Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GALNT15_chr3_16169680_16235165	16203539	TCTCTCAC others(11): Show TCTCTCACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00673.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0324 a0001c0001t0002g0324	1	388	0.0026	-18	c.911 others(35): Show c.911+2718_911+2735delTCTCACACACACACACAC	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr3	TogoVar
GALNT15_chr3_16169680_16235165	16232498	ATATATAT others(11): Show ATATATATATATATTTATT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG02074.hp1 NA18747.hp1 others(11): Show HG00621.hp1 HG02074.hp1 NA18747.hp1 NA18942.hp2 NA18950.hp2 NA18955.hp1 NA18967.hp1 NA18972.hp1 NA18978.hp1 NA18989.hp1 NA18994.hp1 NA19064.hp2 NA19068.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0003 a0001c0001t0001 a0001c0001t0002 a0001c0002t0003	a0001c0001t0001g0176 a0001c0001t0001g0246 a0001c0001t0001g0257 others(11): Show a0001c0001t0001g0176 a0001c0001t0001g0246 a0001c0001t0001g0257 a0001c0001t0001g0260 a0001c0001t0001g0261 a0001c0001t0001g0276 a0001c0001t0001g0277 a0001c0001t0001g0278 a0001c0001t0002g0058 a0001c0001t0002g0059 a0001c0001t0002g0122 a0001c0001t0002g0274 a0001c0001t0002g0290 a0001c0002t0003g0304	14	388	0.0361	-18	c.49 others(29): Show c.4999_*5016delTATATATATATATTTATT	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding		2334		chr3	TogoVar
GALNT15_chr3_16169680_16235165	16233640	AGGTTTTT others(11): Show AGGTTTTTGTGGTAATTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18952.hp2 NA18952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0164 a0001c0001t0002g0164	1	388	0.0026	-18	c.61 others(29): Show c.6141_*6158delGGTTTTTGTGGTAATTTT	GALNT15	ENSG00000131386.20	transcript	ENST00000339732.10	protein_coding		3476		chr3	TogoVar
GALNT16_chr14_69255158_69359466	69322925	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0245 a0001c0001t0001g0245	1	306	0.0033	-18	c.336 others(35): Show c.336-1727_336-1710delTGTGTGTGTGTGTGTGTG	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT16_chr14_69255158_69359466	69322965	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGTGC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0007 a0003c0004t0001g0007	1	306	0.0033	-18	c.336 others(35): Show c.336-1725_336-1708delTGTGTGTGTGTGTGTGCG	GALNT16	ENSG00000100626.17	transcript	ENST00000448469.8	protein_coding	2/14		INFO_REALIGN_3_PRIME	chr14	TogoVar
GALNT17_chr7_71127144_71718599	71371089	AACTGTTG others(11): Show AACTGTTGCTGACTGTGGC	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0011 a0001c0001t0003g0011	1	76	0.0132	-18	c.423 others(37): Show c.423-17144_423-17127delCTGTTGCTGACTGTGGCA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71377104	AAATAAAA others(11): Show AAATAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0006 a0001c0002t0003g0006	1	76	0.0132	-18	c.423 others(37): Show c.423-11129_423-11112delATAAAAAAAATATATATA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71486334	AAATAATA others(11): Show AAATAATAATAATAATAAT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0056 a0001c0001t0006g0056	1	76	0.0132	-18	c.962 others(37): Show c.962+65267_962+65284delATAATAATAATAATAATA	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	5/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71595660	GACACACA others(11): Show GACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0065 a0001c0001t0009g0065	1	76	0.0132	-18	c.108 others(39): Show c.1080+24285_1080+24302delACACACACACACACACAC	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT17_chr7_71127144_71718599	71701735	ATATATGT others(11): Show ATATATGTGTATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	76	0.0132	-18	c.150 others(37): Show c.1501-9020_1501-9003delGTGTATATATATGTATAT	GALNT17	ENSG00000185274.13	transcript	ENST00000333538.10	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNT18_chr11_11265877_11627005	11325913	AGCATTCA others(11): Show AGCATTCACACACAGAGTG	A A	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG02809.hp1 HG01943.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0002 a0001c0011t0001 a0001c0001t0002 a0001c0011t0001	a0001c0001t0002g0017 a0001c0011t0001g0216 a0001c0001t0002g0017 a0001c0011t0001g0216	2	260	0.0077	-18	c.151 others(37): Show c.1512+1155_1512+1172delCACTCTGTGTGTGAATGC	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	9/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11388568	TGCTGATT others(11): Show TGCTGATTTCAGGCTACCA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00408.hp1 HG00438.hp2 others(44): Show HG00280.hp1 HG00408.hp1 HG00438.hp2 HG00733.hp1 HG01070.hp1 HG01123.hp2 HG01192.hp1 HG01257.hp2 HG02257.hp2 HG02258.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02717.hp2 HG02886.hp1 HG02896.hp1 HG02897.hp2 HG02970.hp2 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03710.hp2 HG04115.hp1 HG04228.hp1 NA18941.hp1 NA18946.hp2 NA18950.hp1 NA18950.hp2 NA18953.hp2 NA18966.hp2 NA18968.hp1 NA18974.hp1 NA18978.hp2 NA18992.hp2 NA18995.hp1 NA18995.hp2 NA19011.hp1 NA19030.hp2 NA19068.hp1 NA19074.hp1 NA19085.hp1 NA20752.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0010 a0001c0015 a0001c0020 a0002c0008 a0003c0017	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0014 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0015 a0001c0003t0001 a0001c0003t0002 a0001c0004t0001 a0001c0004t0003 a0001c0004t0004 a0001c0004t0013 a0001c0006t0002 a0001c0010t0001 a0001c0015t0001 a0001c0020t0005 a0002c0008t0001 a0003c0017t0001	a0001c0001t0001g0106 a0001c0001t0001g0127 a0001c0001t0001g0180 others(44): Show a0001c0001t0001g0106 a0001c0001t0001g0127 a0001c0001t0001g0180 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0240 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0252 a0001c0001t0002g0033 a0001c0001t0002g0042 a0001c0001t0002g0055 a0001c0001t0002g0062 a0001c0001t0002g0075 a0001c0001t0002g0079 a0001c0001t0002g0086 a0001c0001t0005g0009 a0001c0001t0014g0095 a0001c0002t0001g0143 a0001c0002t0001g0245 a0001c0002t0002g0020 a0001c0002t0002g0038 a0001c0002t0003g0202 a0001c0002t0003g0241 a0001c0002t0004g0068 a0001c0002t0004g0091 a0001c0002t0015g0098 a0001c0003t0001g0128 a0001c0003t0001g0156 a0001c0003t0001g0172 a0001c0003t0001g0188 a0001c0003t0001g0194 a0001c0003t0002g0025 a0001c0003t0002g0049 a0001c0003t0002g0060 a0001c0004t0001g0161 a0001c0004t0001g0191 a0001c0004t0003g0250 a0001c0004t0004g0012 a0001c0004t0013g0081 a0001c0006t0002g0029 a0001c0010t0001g0201 a0001c0015t0001g0229 a0001c0020t0005g0008 a0002c0008t0001g0220 a0003c0017t0001g0235	47	260	0.1808	-18	c.596 others(35): Show c.596-9322_596-9305delTGGTAGCCTGAAATCAGC	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	3/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11388678	CGCTGGTC others(11): Show CGCTGGTCTAACGCCCAGG	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0002 a0001c0006t0002	a0001c0006t0002g0027 a0001c0006t0002g0027	1	260	0.0039	-18	c.596 others(35): Show c.596-9432_596-9415delCCTGGGCGTTAGACCAGC	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	3/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11478915	CGGCATCT others(11): Show CGGCATCTCCCGCGGAGGT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(193): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00733.hp1 HG00733.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp2 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01943.hp2 HG01981.hp1 HG01981.hp2 HG02055.hp1 HG02055.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02145.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03017.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18906.hp1 NA18906.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18945.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18948.hp1 NA18948.hp2 NA18950.hp2 NA18953.hp1 NA18955.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18966.hp1 NA18966.hp2 NA18968.hp1 NA18968.hp2 NA18971.hp1 NA18971.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18984.hp1 NA18984.hp2 NA18992.hp1 NA18994.hp1 NA18995.hp1 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19057.hp1 NA19057.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19086.hp2 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(12): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0012 a0001c0014 a0001c0015 a0001c0016 a0001c0018 a0001c0019 a0001c0020 a0002c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(37): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 a0001c0001t0019 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0008 a0001c0002t0012 a0001c0002t0015 a0001c0002t0016 a0001c0003t0001 a0001c0003t0002 a0001c0003t0005 a0001c0003t0010 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0004 a0001c0004t0006 a0001c0004t0007 a0001c0004t0009 a0001c0004t0018 a0001c0005t0001 a0001c0005t0002 a0001c0006t0002 a0001c0007t0001 a0001c0012t0006 a0001c0014t0003 a0001c0015t0001 a0001c0016t0002 a0001c0018t0001 a0001c0019t0001 a0001c0020t0005 a0002c0008t0001	a0001c0001t0001g0101 a0001c0001t0001g0106 a0001c0001t0001g0108 others(193): Show a0001c0001t0001g0101 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0117 a0001c0001t0001g0123 a0001c0001t0001g0127 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0155 a0001c0001t0001g0160 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0173 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0193 a0001c0001t0001g0200 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0226 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0001g0240 a0001c0001t0001g0258 a0001c0001t0002g0011 a0001c0001t0002g0016 a0001c0001t0002g0022 a0001c0001t0002g0024 a0001c0001t0002g0028 a0001c0001t0002g0033 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0047 a0001c0001t0002g0051 a0001c0001t0002g0055 a0001c0001t0002g0056 a0001c0001t0002g0057 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0075 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0082 a0001c0001t0002g0084 a0001c0001t0002g0086 a0001c0001t0002g0088 a0001c0001t0002g0094 a0001c0001t0005g0009 a0001c0001t0011g0001 a0001c0001t0019g0260 a0001c0002t0001g0109 a0001c0002t0001g0119 a0001c0002t0001g0121 a0001c0002t0001g0130 a0001c0002t0001g0137 a0001c0002t0001g0143 a0001c0002t0001g0157 a0001c0002t0001g0158 a0001c0002t0001g0164 a0001c0002t0001g0185 a0001c0002t0001g0204 a0001c0002t0001g0214 a0001c0002t0001g0230 a0001c0002t0001g0234 a0001c0002t0001g0255 a0001c0002t0002g0015 a0001c0002t0002g0020 a0001c0002t0002g0050 a0001c0002t0002g0066 a0001c0002t0002g0080 a0001c0002t0002g0089 a0001c0002t0002g0092 a0001c0002t0003g0159 a0001c0002t0003g0183 a0001c0002t0003g0189 a0001c0002t0003g0196 a0001c0002t0003g0197 a0001c0002t0003g0202 a0001c0002t0003g0203 a0001c0002t0003g0215 a0001c0002t0003g0241 a0001c0002t0004g0010 a0001c0002t0004g0048 a0001c0002t0004g0059 a0001c0002t0004g0065 a0001c0002t0004g0068 a0001c0002t0005g0004 a0001c0002t0006g0110 a0001c0002t0006g0148 a0001c0002t0007g0053 a0001c0002t0008g0153 a0001c0002t0012g0006 a0001c0002t0015g0098 a0001c0002t0016g0099 a0001c0003t0001g0104 a0001c0003t0001g0107 a0001c0003t0001g0116 a0001c0003t0001g0120 a0001c0003t0001g0128 a0001c0003t0001g0129 a0001c0003t0001g0136 a0001c0003t0001g0142 a0001c0003t0001g0150 a0001c0003t0001g0156 a0001c0003t0001g0171 a0001c0003t0001g0174 a0001c0003t0001g0175 a0001c0003t0001g0181 a0001c0003t0001g0188 a0001c0003t0001g0192 a0001c0003t0001g0194 a0001c0003t0001g0199 a0001c0003t0001g0207 a0001c0003t0001g0211 a0001c0003t0001g0213 a0001c0003t0001g0219 a0001c0003t0001g0223 a0001c0003t0001g0237 a0001c0003t0001g0242 a0001c0003t0001g0243 a0001c0003t0001g0259 a0001c0003t0002g0025 a0001c0003t0002g0036 a0001c0003t0002g0040 a0001c0003t0002g0049 a0001c0003t0002g0058 a0001c0003t0002g0071 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0003t0002g0074 a0001c0003t0005g0005 a0001c0003t0010g0096 a0001c0003t0010g0097 a0001c0004t0001g0105 a0001c0004t0001g0124 a0001c0004t0001g0162 a0001c0004t0001g0184 a0001c0004t0001g0208 a0001c0004t0001g0233 a0001c0004t0002g0023 a0001c0004t0002g0037 a0001c0004t0002g0085 a0001c0004t0003g0100 a0001c0004t0003g0113 a0001c0004t0003g0114 a0001c0004t0003g0118 a0001c0004t0003g0125 a0001c0004t0003g0132 a0001c0004t0003g0138 a0001c0004t0003g0151 a0001c0004t0003g0177 a0001c0004t0003g0190 a0001c0004t0003g0198 a0001c0004t0003g0217 a0001c0004t0003g0218 a0001c0004t0003g0250 a0001c0004t0004g0012 a0001c0004t0004g0013 a0001c0004t0004g0031 a0001c0004t0004g0067 a0001c0004t0004g0070 a0001c0004t0006g0131 a0001c0004t0006g0228 a0001c0004t0007g0090 a0001c0004t0009g0002 a0001c0004t0009g0003 a0001c0004t0018g0195 a0001c0005t0001g0115 a0001c0005t0001g0145 a0001c0005t0001g0147 a0001c0005t0001g0163 a0001c0005t0001g0182 a0001c0005t0002g0083 a0001c0006t0002g0021 a0001c0006t0002g0027 a0001c0006t0002g0029 a0001c0007t0001g0249 a0001c0012t0006g0222 a0001c0014t0003g0122 a0001c0015t0001g0229 a0001c0016t0002g0054 a0001c0018t0001g0239 a0001c0019t0001g0209 a0001c0020t0005g0008 a0002c0008t0001g0220	196	260	0.7539	-18	c.236 others(37): Show c.236-29997_236-29980delACCTCCGCGGGAGATGCC	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11490219	TCTCTCTC others(11): Show TCTCTCTCTCTCTCTAACA	T T	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0070 a0001c0004t0004g0070	1	260	0.0039	-18	c.236 others(37): Show c.236-41301_236-41284delTGTTAGAGAGAGAGAGAG	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT18_chr11_11265877_11627005	11576696	TGTTCCCT others(11): Show TGTTCCCTTAGCCGGGTTA	T T	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01943.hp1 HG03486.hp2 others(1): Show HG01243.hp2 HG01943.hp1 HG03486.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0011 a0001c0001 a0001c0004 a0001c0011	a0001c0001t0002 a0001c0004t0001 a0001c0011t0001 a0001c0001t0002 a0001c0004t0001 a0001c0011t0001	a0001c0001t0002g0024 a0001c0001t0002g0039 a0001c0004t0001g0144 others(1): Show a0001c0001t0002g0024 a0001c0001t0002g0039 a0001c0004t0001g0144 a0001c0011t0001g0216	4	260	0.0154	-18	c.235 others(37): Show c.235+44645_235+44662delTAACCCGGCTAAGGGAAC	GALNT18	ENSG00000110328.6	transcript	ENST00000227756.5	protein_coding	1/10			chr11	TogoVar
GALNT1_chr18_35576740_35716834	35686114	TAGAAAAT others(11): Show TAGAAAATATAATGCAAAA	T T	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0145 a0001c0001t0004g0145	1	310	0.0032	-18	c.690 others(33): Show c.690-895_690-878delTATAATGCAAAAAGAAAA	GALNT1	ENSG00000141429.14	transcript	ENST00000269195.6	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALNT5_chr2_157252705_157323491	157294784	CCACACAC others(11): Show CCACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02717.hp2 NA20129.hp1 HG02717.hp2 NA20129.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0100 a0002c0003t0101 a0002c0003t0100 a0002c0003t0101	a0002c0003t0100g0197 a0002c0003t0101g0196 a0002c0003t0100g0197 a0002c0003t0101g0196	2	282	0.0071	-18	c.174 others(35): Show c.1742-857_1742-840delACACACACACACACACAC	GALNT5	ENSG00000136542.9	transcript	ENST00000259056.5	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
GALNT6_chr12_51346252_51396406	51371054	AATTATTA others(11): Show AATTATTATTATTATTATT	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02896.hp1 HG02897.hp1 HG02572.hp1 HG02896.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0323 a0001c0001t0001g0010 a0001c0001t0001g0323	3	428	0.0070	-18	c.665 others(35): Show c.665-5493_665-5476delAATAATAATAATAATAAT	GALNT6	ENSG00000139629.16	transcript	ENST00000356317.8	protein_coding	4/11			chr12	TogoVar
GALNT7_chr4_173163811_173328967	173167583	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0252 a0001c0003t0002g0252	1	266	0.0038	-18	c.-12 others(29): Show c.-1252_-1235delAAAAAAAAAAAAAAAAAA	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding		1227		chr4	TogoVar
GALNT7_chr4_173163811_173328967	173183043	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01081.hp2 HG01192.hp1 others(26): Show HG00621.hp1 HG01081.hp2 HG01192.hp1 HG01943.hp1 HG01993.hp2 HG02040.hp2 HG02293.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp2 HG02622.hp2 HG02647.hp2 HG02922.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03516.hp2 NA18942.hp1 NA18947.hp2 NA18951.hp2 NA18964.hp1 NA18970.hp1 NA18980.hp1 NA18984.hp1 NA18992.hp2 NA18993.hp2 NA19077.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0030 others(26): Show a0001c0001t0001g0001 a0001c0001t0001g0007 a0001c0001t0001g0030 a0001c0001t0001g0032 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0079 a0001c0001t0001g0082 a0001c0001t0001g0100 a0001c0001t0001g0145 a0001c0001t0002g0026 a0001c0001t0002g0028 a0001c0001t0002g0031 a0001c0001t0002g0033 a0001c0001t0002g0034 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0037 a0001c0001t0002g0038 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0003g0080 a0001c0001t0003g0081 a0001c0001t0003g0083 a0001c0004t0001g0076 a0001c0004t0001g0077 a0001c0004t0001g0084 a0001c0004t0001g0104	29	266	0.1090	-18	c.126 others(37): Show c.126+14113_126+14130delACACACACACACACACAC	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT7_chr4_173163811_173328967	173266868	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02056.hp1 HG04204.hp2 others(1): Show HG00140.hp1 HG02056.hp1 HG04204.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0128 a0001c0001t0001g0140 a0001c0001t0001g0142 others(1): Show a0001c0001t0001g0128 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0002t0001g0018	4	266	0.0150	-18	c.587 others(37): Show c.587+18470_587+18487delTGTGTGTGTGTGTGTGTG	GALNT7	ENSG00000109586.12	transcript	ENST00000265000.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNT8_chr12_4715400_4777726	4750701	GCTGGGTT others(11): Show GCTGGGTTGAATGGTATCT	G G	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0001 a0006c0008t0001	a0006c0008t0001g0188 a0006c0008t0001g0188	1	338	0.0030	-18	c.117 others(37): Show c.1173+4447_1173+4464delGGTTGAATGGTATCTCTG	GALNT8	ENSG00000130035.9	transcript	ENST00000252318.7	protein_coding	6/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
GALNT9_chr12_132191372_132334589	132209365	AAAAAATA others(11): Show AAAAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02109.hp2 HG02615.hp1 others(6): Show HG02055.hp1 HG02109.hp2 HG02615.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0016 others(2): Show a0001c0001 a0001c0006 a0001c0016 a0001c0017 a0001c0019	a0001c0001t0001 a0001c0006t0001 a0001c0016t0001 others(2): Show a0001c0001t0001 a0001c0006t0001 a0001c0016t0001 a0001c0017t0001 a0001c0019t0003	a0001c0001t0001g0072 a0001c0006t0001g0073 a0001c0006t0001g0078 others(6): Show a0001c0001t0001g0072 a0001c0006t0001g0073 a0001c0006t0001g0078 a0001c0006t0001g0142 a0001c0016t0001g0054 a0001c0016t0001g0147 a0001c0017t0001g0049 a0001c0017t0001g0148 a0001c0019t0003g0077	9	183	0.0492	-18	c.107 others(37): Show c.1078-5693_1078-5676delATTTATTTATTTATTTTT	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132222899	CCCCACAC others(11): Show CCCCACACCCCACATACAT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02735.hp2 HG03017.hp1 others(5): Show HG01243.hp1 HG02735.hp2 HG03017.hp1 HG03688.hp1 HG03942.hp2 NA18522.hp1 NA18953.hp2 NA19012.hp2	a0001 a0005 a0001 a0005	a0001c0002 a0001c0005 a0001c0006 others(4): Show a0001c0002 a0001c0005 a0001c0006 a0001c0018 a0001c0021 a0001c0043 a0005c0032	a0001c0002t0001 a0001c0005t0001 a0001c0006t0001 others(4): Show a0001c0002t0001 a0001c0005t0001 a0001c0006t0001 a0001c0018t0001 a0001c0021t0004 a0001c0043t0015 a0005c0032t0001	a0001c0002t0001g0068 a0001c0005t0001g0037 a0001c0006t0001g0097 others(5): Show a0001c0002t0001g0068 a0001c0005t0001g0037 a0001c0006t0001g0097 a0001c0006t0001g0098 a0001c0018t0001g0047 a0001c0021t0004g0155 a0001c0043t0015g0178 a0005c0032t0001g0026	8	183	0.0437	-18	c.107 others(39): Show c.1078-19227_1078-19210delATGTATGTGGGGTGTGGG	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	6/10			chr12	TogoVar
GALNT9_chr12_132191372_132334589	132295993	GGCCTCCG others(11): Show GGCCTCCGGAACAGGGAGA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00673.hp1 HG01978.hp1 others(16): Show HG00408.hp1 HG00673.hp1 HG01978.hp1 HG01981.hp2 HG02080.hp1 HG02135.hp2 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG03017.hp1 HG03942.hp2 NA18953.hp1 NA18961.hp1 NA18964.hp1 NA18971.hp1 NA18971.hp2 NA18999.hp2 NA19002.hp2 NA19004.hp2	a0001 a0003 a0006 others(1): Show a0001 a0003 a0006 a0007	a0001c0001 a0001c0002 a0001c0004 others(9): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0007 a0001c0008 a0001c0011 a0001c0014 a0001c0043 a0003c0039 a0006c0034 a0007c0035	a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 others(9): Show a0001c0001t0001 a0001c0002t0001 a0001c0004t0001 a0001c0006t0001 a0001c0007t0001 a0001c0008t0002 a0001c0011t0001 a0001c0014t0003 a0001c0043t0015 a0003c0039t0001 a0006c0034t0001 a0007c0035t0001	a0001c0001t0001g0059 a0001c0002t0001g0004 a0001c0002t0001g0022 others(16): Show a0001c0001t0001g0059 a0001c0002t0001g0004 a0001c0002t0001g0022 a0001c0002t0001g0105 a0001c0002t0001g0130 a0001c0002t0001g0135 a0001c0004t0001g0060 a0001c0004t0001g0076 a0001c0004t0001g0121 a0001c0006t0001g0098 a0001c0007t0001g0015 a0001c0008t0002g0176 a0001c0011t0001g0116 a0001c0011t0001g0129 a0001c0014t0003g0146 a0001c0043t0015g0178 a0003c0039t0001g0010 a0006c0034t0001g0163 a0007c0035t0001g0114	19	183	0.1038	-18	c.239 others(35): Show c.239-9581_239-9564delTCTCCCTGTTCCGGAGGC	GALNT9	ENSG00000182870.13	transcript	ENST00000328957.13	protein_coding	1/10			chr12	TogoVar
GALNTL5_chr7_151951446_152024929	151995348	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00544.hp1 HG00597.hp2 others(60): Show HG00323.hp2 HG00544.hp1 HG00597.hp2 HG00639.hp1 HG00673.hp1 HG01069.hp2 HG01070.hp2 HG01109.hp2 HG01255.hp2 HG01358.hp1 HG01515.hp2 HG01928.hp2 HG01943.hp2 HG01975.hp2 HG01978.hp2 HG02004.hp1 HG02056.hp2 HG02074.hp1 HG02080.hp2 HG02132.hp1 HG02155.hp1 HG02273.hp1 HG02293.hp1 HG02293.hp2 HG02698.hp2 HG02896.hp2 HG03195.hp1 HG03471.hp1 HG03704.hp1 HG03710.hp1 HG03831.hp2 HG03834.hp1 NA18612.hp1 NA18747.hp1 NA18942.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp2 NA18950.hp2 NA18955.hp2 NA18957.hp2 NA18963.hp1 NA18963.hp2 NA18971.hp2 NA18973.hp2 NA18974.hp1 NA18979.hp2 NA18989.hp2 NA18991.hp1 NA18995.hp2 NA19005.hp1 NA19010.hp2 NA19054.hp2 NA19056.hp2 NA19058.hp1 NA19058.hp2 NA19066.hp2 NA19079.hp1 NA19085.hp1 NA19087.hp2 NA19091.hp1 NA19091.hp2 NA20300.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0010	a0001c0001 a0002c0002 a0003c0003 others(3): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005 a0010c0008	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0003c0003t0001 a0004c0004t0001 a0004c0004t0002 a0005c0005t0001 a0010c0008t0001	a0001c0001t0001g0004 a0001c0001t0001g0018 a0001c0001t0001g0059 others(60): Show a0001c0001t0001g0004 a0001c0001t0001g0018 a0001c0001t0001g0059 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0107 a0001c0001t0001g0221 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0234 a0001c0001t0001g0256 a0001c0001t0001g0356 a0001c0001t0002g0122 a0001c0001t0002g0141 a0001c0001t0002g0147 a0001c0001t0002g0151 a0001c0001t0002g0184 a0001c0001t0002g0185 a0002c0002t0001g0067 a0003c0003t0001g0057 a0003c0003t0001g0062 a0003c0003t0001g0090 a0003c0003t0001g0211 a0003c0003t0001g0212 a0003c0003t0001g0213 a0003c0003t0001g0214 a0003c0003t0001g0215 a0003c0003t0001g0216 a0003c0003t0001g0217 a0003c0003t0001g0235 a0003c0003t0001g0244 a0004c0004t0001g0066 a0004c0004t0001g0101 a0004c0004t0001g0102 a0004c0004t0001g0222 a0004c0004t0001g0269 a0004c0004t0002g0123 a0004c0004t0002g0127 a0004c0004t0002g0128 a0004c0004t0002g0131 a0004c0004t0002g0132 a0004c0004t0002g0134 a0004c0004t0002g0135 a0004c0004t0002g0136 a0004c0004t0002g0138 a0004c0004t0002g0140 a0004c0004t0002g0142 a0004c0004t0002g0143 a0004c0004t0002g0144 a0004c0004t0002g0183 a0004c0004t0002g0186 a0005c0005t0001g0015 a0005c0005t0001g0362 a0010c0008t0001g0091	63	384	0.1641	-18	c.659 others(35): Show c.659-7341_659-7324delTTTTTTTTTTTTTTTTTT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding	5/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
GALNTL5_chr7_151951446_152024929	152023151	GAGGCTTG others(11): Show GAGGCTTGGACCCCAGGGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	384	0.0026	-18	c.33 others(29): Show c.3351_*3368delAGGCTTGGACCCCAGGGT	GALNTL5	ENSG00000106648.15	transcript	ENST00000392800.7	protein_coding		3223		chr7	TogoVar
GALNTL6_chr4_171808404_173046559	172057721	AAAAAAAA others(11): Show AAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0031 a0001c0001t0011g0031	1	40	0.0250	-18	c.139 others(39): Show c.139-171933_139-171916delAAAAAATATATATATATA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172160893	CACACACA others(11): Show CACACACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02258.hp1 HG02258.hp2 others(9): Show HG02015.hp1 HG02258.hp1 HG02258.hp2 HG02647.hp2 HG02717.hp2 HG02723.hp2 HG02965.hp1 HG03130.hp1 HG03139.hp2 NA18522.hp2 NA18906.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0011 a0001c0002t0002 a0001c0002t0003	a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0033 others(9): Show a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0002g0003 a0001c0001t0002g0022 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0037 a0001c0001t0009g0024 a0001c0001t0011g0031 a0001c0002t0002g0007 a0001c0002t0003g0001	12	40	0.3000	-18	c.139 others(37): Show c.139-68748_139-68731delACATACACACACACACAC	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	2/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172264555	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02647.hp2 HG02976.hp2 others(2): Show HG02630.hp2 HG02647.hp2 HG02976.hp2 HG03516.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0002	a0001c0001t0001g0014 a0001c0001t0002g0003 a0001c0001t0002g0008 others(2): Show a0001c0001t0001g0014 a0001c0001t0002g0003 a0001c0001t0002g0008 a0001c0001t0007g0006 a0001c0002t0002g0007	5	40	0.1250	-18	c.247 others(37): Show c.247+34812_247+34829delATATATATATATATATAT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172339257	CCACACAC others(11): Show CCACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02451.hp1 HG01884.hp2 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0023 a0001c0001t0004g0002 a0001c0001t0001g0023 a0001c0001t0004g0002	2	40	0.0500	-18	c.387 others(35): Show c.387-9225_387-9208delCACACACACACACACACA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172405427	ATATATAT others(11): Show ATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	40	0.0250	-18	c.553 others(37): Show c.553+56740_553+56757delATATATATATATATATTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172528317	AAAATATA others(11): Show AAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG03516.hp2 HG02647.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0012 a0001c0002t0002g0007 a0001c0001t0001g0012 a0001c0002t0002g0007	2	40	0.0500	-18	c.553 others(39): Show c.553+179630_553+179647delAATATATATATATATATA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172528319	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02976.hp1 HG02723.hp2 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0002 a0001c0004t0002 a0001c0001t0002 a0001c0004t0002	a0001c0001t0002g0037 a0001c0004t0002g0038 a0001c0001t0002g0037 a0001c0004t0002g0038	2	40	0.0500	-18	c.553 others(39): Show c.553+179659_553+179676delATATATATATATATATAT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172539890	TATATATA others(11): Show TATATATATATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02451.hp2 HG03139.hp2 HG02258.hp2 HG02451.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0017 a0001c0001t0002g0026 a0001c0001t0002g0032 a0001c0001t0001g0017 a0001c0001t0002g0026 a0001c0001t0002g0032	3	40	0.0750	-18	c.553 others(39): Show c.553+191203_553+191220delTATATATATATATATAAA	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172713222	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02630.hp2 HG02647.hp2 others(3): Show HG02015.hp1 HG02630.hp2 HG02647.hp2 HG02735.hp1 HG03195.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 a0001c0001t0001 a0001c0001t0003 a0001c0002t0002	a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0029 others(3): Show a0001c0001t0001g0012 a0001c0001t0001g0014 a0001c0001t0001g0029 a0001c0001t0001g0033 a0001c0001t0003g0019 a0001c0002t0002g0007	6	40	0.1500	-18	c.554 others(37): Show c.554-96111_554-96094delGTGTGTGTGTGTGTGTGT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALNTL6_chr4_171808404_173046559	172759799	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02976.hp1 HG02735.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0002	a0001c0001t0001g0029 a0001c0004t0002g0038 a0001c0001t0001g0029 a0001c0004t0002g0038	2	40	0.0500	-18	c.554 others(37): Show c.554-49531_554-49514delTTTTTTTTTTTTTTTTTT	GALNTL6	ENSG00000174473.17	transcript	ENST00000506823.6	protein_coding	5/12		INFO_REALIGN_3_PRIME	chr4	TogoVar
GALR1_chr18_77244848_77282900	77252896	TCACCACC others(11): Show TCACCACCACCACCACCAC	T T	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0134 a0001c0002t0134	a0001c0002t0134g0198 a0001c0002t0134g0198	1	366	0.0027	-18	c.666 others(35): Show c.666+1691_666+1708delCCACCACCACCACCACCA	GALR1	ENSG00000166573.6	transcript	ENST00000299727.5	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GALR2_chr17_76069781_76082537	76072413	TACCGCCG others(11): Show TACCGCCGCCGCCACTGCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp1 NA20752.hp1 HG02145.hp1 NA20752.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0001 a0003c0003t0001g0001 a0001c0001t0001g0001 a0003c0003t0001g0001	2	405	0.0049	-18	c.-24 others(29): Show c.-2470_-2453delACCGCCGCCGCCACTGCC	GALR2	ENSG00000182687.4	transcript	ENST00000329003.4	protein_coding		2367		chr17	TogoVar
GALT_chr9_34641675_34656035	34644301	TTATATAT others(11): Show TTATATATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp1 HG03098.hp2 HG06807.hp2 HG01243.hp1 HG03098.hp2 HG06807.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0002 a0001c0003t0001g0002	3	416	0.0072	-18	c.-24 others(29): Show c.-2403_-2386delTATATATATATATATATA	GALT	ENSG00000213930.12	transcript	ENST00000378842.8	protein_coding		2373		chr9	TogoVar
GALT_chr9_34641675_34656035	34655540	TGTCATTC others(11): Show TGTCATTCTCACAAAGTGG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	416	0.0024	-18	c.50 others(29): Show c.5092_*5109delGTCATTCTCACAAAGTGG	GALT	ENSG00000213930.12	transcript	ENST00000378842.8	protein_coding		4506		chr9	TogoVar
GANC_chr15_42268201_42358666	42339305	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01081.hp2 HG01175.hp1 others(1): Show HG00733.hp1 HG01081.hp2 HG01175.hp1 NA19003.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0201 a0002c0002t0002g0057 a0002c0002t0002g0081 others(1): Show a0001c0001t0001g0201 a0002c0002t0002g0057 a0002c0002t0002g0081 a0002c0002t0002g0083	4	262	0.0153	-18	c.184 others(35): Show c.1844-328_1844-311delCACACACACACACACACA	GANC	ENSG00000214013.10	transcript	ENST00000318010.13	protein_coding	16/23		INFO_REALIGN_3_PRIME	chr15	TogoVar
GAN_chr16_81309962_81395809	81376465	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0054 a0001c0001t0054	a0001c0001t0054g0309 a0001c0001t0054g0309	1	384	0.0026	-18	c.150 others(35): Show c.1503-726_1503-709delGTGTGTGTGTGTGTGTGT	GAN	ENSG00000261609.8	transcript	ENST00000648994.2	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr16	TogoVar
GAN_chr16_81309962_81395809	81376493	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0351 a0001c0001t0052g0351	1	384	0.0026	-18	c.150 others(35): Show c.1503-714_1503-697delGTGTGTATGTGTGTGTGT	GAN	ENSG00000261609.8	transcript	ENST00000648994.2	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr16	TogoVar
GAP43_chr3_115618510_115726483	115683133	GTGCGCGC others(11): Show GTGCGCGCGCGCGCGCACA	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0099 a0001c0001t0001g0100	2	352	0.0057	-18	c.628 others(35): Show c.628+6524_628+6541delTGCGCGCGCGCGCGCACA	GAP43	ENSG00000172020.13	transcript	ENST00000305124.11	protein_coding	2/2			chr3	TogoVar
GAP43_chr3_115618510_115726483	115716711	CAGACAAA others(11): Show CAGACAAATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0093 a0001c0001t0001g0093	1	352	0.0028	-18	c.629 others(35): Show c.629-4081_629-4064delGACAAATATATATATATA	GAP43	ENSG00000172020.13	transcript	ENST00000305124.11	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr3	TogoVar
GAP43_chr3_115618510_115726483	115716717	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02895.hp2 HG02630.hp1 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0224 a0001c0001t0005g0204 a0001c0001t0001g0224 a0001c0001t0005g0204	2	352	0.0057	-18	c.629 others(35): Show c.629-4043_629-4026delTATATATATATATATATA	GAP43	ENSG00000172020.13	transcript	ENST00000305124.11	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr3	TogoVar
GAPT_chr5_58486435_58502090	58488142	TTGTTACA others(11): Show TTGTTACAAAAGTGGCATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02717.hp2 HG02965.hp2 NA19043.hp2 HG02717.hp2 HG02965.hp2 NA19043.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0012 a0002c0003t0012	a0002c0003t0012g0009 a0002c0003t0012g0009	3	378	0.0079	-18	c.-38 others(29): Show c.-3817_-3800delTGTTACAAAAGTGGCATA	GAPT	ENSG00000175857.9	transcript	ENST00000502276.6	protein_coding		3292		chr5	TogoVar
GAPVD1_chr9_125256826_125372207	125300038	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG04228.hp1 HG04228.hp2 others(1): Show HG02165.hp2 HG04228.hp1 HG04228.hp2 NA19089.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0003 a0001c0001t0002 a0001c0002t0003	a0001c0001t0002g0091 a0001c0001t0002g0109 a0001c0001t0002g0111 others(1): Show a0001c0001t0002g0091 a0001c0001t0002g0109 a0001c0001t0002g0111 a0001c0002t0003g0126	4	340	0.0118	-18	c.185 others(33): Show c.185+971_185+988delATATATATATATATATAT	GAPVD1	ENSG00000165219.23	transcript	ENST00000297933.11	protein_coding	4/27		INFO_REALIGN_3_PRIME	chr9	TogoVar

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