Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PTBP3_chr9_112213435_112338619	112249065	TAATGCTT others(10): Show TAATGCTTTAAAGTATTG	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG03098.hp2 HG02559.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0258 a0001c0001t0009g0291 a0001c0001t0009g0258 a0001c0001t0009g0291	2	342	0.0059	-17	c.802 others(34): Show c.802+1847_802+1863delCAATACTTTAAAGCATT	PTBP3	ENSG00000119314.16	transcript	ENST00000374257.6	protein_coding	7/13			chr9	TogoVar
PTCD1_chr7_99411739_99443798	99432588	AGCGCAGG others(10): Show AGCGCAGGTCCTCCGTAT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG03130.hp2 HG03453.hp2 others(1): Show HG02451.hp2 HG03130.hp2 HG03453.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0022 a0001c0001t0039 a0001c0001t0006 a0001c0001t0022 a0001c0001t0039	a0001c0001t0006g0052 a0001c0001t0006g0163 a0001c0001t0022g0165 others(1): Show a0001c0001t0006g0052 a0001c0001t0006g0163 a0001c0001t0022g0165 a0001c0001t0039g0164	4	380	0.0105	-17	c.594 others(32): Show c.594+673_594+689delATACGGAGGACCTGCGC	PTCD1	ENSG00000106246.18	transcript	ENST00000292478.9	protein_coding	3/7			chr7	TogoVar
PTCH1_chr9_95437980_95514266	95440487	AAGGAGGG others(10): Show AAGGAGGGAGAAGGGGGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG02970.hp2 HG02976.hp2 others(4): Show HG01884.hp2 HG02970.hp2 HG02976.hp2 HG03195.hp1 HG03516.hp2 NA19030.hp2 NA20905.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0002 a0003c0005t0003 a0003c0005t0006 a0003c0005t0002 a0003c0005t0003 a0003c0005t0006	a0003c0005t0002g0217 a0003c0005t0003g0007 a0003c0005t0003g0078 others(3): Show a0003c0005t0002g0217 a0003c0005t0003g0007 a0003c0005t0003g0078 a0003c0005t0003g0151 a0003c0005t0006g0211 a0003c0005t0006g0230	7	284	0.0247	-17	c.58 others(28): Show c.5889_*5905delCCCCCCTTCTCCCTCCT	PTCH1	ENSG00000185920.19	transcript	ENST00000331920.11	protein_coding		2492		chr9	TogoVar
PTCH1_chr9_95437980_95514266	95504022	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0003 a0003c0005t0003	a0003c0005t0003g0078 a0003c0005t0003g0078	1	284	0.0035	-17	c.394 others(34): Show c.394+2368_394+2384delTTTTTTTTTTTTTTTTT	PTCH1	ENSG00000185920.19	transcript	ENST00000331920.11	protein_coding	2/23			chr9	TogoVar
PTCH1_chr9_95437980_95521971	95440487	AAGGAGGG others(10): Show AAGGAGGGAGAAGGGGGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG02976.hp2 HG03195.hp1 others(3): Show HG01884.hp2 HG02976.hp2 HG03195.hp1 HG03516.hp2 NA19030.hp2 NA20905.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0002 a0003c0005t0001 a0003c0005t0002	a0003c0005t0001g0228 a0003c0005t0002g0079 a0003c0005t0002g0128 others(3): Show a0003c0005t0001g0228 a0003c0005t0002g0079 a0003c0005t0002g0128 a0003c0005t0002g0129 a0003c0005t0002g0206 a0003c0005t0002g0225	6	278	0.0216	-17	c.58 others(28): Show c.5889_*5905delCCCCCCTTCTCCCTCCT	PTCH1	ENSG00000185920.19	transcript	ENST00000437951.6	protein_coding		2492		chr9	TogoVar
PTCH1_chr9_95437980_95521971	95504022	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0002 a0003c0005t0002	a0003c0005t0002g0079 a0003c0005t0002g0079	1	278	0.0036	-17	c.391 others(34): Show c.391+2368_391+2384delTTTTTTTTTTTTTTTTT	PTCH1	ENSG00000185920.19	transcript	ENST00000437951.6	protein_coding	2/23			chr9	TogoVar
PTCHD4_chr6_47851673_48116197	47961401	CATGCCTC others(10): Show CATGCCTCAGCTTTCCAA	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0095 a0001c0001t0095	a0001c0001t0095g0140 a0001c0001t0095g0140	1	182	0.0055	-17	c.898 others(36): Show c.898+47216_898+47232delTTGGAAAGCTGAGGCAT	PTCHD4	ENSG00000244694.8	transcript	ENST00000339488.9	protein_coding	4/4			chr6	TogoVar
PTCHD4_chr6_47851673_48116197	48079970	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00408.hp2 HG00597.hp2 others(30): Show HG00099.hp1 HG00408.hp2 HG00597.hp2 HG01081.hp2 HG01106.hp2 HG01256.hp1 HG01257.hp1 HG01258.hp2 HG02055.hp2 HG02056.hp2 HG02135.hp2 HG02257.hp1 HG02572.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02738.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp1 HG03486.hp2 HG03492.hp1 HG03540.hp1 HG03579.hp1 HG03831.hp1 HG04115.hp1 NA18906.hp1 NA18906.hp2 NA18978.hp2 NA18979.hp1 NA18985.hp2 NA19003.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0003c0006 a0004c0009	a0001c0001t0050 a0001c0001t0053 a0001c0001t0054 others(23): Show a0001c0001t0050 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0066 a0001c0002t0003 a0001c0002t0019 a0001c0002t0020 a0001c0002t0021 a0001c0002t0051 a0001c0002t0052 a0001c0002t0058 a0001c0002t0059 a0001c0002t0060 a0001c0002t0061 a0001c0002t0064 a0001c0002t0065 a0001c0002t0067 a0001c0002t0070 a0001c0003t0011 a0001c0003t0049 a0001c0003t0069 a0003c0006t0062 a0004c0009t0011	a0001c0001t0050g0101 a0001c0001t0053g0096 a0001c0001t0054g0112 others(29): Show a0001c0001t0050g0101 a0001c0001t0053g0096 a0001c0001t0054g0112 a0001c0001t0055g0017 a0001c0001t0056g0117 a0001c0001t0057g0111 a0001c0001t0066g0105 a0001c0002t0003g0013 a0001c0002t0003g0106 a0001c0002t0003g0107 a0001c0002t0003g0108 a0001c0002t0003g0109 a0001c0002t0019g0097 a0001c0002t0019g0099 a0001c0002t0020g0102 a0001c0002t0021g0014 a0001c0002t0021g0015 a0001c0002t0051g0098 a0001c0002t0052g0018 a0001c0002t0058g0016 a0001c0002t0059g0103 a0001c0002t0060g0118 a0001c0002t0061g0178 a0001c0002t0064g0011 a0001c0002t0065g0012 a0001c0002t0067g0115 a0001c0002t0070g0092 a0001c0003t0011g0001 a0001c0003t0049g0110 a0001c0003t0069g0083 a0003c0006t0062g0104 a0004c0009t0011g0116	33	182	0.1813	-17	c.-96 others(38): Show c.-969-10061_-969-10045delAAAAAAAAAAAAAAAAA	PTCHD4	ENSG00000244694.8	transcript	ENST00000339488.9	protein_coding	1/4			chr6	TogoVar
PTCRA_chr6_42911053_42930838	42929267	AGGACTTT others(10): Show AGGACTTTGCCATAGGTC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0009	1	412	0.0024	-17	c.35 others(28): Show c.3586_*3602delGGACTTTGCCATAGGTC	PTCRA	ENSG00000171611.10	transcript	ENST00000304672.6	protein_coding		3430		chr6	TogoVar
PTEN_chr10_87858625_87976930	87903162	CTGCAGAA others(10): Show CTGCAGAACAGCAAATAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01070.hp1 HG01081.hp1 others(5): Show HG00323.hp2 HG01070.hp1 HG01081.hp1 HG01123.hp2 HG04199.hp1 NA18987.hp2 NA19011.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0092 a0001c0001t0094 others(3): Show a0001c0001t0024 a0001c0001t0092 a0001c0001t0094 a0001c0001t0095 a0001c0001t0100 a0001c0001t0110	a0001c0001t0024g0188 a0001c0001t0024g0190 a0001c0001t0024g0192 others(5): Show a0001c0001t0024g0188 a0001c0001t0024g0190 a0001c0001t0024g0192 a0001c0001t0092g0141 a0001c0001t0094g0189 a0001c0001t0095g0103 a0001c0001t0100g0191 a0001c0001t0110g0187	8	322	0.0248	-17	c.164 others(34): Show c.164+9074_164+9090delAGAACAGCAAATATTGC	PTEN	ENSG00000171862.15	transcript	ENST00000371953.8	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr10	TogoVar
PTGER3_chr1_70965782_71052816	70981323	CTTTCTTT others(10): Show CTTTCTTTCTTTCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0168 a0001c0001t0001g0168	1	372	0.0027	-17	c.107 others(36): Show c.1078-6952_1078-6936delAGAAAGAAAGAAAGAAA	PTGER3	ENSG00000050628.21	transcript	ENST00000306666.10	protein_coding	2/3			chr1	TogoVar
PTGER3_chr1_70965782_71052816	70981375	CTTTCTTT others(10): Show CTTTCTTTCTTTCTTTCT	C C	intron_variant intron_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0027	1	372	0.0027	-17	c.107 others(36): Show c.1078-7004_1078-6988delAGAAAGAAAGAAAGAAA	PTGER3	ENSG00000050628.21	transcript	ENST00000306666.10	protein_coding	2/3			chr1	TogoVar
PTGER3_chr1_70965782_71052816	70981382	TCTTTCTT others(10): Show TCTTTCTTTCTTTCCTTC	T T	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	372	0.0027	-17	c.107 others(36): Show c.1078-7011_1078-6995delGAAGGAAAGAAAGAAAG	PTGER3	ENSG00000050628.21	transcript	ENST00000306666.10	protein_coding	2/3			chr1	TogoVar
PTGES3L_chr17_42963103_42985080	42965994	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG02896.hp1 HG03130.hp2 HG02145.hp2 HG02896.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0157 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0157 a0001c0001t0001g0165 a0001c0001t0001g0166	3	336	0.0089	-17	c.31 others(28): Show c.3137_*3153delTTTTTTTTTTTTTTTTT	PTGES3L	ENSG00000267060.7	transcript	ENST00000591916.7	protein_coding		2108		chr17	TogoVar
PTGR2_chr14_73846831_73890726	73882799	CCTTTTTT others(10): Show CCTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0134 a0001c0001t0011g0134	1	420	0.0024	-17	c.979 others(32): Show c.979+362_979+378delCTTTTTTTTTTTTTTTT	PTGR2	ENSG00000140043.12	transcript	ENST00000555661.6	protein_coding	9/9			chr14	TogoVar
PTGR2_chr14_73846831_73890726	73882800	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0229 a0001c0002t0001g0229	1	420	0.0024	-17	c.979 others(32): Show c.979+384_979+400delTTTTTTTTTTTTTTTTT	PTGR2	ENSG00000140043.12	transcript	ENST00000555661.6	protein_coding	9/9		INFO_REALIGN_3_PRIME	chr14	TogoVar
PTH2R_chr2_208401792_208499506	208441082	AGCCAATT others(10): Show AGCCAATTGCAAGACCAG	A A	intron_variant intron_variant	MODIFIER	NA19076.hp2 NA19076.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0066 a0001c0002t0002g0066	1	294	0.0034	-17	c.412 others(34): Show c.412-1278_412-1262delAATTGCAAGACCAGGCC	PTH2R	ENSG00000144407.10	transcript	ENST00000272847.7	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTK2B_chr8_27320552_27464386	27350989	AAATATAT others(10): Show AAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp2 NA18991.hp1 NA19074.hp2 others(2): Show HG00544.hp2 NA18991.hp1 NA19074.hp2 NA19085.hp1 NA19087.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0160 others(2): Show a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0160 a0001c0002t0001g0161 a0001c0002t0001g0162	5	328	0.0152	-17	c.-38 others(36): Show c.-38+25310_-38+25326delATATATATATATATATA	PTK2B	ENSG00000120899.18	transcript	ENST00000346049.10	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr8	TogoVar
PTK2B_chr8_27320552_27464386	27350991	ATATATAT others(10): Show ATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00673.hp1 HG01109.hp2 others(13): Show HG00408.hp2 HG00673.hp1 HG01109.hp2 HG01169.hp2 HG01255.hp1 HG01261.hp1 HG01515.hp2 HG01993.hp2 HG02055.hp1 HG02258.hp2 HG02809.hp2 HG03669.hp1 HG04115.hp1 NA18906.hp1 NA18999.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0004 a0001c0001 a0002c0003 a0002c0004	a0001c0001t0003 a0002c0003t0002 a0002c0004t0002 a0001c0001t0003 a0002c0003t0002 a0002c0004t0002	a0001c0001t0003g0143 a0001c0001t0003g0184 a0001c0001t0003g0273 others(13): Show a0001c0001t0003g0143 a0001c0001t0003g0184 a0001c0001t0003g0273 a0002c0003t0002g0069 a0002c0003t0002g0236 a0002c0003t0002g0239 a0002c0003t0002g0240 a0002c0003t0002g0247 a0002c0003t0002g0256 a0002c0003t0002g0257 a0002c0003t0002g0321 a0002c0004t0002g0224 a0002c0004t0002g0225 a0002c0004t0002g0245 a0002c0004t0002g0248 a0002c0004t0002g0298	16	328	0.0488	-17	c.-38 others(36): Show c.-38+25311_-38+25327delTATATATATATATATAT	PTK2B	ENSG00000120899.18	transcript	ENST00000346049.10	protein_coding	1/30			chr8	TogoVar
PTK2_chr8_140652900_141006282	140820102	TTTTTTTT others(10): Show TTTTTTTTTTTTTTTTTA	T T	intron_variant intron_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0112 a0001c0001t0001g0112	1	290	0.0035	-17	c.649 others(34): Show c.649-1099_649-1083delTAAAAAAAAAAAAAAAA	PTK2	ENSG00000169398.20	transcript	ENST00000696786.1	protein_coding	8/35			chr8	TogoVar
PTK7_chr6_43071314_43166715	43157341	TATATATA others(10): Show TATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01123.hp1 HG02486.hp1 others(2): Show HG01074.hp1 HG01123.hp1 HG02486.hp1 HG02698.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0008 a0001c0002t0001 a0001c0001t0001 a0001c0001t0008 a0001c0002t0001	a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0008g0177 others(2): Show a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0008g0177 a0001c0002t0001g0145 a0001c0002t0001g0182	5	272	0.0184	-17	c.272 others(36): Show c.2722-1475_2722-1459delATATATATATATATATA	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19			chr6	TogoVar
PTK7_chr6_43071314_43166715	43157343	TATATATA others(10): Show TATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00544.hp2 HG00597.hp1 others(20): Show HG00323.hp2 HG00544.hp2 HG00597.hp1 HG00639.hp1 HG01069.hp1 HG01069.hp2 HG01123.hp2 HG01358.hp2 HG01981.hp1 HG02280.hp2 HG02300.hp2 HG02698.hp1 HG02895.hp1 HG02922.hp2 HG04184.hp2 NA18954.hp1 NA18977.hp1 NA18977.hp2 NA18984.hp1 NA18992.hp2 NA19030.hp1 NA19080.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0022 a0001c0001 a0001c0002 a0001c0022	a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0009 a0001c0022t0001	a0001c0001t0001g0066 a0001c0001t0001g0173 a0001c0002t0001g0074 others(20): Show a0001c0001t0001g0066 a0001c0001t0001g0173 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0001g0090 a0001c0002t0001g0091 a0001c0002t0001g0109 a0001c0002t0001g0112 a0001c0002t0001g0123 a0001c0002t0001g0129 a0001c0002t0001g0134 a0001c0002t0001g0151 a0001c0002t0001g0159 a0001c0002t0001g0180 a0001c0002t0001g0181 a0001c0002t0001g0185 a0001c0002t0001g0207 a0001c0002t0001g0215 a0001c0002t0001g0216 a0001c0002t0001g0217 a0001c0002t0001g0267 a0001c0002t0009g0233 a0001c0022t0001g0155	23	272	0.0846	-17	c.272 others(36): Show c.2722-1473_2722-1457delATATATATATATATATA	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19			chr6	TogoVar
PTK7_chr6_43071314_43166715	43157345	TATATATA others(10): Show TATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG01358.hp1 others(9): Show HG01167.hp2 HG01169.hp2 HG01358.hp1 HG01943.hp2 HG01975.hp1 HG02055.hp1 HG02895.hp2 HG02897.hp1 HG03669.hp2 HG03710.hp1 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005	a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0170 others(9): Show a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0170 a0001c0001t0001g0187 a0001c0001t0001g0190 a0001c0001t0001g0194 a0001c0002t0001g0103 a0001c0002t0001g0152 a0001c0002t0001g0161 a0001c0002t0003g0149 a0001c0002t0005g0137 a0001c0002t0005g0138	12	272	0.0441	-17	c.272 others(36): Show c.2722-1471_2722-1455delATATATATATATATATA	PTK7	ENSG00000112655.16	transcript	ENST00000230419.9	protein_coding	17/19			chr6	TogoVar
PTN_chr7_137222341_137348733	137277900	TGAGATGA others(10): Show TGAGATGATAGATAGATA	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00558.hp2 HG00733.hp1 others(26): Show HG00408.hp1 HG00558.hp2 HG00733.hp1 HG00741.hp1 HG00741.hp2 HG01099.hp2 HG01243.hp2 HG01255.hp2 HG01515.hp1 HG01891.hp2 HG01978.hp2 HG02145.hp1 HG02258.hp2 HG02451.hp2 HG02559.hp2 HG02723.hp1 HG02738.hp2 HG02886.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp2 HG03540.hp2 HG03942.hp1 HG03942.hp2 HG06807.hp1 NA18979.hp1 NA18983.hp1 NA19088.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0025 others(26): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0025 a0001c0001t0001g0060 a0001c0001t0001g0065 a0001c0001t0001g0079 a0001c0001t0001g0102 a0001c0001t0001g0104 a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0151 a0001c0001t0001g0154 a0001c0001t0001g0159 a0001c0001t0001g0173 a0001c0001t0001g0183 a0001c0001t0001g0186 a0001c0001t0001g0205 a0001c0001t0001g0207 a0001c0001t0001g0236 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0289 a0001c0001t0002g0143 a0001c0001t0002g0185 a0001c0001t0002g0215	29	296	0.0980	-17	c.-1- others(34): Show c.-1-22943_-1-22927delTATCTATCTATCATCTC	PTN	ENSG00000105894.13	transcript	ENST00000348225.7	protein_coding	1/4			chr7	TogoVar
PTN_chr7_137222341_137348733	137346767	CTGCTACA others(10): Show CTGCTACAGCCTCCTGAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0090 a0001c0001t0002g0090	1	296	0.0034	-17	c.-33 others(28): Show c.-3347_-3331delCTCAGGAGGCTGTAGCA	PTN	ENSG00000105894.13	transcript	ENST00000348225.7	protein_coding		3035		chr7	TogoVar
PTOV1_chr19_49846159_49865742	49861541	CAGGGGTC others(10): Show CAGGGGTCAGGGGAGGAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0008 a0008	a0008c0012 a0008c0012	a0008c0012t0001 a0008c0012t0001	a0008c0012t0001g0003 a0008c0012t0001g0003	1	426	0.0024	-17	c.12 others(28): Show c.1263_*1279delAGGGGTCAGGGGAGGAG	PTOV1	ENSG00000104960.15	transcript	ENST00000391842.6	protein_coding		800		chr19	TogoVar
PTP4A2_chr1_31901421_31943368	31908135	TTATATTA others(10): Show TTATATTATATATATATA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00099.hp1 HG01346.hp1 HG01515.hp2 others(6): Show HG00099.hp1 HG01346.hp1 HG01515.hp2 HG01517.hp1 HG02300.hp2 HG03209.hp2 HG03834.hp1 NA19004.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0051 a0001c0001t0111 others(1): Show a0001c0001t0006 a0001c0001t0051 a0001c0001t0111 a0001c0001t0112	a0001c0001t0006g0168 a0001c0001t0006g0178 a0001c0001t0006g0215 others(6): Show a0001c0001t0006g0168 a0001c0001t0006g0178 a0001c0001t0006g0215 a0001c0001t0006g0255 a0001c0001t0006g0310 a0001c0001t0051g0204 a0001c0001t0051g0206 a0001c0001t0111g0298 a0001c0001t0112g0187	9	354	0.0254	-17	c.70 others(26): Show c.700_*716delTATATATATATAATATA	PTP4A2	ENSG00000184007.22	transcript	ENST00000647444.2	protein_coding	6/6	700		chr1	TogoVar
PTP4A3_chr8_141387021_141437454	141400257	TGCCCACC others(10): Show TGCCCACCACTGTGCCCG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp1 HG02109.hp2 others(5): Show HG01884.hp1 HG02055.hp1 HG02109.hp2 HG02922.hp1 HG03486.hp1 HG03516.hp2 HG06807.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(2): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0031 a0001c0001t0039	a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0006g0041 others(5): Show a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0006g0041 a0001c0001t0006g0042 a0001c0001t0007g0070 a0001c0001t0007g0071 a0001c0001t0031g0069 a0001c0001t0039g0043	8	323	0.0248	-17	c.-85 others(36): Show c.-854+8180_-854+8196delCACTGTGCCCGGCCCAC	PTP4A3	ENSG00000184489.13	transcript	ENST00000521578.6	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr8	TogoVar
PTPN12_chr7_77532295_77645069	77641210	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp2 NA19090.hp1 HG03688.hp2 NA19090.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0293 a0003c0003t0001g0299 a0001c0001t0001g0293 a0003c0003t0001g0299	2	310	0.0065	-17	c.19 others(28): Show c.1931_*1947delTTTTTTTTTTTTTTTTT	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding		1142		chr7	TogoVar
PTPN14_chr1_214343700_214556602	214431372	TAGGTACT others(10): Show TAGGTACTACAAAGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG01496.hp1 HG01891.hp1 others(12): Show HG00408.hp1 HG01496.hp1 HG01891.hp1 HG02083.hp1 HG02155.hp1 HG02165.hp2 HG02273.hp1 HG02615.hp1 HG02922.hp1 HG02965.hp1 HG03017.hp1 HG03098.hp1 HG04228.hp2 NA18999.hp2 NA19084.hp2	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0009c0027	a0001c0001t0004 a0001c0001t0011 a0001c0001t0024 others(11): Show a0001c0001t0004 a0001c0001t0011 a0001c0001t0024 a0001c0001t0038 a0001c0001t0045 a0001c0001t0051 a0001c0001t0118 a0001c0001t0135 a0001c0001t0158 a0001c0001t0181 a0001c0002t0001 a0002c0003t0086 a0002c0003t0182 a0009c0027t0148	a0001c0001t0004g0073 a0001c0001t0011g0038 a0001c0001t0024g0211 others(12): Show a0001c0001t0004g0073 a0001c0001t0011g0038 a0001c0001t0024g0211 a0001c0001t0038g0138 a0001c0001t0045g0021 a0001c0001t0051g0165 a0001c0001t0118g0040 a0001c0001t0135g0193 a0001c0001t0158g0220 a0001c0001t0181g0267 a0001c0002t0001g0032 a0001c0002t0001g0111 a0002c0003t0086g0026 a0002c0003t0182g0270 a0009c0027t0148g0234	15	272	0.0552	-17	c.345 others(36): Show c.345-16663_345-16647delCACACTTTGTAGTACCT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	3/18			chr1	TogoVar
PTPN18_chr2_130351056_130380405	130361549	TCTTTCTT others(10): Show TCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0074 a0002c0002t0005g0074	1	380	0.0026	-17	c.414 others(34): Show c.414+1913_414+1929delTTTCTTTCCTTTCTTTC	PTPN18	ENSG00000072135.13	transcript	ENST00000175756.10	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN21_chr14_88460778_88560007	88554972	CGCGGCCG others(10): Show CGCGGCCGGAGCAGCGGG	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG00323.hp2 others(83): Show HG00099.hp2 HG00280.hp2 HG00323.hp2 HG00438.hp2 HG00544.hp1 HG00609.hp2 HG00639.hp1 HG00673.hp1 HG00733.hp1 HG00738.hp2 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp2 HG01168.hp1 HG01255.hp2 HG01358.hp1 HG01361.hp1 HG01515.hp2 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01952.hp1 HG01978.hp2 HG02015.hp2 HG02040.hp1 HG02109.hp1 HG02132.hp1 HG02135.hp2 HG02165.hp1 HG02257.hp1 HG02280.hp1 HG02293.hp1 HG02523.hp1 HG02818.hp1 HG03098.hp1 HG03139.hp2 HG03225.hp1 HG03490.hp1 HG03492.hp1 HG03516.hp2 HG03704.hp1 HG03927.hp2 HG04184.hp2 HG04204.hp2 HG04228.hp2 NA18747.hp1 NA18940.hp2 NA18943.hp1 NA18944.hp2 NA18945.hp1 NA18947.hp2 NA18948.hp1 NA18951.hp1 NA18955.hp1 NA18956.hp1 NA18957.hp1 NA18959.hp2 NA18966.hp2 NA18967.hp1 NA18968.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp2 NA18979.hp2 NA18982.hp2 NA18983.hp2 NA18988.hp1 NA18990.hp2 NA18994.hp2 NA19002.hp1 NA19004.hp1 NA19005.hp1 NA19011.hp1 NA19043.hp1 NA19054.hp2 NA19062.hp2 NA19063.hp1 NA19066.hp2 NA19079.hp1 NA19081.hp1 NA19086.hp2 NA19087.hp2 NA20129.hp2 NA20805.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0009	a0001c0001 a0002c0002 a0002c0011 others(4): Show a0001c0001 a0002c0002 a0002c0011 a0002c0020 a0003c0003 a0004c0013 a0009c0021	a0001c0001t0043 a0002c0002t0002 a0002c0002t0010 others(10): Show a0001c0001t0043 a0002c0002t0002 a0002c0002t0010 a0002c0002t0014 a0002c0002t0015 a0002c0002t0016 a0002c0002t0022 a0002c0002t0044 a0002c0011t0002 a0002c0020t0002 a0003c0003t0045 a0004c0013t0042 a0009c0021t0010	a0001c0001t0043g0269 a0002c0002t0002g0261 a0002c0002t0002g0262 others(83): Show a0001c0001t0043g0269 a0002c0002t0002g0261 a0002c0002t0002g0262 a0002c0002t0002g0268 a0002c0002t0002g0270 a0002c0002t0002g0271 a0002c0002t0002g0272 a0002c0002t0002g0273 a0002c0002t0002g0274 a0002c0002t0002g0275 a0002c0002t0002g0276 a0002c0002t0002g0278 a0002c0002t0002g0279 a0002c0002t0002g0280 a0002c0002t0002g0281 a0002c0002t0002g0282 a0002c0002t0002g0283 a0002c0002t0002g0284 a0002c0002t0002g0285 a0002c0002t0002g0286 a0002c0002t0002g0288 a0002c0002t0002g0289 a0002c0002t0002g0294 a0002c0002t0002g0296 a0002c0002t0002g0297 a0002c0002t0002g0298 a0002c0002t0002g0299 a0002c0002t0002g0300 a0002c0002t0002g0301 a0002c0002t0002g0302 a0002c0002t0002g0303 a0002c0002t0002g0305 a0002c0002t0002g0306 a0002c0002t0002g0307 a0002c0002t0002g0308 a0002c0002t0002g0309 a0002c0002t0002g0310 a0002c0002t0002g0311 a0002c0002t0002g0312 a0002c0002t0002g0313 a0002c0002t0002g0316 a0002c0002t0002g0317 a0002c0002t0002g0318 a0002c0002t0002g0319 a0002c0002t0002g0320 a0002c0002t0002g0321 a0002c0002t0002g0322 a0002c0002t0002g0323 a0002c0002t0002g0324 a0002c0002t0002g0325 a0002c0002t0002g0326 a0002c0002t0002g0329 a0002c0002t0002g0330 a0002c0002t0002g0331 a0002c0002t0002g0332 a0002c0002t0002g0333 a0002c0002t0002g0335 a0002c0002t0002g0336 a0002c0002t0002g0337 a0002c0002t0002g0339 a0002c0002t0002g0340 a0002c0002t0002g0341 a0002c0002t0002g0342 a0002c0002t0002g0343 a0002c0002t0010g0277 a0002c0002t0010g0290 a0002c0002t0010g0291 a0002c0002t0010g0292 a0002c0002t0014g0258 a0002c0002t0014g0259 a0002c0002t0014g0260 a0002c0002t0015g0327 a0002c0002t0015g0328 a0002c0002t0015g0338 a0002c0002t0016g0264 a0002c0002t0016g0265 a0002c0002t0016g0266 a0002c0002t0022g0267 a0002c0002t0022g0287 a0002c0002t0044g0315 a0002c0011t0002g0295 a0002c0011t0002g0314 a0002c0020t0002g0293 a0003c0003t0045g0334 a0004c0013t0042g0263 a0009c0021t0010g0304	86	348	0.2471	-17	c.-54 others(26): Show c.-541_-525delCCCGCTGCTCCGGCCGC	PTPN21	ENSG00000070778.13	transcript	ENST00000556564.6	protein_coding	1/19	4556		chr14	TogoVar
PTPN2_chr18_12787152_12889237	12873267	CTCTCCCC others(10): Show CTCTCCCCACGGTCTCCG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01106.hp1 HG01515.hp2 others(11): Show HG00140.hp2 HG01106.hp1 HG01515.hp2 HG01517.hp1 HG01891.hp2 HG01975.hp1 HG02257.hp1 HG02451.hp1 HG02622.hp2 HG02723.hp2 HG02818.hp1 HG03688.hp2 HG06807.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0139 others(11): Show a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0139 a0001c0001t0001g0143 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0159 a0001c0001t0011g0083 a0001c0001t0011g0084	14	370	0.0378	-17	c.69+ others(34): Show c.69+10789_69+10805delCGGAGACCGTGGGGAGA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN2_chr18_12787152_12889237	12873284	GTCTCCCC others(10): Show GTCTCCCCACGGTCTCCC	G G	intron_variant intron_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0110 a0001c0001t0004g0110	1	370	0.0027	-17	c.69+ others(34): Show c.69+10772_69+10788delGGGAGACCGTGGGGAGA	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	1/8			chr18	TogoVar
PTPN3_chr9_109370700_109503307	109382668	TTCTGCCC others(10): Show TTCTGCCCAGTGATCTCC	T T	intron_variant intron_variant	MODIFIER	HG00597.hp2 NA19084.hp2 HG00597.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0172 a0001c0001t0001g0243 a0001c0001t0001g0172 a0001c0001t0001g0243	2	290	0.0069	-17	c.238 others(34): Show c.2383-238_2383-222delGGAGATCACTGGGCAGA	PTPN3	ENSG00000070159.14	transcript	ENST00000374541.4	protein_coding	23/25			chr9	TogoVar
PTPN4_chr2_119754922_119989899	119844299	CCCGGACG others(10): Show CCCGGACGGGGCGGCTGG	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00741.hp2 HG01346.hp1 others(1): Show HG00738.hp1 HG00741.hp2 HG01346.hp1 HG03486.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0030 a0002c0003t0015 a0002c0003t0027 a0001c0001t0030 a0002c0003t0015 a0002c0003t0027	a0001c0001t0030g0033 a0002c0003t0015g0024 a0002c0003t0015g0025 others(1): Show a0001c0001t0030g0033 a0002c0003t0015g0024 a0002c0003t0015g0025 a0002c0003t0027g0026	4	252	0.0159	-17	c.139 others(36): Show c.139-18215_139-18199delACGGGGCGGCTGGCCGG	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN5_chr11_18722928_18796798	18775212	CTCTCTTT others(10): Show CTCTCTTTCACTTTTTAG	C C	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0336 a0001c0001t0001g0336	1	388	0.0026	-17	c.-11 others(36): Show c.-113-3158_-113-3142delCTAAAAAGTGAAAGAGA	PTPN5	ENSG00000110786.18	transcript	ENST00000358540.7	protein_coding	1/14			chr11	TogoVar
PTPRA_chr20_2868481_3043669	2885534	GGACAACC others(10): Show GGACAACCAAATCTTATA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp1 NA18906.hp1 HG01891.hp1 NA18906.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0169 a0002c0005t0001g0170 a0002c0005t0001g0169 a0002c0005t0001g0170	2	356	0.0056	-17	c.-12 others(38): Show c.-129+11775_-129+11791delGACAACCAAATCTTATA	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	1/23			chr20	TogoVar
PTPRA_chr20_2868481_3043669	2910583	TTTTTTGT others(10): Show TTTTTTGTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02559.hp2 HG03130.hp2 others(3): Show HG02280.hp1 HG02559.hp2 HG03130.hp2 HG03516.hp2 NA20129.hp2 NA21309.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0139 a0002c0005t0001g0140 a0002c0005t0001g0141 others(3): Show a0002c0005t0001g0139 a0002c0005t0001g0140 a0002c0005t0001g0141 a0002c0005t0001g0142 a0002c0005t0001g0143 a0002c0005t0001g0144	6	356	0.0169	-17	c.-12 others(38): Show c.-128-12618_-128-12602delGTTTTTTTTTTGTTTTT	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRB_chr12_70510870_70642429	70547049	TGAACCCA others(10): Show TGAACCCAAAGGTATCTG	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01258.hp2 others(28): Show HG00735.hp1 HG00735.hp2 HG01258.hp2 HG01978.hp1 HG02027.hp2 HG02083.hp2 HG02135.hp2 HG02300.hp1 HG02602.hp2 HG02683.hp1 HG02698.hp2 HG03490.hp2 HG03831.hp2 HG03927.hp1 HG04184.hp1 NA18941.hp2 NA18943.hp1 NA18953.hp1 NA18954.hp1 NA18962.hp2 NA18983.hp1 NA18984.hp2 NA18991.hp2 NA19002.hp2 NA19003.hp2 NA19060.hp2 NA19079.hp1 NA19087.hp1 NA20300.hp2 NA20752.hp2 NA20905.hp1	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0005 a0006 a0010 a0013	a0001c0001 a0001c0005 a0002c0007 others(14): Show a0001c0001 a0001c0005 a0002c0007 a0002c0010 a0002c0012 a0002c0019 a0003c0014 a0004c0008 a0004c0022 a0004c0024 a0004c0032 a0004c0048 a0005c0004 a0005c0033 a0006c0015 a0010c0026 a0013c0065	a0001c0001t0004 a0001c0001t0033 a0001c0001t0034 others(17): Show a0001c0001t0004 a0001c0001t0033 a0001c0001t0034 a0001c0005t0004 a0002c0007t0004 a0002c0010t0004 a0002c0012t0035 a0002c0019t0039 a0003c0014t0004 a0004c0008t0004 a0004c0022t0004 a0004c0024t0004 a0004c0032t0004 a0004c0048t0004 a0005c0004t0004 a0005c0033t0004 a0006c0015t0004 a0006c0015t0041 a0010c0026t0004 a0013c0065t0004	a0001c0001t0004g0034 a0001c0001t0004g0127 a0001c0001t0033g0103 others(28): Show a0001c0001t0004g0034 a0001c0001t0004g0127 a0001c0001t0033g0103 a0001c0001t0034g0053 a0001c0005t0004g0032 a0001c0005t0004g0110 a0002c0007t0004g0067 a0002c0007t0004g0276 a0002c0007t0004g0295 a0002c0010t0004g0023 a0002c0010t0004g0024 a0002c0010t0004g0058 a0002c0010t0004g0288 a0002c0012t0035g0109 a0002c0019t0039g0261 a0003c0014t0004g0096 a0004c0008t0004g0159 a0004c0022t0004g0173 a0004c0024t0004g0223 a0004c0032t0004g0148 a0004c0048t0004g0175 a0005c0004t0004g0172 a0005c0004t0004g0178 a0005c0004t0004g0192 a0005c0004t0004g0211 a0005c0033t0004g0191 a0006c0015t0004g0186 a0006c0015t0004g0208 a0006c0015t0041g0215 a0010c0026t0004g0287 a0013c0065t0004g0227	31	300	0.1033	-17	c.538 others(36): Show c.5388-2403_5388-2387delCAGATACCTTTGGGTTC	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding	21/33			chr12	TogoVar
PTPRB_chr12_70510870_70642429	70640389	TGGTCTCC others(10): Show TGGTCTCCTGGACTCAAG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18946.hp2 NA18946.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0075 a0001c0002t0001g0075	1	300	0.0033	-17	c.-30 others(28): Show c.-3011_-2995delCTTGAGTCCAGGAGACC	PTPRB	ENSG00000127329.16	transcript	ENST00000334414.11	protein_coding		2961		chr12	TogoVar
PTPRD_chr9_8309246_10618002	8359122	ACAAAAAA others(10): Show ACAAAAAAAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0015 a0001c0002t0015	a0001c0002t0015g0010 a0001c0002t0015g0010	1	34	0.0294	-17	c.466 others(38): Show c.4661+16797_4661+16813delGTTTTTTTTTTTTTTTG	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8741566	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0016 a0001c0012t0016	a0001c0012t0016g0028 a0001c0012t0016g0028	1	34	0.0294	-17	c.-10 others(36): Show c.-103-7637_-103-7621delAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	8871360	AATGTGGG others(10): Show AATGTGGGGCATACACAT	A A	intron_variant intron_variant	MODIFIER	HG03834.hp2 NA19030.hp1 HG03834.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0009 a0001c0001 a0002c0009	a0001c0001t0024 a0002c0009t0006 a0001c0001t0024 a0002c0009t0006	a0001c0001t0024g0032 a0002c0009t0006g0007 a0001c0001t0024g0032 a0002c0009t0006g0007	2	34	0.0588	-17	c.-10 others(40): Show c.-103-137431_-103-137415delATGTGTATGCCCCACAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9328618	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0024 a0001c0002t0003g0024	1	34	0.0294	-17	c.-20 others(38): Show c.-203+68814_-203+68830delAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9384343	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01099.hp1 HG01243.hp1 others(4): Show HG00642.hp2 HG01099.hp1 HG01243.hp1 HG02622.hp2 HG02683.hp1 HG03225.hp1 HG03834.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0004 others(3): Show a0001c0001 a0001c0002 a0001c0004 a0001c0012 a0001c0017 a0005c0015	a0001c0001t0001 a0001c0002t0001 a0001c0002t0011 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0011 a0001c0004t0003 a0001c0012t0016 a0001c0017t0002 a0005c0015t0010	a0001c0001t0001g0006 a0001c0002t0001g0009 a0001c0002t0011g0030 others(4): Show a0001c0001t0001g0006 a0001c0002t0001g0009 a0001c0002t0011g0030 a0001c0004t0003g0001 a0001c0012t0016g0028 a0001c0017t0002g0005 a0005c0015t0010g0026	7	34	0.2059	-17	c.-20 others(38): Show c.-203+13089_-203+13105delAAAAAAAAAAAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	9911469	ATTTGTTA others(10): Show ATTTGTTATGGTTTGGGG	A A	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01109.hp1 HG01243.hp2 others(13): Show HG01099.hp1 HG01109.hp1 HG01243.hp2 HG01981.hp1 HG01981.hp2 HG02055.hp1 HG02055.hp2 HG02257.hp2 HG02622.hp1 HG02683.hp1 HG02683.hp2 HG03139.hp2 HG03225.hp1 HG03225.hp2 HG03579.hp1 NA19030.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0010 a0001c0012 a0001c0014 a0001c0017 a0003c0008	a0001c0001t0002 a0001c0001t0013 a0001c0001t0019 others(13): Show a0001c0001t0002 a0001c0001t0013 a0001c0001t0019 a0001c0001t0022 a0001c0002t0005 a0001c0002t0009 a0001c0002t0011 a0001c0003t0004 a0001c0003t0023 a0001c0004t0018 a0001c0006t0026 a0001c0010t0017 a0001c0012t0016 a0001c0014t0025 a0001c0017t0002 a0003c0008t0008	a0001c0001t0002g0018 a0001c0001t0013g0022 a0001c0001t0019g0023 others(13): Show a0001c0001t0002g0018 a0001c0001t0013g0022 a0001c0001t0019g0023 a0001c0001t0022g0012 a0001c0002t0005g0025 a0001c0002t0009g0017 a0001c0002t0011g0030 a0001c0003t0004g0027 a0001c0003t0023g0031 a0001c0004t0018g0015 a0001c0006t0026g0034 a0001c0010t0017g0016 a0001c0012t0016g0028 a0001c0014t0025g0033 a0001c0017t0002g0005 a0003c0008t0008g0003	16	34	0.4706	-17	c.-36 others(38): Show c.-368+27021_-368+27037delCCCCAAACCATAACAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	5/45			chr9	TogoVar
PTPRD_chr9_8309246_10618002	10585697	AATAGTAT others(10): Show AATAGTATACATACACAC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01109.hp2 HG01243.hp2 others(6): Show HG00642.hp2 HG01109.hp2 HG01243.hp2 HG01981.hp1 HG01981.hp2 HG02622.hp1 HG03139.hp2 HG03225.hp2 NA21309.hp2	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0003c0008 a0005c0015	a0001c0001t0001 a0001c0001t0013 a0001c0001t0019 others(6): Show a0001c0001t0001 a0001c0001t0013 a0001c0001t0019 a0001c0002t0003 a0001c0002t0005 a0001c0003t0004 a0001c0003t0023 a0003c0008t0008 a0005c0015t0010	a0001c0001t0001g0004 a0001c0001t0013g0022 a0001c0001t0019g0023 others(6): Show a0001c0001t0001g0004 a0001c0001t0013g0022 a0001c0001t0019g0023 a0001c0002t0003g0024 a0001c0002t0005g0025 a0001c0003t0004g0027 a0001c0003t0023g0031 a0003c0008t0008g0003 a0005c0015t0010g0026	9	34	0.2647	-17	c.-60 others(38): Show c.-600+26684_-600+26700delGTGTGTATGTATACTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	2/45			chr9	TogoVar
PTPRG_chr3_61556571_62302609	61866582	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0090	1	94	0.0106	-17	c.190 others(38): Show c.190+117620_190+117636delTTTTTTTTTTTTTTTTT	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	2/29		INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRG_chr3_61556571_62302609	61940652	TATTTATT others(10): Show TATTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00639.hp1 HG00735.hp2 others(21): Show HG00280.hp2 HG00639.hp1 HG00735.hp2 HG01169.hp2 HG01255.hp1 HG02027.hp1 HG02027.hp2 HG02145.hp2 HG02258.hp2 HG02300.hp2 HG02559.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG03098.hp2 HG03471.hp2 HG03540.hp2 HG03669.hp1 HG03669.hp2 HG04199.hp2 NA18998.hp1 NA19030.hp1 NA19087.hp2 NA21309.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0015 a0002c0002 others(4): Show a0001c0001 a0001c0015 a0002c0002 a0002c0003 a0003c0004 a0004c0006 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0015t0001 a0002c0002t0002 a0002c0003t0008 a0003c0004t0003 a0004c0006t0002 a0006c0007t0004	a0001c0001t0001g0009 a0001c0001t0001g0018 a0001c0001t0001g0033 others(21): Show a0001c0001t0001g0009 a0001c0001t0001g0018 a0001c0001t0001g0033 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0057 a0001c0001t0001g0074 a0001c0001t0002g0035 a0001c0001t0002g0050 a0001c0001t0002g0086 a0001c0001t0003g0012 a0001c0001t0005g0025 a0001c0001t0010g0087 a0001c0015t0001g0011 a0002c0002t0002g0046 a0002c0002t0002g0051 a0002c0002t0002g0078 a0002c0002t0002g0092 a0002c0003t0008g0016 a0002c0003t0008g0019 a0003c0004t0003g0008 a0004c0006t0002g0094 a0006c0007t0004g0060	24	94	0.2553	-17	c.191 others(36): Show c.191-48972_191-48956delATTTATTTATTTATTTA	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	2/29			chr3	TogoVar

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