886_-209-88871delTCACACACAAACACAC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99284600	GGTGTGTG others(9): Show GGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01496.hp1 HG02109.hp1 others(2): Show HG01081.hp1 HG01496.hp1 HG02109.hp1 HG06807.hp1 NA19000.hp1	a0002 a0005 a0006 a0002 a0005 a0006	a0002c0002 a0005c0005 a0006c0006 a0002c0002 a0005c0005 a0006c0006	a0002c0002t0021 a0005c0005t0010 a0005c0005t0018 others(2): Show a0002c0002t0021 a0005c0005t0010 a0005c0005t0018 a0006c0006t0013 a0006c0006t0014	a0002c0002t0021g0055 a0005c0005t0010g0006 a0005c0005t0018g0028 others(2): Show a0002c0002t0021g0055 a0005c0005t0010g0006 a0005c0005t0018g0028 a0006c0006t0013g0025 a0006c0006t0014g0058	5	66	0.0758	-16	c.-20 others(37): Show c.-209-40700_-209-40685delTGTGTGTGTGTGTGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99422516	TTTTATAT others(9): Show TTTTATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02004.hp2 HG02886.hp2 HG02004.hp2 HG02886.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0020 a0001c0001t0001 a0004c0004t0020	a0001c0001t0001g0004 a0004c0004t0020g0024 a0001c0001t0001g0004 a0004c0004t0020g0024	2	66	0.0303	-16	c.-71 others(35): Show c.-71+97034_-71+97049delTTATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99422518	TTATATAT others(9): Show TTATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01243.hp1 HG03041.hp1 others(4): Show HG00733.hp2 HG01243.hp1 HG03041.hp1 HG03471.hp2 NA19000.hp1 NA19070.hp2 NA20300.hp1	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0009	a0001c0001 a0002c0002 a0006c0006 others(1): Show a0001c0001 a0002c0002 a0006c0006 a0009c0012	a0001c0001t0004 a0001c0001t0005 a0001c0001t0014 others(4): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0014 a0002c0002t0004 a0002c0002t0022 a0006c0006t0014 a0009c0012t0008	a0001c0001t0004g0029 a0001c0001t0005g0048 a0001c0001t0014g0016 others(4): Show a0001c0001t0004g0029 a0001c0001t0005g0048 a0001c0001t0014g0016 a0002c0002t0004g0039 a0002c0002t0022g0013 a0006c0006t0014g0058 a0009c0012t0008g0026	7	66	0.1061	-16	c.-71 others(35): Show c.-71+97062_-71+97077delATATATATATATATAT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	2/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99598359	TCTCTCTC others(9): Show TCTCTCTCTCTCTCTCC	T T	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp2 HG02965.hp1 others(5): Show HG02723.hp1 HG02723.hp2 HG02965.hp1 HG02976.hp1 HG03041.hp2 HG03130.hp2 NA20300.hp1 NA20300.hp2	a0001 a0003 a0006 others(1): Show a0001 a0003 a0006 a0012	a0001c0001 a0003c0003 a0006c0006 others(1): Show a0001c0001 a0003c0003 a0006c0006 a0012c0013	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0010 a0003c0003t0007 a0006c0006t0011 a0012c0013t0008	a0001c0001t0001g0008 a0001c0001t0004g0044 a0001c0001t0005g0048 others(5): Show a0001c0001t0001g0008 a0001c0001t0004g0044 a0001c0001t0005g0048 a0001c0001t0006g0040 a0001c0001t0010g0023 a0003c0003t0007g0034 a0006c0006t0011g0033 a0012c0013t0008g0031	8	66	0.1212	-16	c.55+ others(33): Show c.55+42103_55+42118delCTCCCTCTCTCTCTCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99684880	TAATTGTT others(9): Show TAATTGTTGGAAAAAAC	T T	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01099.hp2 HG02109.hp2 others(3): Show HG00738.hp1 HG01099.hp2 HG02109.hp2 HG02886.hp2 HG02965.hp2 NA19043.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0003 a0002c0002t0003 a0002c0002t0008 others(1): Show a0001c0001t0003 a0002c0002t0003 a0002c0002t0008 a0004c0004t0020	a0001c0001t0003g0021 a0001c0001t0003g0022 a0002c0002t0003g0036 others(3): Show a0001c0001t0003g0021 a0001c0001t0003g0022 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0008g0019 a0004c0004t0020g0024	6	66	0.0909	-16	c.55+ others(35): Show c.55+128614_55+128629delTTGTTGGAAAAAACAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	3/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99857062	CCCTCCCT others(9): Show CCCTCCCTCCCTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0054 a0001c0001t0001g0054	1	66	0.0152	-16	c.577 others(35): Show c.577+11805_577+11820delCCTCCCTCTCTTCCTC	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	6/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99934933	TATATATA others(9): Show TATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01243.hp1 HG02895.hp1 HG00738.hp2 HG01243.hp1 HG02895.hp1	a0002 a0004 a0002 a0004	a0002c0002 a0004c0004 a0002c0002 a0004c0004	a0002c0002t0004 a0002c0002t0005 a0004c0004t0002 a0002c0002t0004 a0002c0002t0005 a0004c0004t0002	a0002c0002t0004g0039 a0002c0002t0005g0015 a0004c0004t0002g0041 a0002c0002t0004g0039 a0002c0002t0005g0015 a0004c0004t0002g0041	3	66	0.0455	-16	c.673 others(35): Show c.673+18786_673+18801delTATATATATATATACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24	INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100094765	AAAGGAAG others(9): Show AAAGGAAGGAAGGAAGG	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01243.hp1 HG01081.hp1 HG01243.hp1	a0002 a0005 a0002 a0005	a0002c0002 a0005c0005 a0002c0002 a0005c0005	a0002c0002t0004 a0005c0005t0018 a0002c0002t0004 a0005c0005t0018	a0002c0002t0004g0039 a0005c0005t0018g0028 a0002c0002t0004g0039 a0005c0005t0018g0028	2	66	0.0303	-16	c.158 others(37): Show c.1580+20510_1580+20525delGGAAGGAAGGAAGGAA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24	INFO_REALIGN_3_PRIME	chr11	TogoVar

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