Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cds cds pos length	aa aa pos length	distance	status	chr	external
LRRTM4_chr2_76742685_77527376	76814794	TACACACA others(11): Show TACACACACACATACACAC	T T	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00621.hp2 HG00735.hp2 others(38): Show HG00558.hp2 HG00621.hp2 HG00735.hp2 HG01074.hp2 HG01109.hp2 HG01192.hp1 HG01346.hp1 HG01346.hp2 HG01496.hp2 HG01516.hp1 HG02055.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02145.hp2 HG02486.hp1 HG02523.hp1 HG02622.hp1 HG02622.hp2 HG02723.hp2 HG02738.hp1 HG02886.hp1 HG03490.hp1 HG03579.hp2 HG03654.hp2 HG03704.hp2 HG03834.hp2 HG03927.hp2 HG04199.hp2 HG04204.hp1 HG06807.hp1 NA18951.hp2 NA18953.hp2 NA18965.hp1 NA18965.hp2 NA18966.hp1 NA18966.hp2 NA18970.hp2 NA18983.hp1 NA19011.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 others(38): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0041 a0001c0001t0001g0046 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0096 a0001c0001t0001g0113 a0001c0001t0002g0007 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0035 a0001c0001t0002g0040 a0001c0001t0002g0049 a0001c0001t0002g0077 a0001c0001t0002g0087 a0001c0001t0002g0111 a0001c0001t0002g0114 a0001c0001t0002g0121 a0001c0001t0002g0123 a0001c0001t0003g0066 a0001c0001t0003g0074 a0001c0001t0004g0010 a0001c0001t0004g0013 a0001c0001t0004g0025 a0001c0001t0004g0027 a0001c0001t0004g0037 a0001c0001t0004g0058 a0001c0001t0004g0094 a0001c0001t0004g0095 a0001c0001t0006g0034	41	128	0.3203	-18	c.155 others(39): Show c.1552-65896_1552-65879delGTGTGTATGTGTGTGTGT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76816819	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	128	0.0078	-18	c.155 others(39): Show c.1552-67921_1552-67904delAAAAAAAAAAAAAAAAAA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76899311	CCACACAC others(11): Show CCACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02735.hp1 HG02280.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0080 a0001c0001t0002g0119 a0001c0001t0002g0080 a0001c0001t0002g0119	2	128	0.0156	-18	c.155 others(41): Show c.1552-150413_1552-150396delTGTGTGTGTGTGTGTGTG		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76974211	CACATATA others(11): Show CACATATATATACATACAT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03579.hp2 HG02055.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0035 a0001c0001t0002g0121 a0001c0001t0002g0035 a0001c0001t0002g0121	2	128	0.0156	-18	c.155 others(41): Show c.1552-225313_1552-225296delATGTATGTATATATATGT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77241229	CACACACA others(11): Show CACACACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01109.hp1 HG01891.hp1 others(11): Show HG00735.hp1 HG01109.hp1 HG01891.hp1 HG02109.hp1 HG02258.hp2 HG02280.hp1 HG02723.hp1 HG02809.hp1 HG02818.hp2 HG02965.hp2 HG03098.hp2 HG03225.hp2 HG03453.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010	a0001c0001t0001g0062 a0001c0001t0001g0116 a0001c0001t0001g0125 others(11): Show a0001c0001t0001g0062 a0001c0001t0001g0116 a0001c0001t0001g0125 a0001c0001t0002g0015 a0001c0001t0002g0105 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0003g0061 a0001c0001t0003g0083 a0001c0001t0003g0090 a0001c0001t0003g0117 a0001c0001t0005g0091 a0001c0001t0009g0055 a0001c0001t0010g0067	14	128	0.1094	-18	c.155 others(41): Show c.1551+277071_1551+277088delATGTGTGTGTGTGTGTGT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77276686	CATATATA others(11): Show CATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02723.hp2 HG03579.hp1 HG01243.hp2 HG02723.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0064 a0001c0001t0002g0059 a0001c0001t0003g0112 a0001c0001t0001g0064 a0001c0001t0002g0059 a0001c0001t0003g0112	3	128	0.0234	-18	c.155 others(41): Show c.1551+241614_1551+241631delATATATATATATATATAT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77292844	TAATAATA others(11): Show TAATAATAATAAAATTAAA	T T	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01884.hp1 HG02886.hp1 others(1): Show HG01243.hp1 HG01884.hp1 HG02886.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008	a0001c0001t0001g0113 a0001c0001t0002g0008 a0001c0001t0003g0088 others(1): Show a0001c0001t0001g0113 a0001c0001t0002g0008 a0001c0001t0003g0088 a0001c0001t0008g0126	4	128	0.0313	-18	c.155 others(41): Show c.1551+225456_1551+225473delTTTAATTTTATTATTATT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77457000	GTGTGTAT others(11): Show GTGTGTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0119 a0001c0001t0002g0119	1	128	0.0078	-18	c.155 others(39): Show c.1551+61300_1551+61317delTATATATATATATACACA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77469719	TATGTATA others(11): Show TATGTATAGCATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00558.hp1 others(105): Show HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00621.hp2 HG00735.hp1 HG01074.hp1 HG01074.hp2 HG01109.hp1 HG01109.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG02965.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03490.hp1 HG03490.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp1 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18953.hp1 NA18953.hp2 NA18961.hp1 NA18961.hp2 NA18965.hp1 NA18966.hp1 NA18966.hp2 NA18968.hp2 NA18970.hp2 NA18983.hp1 NA18983.hp2 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA20129.hp1 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0012	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(105): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0020 a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0038 a0001c0001t0001g0041 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0062 a0001c0001t0001g0064 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0076 a0001c0001t0001g0089 a0001c0001t0001g0092 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0113 a0001c0001t0001g0116 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0002g0007 a0001c0001t0002g0012 a0001c0001t0002g0015 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0029 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0040 a0001c0001t0002g0049 a0001c0001t0002g0059 a0001c0001t0002g0063 a0001c0001t0002g0069 a0001c0001t0002g0070 a0001c0001t0002g0072 a0001c0001t0002g0075 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0080 a0001c0001t0002g0081 a0001c0001t0002g0086 a0001c0001t0002g0087 a0001c0001t0002g0105 a0001c0001t0002g0110 a0001c0001t0002g0111 a0001c0001t0002g0114 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0002g0121 a0001c0001t0002g0122 a0001c0001t0002g0123 a0001c0001t0002g0127 a0001c0001t0003g0033 a0001c0001t0003g0042 a0001c0001t0003g0043 a0001c0001t0003g0047 a0001c0001t0003g0054 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0074 a0001c0001t0003g0083 a0001c0001t0003g0088 a0001c0001t0003g0090 a0001c0001t0003g0093 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0108 a0001c0001t0003g0109 a0001c0001t0003g0112 a0001c0001t0003g0117 a0001c0001t0004g0010 a0001c0001t0004g0013 a0001c0001t0004g0027 a0001c0001t0004g0037 a0001c0001t0004g0045 a0001c0001t0004g0052 a0001c0001t0004g0058 a0001c0001t0004g0073 a0001c0001t0004g0094 a0001c0001t0004g0095 a0001c0001t0004g0115 a0001c0001t0005g0026 a0001c0001t0005g0091 a0001c0001t0006g0034 a0001c0001t0008g0126 a0001c0001t0009g0055 a0001c0001t0010g0067 a0001c0001t0012g0128	108	128	0.8438	-18	c.155 others(39): Show c.1551+48581_1551+48598delTATATATATGCTATACAT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77480822	GGAGAGAG others(11): Show GGAGAGAGAGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0108 a0001c0001t0003g0108	1	128	0.0078	-18	c.155 others(39): Show c.1551+37478_1551+37495delTCTCTCTCTCTCTCTCTC		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3					chr2	TogoVar
LRSAM1_chr9_127446510_127508499	127466492	ATATATAT others(11): Show ATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18997.hp2 NA18997.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0159 a0001c0003t0001g0159	1	340	0.0029	-18	c.529 others(35): Show c.529-1246_529-1229delATATATATATATTTTTTT		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25				INFO_REALIGN_3_PRIME	chr9	TogoVar
LRSAM1_chr9_127446510_127508499	127466494	ATATATAT others(11): Show ATATATATATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0215 a0002c0005t0001g0215	1	340	0.0029	-18	c.529 others(35): Show c.529-1244_529-1227delATATATATATTTTTTTTT		LRSAM1	ENSG00000148356.15	transcript	ENST00000300417.11	protein_coding	9/25				INFO_REALIGN_3_PRIME	chr9	TogoVar
LRTM1_chr3_54913231_54933059	54926505	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0125 a0001c0001t0002g0125	1	348	0.0029	-18	c.8-1 others(31): Show c.8-1308_8-1291delGTGTGTGTGTGTGTGTGT		LRTM1	ENSG00000144771.8	transcript	ENST00000273286.6	protein_coding	1/2					chr3	TogoVar
LRWD1_chr7_102459984_102478168	102466760	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18747.hp2 NA19055.hp1 NA18747.hp2 NA19055.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0065 a0001c0003t0001g0066 a0001c0003t0001g0065 a0001c0003t0001g0066	2	428	0.0047	-18	c.432 others(33): Show c.432+510_432+527delTTTTTTTTTTTTTTTTTT		LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding	3/14				INFO_REALIGN_3_PRIME	chr7	TogoVar
LSAMP_chr3_115797374_116450487	116057939	ACACACAC others(11): Show ACACACACACACACACACC	A A	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0096 a0001c0001t0063g0096	1	104	0.0096	-18	c.388 others(37): Show c.388+28367_388+28384delGGTGTGTGTGTGTGTGTG		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	2/6					chr3	TogoVar
LSAMP_chr3_115797374_116450487	116200093	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0101 a0001c0001t0017g0101	1	104	0.0096	-18	c.156 others(39): Show c.156-113555_156-113538delGTGTGTGTGTGTGTGTGT		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6					chr3	TogoVar
LSAMP_chr3_115797374_116450487	116248477	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0016 a0001c0004t0016	a0001c0004t0016g0039 a0001c0004t0016g0039	1	104	0.0096	-18	c.156 others(39): Show c.156-161939_156-161922delCACACACACACACACACA		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6					chr3	TogoVar
LSG1_chr3_194635791_194677191	194644377	AAAATAAA others(11): Show AAAATAAAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 NA18942.hp1 HG03239.hp2 NA18942.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0047 a0001c0003t0005 a0001c0003t0047	a0001c0003t0005g0197 a0001c0003t0047g0019 a0001c0003t0005g0197 a0001c0003t0047g0019	2	408	0.0049	-18	c.179 others(35): Show c.1797+178_1797+195delATTTATTTATTTTTATTT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	13/13					chr3	TogoVar
LSG1_chr3_194635791_194677191	194645517	CACACACA others(11): Show CACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02698.hp1 HG00597.hp1 HG02698.hp1	a0001 a0010 a0001 a0010	a0001c0003 a0010c0022 a0001c0003 a0010c0022	a0001c0003t0013 a0010c0022t0002 a0001c0003t0013 a0010c0022t0002	a0001c0003t0013g0159 a0010c0022t0002g0221 a0001c0003t0013g0159 a0010c0022t0002g0221	2	408	0.0049	-18	c.162 others(35): Show c.1623+629_1623+646delCTGTCTGTGTGTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13					chr3	TogoVar
LSG1_chr3_194635791_194677191	194645553	CACACACA others(11): Show CACACACACACACACACAG	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG04115.hp1 HG04228.hp2 HG01106.hp2 HG04115.hp1 HG04228.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0015 a0003c0004t0058 a0003c0004t0015 a0003c0004t0058	a0003c0004t0015g0054 a0003c0004t0015g0061 a0003c0004t0058g0058 a0003c0004t0015g0054 a0003c0004t0015g0061 a0003c0004t0058g0058	3	408	0.0074	-18	c.162 others(35): Show c.1623+593_1623+610delCTGTGTGTGTGTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13					chr3	TogoVar
LSG1_chr3_194635791_194677191	194645557	CACACACA others(11): Show CACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG01358.hp2 NA19009.hp2 HG01358.hp2 NA19009.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0010 a0001c0001 a0006c0010	a0001c0001t0004 a0006c0010t0010 a0001c0001t0004 a0006c0010t0010	a0001c0001t0004g0097 a0006c0010t0010g0384 a0001c0001t0004g0097 a0006c0010t0010g0384	2	408	0.0049	-18	c.162 others(35): Show c.1623+589_1623+606delCTGTCTGTGTGTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13					chr3	TogoVar
LSM14A_chr19_34167504_34234288	34192632	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00423.hp1 others(106): Show HG00280.hp2 HG00323.hp2 HG00423.hp1 HG00621.hp1 HG00639.hp2 HG00733.hp1 HG00733.hp2 HG00741.hp1 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01099.hp2 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01169.hp2 HG01192.hp1 HG01243.hp1 HG01257.hp2 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01978.hp1 HG02027.hp1 HG02055.hp2 HG02083.hp1 HG02109.hp2 HG02145.hp2 HG02165.hp2 HG02486.hp2 HG02559.hp2 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02976.hp1 HG03098.hp1 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03453.hp2 HG03516.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp2 HG03710.hp1 HG03831.hp2 HG03834.hp2 HG03927.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp2 HG06807.hp1 NA18522.hp2 NA18939.hp1 NA18942.hp1 NA18948.hp1 NA18951.hp1 NA18953.hp2 NA18954.hp2 NA18955.hp2 NA18979.hp2 NA18987.hp1 NA18989.hp2 NA18994.hp1 NA18999.hp2 NA19004.hp2 NA19009.hp2 NA19012.hp2 NA19030.hp1 NA19043.hp2 NA19058.hp1 NA19060.hp2 NA19067.hp1 NA19084.hp1 NA19240.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 others(13): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0001t0021 a0001c0001t0023 a0001c0001t0026 a0001c0001t0028 a0001c0001t0032 a0001c0001t0035 a0001c0001t0036 a0001c0001t0037	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0009 others(104): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0009 a0001c0001t0002g0011 a0001c0001t0002g0017 a0001c0001t0002g0018 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0025 a0001c0001t0002g0026 a0001c0001t0002g0027 a0001c0001t0002g0029 a0001c0001t0002g0030 a0001c0001t0002g0034 a0001c0001t0002g0114 a0001c0001t0002g0115 a0001c0001t0002g0116 a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0002g0122 a0001c0001t0002g0123 a0001c0001t0002g0124 a0001c0001t0002g0125 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0132 a0001c0001t0002g0133 a0001c0001t0002g0135 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0140 a0001c0001t0002g0141 a0001c0001t0002g0145 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0150 a0001c0001t0002g0151 a0001c0001t0002g0152 a0001c0001t0002g0153 a0001c0001t0002g0306 a0001c0001t0004g0003 a0001c0001t0004g0010 a0001c0001t0004g0012 a0001c0001t0004g0015 a0001c0001t0004g0016 a0001c0001t0004g0021 a0001c0001t0004g0023 a0001c0001t0004g0024 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0004g0033 a0001c0001t0004g0035 a0001c0001t0004g0038 a0001c0001t0004g0134 a0001c0001t0004g0136 a0001c0001t0004g0155 a0001c0001t0008g0007 a0001c0001t0008g0041 a0001c0001t0008g0043 a0001c0001t0008g0047 a0001c0001t0008g0053 a0001c0001t0008g0054 a0001c0001t0008g0055 a0001c0001t0008g0058 a0001c0001t0008g0065 a0001c0001t0008g0069 a0001c0001t0009g0004 a0001c0001t0009g0040 a0001c0001t0009g0048 a0001c0001t0009g0050 a0001c0001t0009g0061 a0001c0001t0009g0066 a0001c0001t0009g0071 a0001c0001t0016g0044 a0001c0001t0016g0049 a0001c0001t0016g0051 a0001c0001t0016g0063 a0001c0001t0017g0052 a0001c0001t0017g0056 a0001c0001t0017g0057 a0001c0001t0017g0077 a0001c0001t0018g0028 a0001c0001t0018g0121 a0001c0001t0018g0131 a0001c0001t0019g0004 a0001c0001t0019g0046 a0001c0001t0019g0059 a0001c0001t0019g0062 a0001c0001t0021g0072 a0001c0001t0021g0073 a0001c0001t0021g0074 a0001c0001t0023g0064 a0001c0001t0023g0068 a0001c0001t0023g0096 a0001c0001t0026g0070 a0001c0001t0028g0008 a0001c0001t0032g0146 a0001c0001t0035g0144 a0001c0001t0036g0095 a0001c0001t0037g0097	109	315	0.3460	-18	c.122 others(35): Show c.122-1828_122-1811delAAAAAAAAAAAAAAAAAA		LSM14A	ENSG00000257103.9	transcript	ENST00000544216.8	protein_coding	1/9				INFO_REALIGN_3_PRIME	chr19	TogoVar
LSM4_chr19_18301236_18328076	18305416	GGAGCCCA others(11): Show GGAGCCCAGGCCCCTTGGA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0184 a0001c0001t0022g0184	1	394	0.0025	-18	c.20 others(29): Show c.2030_*2047delTCCAAGGGGCCTGGGCTC		LSM4	ENSG00000130520.11	transcript	ENST00000593829.6	protein_coding				819		chr19	TogoVar
LSM7_chr19_2316521_2333586	2321209	CGCACCCC others(11): Show CGCACCCCGGCCTCCTGAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18959.hp2 NA18973.hp2 NA19002.hp1 NA18959.hp2 NA18973.hp2 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0060 a0001c0001t0001g0020 a0001c0001t0001g0060	3	436	0.0069	-18	c.45 others(27): Show c.453_*470delATCAGGAGGCCGGGGTGC		LSM7	ENSG00000130332.15	transcript	ENST00000252622.15	protein_coding				311		chr19	TogoVar
LSM7_chr19_2316521_2333586	2326312	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG02258.hp2 HG01934.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0145 a0001c0001t0001g0146	2	436	0.0046	-18	c.97+ others(33): Show c.97+2057_97+2074delCACACACACACACACACA		LSM7	ENSG00000130332.15	transcript	ENST00000252622.15	protein_coding	2/3					chr19	TogoVar
LSP1_chr11_1848084_1897263	1863133	ACCACCTG others(11): Show ACCACCTGAGTCACCACAG	A A	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02970.hp1 HG02970.hp2 others(2): Show HG02647.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03041.hp1	a0001 a0002 a0001 a0002	a0001c0003 a0002c0005 a0002c0016 a0001c0003 a0002c0005 a0002c0016	a0001c0003t0001 a0002c0005t0001 a0002c0016t0001 a0001c0003t0001 a0002c0005t0001 a0002c0016t0001	a0001c0003t0001g0184 a0001c0003t0001g0185 a0001c0003t0001g0186 others(2): Show a0001c0003t0001g0184 a0001c0003t0001g0185 a0001c0003t0001g0186 a0002c0005t0001g0099 a0002c0016t0001g0098	5	360	0.0139	-18	c.53+ others(33): Show c.53+9939_53+9956delACCTGAGTCACCACAGCC		LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding	1/10				INFO_REALIGN_3_PRIME	chr11	TogoVar
LSS_chr21_46183446_46233774	46228815	CCCCGCCC others(11): Show CCCCGCCCCTCCCGCCCCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18987.hp2 NA19066.hp1 NA18987.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0241 a0001c0001t0001g0001 a0001c0001t0001g0241	2	358	0.0056	-18	c.-88 others(25): Show c.-88_-71delAGGGGCGGGAGGGGCGGG		LSS	ENSG00000160285.15	transcript	ENST00000397728.8	protein_coding				42		chr21	TogoVar
LTA_chr6_31567289_31579324	31567667	CACACACA others(11): Show CACACACACACGCACGCAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00280.hp1 others(67): Show HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00408.hp2 HG00597.hp1 HG00621.hp1 HG00738.hp1 HG01070.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp1 HG01168.hp2 HG01243.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01433.hp1 HG01934.hp2 HG01952.hp2 HG01993.hp1 HG02027.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp2 HG02135.hp1 HG02559.hp1 HG02622.hp2 HG02717.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp1 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03486.hp1 HG03688.hp2 HG03704.hp2 HG03927.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 NA18522.hp1 NA18522.hp2 NA18612.hp2 NA18906.hp2 NA18952.hp2 NA18960.hp1 NA18961.hp2 NA18963.hp2 NA18964.hp1 NA18971.hp1 NA18972.hp2 NA18974.hp1 NA18985.hp1 NA18987.hp1 NA18989.hp2 NA18997.hp1 NA18999.hp2 NA19003.hp2 NA19005.hp2 NA19057.hp1 NA19074.hp2 NA19080.hp1 NA19086.hp2 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0008	a0001c0001 a0001c0010 a0003c0003 others(2): Show a0001c0001 a0001c0010 a0003c0003 a0004c0004 a0008c0009	a0001c0001t0001 a0001c0010t0001 a0003c0003t0003 others(2): Show a0001c0001t0001 a0001c0010t0001 a0003c0003t0003 a0004c0004t0003 a0008c0009t0003	a0001c0001t0001g0001 a0001c0010t0001g0001 a0003c0003t0003g0003 others(4): Show a0001c0001t0001g0001 a0001c0010t0001g0001 a0003c0003t0003g0003 a0003c0003t0003g0006 a0003c0003t0003g0008 a0004c0004t0003g0003 a0008c0009t0003g0003	70	407	0.1720	-18	c.-47 others(29): Show c.-4788_-4771delACACACACACGCACGCAT		LTA	ENSG00000226979.9	transcript	ENST00000418386.3	protein_coding				4621		chr6	TogoVar
LTBP1_chr2_32941953_33404509	32975583	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0105 a0001c0001t0014g0105	1	164	0.0061	-18	c.565 others(37): Show c.565+26659_565+26676delTTTTTTTTTTTTTTTTTT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	2/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33151821	TTTTGTGT others(11): Show TTTTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0083 a0001c0003t0001g0083	1	164	0.0061	-18	c.120 others(39): Show c.1201+16863_1201+16880delTTGTGTGTGTGTGTGTGT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33151823	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0141 a0001c0001t0003g0141	1	164	0.0061	-18	c.120 others(39): Show c.1201+16901_1201+16918delGTGTGTGTGTGTGTGTGT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	5/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33254852	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0085 a0001c0001t0013g0085	1	164	0.0061	-18	c.216 others(37): Show c.2167+2022_2167+2039delTTTTTTTTTTTTTTTTTT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	11/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33256724	CTATATAT others(11): Show CTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG03041.hp1 NA18906.hp1 others(1): Show HG02683.hp1 HG03041.hp1 NA18906.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0020 a0001c0001 a0001c0006 a0001c0020	a0001c0001t0003 a0001c0006t0001 a0001c0006t0009 others(1): Show a0001c0001t0003 a0001c0006t0001 a0001c0006t0009 a0001c0020t0001	a0001c0001t0003g0137 a0001c0006t0001g0155 a0001c0006t0009g0048 others(1): Show a0001c0001t0003g0137 a0001c0006t0001g0155 a0001c0006t0009g0048 a0001c0020t0001g0064	4	164	0.0244	-18	c.216 others(35): Show c.2168-523_2168-506delTATATATATATATATATA		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	11/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33382074	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0022 a0001c0005t0001g0022	1	164	0.0061	-18	c.471 others(37): Show c.4712-7089_4712-7072delTTTTTTTTTTTTTTTTTT		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	31/33				INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP1_chr2_32941953_33404509	33400898	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG00438.hp1 others(34): Show HG00280.hp2 HG00408.hp1 HG00438.hp1 HG00558.hp1 HG00741.hp1 HG01071.hp2 HG01106.hp2 HG01123.hp2 HG01167.hp1 HG01261.hp2 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01928.hp2 HG02602.hp2 HG02683.hp1 HG02683.hp2 HG02738.hp2 HG03017.hp2 HG03239.hp1 HG03579.hp1 HG03710.hp1 HG03942.hp2 NA18942.hp1 NA18944.hp1 NA18944.hp2 NA18953.hp1 NA18953.hp2 NA18955.hp2 NA18964.hp2 NA19002.hp2 NA19060.hp1 NA19060.hp2 NA19063.hp2 NA19085.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0005 others(3): Show a0001 a0003 a0005 a0006 a0007 a0011	a0001c0001 a0001c0002 a0001c0003 others(21): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0010 a0001c0011 a0001c0012 a0001c0014 a0001c0015 a0001c0017 a0001c0025 a0001c0026 a0001c0027 a0001c0032 a0001c0038 a0001c0049 a0003c0021 a0005c0023 a0006c0036 a0007c0042 a0011c0040	a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 others(27): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0002 a0001c0002t0003 a0001c0003t0003 a0001c0003t0023 a0001c0003t0027 a0001c0003t0033 a0001c0003t0036 a0001c0004t0035 a0001c0005t0002 a0001c0006t0003 a0001c0007t0002 a0001c0010t0002 a0001c0011t0002 a0001c0012t0003 a0001c0014t0002 a0001c0015t0002 a0001c0017t0023 a0001c0025t0002 a0001c0026t0002 a0001c0027t0039 a0001c0032t0002 a0001c0038t0003 a0001c0049t0040 a0003c0021t0002 a0005c0023t0002 a0006c0036t0002 a0007c0042t0003 a0011c0040t0003	a0001c0001t0002g0007 a0001c0001t0003g0127 a0001c0001t0003g0129 others(34): Show a0001c0001t0002g0007 a0001c0001t0003g0127 a0001c0001t0003g0129 a0001c0001t0003g0137 a0001c0001t0003g0139 a0001c0001t0003g0141 a0001c0002t0002g0037 a0001c0002t0003g0124 a0001c0003t0003g0145 a0001c0003t0023g0044 a0001c0003t0027g0087 a0001c0003t0033g0014 a0001c0003t0036g0049 a0001c0004t0035g0012 a0001c0005t0002g0023 a0001c0005t0002g0028 a0001c0005t0002g0030 a0001c0005t0002g0033 a0001c0006t0003g0132 a0001c0007t0002g0017 a0001c0010t0002g0098 a0001c0011t0002g0034 a0001c0012t0003g0128 a0001c0014t0002g0032 a0001c0015t0002g0035 a0001c0017t0023g0051 a0001c0025t0002g0027 a0001c0026t0002g0016 a0001c0027t0039g0038 a0001c0032t0002g0111 a0001c0038t0003g0148 a0001c0049t0040g0130 a0003c0021t0002g0101 a0005c0023t0002g0029 a0006c0036t0002g0118 a0007c0042t0003g0143 a0011c0040t0003g0126	37	164	0.2256	-18	c.23 others(29): Show c.2354_*2371delAAAAAAAAAAAAAAAAAA		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding				1390		chr2	TogoVar
LTBP1_chr2_32941953_33404509	33400915	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAAAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0037 a0001c0001t0037	a0001c0001t0037g0072 a0001c0001t0037g0072	1	164	0.0061	-18	c.23 others(29): Show c.2371_*2388delAAAAAAAAAAAAAAAAAG		LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding				1407		chr2	TogoVar
LTBP2_chr14_74493183_74617237	74564235	ATATATAT others(11): Show ATATATATTTATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0003 a0001c0010t0003	a0001c0010t0003g0257 a0001c0010t0003g0257	1	282	0.0036	-18	c.831 others(35): Show c.831-8560_831-8543delAATATATATAAATATATA		LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35					chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564245	ATATATAT others(11): Show ATATATATTTATATATATT	A A	intron_variant intron_variant	MODIFIER	HG03927.hp1 NA19070.hp1 NA19070.hp2 HG03927.hp1 NA19070.hp1 NA19070.hp2	a0001 a0014 a0001 a0014	a0001c0002 a0001c0003 a0014c0032 a0001c0002 a0001c0003 a0014c0032	a0001c0002t0004 a0001c0003t0001 a0014c0032t0003 a0001c0002t0004 a0001c0003t0001 a0014c0032t0003	a0001c0002t0004g0037 a0001c0003t0001g0255 a0014c0032t0003g0183 a0001c0002t0004g0037 a0001c0003t0001g0255 a0014c0032t0003g0183	3	282	0.0106	-18	c.831 others(35): Show c.831-8570_831-8553delAATATATATAAATATATA		LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35					chr14	TogoVar
LTBP2_chr14_74493183_74617237	74572306	TCTGTGTG others(11): Show TCTGTGTGTGTGTGTGTGA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00280.hp2 others(44): Show HG00140.hp1 HG00140.hp2 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00609.hp1 HG00642.hp1 HG00733.hp2 HG00738.hp2 HG00741.hp2 HG01070.hp2 HG01071.hp2 HG01081.hp2 HG01106.hp1 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp2 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01928.hp1 HG01934.hp2 HG01975.hp2 HG01981.hp1 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02148.hp1 HG02698.hp1 HG02698.hp2 HG03490.hp2 HG03654.hp1 HG03669.hp2 HG04199.hp2 NA18947.hp1 NA18962.hp1 NA18968.hp2 NA19007.hp1 NA19056.hp1 NA19063.hp1 NA19066.hp1 NA19074.hp2 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0008 a0001c0011 a0003c0005 a0007c0034	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0002t0001 a0001c0002t0003 a0001c0003t0002 a0001c0008t0008 a0001c0011t0002 a0003c0005t0003 a0007c0034t0019	a0001c0001t0001g0063 a0001c0001t0001g0102 a0001c0001t0001g0113 others(42): Show a0001c0001t0001g0063 a0001c0001t0001g0102 a0001c0001t0001g0113 a0001c0001t0001g0150 a0001c0001t0002g0001 a0001c0001t0002g0062 a0001c0001t0003g0078 a0001c0001t0003g0079 a0001c0001t0003g0084 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0101 a0001c0001t0003g0103 a0001c0001t0003g0106 a0001c0001t0003g0112 a0001c0001t0003g0114 a0001c0001t0003g0115 a0001c0001t0003g0149 a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0001t0003g0210 a0001c0001t0008g0092 a0001c0002t0001g0094 a0001c0002t0003g0069 a0001c0002t0003g0093 a0001c0002t0003g0110 a0001c0002t0003g0136 a0001c0003t0002g0076 a0001c0003t0002g0080 a0001c0003t0002g0085 a0001c0003t0002g0089 a0001c0003t0002g0090 a0001c0003t0002g0091 a0001c0003t0002g0104 a0001c0003t0002g0153 a0001c0008t0008g0061 a0001c0008t0008g0082 a0001c0008t0008g0105 a0001c0011t0002g0077 a0001c0011t0002g0179 a0003c0005t0003g0109 a0007c0034t0019g0083	47	282	0.1667	-18	c.830 others(37): Show c.830+13530_830+13547delTCACACACACACACACAG		LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35					chr14	TogoVar
LTBP4_chr19_40596369_40634818	40625248	GTATTTAT others(11): Show GTATTTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01891.hp1 HG01952.hp1 others(13): Show HG01175.hp2 HG01891.hp1 HG01952.hp1 HG01975.hp1 HG02004.hp1 HG02056.hp2 HG02132.hp1 HG02145.hp2 HG02273.hp2 HG02630.hp1 HG03654.hp2 HG03704.hp2 HG03831.hp1 HG04199.hp1 NA18949.hp1 NA19081.hp1	a0002 a0011 a0017 a0002 a0011 a0017	a0002c0002 a0002c0040 a0002c0041 others(2): Show a0002c0002 a0002c0040 a0002c0041 a0011c0019 a0017c0045	a0002c0002t0001 a0002c0040t0001 a0002c0041t0001 others(2): Show a0002c0002t0001 a0002c0040t0001 a0002c0041t0001 a0011c0019t0001 a0017c0045t0001	a0002c0002t0001g0032 a0002c0002t0001g0033 a0002c0002t0001g0223 others(13): Show a0002c0002t0001g0032 a0002c0002t0001g0033 a0002c0002t0001g0223 a0002c0002t0001g0224 a0002c0002t0001g0229 a0002c0002t0001g0240 a0002c0002t0001g0247 a0002c0002t0001g0254 a0002c0002t0001g0277 a0002c0002t0001g0280 a0002c0002t0001g0297 a0002c0040t0001g0283 a0002c0041t0001g0220 a0011c0019t0001g0233 a0011c0019t0001g0243 a0017c0045t0001g0249	16	338	0.0473	-18	c.383 others(35): Show c.3833-605_3833-588delTTATATATATATATATAT		LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29				INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP4_chr19_40596369_40634818	40625252	TTATATAT others(11): Show TTATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03130.hp1 HG03453.hp1 HG02630.hp2 HG03130.hp1 HG03453.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0006 a0002c0002 a0008c0028 a0001c0006 a0002c0002 a0008c0028	a0001c0006t0003 a0002c0002t0003 a0008c0028t0001 a0001c0006t0003 a0002c0002t0003 a0008c0028t0001	a0001c0006t0003g0289 a0002c0002t0003g0304 a0008c0028t0001g0320 a0001c0006t0003g0289 a0002c0002t0003g0304 a0008c0028t0001g0320	3	338	0.0089	-18	c.383 others(35): Show c.3833-557_3833-540delATATATATATATATATAT		LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29				INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBR_chr12_6379162_6396566	6389967	AAGAGAGA others(11): Show AAGAGAGAGAGAGAAAGAG	A A	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0081	1	452	0.0022	-18	c.802 others(33): Show c.802-128_802-111delAGAGAGAGAGAGAGAAAG		LTBR	ENSG00000111321.11	transcript	ENST00000228918.9	protein_coding	8/9				INFO_REALIGN_3_PRIME	chr12	TogoVar
LTC4S_chr5_179788986_179801647	179791100	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG01074.hp1 HG01517.hp1 others(5): Show HG00140.hp2 HG01074.hp1 HG01517.hp1 HG02056.hp2 HG02965.hp1 NA18957.hp2 NA19058.hp1 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	8	418	0.0191	-18	c.-29 others(29): Show c.-2980_-2963delTTTTTTTTTTTTTTTTTT		LTC4S	ENSG00000213316.10	transcript	ENST00000292596.15	protein_coding				2885		chr5	TogoVar
LTF_chr3_46430645_46469905	46441924	AGAGAGAG others(11): Show AGAGAGAGAGAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0006 a0006	a0006c0009 a0006c0009	a0006c0009t0002 a0006c0009t0002	a0006c0009t0002g0247 a0006c0009t0002g0247	1	428	0.0023	-18	c.165 others(35): Show c.1656-459_1656-442delACACACACTCTCTCTCTC		LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16					chr3	TogoVar
LTF_chr3_46430645_46469905	46441926	AGAGAGAG others(11): Show AGAGAGAGAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA21309.hp2 NA19030.hp1 NA21309.hp2	a0001 a0008 a0001 a0008	a0001c0019 a0008c0018 a0001c0019 a0008c0018	a0001c0019t0003 a0008c0018t0001 a0001c0019t0003 a0008c0018t0001	a0001c0019t0003g0229 a0008c0018t0001g0286 a0001c0019t0003g0229 a0008c0018t0001g0286	2	428	0.0047	-18	c.165 others(35): Show c.1656-461_1656-444delACACACACACTCTCTCTC		LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16					chr3	TogoVar
LTF_chr3_46430645_46469905	46441928	AGAGAGAG others(11): Show AGAGAGAGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02572.hp2 HG02148.hp2 HG02572.hp2	a0001 a0002 a0001 a0002	a0001c0007 a0002c0006 a0001c0007 a0002c0006	a0001c0007t0001 a0002c0006t0001 a0001c0007t0001 a0002c0006t0001	a0001c0007t0001g0220 a0002c0006t0001g0136 a0001c0007t0001g0220 a0002c0006t0001g0136	2	428	0.0047	-18	c.165 others(35): Show c.1656-463_1656-446delACACACACACACTCTCTC		LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16					chr3	TogoVar
LTF_chr3_46430645_46469905	46441930	AGAGAGTG others(11): Show AGAGAGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01069.hp1 HG02717.hp1 others(3): Show HG00741.hp2 HG01069.hp1 HG02717.hp1 HG03195.hp2 HG03540.hp1 HG03579.hp2	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0021	a0001c0007 a0002c0006 a0006c0031 others(1): Show a0001c0007 a0002c0006 a0006c0031 a0021c0027	a0001c0007t0003 a0002c0006t0001 a0006c0031t0002 others(1): Show a0001c0007t0003 a0002c0006t0001 a0006c0031t0002 a0021c0027t0003	a0001c0007t0003g0026 a0002c0006t0001g0162 a0006c0031t0002g0225 others(1): Show a0001c0007t0003g0026 a0002c0006t0001g0162 a0006c0031t0002g0225 a0021c0027t0003g0232	6	428	0.0140	-18	c.165 others(35): Show c.1656-465_1656-448delACACACACACACACTCTC		LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16					chr3	TogoVar
LTF_chr3_46430645_46469905	46441934	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02257.hp1 HG02647.hp2 others(4): Show HG01891.hp1 HG02257.hp1 HG02647.hp2 HG02970.hp2 HG03579.hp1 HG06807.hp1 NA18940.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0016	a0001c0002 a0002c0003 a0004c0024 others(1): Show a0001c0002 a0002c0003 a0004c0024 a0016c0044	a0001c0002t0001 a0002c0003t0001 a0004c0024t0001 others(1): Show a0001c0002t0001 a0002c0003t0001 a0004c0024t0001 a0016c0044t0002	a0001c0002t0001g0024 a0001c0002t0001g0208 a0002c0003t0001g0140 others(2): Show a0001c0002t0001g0024 a0001c0002t0001g0208 a0002c0003t0001g0140 a0004c0024t0001g0180 a0016c0044t0002g0175	7	428	0.0164	-18	c.165 others(35): Show c.1656-469_1656-452delACACACACACACACACAC		LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16					chr3	TogoVar
LTN1_chr21_28923144_28997877	28970534	AAAATTTA others(11): Show AAAATTTAAATTACTTACC	A A	frameshift_variant others(3): Show frameshift_variant splice_donor_variant splice_region_variant intron_variant	HIGH	NA18997.hp1 NA18997.hp1	a0016 a0016	a0016c0016 a0016c0016	a0016c0016t0001 a0016c0016t0001	a0016c0016t0001g0107 a0016c0016t0001g0107	1	404	0.0025	-18	c.117 others(30): Show c.1175_1175+17delGGTAAGTAATTTAAATTT	p.Leu others(5): Show p.Leu393fs	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding	8/30	1175/5301	392/1766			chr21	TogoVar
LUC7L2_chr7_139354894_139428454	139379549	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02622.hp1 NA19062.hp2 HG02622.hp1 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0031 a0001c0001t0002g0085 a0001c0001t0002g0031 a0001c0001t0002g0085	2	276	0.0073	-18	c.156 others(35): Show c.156+3414_156+3431delTTTTTTTTTTTTTTTTTT		LUC7L2	ENSG00000146963.18	transcript	ENST00000354926.9	protein_coding	2/9				INFO_REALIGN_3_PRIME	chr7	TogoVar

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