Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
FGF14_chr13_101705804_101921945	101867889	GACACACA others(11): Show GACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0073 a0001c0001t0006g0073	1	266	0.0038	-18	c.408 others(33): Show c.408+818_408+835delGTGTGTGTGTGTGTGTGT		FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4						chr13	TogoVar
FGF14_chr13_101705804_101921945	101867918	ACACACAC others(11): Show ACACACACACACACACACG	A A	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0025 a0001c0001t0061g0025	1	266	0.0038	-18	c.408 others(33): Show c.408+789_408+806delCGTGTGTGTGTGTGTGTG		FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4						chr13	TogoVar
FGF14_chr13_101705804_101921945	101910837	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02257.hp2 HG02258.hp2 HG01891.hp2 HG02257.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0016 a0001c0001t0083 a0001c0001t0001 a0001c0001t0016 a0001c0001t0083	a0001c0001t0001g0132 a0001c0001t0016g0130 a0001c0001t0083g0131 a0001c0001t0001g0132 a0001c0001t0016g0130 a0001c0001t0083g0131	3	266	0.0113	-18	c.193 others(35): Show c.193+5598_193+5615delACACACACACACACACAC		FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	1/4						chr13	TogoVar
FGF18_chr5_171414647_171462626	171449360	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03225.hp2 HG03471.hp1 HG01243.hp1 HG03225.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0355 a0001c0001t0003g0016 a0001c0001t0002g0355 a0001c0001t0003g0016	3	388	0.0077	-18	c.357 others(33): Show c.357+131_357+148delTGTGTGTGTGTGTGTGTG		FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding	4/4					INFO_REALIGN_3_PRIME	chr5	TogoVar
FGF18_chr5_171414647_171462626	171461200	AGGGGAGG others(11): Show AGGGGAGGGCAGTGGGGAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp2 HG01516.hp2 HG01517.hp2 HG01515.hp2 HG01516.hp2 HG01517.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0013 a0001c0002t0001g0149 a0001c0002t0001g0013 a0001c0002t0001g0149	3	388	0.0077	-18	c.43 others(29): Show c.4396_*4413delGGGGAGGGCAGTGGGGAG		FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding					3575		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461240	GAGGGCAG others(11): Show GAGGGCAGTGGGGAGGGGC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp2 HG01496.hp2 HG02257.hp1 others(5): Show HG01109.hp2 HG01496.hp2 HG02257.hp1 HG03225.hp2 NA18964.hp2 NA18993.hp1 NA19002.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0002t0001	a0001c0001t0001g0021 a0001c0001t0001g0256 a0001c0001t0001g0311 others(4): Show a0001c0001t0001g0021 a0001c0001t0001g0256 a0001c0001t0001g0311 a0001c0001t0002g0119 a0001c0001t0002g0355 a0001c0001t0006g0120 a0001c0002t0001g0199	8	388	0.0206	-18	c.44 others(29): Show c.4436_*4453delAGGGCAGTGGGGAGGGGC		FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding					3615		chr5	TogoVar
FGF1_chr5_142587178_142691090	142608542	CTATATAT others(11): Show CTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00423.hp2 HG00639.hp2 others(15): Show HG00280.hp2 HG00423.hp2 HG00639.hp2 HG00735.hp1 HG01496.hp1 HG02055.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG03486.hp1 HG03710.hp2 HG04204.hp2 NA18947.hp1 NA19030.hp2 NA19065.hp2 NA19070.hp2 NA19080.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 a0001c0001t0014 a0001c0001t0033	a0001c0001t0001g0083 a0001c0001t0005g0022 a0001c0001t0005g0098 others(15): Show a0001c0001t0001g0083 a0001c0001t0005g0022 a0001c0001t0005g0098 a0001c0001t0005g0106 a0001c0001t0005g0107 a0001c0001t0005g0152 a0001c0001t0005g0153 a0001c0001t0005g0225 a0001c0001t0005g0232 a0001c0001t0005g0245 a0001c0001t0005g0267 a0001c0001t0011g0067 a0001c0001t0011g0081 a0001c0001t0011g0082 a0001c0001t0011g0261 a0001c0001t0011g0281 a0001c0001t0014g0161 a0001c0001t0033g0048	18	340	0.0529	-18	c.169 others(35): Show c.169+5399_169+5416delTATATATATATATATATA		FGF1	ENSG00000113578.18	transcript	ENST00000337706.7	protein_coding	2/3						chr5	TogoVar
FGF1_chr5_142587178_142691090	142608567	TATATATA others(11): Show TATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp1 HG02615.hp1 others(5): Show HG01167.hp1 HG01169.hp1 HG02615.hp1 HG03486.hp2 NA18939.hp2 NA18989.hp2 NA19062.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 others(2): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0009 a0001c0001t0021 a0001c0001t0047	a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0007g0122 others(5): Show a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0007g0122 a0001c0001t0007g0222 a0001c0001t0009g0129 a0001c0001t0009g0262 a0001c0001t0021g0058 a0001c0001t0047g0093	8	340	0.0235	-18	c.169 others(35): Show c.169+5374_169+5391delGTATATATATATATATAT		FGF1	ENSG00000113578.18	transcript	ENST00000337706.7	protein_coding	2/3						chr5	TogoVar
FGF2_chr4_122821831_122903236	122844557	TTTTCTTT others(11): Show TTTTCTTTCTTTCTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02055.hp1 HG03209.hp1 others(1): Show HG01243.hp1 HG02055.hp1 HG03209.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0041 a0001c0001t0004 a0001c0001t0041	a0001c0001t0004g0227 a0001c0001t0004g0228 a0001c0001t0004g0229 others(1): Show a0001c0001t0004g0227 a0001c0001t0004g0228 a0001c0001t0004g0229 a0001c0001t0041g0226	4	256	0.0156	-18	c.178 others(37): Show c.178+17220_178+17237delTTTCTTTCTTTCTTTCTT		FGF2	ENSG00000138685.18	transcript	ENST00000644866.2	protein_coding	1/2					INFO_REALIGN_3_PRIME	chr4	TogoVar
FGF7_chr15_49418242_49493775	49422164	GCGCGCGC others(11): Show GCGCGCGCGCGCGCGTGCA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02735.hp2 HG02738.hp1 HG03704.hp1 others(4): Show HG02735.hp2 HG02738.hp1 HG03704.hp1 HG03831.hp2 HG04184.hp2 NA18951.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0010 a0001c0001t0008 a0001c0001t0010	a0001c0001t0008g0040 a0001c0001t0008g0290 a0001c0001t0008g0291 others(4): Show a0001c0001t0008g0040 a0001c0001t0008g0290 a0001c0001t0008g0291 a0001c0001t0008g0292 a0001c0001t0010g0287 a0001c0001t0010g0293 a0001c0001t0010g0294	7	358	0.0196	-18	c.-15 others(29): Show c.-1542_-1525delCGCGCGCGCGCGCGTGCA		FGF7	ENSG00000140285.12	transcript	ENST00000267843.9	protein_coding					1077		chr15	TogoVar
FGF9_chr13_21666073_21709498	21695069	CGTGTGTG others(11): Show CGTGTGTGTGTGTGCGTGT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02145.hp2 HG02970.hp1 others(1): Show HG01243.hp1 HG02145.hp2 HG02970.hp1 HG03139.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0032 a0001c0002t0014g0091 a0001c0002t0014g0166 a0001c0002t0014g0032 a0001c0002t0014g0091 a0001c0002t0014g0166	4	362	0.0111	-18	c.382 others(35): Show c.382-6107_382-6090delCGTGTGTGTGTGTGTGTG		FGF9	ENSG00000102678.7	transcript	ENST00000382353.6	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr13	TogoVar
FGFR1_chr8_38406143_38473635	38447098	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG03540.hp2 HG00099.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0300 a0001c0001t0003g0016 a0001c0001t0002g0300 a0001c0001t0003g0016	2	336	0.0060	-18	c.91+ others(35): Show c.91+10240_91+10257delGTGTGTGTGTGTGTGTGT		FGFR1	ENSG00000077782.23	transcript	ENST00000447712.7	protein_coding	2/17						chr8	TogoVar
FGFR2_chr10_121473332_121603444	121548245	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02647.hp1 HG02895.hp1 others(2): Show HG01261.hp1 HG02647.hp1 HG02895.hp1 HG02897.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0009 a0001c0001t0012 a0001c0001t0017 others(1): Show a0001c0001t0009 a0001c0001t0012 a0001c0001t0017 a0001c0005t0008	a0001c0001t0009g0010 a0001c0001t0009g0011 a0001c0001t0012g0158 others(2): Show a0001c0001t0009g0010 a0001c0001t0009g0011 a0001c0001t0012g0158 a0001c0001t0017g0007 a0001c0005t0008g0231	5	240	0.0208	-18	c.624 others(35): Show c.624+3027_624+3044delAAAAAAAAAAAAAAAAAA		FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	5/17						chr10	TogoVar
FGFR4_chr5_177081915_177103144	177093756	GGCCGTCA others(11): Show GGCCGTCAAGATGCTCAAA	G G	disruptive_inframe_deletion others(1): Show disruptive_inframe_deletion splice_region_variant	MODERATE	HG00738.hp2 HG00738.hp2	a0017 a0017	a0017c0023 a0017c0023	a0017c0023t0001 a0017c0023t0001	a0017c0023t0001g0094 a0017c0023t0001g0094	1	372	0.0027	-18	c.150 others(27): Show c.1502_1519delCCGTCAAGATGCTCAAAG	p.Ala others(13): Show p.Ala501_Lys506del	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding	11/18	1718/3093	1502/2409	501/802		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGGY_chr1_59292094_59767730	59573439	CATATGTG others(11): Show CATATGTGTGTGTGTATAT	C C	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	166	0.0060	-18	c.903 others(37): Show c.903+19219_903+19236delGTGTGTGTATATATATGT		FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	8/15					INFO_REALIGN_3_PRIME	chr1	TogoVar
FGGY_chr1_59292094_59767730	59661693	GTTTTGTT others(11): Show GTTTTGTTTTTGTTTTTGT	G G	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0011 a0011	a0011c0012 a0011c0012	a0011c0012t0002 a0011c0012t0002	a0011c0012t0002g0110 a0011c0012t0002g0110	1	166	0.0060	-18	c.129 others(37): Show c.1296+1428_1296+1445delTGTTTTTGTTTTTGTTTT		FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	12/15					INFO_REALIGN_3_PRIME	chr1	TogoVar
FGGY_chr1_59292094_59767730	59733446	GTTTTGTT others(11): Show GTTTTGTTTTGTTTTGTTT	G G	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02615.hp1 HG02257.hp2 HG02615.hp1	a0002 a0003 a0002 a0003	a0002c0004 a0003c0005 a0002c0004 a0003c0005	a0002c0004t0002 a0003c0005t0001 a0002c0004t0002 a0003c0005t0001	a0002c0004t0002g0104 a0003c0005t0001g0042 a0002c0004t0002g0104 a0003c0005t0001g0042	2	166	0.0121	-18	c.151 others(39): Show c.1513-24463_1513-24446delTGTTTTGTTTTGTTTTTT		FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	14/15					INFO_REALIGN_3_PRIME	chr1	TogoVar
FGGY_chr1_59292094_59767730	59753467	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18962.hp1 NA18962.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0074 a0002c0002t0001g0074	1	166	0.0060	-18	c.151 others(37): Show c.1513-4435_1513-4418delATATATATATATATATAT		FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	14/15					INFO_REALIGN_3_PRIME	chr1	TogoVar
FGL1_chr8_17859389_17900524	17875517	TTCTTTCT others(11): Show TTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01261.hp2 HG02559.hp2 others(6): Show HG01257.hp1 HG01261.hp2 HG02559.hp2 HG03139.hp2 HG03225.hp1 HG03579.hp1 NA18522.hp1 NA18612.hp2 NA18972.hp1	a0002 a0003 a0005 a0002 a0003 a0005	a0002c0002 a0003c0003 a0005c0005 a0002c0002 a0003c0003 a0005c0005	a0002c0002t0001 a0003c0003t0001 a0005c0005t0001 a0002c0002t0001 a0003c0003t0001 a0005c0005t0001	a0002c0002t0001g0104 a0003c0003t0001g0282 a0003c0003t0001g0284 others(6): Show a0002c0002t0001g0104 a0003c0003t0001g0282 a0003c0003t0001g0284 a0003c0003t0001g0288 a0003c0003t0001g0293 a0003c0003t0001g0300 a0005c0005t0001g0261 a0005c0005t0001g0266 a0005c0005t0001g0267	9	366	0.0246	-18	c.245 others(34): Show c.245-1014_245-997delGAAAGAAAGAAAGAAAGA		FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	3/7						chr8	TogoVar
FHDC1_chr4_152931323_152984671	152931455	AACACACA others(11): Show AACACACACACACACACAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02258.hp1 HG02818.hp1 others(2): Show HG02145.hp2 HG02258.hp1 HG02818.hp1 HG03139.hp1 NA18522.hp2	a0001 a0006 a0007 a0001 a0006 a0007	a0001c0002 a0001c0007 a0006c0016 others(1): Show a0001c0002 a0001c0007 a0006c0016 a0007c0009	a0001c0002t0003 a0001c0007t0008 a0006c0016t0011 others(1): Show a0001c0002t0003 a0001c0007t0008 a0006c0016t0011 a0007c0009t0016	a0001c0002t0003g0170 a0001c0007t0008g0168 a0006c0016t0011g0166 others(2): Show a0001c0002t0003g0170 a0001c0007t0008g0168 a0006c0016t0011g0166 a0006c0016t0011g0167 a0007c0009t0016g0169	5	438	0.0114	-18	c.-50 others(29): Show c.-5084_-5067delACACACACACACACACAC		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding					4867		chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949090	GTAATAAT others(11): Show GTAATAATAATAATAATAA	G G	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18944.hp1 NA18954.hp1 others(5): Show NA18942.hp2 NA18944.hp1 NA18954.hp1 NA18962.hp1 NA18966.hp1 NA18969.hp1 NA18982.hp2 NA19064.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0002c0001 a0004c0003 a0001c0002 a0002c0001 a0004c0003	a0001c0002t0002 a0001c0002t0025 a0001c0002t0045 others(2): Show a0001c0002t0002 a0001c0002t0025 a0001c0002t0045 a0002c0001t0001 a0004c0003t0001	a0001c0002t0002g0388 a0001c0002t0002g0390 a0001c0002t0002g0392 others(5): Show a0001c0002t0002g0388 a0001c0002t0002g0390 a0001c0002t0002g0392 a0001c0002t0002g0393 a0001c0002t0025g0014 a0001c0002t0045g0014 a0002c0001t0001g0391 a0004c0003t0001g0400	8	438	0.0183	-18	c.499 others(35): Show c.499-4390_499-4373delTAATAATAATAATAATAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949109	TAATAATA others(11): Show TAATAATAATAATAATAAG	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00597.hp2 NA18612.hp2 others(1): Show HG00438.hp2 HG00597.hp2 NA18612.hp2 NA18975.hp1	a0002 a0004 a0002 a0004	a0002c0001 a0004c0003 a0002c0001 a0004c0003	a0002c0001t0001 a0004c0003t0001 a0004c0003t0010 a0002c0001t0001 a0004c0003t0001 a0004c0003t0010	a0002c0001t0001g0394 a0002c0001t0001g0418 a0004c0003t0001g0395 others(1): Show a0002c0001t0001g0394 a0002c0001t0001g0418 a0004c0003t0001g0395 a0004c0003t0010g0401	4	438	0.0091	-18	c.499 others(35): Show c.499-4387_499-4370delTAATAATAATAATAAGAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949112	TAATAATA others(11): Show TAATAATAATAATAAGAAG	T T	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03942.hp1 HG04228.hp1 others(1): Show HG02818.hp1 HG03942.hp1 HG04228.hp1 NA18948.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0007 a0002c0001 a0001c0002 a0001c0007 a0002c0001	a0001c0002t0029 a0001c0007t0008 a0002c0001t0001 a0001c0002t0029 a0001c0007t0008 a0002c0001t0001	a0001c0002t0029g0386 a0001c0007t0008g0168 a0002c0001t0001g0251 others(1): Show a0001c0002t0029g0386 a0001c0007t0008g0168 a0002c0001t0001g0251 a0002c0001t0001g0396	4	438	0.0091	-18	c.499 others(35): Show c.499-4384_499-4367delTAATAATAATAAGAAGAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949115	TAATAATA others(11): Show TAATAATAATAAGAAGAAG	T T	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG02258.hp1 HG02486.hp2 HG01175.hp2 HG02258.hp1 HG02486.hp2	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0002 a0003c0004 a0007c0009 a0001c0002 a0003c0004 a0007c0009	a0001c0002t0050 a0003c0004t0007 a0007c0009t0016 a0001c0002t0050 a0003c0004t0007 a0007c0009t0016	a0001c0002t0050g0021 a0003c0004t0007g0411 a0007c0009t0016g0169 a0001c0002t0050g0021 a0003c0004t0007g0411 a0007c0009t0016g0169	3	438	0.0069	-18	c.499 others(35): Show c.499-4381_499-4364delTAATAATAAGAAGAAGAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949118	TAATAATA others(11): Show TAATAATAAGAAGAAGAAG	T T	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01070.hp2 HG02055.hp1 others(2): Show HG00597.hp1 HG01070.hp2 HG02055.hp1 HG03139.hp2 NA18522.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0002 a0001c0005 a0003c0004 others(1): Show a0001c0002 a0001c0005 a0003c0004 a0004c0003	a0001c0002t0003 a0001c0002t0026 a0001c0005t0002 others(2): Show a0001c0002t0003 a0001c0002t0026 a0001c0005t0002 a0003c0004t0001 a0004c0003t0001	a0001c0002t0003g0170 a0001c0002t0026g0417 a0001c0005t0002g0164 others(2): Show a0001c0002t0003g0170 a0001c0002t0026g0417 a0001c0005t0002g0164 a0003c0004t0001g0414 a0004c0003t0001g0415	5	438	0.0114	-18	c.499 others(35): Show c.499-4378_499-4361delTAATAAGAAGAAGAAGAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949121	TAATAAGA others(11): Show TAATAAGAAGAAGAAGAAG	T T	intron_variant intron_variant	MODIFIER	HG03453.hp2 NA19043.hp1 HG03453.hp2 NA19043.hp1	a0001 a0001	a0001c0005 a0001c0007 a0001c0005 a0001c0007	a0001c0005t0022 a0001c0007t0008 a0001c0005t0022 a0001c0007t0008	a0001c0005t0022g0046 a0001c0007t0008g0047 a0001c0005t0022g0046 a0001c0007t0008g0047	2	438	0.0046	-18	c.499 others(35): Show c.499-4375_499-4358delTAAGAAGAAGAAGAAGAA		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152949124	TAAGAAGA others(11): Show TAAGAAGAAGAAGAAGAAG	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01346.hp2 HG02055.hp2 others(1): Show HG00280.hp1 HG01346.hp2 HG02055.hp2 NA18906.hp2	a0001 a0002 a0026 a0001 a0002 a0026	a0001c0002 a0002c0001 a0026c0038 a0001c0002 a0002c0001 a0026c0038	a0001c0002t0006 a0002c0001t0001 a0026c0038t0007 a0001c0002t0006 a0002c0001t0001 a0026c0038t0007	a0001c0002t0006g0045 a0002c0001t0001g0330 a0002c0001t0001g0331 others(1): Show a0001c0002t0006g0045 a0002c0001t0001g0330 a0002c0001t0001g0331 a0026c0038t0007g0048	4	438	0.0091	-18	c.499 others(35): Show c.499-4344_499-4327delAAGAAGAAGAAGAAGAAG		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHDC1_chr4_152931323_152984671	152962940	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02015.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0240 a0002c0001t0001g0240	1	438	0.0023	-18	c.922 others(31): Show c.922-58_922-41delGTGTGTGTGTGTGTGTGT		FHDC1	ENSG00000137460.10	transcript	ENST00000511601.6	protein_coding	7/11					INFO_REALIGN_3_PRIME	chr4	TogoVar
FHIP2A_chr10_114816780_114869717	114821667	CCCGCCCC others(11): Show CCCGCCCCCGCGGCGCCTA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	332	0.0030	-18	c.-41 others(27): Show c.-411_-394delCCGCCCCCGCGGCGCCTA		FHIP2A	ENSG00000151553.16	transcript	ENST00000369248.9	protein_coding					112		chr10	TogoVar
FHIP2B_chr8_22084150_22109911	22109418	AGAACGCG others(11): Show AGAACGCGGAAGCGCACGC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0008 a0001c0001t0002g0008	1	394	0.0025	-18	c.64 others(29): Show c.6488_*6505delGAACGCGGAAGCGCACGC		FHIP2B	ENSG00000158863.22	transcript	ENST00000289921.8	protein_coding					4508		chr8	TogoVar
FHIT_chr3_59742277_61256452	59764863	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03225.hp1 NA19043.hp1 HG03225.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0046 a0001c0001t0002g0027 a0001c0001t0002g0046	2	46	0.0435	-18	c.349 others(37): Show c.349-12560_349-12543delGTGTGTGTGTGTGTGTGT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	8/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60066630	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03139.hp2 HG02258.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0025 a0001c0001t0013g0003 a0001c0001t0001g0025 a0001c0001t0013g0003	2	46	0.0435	-18	c.104 others(37): Show c.104-52496_104-52479delAAAAAAAAAAAAAAAAAA		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60094803	GAGAGAGA others(11): Show GAGAGAGAGAGAGAGAAGA	G G	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02257.hp1 HG02257.hp2 others(5): Show HG01981.hp1 HG02257.hp1 HG02257.hp2 HG02300.hp1 HG02300.hp2 HG02723.hp1 HG03017.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0002t0001	a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0042 others(5): Show a0001c0001t0001g0006 a0001c0001t0001g0034 a0001c0001t0001g0042 a0001c0001t0002g0002 a0001c0001t0002g0045 a0001c0001t0003g0016 a0001c0001t0010g0018 a0001c0002t0001g0030	8	46	0.1739	-18	c.104 others(37): Show c.104-80669_104-80652delTCTTCTCTCTCTCTCTCT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60418372	GTGTGTAT others(11): Show GTGTGTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG01981.hp1 HG02258.hp2 HG01169.hp1 HG01981.hp1 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001	a0001c0001t0002g0021 a0001c0001t0004g0011 a0001c0002t0001g0030 a0001c0001t0002g0021 a0001c0001t0004g0011 a0001c0002t0001g0030	3	46	0.0652	-18	c.103 others(39): Show c.103+118470_103+118487delTATATATATATATACACA		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60418374	GTGTATAT others(11): Show GTGTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0023 a0001c0002t0001g0023	1	46	0.0217	-18	c.103 others(39): Show c.103+118468_103+118485delTATATATATATATATACA		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60772314	CTATATAT others(11): Show CTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02723.hp1 HG03139.hp1 others(7): Show HG02622.hp2 HG02723.hp1 HG03139.hp1 HG03225.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA19043.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0002t0001	a0001c0001t0001g0001 a0001c0001t0001g0029 a0001c0001t0002g0002 others(7): Show a0001c0001t0001g0001 a0001c0001t0001g0029 a0001c0001t0002g0002 a0001c0001t0002g0027 a0001c0001t0003g0016 a0001c0001t0005g0028 a0001c0001t0007g0007 a0001c0001t0008g0036 a0001c0001t0012g0022 a0001c0002t0001g0023	10	46	0.2174	-18	c.-18 others(37): Show c.-18+49587_-18+49604delTATATATATATATATATA		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	4/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60797455	CAGTAGTA others(11): Show CAGTAGTAGTAGTAGTAGT	C C	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02257.hp2 HG02300.hp1 others(1): Show HG01169.hp1 HG02257.hp2 HG02300.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0010 a0001c0001t0002 a0001c0001t0004 a0001c0001t0010	a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0004g0011 others(1): Show a0001c0001t0002g0045 a0001c0001t0002g0046 a0001c0001t0004g0011 a0001c0001t0010g0018	4	46	0.0870	-18	c.-18 others(37): Show c.-18+24446_-18+24463delACTACTACTACTACTACT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	4/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	60826197	GGAAGGAA others(11): Show GGAAGGAAGGAAGGAAAGA	G G	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0032 a0001c0002t0002g0032	1	46	0.0217	-18	c.-11 others(37): Show c.-110-4204_-110-4187delTCTTTCCTTCCTTCCTTC		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	3/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	61135582	AACACACA others(11): Show AACACACACACACACACAT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0022 a0001c0001t0012g0022	1	46	0.0217	-18	c.-16 others(39): Show c.-164+65017_-164+65034delATGTGTGTGTGTGTGTGT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	2/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	61219327	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	46	0.0217	-18	c.-21 others(39): Show c.-212-18680_-212-18663delCACACACACACACACACA		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	1/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	61249933	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0036 a0001c0001t0008g0036	1	46	0.0217	-18	c.-21 others(37): Show c.-213+1350_-213+1367delGTGTGTGTGTGTGTGTGT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	1/9						chr3	TogoVar
FHIT_chr3_59742277_61256452	61249973	CACACACA others(11): Show CACACACACACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0004 a0001c0001t0011g0004	1	46	0.0217	-18	c.-21 others(37): Show c.-213+1310_-213+1327delTTGTGTGTGTGTGTGTGT		FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	1/9						chr3	TogoVar
FHL2_chr2_105355826_105404051	105397553	TGTGAGAC others(11): Show TGTGAGACGGTGAGCTAAA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02818.hp1 HG02895.hp1 others(2): Show HG02055.hp2 HG02818.hp1 HG02895.hp1 HG03225.hp1 HG03579.hp2	a0001 a0001	a0001c0005 a0001c0009 a0001c0005 a0001c0009	a0001c0005t0001 a0001c0009t0001 a0001c0005t0001 a0001c0009t0001	a0001c0005t0001g0257 a0001c0005t0001g0258 a0001c0005t0001g0259 others(2): Show a0001c0005t0001g0257 a0001c0005t0001g0258 a0001c0005t0001g0259 a0001c0005t0001g0261 a0001c0009t0001g0260	5	448	0.0112	-18	c.-75 others(33): Show c.-75-874_-75-857delTTTAGCTCACCGTCTCAC		FHL2	ENSG00000115641.19	transcript	ENST00000530340.6	protein_coding	1/6						chr2	TogoVar
FHL5_chr6_96558128_96623626	96594224	AATTTATA others(11): Show AATTTATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0325 a0003c0003t0001g0325	1	378	0.0027	-18	c.-12 others(35): Show c.-12-9375_-12-9358delTTATATATATATATATAT		FHL5	ENSG00000112214.11	transcript	ENST00000450218.6	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr6	TogoVar
FHL5_chr6_96558128_96623626	96594227	TTATATAT others(11): Show TTATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG03239.hp2 HG03710.hp1 others(1): Show HG00280.hp1 HG03239.hp2 HG03710.hp1 NA19067.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0002c0002t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0002g0073 a0001c0001t0002g0101 a0002c0002t0001g0179 others(1): Show a0001c0001t0002g0073 a0001c0001t0002g0101 a0002c0002t0001g0179 a0002c0002t0001g0197	4	378	0.0106	-18	c.-12 others(35): Show c.-12-9345_-12-9328delATATATATATATATATAT		FHL5	ENSG00000112214.11	transcript	ENST00000450218.6	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr6	TogoVar
FHOD3_chr18_36292713_36785220	36369440	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG03098.hp2 HG03209.hp1 HG02132.hp1 HG03098.hp2 HG03209.hp1	a0001 a0004 a0013 a0001 a0004 a0013	a0001c0004 a0004c0011 a0013c0015 a0001c0004 a0004c0011 a0013c0015	a0001c0004t0001 a0004c0011t0002 a0013c0015t0001 a0001c0004t0001 a0004c0011t0002 a0013c0015t0001	a0001c0004t0001g0075 a0004c0011t0002g0083 a0013c0015t0001g0024 a0001c0004t0001g0075 a0004c0011t0002g0083 a0013c0015t0001g0024	3	168	0.0179	-18	c.273 others(35): Show c.273-3198_273-3181delCACACACACACACACACA		FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	2/28					INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36369482	CACACACA others(11): Show CACACACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0063	1	168	0.0060	-18	c.273 others(35): Show c.273-3196_273-3179delCACACACACACACACATA		FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	2/28					INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36439521	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0022 a0001c0022	a0001c0022t0001 a0001c0022t0001	a0001c0022t0001g0129 a0001c0022t0001g0129	1	168	0.0060	-18	c.338 others(37): Show c.338-62381_338-62364delGTGTGTGTGTGTGTGTGT		FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28					INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36475751	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02818.hp1 HG02922.hp1 others(3): Show HG01884.hp1 HG02818.hp1 HG02922.hp1 HG02965.hp1 HG03225.hp1 NA18522.hp1	a0001 a0003 a0023 others(1): Show a0001 a0003 a0023 a0024	a0001c0001 a0001c0004 a0003c0003 others(3): Show a0001c0001 a0001c0004 a0003c0003 a0003c0005 a0023c0038 a0024c0039	a0001c0001t0001 a0001c0004t0001 a0003c0003t0001 others(3): Show a0001c0001t0001 a0001c0004t0001 a0003c0003t0001 a0003c0005t0001 a0023c0038t0001 a0024c0039t0001	a0001c0001t0001g0059 a0001c0004t0001g0084 a0003c0003t0001g0050 others(3): Show a0001c0001t0001g0059 a0001c0004t0001g0084 a0003c0003t0001g0050 a0003c0005t0001g0054 a0023c0038t0001g0053 a0024c0039t0001g0055	6	168	0.0357	-18	c.338 others(37): Show c.338-26154_338-26137delACACACACACACACACAC		FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28					INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36482852	CACACACA others(11): Show CACACACAGAGAGAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0145 a0001c0004t0001g0145	1	168	0.0060	-18	c.338 others(37): Show c.338-19078_338-19061delCACACAGAGAGAGAGAGA		FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28					INFO_REALIGN_3_PRIME	chr18	TogoVar

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