Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ZRANB3_chr2_135191969_135536218	135426854	AAAAAAAA others(10): Show AAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0010 a0010	a0010c0014 a0010c0014	a0010c0014t0002 a0010c0014t0002	a0010c0014t0002g0012 a0010c0014t0002g0012	1	212	0.0047	-17	c.162 others(36): Show c.162-36051_162-36035delATATATATTTTTTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426856	AAAAAAAA others(10): Show AAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02132.hp2 NA18982.hp1 HG02132.hp2 NA18982.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0002 a0004c0006t0002	a0004c0006t0002g0033 a0004c0006t0002g0109 a0004c0006t0002g0033 a0004c0006t0002g0109	2	208	0.0096	-17	c.162 others(36): Show c.162-36053_162-36037delATATATATATTTTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426858	AAAAAAAT others(10): Show AAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0012 a0003c0004t0012	a0003c0004t0012g0001 a0003c0004t0012g0001	1	196	0.0051	-17	c.162 others(36): Show c.162-36055_162-36039delATATATATATATTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426860	AAAAATAT others(10): Show AAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA18906.hp2 NA19043.hp2 others(1): Show HG02257.hp2 NA18906.hp2 NA19043.hp2 NA21309.hp2	a0002 a0006 a0002 a0006	a0002c0002 a0006c0008 a0002c0002 a0006c0008	a0002c0002t0002 a0006c0008t0009 a0002c0002t0002 a0006c0008t0009	a0002c0002t0002g0023 a0002c0002t0002g0024 a0006c0008t0009g0081 others(1): Show a0002c0002t0002g0023 a0002c0002t0002g0024 a0006c0008t0009g0081 a0006c0008t0009g0082	4	178	0.0225	-17	c.162 others(36): Show c.162-36057_162-36041delATATATATATATATTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426862	AAATATAT others(10): Show AAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0052 a0003c0004t0002g0052	1	201	0.0050	-17	c.162 others(36): Show c.162-36059_162-36043delATATATATATATATATT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426864	ATATATAT others(10): Show ATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02486.hp1 NA20300.hp2 HG02280.hp2 HG02486.hp1 NA20300.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0192 a0002c0002t0002g0193 a0002c0002t0002g0194 a0002c0002t0002g0192 a0002c0002t0002g0193 a0002c0002t0002g0194	3	194	0.0155	-17	c.162 others(36): Show c.162-36061_162-36045delATATATATATATATATA	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135443115	CAAAAAAA others(10): Show CAAAAAAAAAAAGAAAGA	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00621.hp2 HG00639.hp1 others(28): Show HG00558.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG01175.hp2 HG01243.hp1 HG01261.hp1 HG01884.hp2 HG01978.hp2 HG02109.hp1 HG02145.hp2 HG02258.hp1 HG02486.hp2 HG02622.hp1 HG02630.hp1 HG02647.hp2 HG02922.hp1 HG02965.hp2 HG03041.hp1 HG03139.hp1 HG03209.hp2 HG03239.hp2 HG03453.hp2 HG03516.hp1 NA18747.hp1 NA18906.hp1 NA18981.hp2 NA19043.hp1 NA19084.hp2 NA19240.hp2	a0002 a0007 a0002 a0007	a0002c0003 a0002c0007 a0007c0013 a0002c0003 a0002c0007 a0007c0013	a0002c0003t0003 a0002c0003t0008 a0002c0007t0002 others(1): Show a0002c0003t0003 a0002c0003t0008 a0002c0007t0002 a0007c0013t0008	a0002c0003t0003g0056 a0002c0003t0003g0059 a0002c0003t0003g0060 others(28): Show a0002c0003t0003g0056 a0002c0003t0003g0059 a0002c0003t0003g0060 a0002c0003t0003g0061 a0002c0003t0003g0062 a0002c0003t0003g0063 a0002c0003t0003g0064 a0002c0003t0003g0065 a0002c0003t0003g0066 a0002c0003t0003g0067 a0002c0003t0003g0068 a0002c0003t0003g0069 a0002c0003t0003g0070 a0002c0003t0003g0071 a0002c0003t0003g0072 a0002c0003t0003g0073 a0002c0003t0003g0074 a0002c0003t0003g0075 a0002c0003t0003g0076 a0002c0003t0003g0077 a0002c0003t0003g0078 a0002c0003t0003g0079 a0002c0003t0003g0080 a0002c0003t0003g0103 a0002c0003t0003g0104 a0002c0003t0008g0003 a0002c0003t0008g0057 a0002c0007t0002g0106 a0002c0007t0002g0107 a0002c0007t0002g0108 a0007c0013t0008g0058	31	209	0.1483	-17	c.162 others(36): Show c.162-52312_162-52296delTCTTTCTTTTTTTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZSCAN18_chr19_58078856_58103231	58089302	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0297 a0001c0001t0001g0297	1	44	0.0227	-17	c.404 others(32): Show c.404-482_404-466delTTTTTTTTTTTTTTTTT	ZSCAN18	ENSG00000121413.13	transcript	ENST00000601144.6	protein_coding	2/6			chr19	TogoVar
ZSCAN30_chr18_35246062_35295229	35258869	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0225 a0001c0001t0001g0225	1	87	0.0115	-17	c.554 others(34): Show c.554-4505_554-4489delTTTTTTTTTTTTTTTTT	ZSCAN30	ENSG00000186814.15	transcript	ENST00000333206.10	protein_coding	3/3			chr18	TogoVar
ZSCAN32_chr16_3377085_3406004	3403150	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG02809.hp2 HG03098.hp2 others(4): Show HG02723.hp2 HG02809.hp2 HG03098.hp2 HG03195.hp1 HG03225.hp1 HG03516.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0028 a0001c0001t0002g0123 a0001c0001t0002g0127 others(3): Show a0001c0001t0002g0028 a0001c0001t0002g0123 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0243 a0001c0001t0002g0244	7	14	0.5000	-17	c.-24 others(28): Show c.-2410_-2394delAAAAAAAAAAAAAAAAA	ZSCAN32	ENSG00000140987.21	transcript	ENST00000396852.9	protein_coding		2147		chr16	TogoVar
ZSCAN5A_chr19_56216303_56319839	56223974	GGACACAG others(10): Show GGACACAGCAATCCTGTC	G G	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02723.hp1 HG02818.hp2 others(6): Show HG02647.hp2 HG02723.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG02965.hp2 HG02970.hp2 HG03579.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0007t0002 a0001c0001t0001 a0001c0007t0002	a0001c0001t0001g0183 a0001c0001t0001g0196 a0001c0001t0001g0197 others(6): Show a0001c0001t0001g0183 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0233 a0001c0001t0001g0283 a0001c0001t0001g0336 a0001c0001t0001g0338 a0001c0001t0001g0341 a0001c0007t0002g0023	9	360	0.0250	-17	c.385 others(32): Show c.385-157_385-141delGACAGGATTGCTGTGTC	ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding	3/5			chr19	TogoVar
ZSCAN9_chr6_28220275_28238487	28222427	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	330	0.0030	-17	c.-30 others(28): Show c.-3012_-2996delTTTTTTTTTTTTTTTTT	ZSCAN9	ENSG00000137185.13	transcript	ENST00000252207.10	protein_coding		2847		chr6	TogoVar
ZSWIM4_chr19_13790443_13837254	13800244	CTTTTTTT others(10): Show CTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18941.hp1 NA19088.hp2 NA18941.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0172 a0001c0001t0001g0173	2	75	0.0267	-17	c.355 others(32): Show c.355+346_355+362delTTTTTTTTTTTTTTTTT	ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
ZSWIM5_chr1_45011399_45211605	45190927	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00741.hp1 others(20): Show HG00140.hp1 HG00323.hp2 HG00741.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01256.hp1 HG01433.hp1 HG01516.hp2 HG01981.hp2 HG01993.hp2 HG02080.hp2 HG02818.hp2 HG04199.hp1 NA18944.hp2 NA18969.hp1 NA18971.hp1 NA18989.hp2 NA19000.hp2 NA19004.hp2 NA19083.hp1 NA19084.hp2	a0002 a0004 a0006 a0002 a0004 a0006	a0002c0004 a0002c0006 a0002c0013 others(2): Show a0002c0004 a0002c0006 a0002c0013 a0004c0014 a0006c0012	a0002c0004t0001 a0002c0004t0003 a0002c0004t0005 others(5): Show a0002c0004t0001 a0002c0004t0003 a0002c0004t0005 a0002c0006t0005 a0002c0006t0008 a0002c0013t0001 a0004c0014t0001 a0006c0012t0001	a0002c0004t0001g0082 a0002c0004t0001g0084 a0002c0004t0001g0085 others(20): Show a0002c0004t0001g0082 a0002c0004t0001g0084 a0002c0004t0001g0085 a0002c0004t0001g0087 a0002c0004t0001g0089 a0002c0004t0001g0090 a0002c0004t0001g0093 a0002c0004t0001g0094 a0002c0004t0001g0095 a0002c0004t0001g0096 a0002c0004t0001g0098 a0002c0004t0001g0099 a0002c0004t0003g0097 a0002c0004t0005g0083 a0002c0006t0005g0100 a0002c0006t0005g0101 a0002c0006t0005g0102 a0002c0006t0005g0103 a0002c0006t0008g0104 a0002c0006t0008g0105 a0002c0013t0001g0091 a0004c0014t0001g0086 a0006c0012t0001g0092	23	64	0.3594	-17	c.595 others(36): Show c.595+14812_595+14828delAAAAAAAAAAAAAAAAA	ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	1/13			chr1	TogoVar
ZSWIM6_chr5_61327258_61551172	61355430	AAACACAC others(10): Show AAACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0032 a0001c0003t0001g0032	1	270	0.0037	-17	c.676 others(36): Show c.676+22484_676+22500delACACACACACACACACA	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM6_chr5_61327258_61551172	61464158	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA18612.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0263 a0001c0005t0002g0263	1	60	0.0167	-17	c.677 others(34): Show c.677-8506_677-8490delTTTTTTTTTTTTTTTTT	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM7_chr17_15971560_16004704	15976067	GAAAAAAA others(10): Show GAAAAAAAAAAAAAAAAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	268	0.0037	-17	c.19 others(28): Show c.1963_*1979delTTTTTTTTTTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		492		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976130	TATATATA others(10): Show TATATATATATAAATAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp2 HG02622.hp2 HG03471.hp2 others(1): Show HG02258.hp2 HG02622.hp2 HG03471.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0011 a0001c0001t0006g0191 a0001c0001t0006g0011 a0001c0001t0006g0191	4	342	0.0117	-17	c.19 others(28): Show c.1900_*1916delTTTATTTATATATATAT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		429		chr17	TogoVar
ZWILCH_chr15_66500326_66555130	66509866	TATATCTC others(10): Show TATATCTCTTAAAAATCA	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0092 a0001c0001t0004g0092	1	408	0.0025	-17	c.105 others(32): Show c.105+977_105+993delATCTCTTAAAAATCAAT	ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
ZYG11B_chr1_52721453_52832336	52773615	ATATATAT others(10): Show ATATATATATATATTTTT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0154 a0001c0001t0060g0154	1	344	0.0029	-17	c.951 others(34): Show c.951+1843_951+1859delATATATATATATTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52796909	TATTATAT others(10): Show TATTATATATTATATATA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01069.hp2 HG01109.hp2 others(4): Show HG00735.hp2 HG01069.hp2 HG01109.hp2 HG01175.hp1 HG01192.hp1 HG01516.hp2 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0058 a0001c0001t0059 others(1): Show a0001c0001t0011 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060	a0001c0001t0011g0152 a0001c0001t0011g0153 a0001c0001t0011g0155 others(4): Show a0001c0001t0011g0152 a0001c0001t0011g0153 a0001c0001t0011g0155 a0001c0001t0011g0156 a0001c0001t0058g0150 a0001c0001t0059g0151 a0001c0001t0060g0154	7	263	0.0266	-17	c.148 others(34): Show c.1485+145_1485+161delTATATATTATATATAAT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817801	ATATATAT others(10): Show ATATATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG03195.hp2 NA19043.hp1 HG02257.hp2 HG03195.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0337 a0001c0001t0014g0338 a0001c0001t0014g0339 a0001c0001t0014g0337 a0001c0001t0014g0338 a0001c0001t0014g0339	3	344	0.0087	-17	c.204 others(36): Show c.2044+1174_2044+1190delATATATATATATATTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(10): Show ATTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0135	1	279	0.0036	-17	c.204 others(36): Show c.2044+1210_2044+1226delTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar

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