Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LUC7L2_chr7_139354894_139428454	139399449	ATTTTTTT others(11): Show ATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	276	0.0036	-18	c.255 others(33): Show c.255+773_255+790delTTTTTTTTTTTTTTTTTT	LUC7L2	ENSG00000146963.18	transcript	ENST00000354926.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
LUC7L2_chr7_139354894_139428454	139416040	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0197 a0001c0001t0001g0197	1	276	0.0036	-18	c.810 others(35): Show c.810-1465_810-1448delATATATATATATATATAT	LUC7L2	ENSG00000146963.18	transcript	ENST00000354926.9	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr7	TogoVar
LUC7L3_chr17_50714603_50761219	50718759	ATATATAT others(11): Show ATATATATATTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0220 a0001c0001t0030g0220	1	392	0.0026	-18	c.-97 others(27): Show c.-973_-956delTATATATATTTTTTTTTT	LUC7L3	ENSG00000108848.16	transcript	ENST00000505658.6	protein_coding		843		chr17	TogoVar
LUC7L3_chr17_50714603_50761219	50729896	TTATATAT others(11): Show TTATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00544.hp1 HG00639.hp2 others(22): Show HG00423.hp1 HG00544.hp1 HG00639.hp2 HG00738.hp2 HG01243.hp2 HG01943.hp2 HG02109.hp2 HG02293.hp2 HG02559.hp1 NA18947.hp1 NA18964.hp2 NA18965.hp1 NA18968.hp2 NA18969.hp1 NA18970.hp2 NA18971.hp1 NA18974.hp1 NA18979.hp1 NA19004.hp1 NA19072.hp2 NA19079.hp1 NA19079.hp2 NA19081.hp2 NA20300.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0016 a0001c0001t0018 a0001c0001t0029	a0001c0001t0001g0138 a0001c0001t0003g0008 a0001c0001t0003g0015 others(18): Show a0001c0001t0001g0138 a0001c0001t0003g0008 a0001c0001t0003g0015 a0001c0001t0003g0016 a0001c0001t0003g0079 a0001c0001t0003g0080 a0001c0001t0003g0081 a0001c0001t0003g0189 a0001c0001t0003g0207 a0001c0001t0005g0069 a0001c0001t0005g0071 a0001c0001t0005g0168 a0001c0001t0005g0175 a0001c0001t0005g0178 a0001c0001t0005g0183 a0001c0001t0005g0184 a0001c0001t0006g0318 a0001c0001t0016g0217 a0001c0001t0016g0219 a0001c0001t0018g0177 a0001c0001t0029g0218	25	392	0.0638	-18	c.100 others(35): Show c.100-7032_100-7015delATATATATATATATATAT	LUC7L3	ENSG00000108848.16	transcript	ENST00000505658.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr17	TogoVar
LUM_chr12_91097629_91116494	91107255	GAAAGAAA others(11): Show GAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01167.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0025 a0001c0001t0003g0025	1	384	0.0026	-18	c.862 others(33): Show c.862+845_862+862delTTCTTTCTTTCTTTCTTT	LUM	ENSG00000139329.5	transcript	ENST00000266718.5	protein_coding	2/2			chr12	TogoVar
LUM_chr12_91097629_91116494	91107263	GAAAGAAA others(11): Show GAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	NA18986.hp1 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	384	0.0026	-18	c.862 others(33): Show c.862+837_862+854delTTCTTTCTTTCTTTCTTT	LUM	ENSG00000139329.5	transcript	ENST00000266718.5	protein_coding	2/2			chr12	TogoVar
LUZP1_chr1_23079030_23173856	23142696	TATATACA others(11): Show TATATACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0008 a0006c0006t0008	a0006c0006t0008g0083 a0006c0006t0008g0083	1	322	0.0031	-18	c.-22 others(39): Show c.-226+26052_-226+26069delGTGTGTGTGTGTGTATAT	LUZP1	ENSG00000169641.15	transcript	ENST00000302291.9	protein_coding	1/3			chr1	TogoVar
LUZP1_chr1_23079030_23173856	23142698	TATACACA others(11): Show TATACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0310 a0004c0004t0001g0310	1	322	0.0031	-18	c.-22 others(39): Show c.-226+26050_-226+26067delGTGTGTGTGTGTGTGTAT	LUZP1	ENSG00000169641.15	transcript	ENST00000302291.9	protein_coding	1/3			chr1	TogoVar
LUZP2_chr11_24492053_25087638	24546951	TTGTTGTT others(11): Show TTGTTGTTGTTGTTGGTGG	T T	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02523.hp2 HG02683.hp2 others(2): Show HG02080.hp2 HG02523.hp2 HG02683.hp2 HG02976.hp1 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 others(1): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0001t0014	a0001c0001t0002g0019 a0001c0001t0002g0099 a0001c0001t0007g0015 others(2): Show a0001c0001t0002g0019 a0001c0001t0002g0099 a0001c0001t0007g0015 a0001c0001t0011g0107 a0001c0001t0014g0044	5	116	0.0431	-18	c.62+ others(35): Show c.62+49649_62+49666delTTGTTGTTGTTGGTGGTG	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24566601	TATATGTA others(11): Show TATATGTATGTATGTATAG	T T	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0090 a0001c0001t0038g0090	1	116	0.0086	-18	c.62+ others(35): Show c.62+69301_62+69318delGTATGTATGTATAGATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24581670	AAAATATA others(11): Show AAAATATAAATATAAATAT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp2 HG00621.hp1 others(28): Show HG00423.hp1 HG00423.hp2 HG00621.hp1 HG00621.hp2 HG01109.hp2 HG01256.hp2 HG01258.hp2 HG01516.hp1 HG01975.hp1 HG02055.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02129.hp2 HG02165.hp1 HG02165.hp2 HG02683.hp1 HG02965.hp2 HG03041.hp2 HG03098.hp2 HG03453.hp2 HG03540.hp2 HG03834.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 NA18612.hp2 NA18981.hp1 NA19043.hp1 NA20752.hp1 NA21309.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0002c0002 others(2): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0004c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(14): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 a0001c0001t0014 a0001c0001t0017 a0001c0001t0020 a0001c0003t0004 a0002c0002t0001 a0002c0002t0008 a0002c0002t0009 a0002c0002t0022 a0002c0002t0026 a0002c0002t0027 a0003c0004t0018 a0004c0005t0002	a0001c0001t0002g0016 a0001c0001t0002g0040 a0001c0001t0002g0048 others(28): Show a0001c0001t0002g0016 a0001c0001t0002g0040 a0001c0001t0002g0048 a0001c0001t0002g0065 a0001c0001t0002g0099 a0001c0001t0003g0081 a0001c0001t0005g0102 a0001c0001t0007g0012 a0001c0001t0007g0103 a0001c0001t0011g0054 a0001c0001t0014g0002 a0001c0001t0017g0071 a0001c0001t0020g0097 a0001c0003t0004g0050 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0011 a0002c0002t0001g0013 a0002c0002t0001g0014 a0002c0002t0001g0023 a0002c0002t0001g0026 a0002c0002t0001g0064 a0002c0002t0001g0066 a0002c0002t0008g0021 a0002c0002t0008g0104 a0002c0002t0009g0079 a0002c0002t0022g0017 a0002c0002t0026g0010 a0002c0002t0027g0100 a0003c0004t0018g0098 a0004c0005t0002g0087	31	116	0.2672	-18	c.62+ others(35): Show c.62+84412_62+84429delATAAATATAAATATAAAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24640957	GTATAGAT others(11): Show GTATAGATATAGATATAGA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02451.hp2 HG02717.hp2 others(3): Show HG01891.hp2 HG02451.hp2 HG02717.hp2 HG06807.hp1 NA19030.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0001c0003t0015 a0001c0003t0019	a0001c0001t0003g0032 a0001c0001t0004g0105 a0001c0001t0006g0035 others(3): Show a0001c0001t0003g0032 a0001c0001t0004g0105 a0001c0001t0006g0035 a0001c0001t0010g0037 a0001c0003t0015g0069 a0001c0003t0019g0096	6	116	0.0517	-18	c.63- others(35): Show c.63-88171_63-88154delGATATAGATATAGATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24926322	TGTGTGTA others(11): Show TGTGTGTATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01109.hp1 HG01891.hp2 others(12): Show HG01071.hp2 HG01109.hp1 HG01891.hp2 HG02145.hp1 HG02258.hp1 HG02559.hp2 HG02896.hp1 HG02970.hp1 HG03130.hp2 HG03225.hp1 HG03453.hp1 NA18522.hp1 NA18522.hp2 NA19043.hp2 NA21309.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0002c0002 others(2): Show a0001c0001 a0001c0003 a0002c0002 a0002c0007 a0005c0006	a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 others(7): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0013 a0001c0001t0039 a0001c0003t0006 a0002c0002t0001 a0002c0002t0009 a0002c0007t0028 a0005c0006t0029	a0001c0001t0003g0036 a0001c0001t0003g0095 a0001c0001t0005g0030 others(12): Show a0001c0001t0003g0036 a0001c0001t0003g0095 a0001c0001t0005g0030 a0001c0001t0005g0049 a0001c0001t0005g0101 a0001c0001t0010g0037 a0001c0001t0013g0086 a0001c0001t0039g0034 a0001c0003t0006g0077 a0002c0002t0001g0045 a0002c0002t0009g0005 a0002c0002t0009g0043 a0002c0002t0009g0079 a0002c0007t0028g0068 a0005c0006t0029g0058	15	116	0.1293	-18	c.522 others(37): Show c.522+11800_522+11817delTACGTGTGTATATATATA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	25044251	GTGTGTGT others(11): Show GTGTGTGTATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01106.hp1 HG01256.hp2 others(23): Show HG01071.hp1 HG01106.hp1 HG01256.hp2 HG01261.hp1 HG01516.hp1 HG01943.hp2 HG02055.hp1 HG02080.hp2 HG02083.hp1 HG02273.hp2 HG02451.hp1 HG02683.hp2 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03225.hp2 HG03453.hp1 HG03486.hp1 HG03834.hp1 NA18906.hp2 NA19070.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20752.hp1 NA20752.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0002c0007 others(1): Show a0001c0001 a0002c0002 a0002c0007 a0004c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(5): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 a0001c0001t0034 a0002c0002t0008 a0002c0007t0028 a0004c0005t0002	a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0016 others(23): Show a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0020 a0001c0001t0002g0027 a0001c0001t0002g0028 a0001c0001t0002g0048 a0001c0001t0002g0059 a0001c0001t0002g0065 a0001c0001t0002g0073 a0001c0001t0002g0099 a0001c0001t0002g0106 a0001c0001t0002g0113 a0001c0001t0003g0031 a0001c0001t0003g0032 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0003g0114 a0001c0001t0005g0102 a0001c0001t0011g0082 a0001c0001t0011g0107 a0001c0001t0034g0053 a0002c0002t0008g0116 a0002c0007t0028g0068 a0004c0005t0002g0087	26	116	0.2241	-18	c.766 others(35): Show c.766-5785_766-5768delGTGTGTATATATATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LY6E_chr8_143013529_143027409	143014625	GGAGGAGG others(11): Show GGAGGAGGGAGTCCCGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	377	0.0027	-18	c.-40 others(29): Show c.-4018_-4001delGAGGAGGGAGTCCCGTGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3903		chr8	TogoVar
LY6E_chr8_143013529_143027409	143014691	GGAGGAGG others(11): Show GGAGGAGGGAGTCCCGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 NA19011.hp2 NA19057.hp1 HG00544.hp2 NA19011.hp2 NA19057.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0003 a0001c0002t0001g0003	3	377	0.0080	-18	c.-39 others(29): Show c.-3952_-3935delGAGGAGGGAGTCCCGTGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3837		chr8	TogoVar
LY6E_chr8_143013529_143027409	143014970	GGAGGAGG others(11): Show GGAGGAGGGAGTCCCGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01255.hp2 HG02572.hp1 others(12): Show HG01192.hp2 HG01255.hp2 HG02572.hp1 HG02622.hp2 HG02647.hp2 HG02723.hp1 HG02723.hp2 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp1 HG03098.hp1 HG03225.hp1 HG03486.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0020 a0001c0001t0001g0028	15	377	0.0398	-18	c.-36 others(29): Show c.-3673_-3656delGAGGAGGGAGTCCCGTGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3558		chr8	TogoVar
LY6E_chr8_143013529_143027409	143015273	GGGGGAGG others(11): Show GGGGGAGGGAGTCCCGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02040.hp1 HG03654.hp2 HG02040.hp1 HG03654.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0003 a0001c0002t0001g0003	2	377	0.0053	-18	c.-33 others(29): Show c.-3370_-3353delGGGGAGGGAGTCCCGTGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3255		chr8	TogoVar
LY6E_chr8_143013529_143027409	143015315	GGAGGAGG others(11): Show GGAGGAGGGAGTCCCATGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 HG03225.hp2 HG03471.hp2 HG02451.hp2 HG03225.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	3	377	0.0080	-18	c.-33 others(29): Show c.-3328_-3311delGAGGAGGGAGTCCCATGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3213		chr8	TogoVar
LY6E_chr8_143013529_143027409	143015383	AGGGAGTG others(11): Show AGGGAGTGCCGTGTGAGGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	377	0.0027	-18	c.-32 others(29): Show c.-3260_-3243delGGGAGTGCCGTGTGAGGG	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		3145		chr8	TogoVar
LY6E_chr8_143013529_143027409	143015702	GGAGGAGG others(11): Show GGAGGAGGGAGTGCTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 NA20129.hp1 HG02809.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0018	2	377	0.0053	-18	c.-29 others(29): Show c.-2941_-2924delGAGGAGGGAGTGCTGTGT	LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding		2826		chr8	TogoVar
LY6G6C_chr6_31713648_31726746	31715950	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	399	0.0025	-18	c.31 others(29): Show c.3128_*3145delACACACACACACACACAC	LY6G6C	ENSG00000204421.3	transcript	ENST00000375819.3	protein_coding		2697		chr6	TogoVar
LY6G6D_chr6_31710348_31722919	31715950	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	401	0.0025	-18	c.178 others(33): Show c.178+349_178+366delGTGTGTGTGTGTGTGTGT	LY6G6D	ENSG00000244355.8	transcript	ENST00000375825.8	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr6	TogoVar
LY86_chr6_6583720_6659982	6647968	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	424	0.0024	-18	c.353 others(35): Show c.353-1630_353-1613delACACACACACACACACAC	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr6	TogoVar
LY96_chr8_73986392_74034079	73992836	CTGTGTGT others(11): Show CTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01243.hp1 HG01884.hp2 others(10): Show HG01081.hp1 HG01243.hp1 HG01884.hp2 HG01975.hp1 HG02280.hp2 HG02615.hp1 HG02896.hp2 HG02897.hp2 HG02965.hp2 HG03579.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0001 a0001c0001t0002 a0004c0003t0003 a0001c0001t0001 a0001c0001t0002 a0004c0003t0003	a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 others(10): Show a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0002g0089 a0001c0001t0002g0090 a0001c0001t0002g0092 a0001c0001t0002g0098 a0004c0003t0003g0004 a0004c0003t0003g0005 a0004c0003t0003g0006	13	314	0.0414	-18	c.112 others(35): Show c.112+1305_112+1322delTGTGTGTGTGTGTGTGTG	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	74002089	TTCTTTCT others(11): Show TTCTTTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0200 a0001c0001t0001g0200	1	314	0.0032	-18	c.113 others(35): Show c.113-2703_113-2686delTTCTCTCTCTCTCTCTCT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY9_chr1_160791174_160833255	160805741	TCACACAC others(11): Show TCACACACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp2 HG02027.hp2 others(9): Show HG00609.hp1 HG00609.hp2 HG02027.hp2 HG02071.hp1 HG02735.hp2 HG02896.hp2 NA18967.hp1 NA18972.hp2 NA18974.hp2 NA19002.hp1 NA19030.hp1 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0003 a0001c0001t0001 a0001c0004t0003	a0001c0001t0001g0015 a0001c0001t0001g0040 a0001c0001t0001g0202 others(5): Show a0001c0001t0001g0015 a0001c0001t0001g0040 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0004t0003g0203 a0001c0004t0003g0212	12	394	0.0305	-18	c.454 others(35): Show c.454+5683_454+5700delACACACACACACACACAC	LY9	ENSG00000122224.18	transcript	ENST00000263285.11	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
LYN_chr8_55874835_56019169	55909010	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0022 a0001c0002t0022	a0001c0002t0022g0280 a0001c0002t0022g0280	1	288	0.0035	-18	c.-6+ others(35): Show c.-6+28932_-6+28949delACACACACACACACACAC	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYPD4_chr19_41832074_41849683	41836287	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00735.hp1 others(14): Show HG00099.hp1 HG00099.hp2 HG00735.hp1 HG00741.hp1 HG01256.hp1 HG01258.hp1 HG01346.hp2 HG01433.hp2 HG01516.hp2 HG01517.hp1 HG01934.hp2 HG02735.hp2 HG03239.hp2 HG03491.hp2 HG03492.hp2 NA20752.hp2 NA20805.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0005 a0001c0002t0002g0013 others(6): Show a0001c0002t0002g0002 a0001c0002t0002g0005 a0001c0002t0002g0013 a0001c0002t0002g0014 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0040 a0001c0002t0002g0111 a0001c0002t0002g0113	17	428	0.0397	-18	c.83 others(27): Show c.838_*855delTTTTTTTTTTTTTTTTTT	LYPD4	ENSG00000273111.6	transcript	ENST00000609812.6	protein_coding		786		chr19	TogoVar
LYPD4_chr19_41832074_41849683	41843061	AAAAAAAA others(11): Show AAAAAAAAAAAAAAAAACC	A A	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0080 a0001c0002t0002g0080	1	428	0.0023	-18	c.-12 others(35): Show c.-121+499_-121+516delGGTTTTTTTTTTTTTTTT	LYPD4	ENSG00000273111.6	transcript	ENST00000609812.6	protein_coding	1/4			chr19	TogoVar
LYPD6B_chr2_149033699_149220262	149037408	CGTGTGTG others(11): Show CGTGTGTGTGTGTGTGTGT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG02145.hp2 HG02258.hp1 others(5): Show HG01261.hp2 HG02145.hp2 HG02258.hp1 HG02622.hp2 HG02886.hp1 HG03540.hp1 NA18906.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0053 a0001c0001t0001g0134 others(5): Show a0001c0001t0001g0011 a0001c0001t0001g0053 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0145	8	264	0.0303	-18	c.-14 others(29): Show c.-1459_-1442delGTGTGTGTGTGTGTGTGT	LYPD6B	ENSG00000150556.17	transcript	ENST00000409642.8	protein_coding		1290		chr2	TogoVar
LYPLA1_chr8_54041367_54106947	54091582	AAGGAAGG others(11): Show AAGGAAGGAAGGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0198 a0001c0001t0001g0198	1	306	0.0033	-18	c.101 others(35): Show c.101+9308_101+9325delCTTCCTTCCTTCCTTCCT	LYPLA1	ENSG00000120992.18	transcript	ENST00000316963.8	protein_coding	2/8			chr8	TogoVar
LYRM1_chr16_20895771_20930006	20904691	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01496.hp2 HG00741.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0205 a0001c0001t0001g0206	2	382	0.0052	-18	c.-1+ others(33): Show c.-1+3820_-1+3837delGTGTGTGTGTGTGTGTGT	LYRM1	ENSG00000102897.10	transcript	ENST00000567954.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr16	TogoVar
LYRM4_chr6_5103419_5265950	5189269	GTTAGCCT others(11): Show GTTAGCCTAAGGTTAGTGC	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02257.hp1 HG02818.hp2 others(2): Show HG01884.hp1 HG02257.hp1 HG02818.hp2 NA19043.hp1 NA20129.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0280 a0002c0002t0009g0281 a0002c0002t0009g0282 others(2): Show a0002c0002t0009g0280 a0002c0002t0009g0281 a0002c0002t0009g0282 a0002c0002t0009g0283 a0002c0002t0009g0284	5	286	0.0175	-18	c.207 others(37): Show c.207+27331_207+27348delGCACTAACCTTAGGCTAA	LYRM4	ENSG00000214113.11	transcript	ENST00000330636.9	protein_coding	2/2			chr6	TogoVar
LYRM4_chr6_5103419_5265950	5245113	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0094 a0001c0001t0001g0094	1	286	0.0035	-18	c.86+ others(35): Show c.86+15517_86+15534delATATATATATATATATAT	LYRM4	ENSG00000214113.11	transcript	ENST00000330636.9	protein_coding	1/2			chr6	TogoVar
LYRM7_chr5_131165944_131210428	131192032	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00609.hp1 HG00621.hp2 others(40): Show HG00438.hp2 HG00609.hp1 HG00621.hp2 HG00735.hp2 HG00738.hp2 HG01074.hp2 HG01106.hp1 HG01123.hp2 HG01192.hp1 HG01361.hp2 HG01516.hp1 HG01517.hp1 HG02074.hp1 HG02080.hp2 HG02109.hp1 HG02132.hp2 HG02145.hp1 HG02300.hp2 HG02683.hp1 HG02735.hp2 HG03492.hp2 HG03669.hp2 HG03831.hp1 HG04204.hp1 NA18612.hp1 NA18747.hp1 NA18747.hp2 NA18940.hp1 NA18949.hp1 NA18963.hp1 NA18963.hp2 NA18967.hp2 NA18971.hp1 NA18975.hp2 NA18978.hp1 NA18979.hp2 NA19003.hp1 NA19012.hp2 NA19030.hp2 NA19058.hp2 NA19088.hp2 NA20129.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0008 a0001c0001t0010 others(8): Show a0001c0001t0005 a0001c0001t0008 a0001c0001t0010 a0001c0001t0023 a0001c0001t0036 a0001c0001t0061 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0069 a0001c0001t0070	a0001c0001t0005g0070 a0001c0001t0005g0073 a0001c0001t0005g0075 others(40): Show a0001c0001t0005g0070 a0001c0001t0005g0073 a0001c0001t0005g0075 a0001c0001t0005g0076 a0001c0001t0005g0077 a0001c0001t0005g0082 a0001c0001t0005g0083 a0001c0001t0005g0084 a0001c0001t0005g0085 a0001c0001t0005g0196 a0001c0001t0005g0246 a0001c0001t0005g0248 a0001c0001t0005g0250 a0001c0001t0005g0253 a0001c0001t0005g0254 a0001c0001t0005g0257 a0001c0001t0005g0258 a0001c0001t0005g0262 a0001c0001t0008g0015 a0001c0001t0008g0068 a0001c0001t0008g0069 a0001c0001t0008g0074 a0001c0001t0008g0078 a0001c0001t0008g0080 a0001c0001t0008g0247 a0001c0001t0008g0249 a0001c0001t0010g0071 a0001c0001t0010g0079 a0001c0001t0010g0081 a0001c0001t0010g0251 a0001c0001t0010g0252 a0001c0001t0010g0256 a0001c0001t0010g0259 a0001c0001t0023g0260 a0001c0001t0023g0261 a0001c0001t0023g0263 a0001c0001t0036g0034 a0001c0001t0061g0264 a0001c0001t0066g0072 a0001c0001t0067g0255 a0001c0001t0068g0265 a0001c0001t0069g0245 a0001c0001t0070g0015	43	300	0.1433	-18	c.244 others(35): Show c.244+4955_244+4972delCACACACACACACACACA	LYRM7	ENSG00000186687.16	transcript	ENST00000379380.9	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr5	TogoVar
LYRM7_chr5_131165944_131210428	131204467	TACACACA others(11): Show TACACACACACACACACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02559.hp2 HG02572.hp2 HG02809.hp1 others(2): Show HG02559.hp2 HG02572.hp2 HG02809.hp1 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0026 a0001c0001t0059 a0001c0001t0025 a0001c0001t0026 a0001c0001t0059	a0001c0001t0025g0096 a0001c0001t0025g0097 a0001c0001t0026g0002 others(1): Show a0001c0001t0025g0096 a0001c0001t0025g0097 a0001c0001t0026g0002 a0001c0001t0059g0094	5	300	0.0167	-18	c.48 others(29): Show c.4896_*4913delCACACACACACACACACA	LYRM7	ENSG00000186687.16	transcript	ENST00000379380.9	protein_coding	5/5	4896	INFO_REALIGN_3_PRIME	chr5	TogoVar
LYSET_chr14_93180317_93193463	93192483	CCTGGCAT others(11): Show CCTGGCATGGCGGCTCACA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00280.hp1 others(328): Show HG00099.hp1 HG00140.hp2 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp1 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01168.hp2 HG01175.hp1 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp1 HG01257.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG01993.hp2 HG02004.hp2 HG02015.hp2 HG02040.hp2 HG02055.hp1 HG02056.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02155.hp1 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02300.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02895.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03688.hp1 HG03688.hp2 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18941.hp1 NA18941.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp1 NA18944.hp1 NA18944.hp2 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18947.hp1 NA18948.hp1 NA18948.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18957.hp2 NA18960.hp1 NA18960.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18967.hp2 NA18968.hp2 NA18970.hp2 NA18971.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18983.hp2 NA18984.hp2 NA18988.hp2 NA18989.hp1 NA18990.hp1 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp2 NA18999.hp1 NA18999.hp2 NA19000.hp1 NA19002.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19005.hp1 NA19005.hp2 NA19006.hp1 NA19010.hp1 NA19010.hp2 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19057.hp1 NA19057.hp2 NA19058.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19062.hp2 NA19064.hp1 NA19065.hp1 NA19066.hp1 NA19067.hp1 NA19067.hp2 NA19068.hp1 NA19070.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19086.hp1 NA19088.hp2 NA19089.hp2 NA19091.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20805.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0015 a0001c0002t0007 a0001c0004t0001 a0002c0003t0012	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(24): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0002g0001 a0001c0001t0002g0010 a0001c0001t0003g0001 a0001c0001t0003g0017 a0001c0001t0004g0004 a0001c0001t0005g0004 a0001c0001t0006g0003 a0001c0001t0008g0001 a0001c0001t0009g0013 a0001c0001t0010g0001 a0001c0001t0011g0001 a0001c0001t0013g0001 a0001c0001t0015g0001 a0001c0002t0007g0008 a0001c0002t0007g0012 a0001c0004t0001g0008 a0002c0003t0012g0016	331	429	0.7716	-18	c.58 others(29): Show c.5813_*5830delCTGGCATGGCGGCTCACA	LYSET	ENSG00000153485.6	transcript	ENST00000415050.3	protein_coding		4021		chr14	TogoVar
LYST_chr1_235656041_235871906	235666225	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0008 a0008	a0008c0034 a0008c0034	a0008c0034t0001 a0008c0034t0001	a0008c0034t0001g0097 a0008c0034t0001g0097	1	236	0.0042	-18	c.110 others(39): Show c.11039-1622_11039-1605delGTGTGTGTGTGTGTGTGT	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	50/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235730565	ATATGTGT others(11): Show ATATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 NA20129.hp2 HG03209.hp2 NA20129.hp2	a0008 a0020 a0008 a0020	a0008c0034 a0020c0035 a0008c0034 a0020c0035	a0008c0034t0001 a0020c0035t0011 a0008c0034t0001 a0020c0035t0011	a0008c0034t0001g0097 a0020c0035t0011g0172 a0008c0034t0001g0097 a0020c0035t0011g0172	2	236	0.0085	-18	c.904 others(35): Show c.9044+264_9044+281delCACACACACACACACATA	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	36/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235730567	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00323.hp2 others(46): Show HG00140.hp1 HG00280.hp1 HG00323.hp2 HG00639.hp2 HG00738.hp2 HG00741.hp1 HG01070.hp2 HG01099.hp2 HG01106.hp2 HG01243.hp2 HG01257.hp2 HG01258.hp1 HG01358.hp2 HG01975.hp1 HG02055.hp2 HG02109.hp2 HG02145.hp2 HG02280.hp1 HG02280.hp2 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02683.hp1 HG02698.hp2 HG02717.hp2 HG02818.hp2 HG02896.hp2 HG02922.hp2 HG02965.hp1 HG03041.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp2 HG03225.hp2 HG03471.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03669.hp1 HG04204.hp1 HG06807.hp1 NA18941.hp1 NA18951.hp2 NA18968.hp1 NA18974.hp2 NA19030.hp2 NA19065.hp1 NA19088.hp1 NA20905.hp1	a0001 a0010 a0014 others(1): Show a0001 a0010 a0014 a0018	a0001c0002 a0001c0004 a0001c0016 others(6): Show a0001c0002 a0001c0004 a0001c0016 a0001c0029 a0001c0033 a0001c0038 a0010c0028 a0014c0032 a0018c0031	a0001c0002t0001 a0001c0002t0004 a0001c0002t0007 others(10): Show a0001c0002t0001 a0001c0002t0004 a0001c0002t0007 a0001c0002t0008 a0001c0002t0012 a0001c0004t0001 a0001c0016t0001 a0001c0029t0001 a0001c0033t0001 a0001c0038t0001 a0010c0028t0001 a0014c0032t0001 a0018c0031t0001	a0001c0002t0001g0007 a0001c0002t0001g0015 a0001c0002t0001g0016 others(46): Show a0001c0002t0001g0007 a0001c0002t0001g0015 a0001c0002t0001g0016 a0001c0002t0001g0018 a0001c0002t0001g0026 a0001c0002t0001g0027 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0032 a0001c0002t0001g0036 a0001c0002t0001g0045 a0001c0002t0001g0046 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0058 a0001c0002t0001g0059 a0001c0002t0001g0064 a0001c0002t0001g0065 a0001c0002t0001g0066 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0001g0077 a0001c0002t0001g0082 a0001c0002t0001g0091 a0001c0002t0004g0061 a0001c0002t0004g0062 a0001c0002t0004g0063 a0001c0002t0004g0071 a0001c0002t0007g0020 a0001c0002t0007g0021 a0001c0002t0008g0080 a0001c0002t0008g0081 a0001c0002t0012g0087 a0001c0004t0001g0017 a0001c0004t0001g0024 a0001c0004t0001g0031 a0001c0004t0001g0037 a0001c0004t0001g0057 a0001c0004t0001g0069 a0001c0004t0001g0070 a0001c0004t0001g0086 a0001c0004t0001g0117 a0001c0016t0001g0060 a0001c0029t0001g0073 a0001c0033t0001g0025 a0001c0038t0001g0106 a0010c0028t0001g0076 a0014c0032t0001g0030 a0018c0031t0001g0033	49	236	0.2076	-18	c.904 others(35): Show c.9044+262_9044+279delCACACACACACACACACA	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	36/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235730597	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01175.hp1 HG01192.hp2 others(11): Show HG01168.hp1 HG01175.hp1 HG01192.hp2 HG01255.hp1 HG01346.hp1 HG01496.hp2 HG01515.hp2 HG01517.hp2 HG02683.hp2 HG02735.hp2 HG03453.hp2 HG03471.hp1 NA19002.hp2 homoSapiens_chm13v2.hp1	a0001 a0004 a0001 a0004	a0001c0003 a0004c0011 a0001c0003 a0004c0011	a0001c0003t0001 a0001c0003t0010 a0001c0003t0014 others(1): Show a0001c0003t0001 a0001c0003t0010 a0001c0003t0014 a0004c0011t0001	a0001c0003t0001g0001 a0001c0003t0001g0038 a0001c0003t0001g0039 others(10): Show a0001c0003t0001g0001 a0001c0003t0001g0038 a0001c0003t0001g0039 a0001c0003t0001g0040 a0001c0003t0001g0048 a0001c0003t0001g0049 a0001c0003t0001g0051 a0001c0003t0001g0056 a0001c0003t0001g0090 a0001c0003t0001g0092 a0001c0003t0010g0068 a0001c0003t0014g0234 a0004c0011t0001g0009	14	236	0.0593	-18	c.904 others(35): Show c.9044+232_9044+249delTACACACACACACACACA	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	36/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235755998	AATCTATA others(11): Show AATCTATATCTATATCTAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01109.hp2 HG02145.hp2 others(11): Show HG01106.hp2 HG01109.hp2 HG02145.hp2 HG02280.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03195.hp2 HG03516.hp2 HG03540.hp2 HG03669.hp1 NA18522.hp1 NA19030.hp1 NA19030.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0009	a0001c0002 a0001c0004 a0001c0033 others(4): Show a0001c0002 a0001c0004 a0001c0033 a0002c0005 a0004c0041 a0004c0042 a0009c0040	a0001c0002t0001 a0001c0002t0007 a0001c0002t0008 others(6): Show a0001c0002t0001 a0001c0002t0007 a0001c0002t0008 a0001c0004t0001 a0001c0033t0001 a0002c0005t0001 a0004c0041t0002 a0004c0042t0002 a0009c0040t0009	a0001c0002t0001g0036 a0001c0002t0001g0074 a0001c0002t0001g0075 others(11): Show a0001c0002t0001g0036 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0007g0020 a0001c0002t0007g0021 a0001c0002t0008g0080 a0001c0002t0008g0081 a0001c0004t0001g0024 a0001c0033t0001g0025 a0002c0005t0001g0110 a0002c0005t0001g0124 a0004c0041t0002g0008 a0004c0042t0002g0011 a0009c0040t0009g0013	14	236	0.0593	-18	c.706 others(35): Show c.7060-369_7060-352delATAGATATAGATATAGAT	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	24/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235798578	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02280.hp1 HG03225.hp1 HG01099.hp1 HG02280.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0029 a0001c0001 a0001c0012 a0001c0029	a0001c0001t0001 a0001c0012t0001 a0001c0029t0001 a0001c0001t0001 a0001c0012t0001 a0001c0029t0001	a0001c0001t0001g0129 a0001c0012t0001g0101 a0001c0029t0001g0073 a0001c0001t0001g0129 a0001c0012t0001g0101 a0001c0029t0001g0073	3	236	0.0127	-18	c.400 others(37): Show c.4006+1724_4006+1741delTTTTTTTTTTTTTTTTTT	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	10/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235799928	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0005 a0005	a0005c0019 a0005c0019	a0005c0019t0001 a0005c0019t0001	a0005c0019t0001g0105 a0005c0019t0001g0105	1	236	0.0042	-18	c.400 others(35): Show c.4006+374_4006+391delAAAAAAAAAAAAAAAAAA	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	10/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235841079	CCAGTGAC others(11): Show CCAGTGACTAACTTCTTTA	C C	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0009 a0009	a0009c0040 a0009c0040	a0009c0040t0009 a0009c0040t0009	a0009c0040t0009g0013 a0009c0040t0009g0013	1	236	0.0042	-18	c.-97 others(35): Show c.-97-7430_-97-7413delTAAAGAAGTTAGTCACTG	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	1/52			chr1	TogoVar
LYST_chr1_235656041_235871906	235857742	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0013 a0001c0006t0013	a0001c0006t0013g0138 a0001c0006t0013g0138	1	236	0.0042	-18	c.-98 others(35): Show c.-98+9083_-98+9100delGTGTGTGTGTGTGTGTGT	LYST	ENSG00000143669.16	transcript	ENST00000389793.7	protein_coding	1/52			chr1	TogoVar
LYZL2_chr10_30606779_30634753	30617674	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01515.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0386 a0001c0001t0001g0386	1	456	0.0022	-18	c.299 others(35): Show c.299-4792_299-4775delTTTTTTTTTTTTTTTTTT	LYZL2	ENSG00000151033.10	transcript	ENST00000647634.2	protein_coding	3/4			chr10	TogoVar
LYZ_chr12_69343381_69359234	69350737	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG02109.hp2 HG02145.hp1 others(18): Show HG01069.hp2 HG02109.hp2 HG02145.hp1 HG02258.hp1 HG02280.hp2 HG02451.hp2 HG02486.hp2 HG02615.hp1 HG02647.hp2 HG02723.hp2 HG02809.hp1 HG02896.hp2 HG02922.hp1 HG02965.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03453.hp1 HG03471.hp2 HG06807.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0022 a0001c0001t0005 a0001c0001t0022	a0001c0001t0005g0005 a0001c0001t0005g0016 a0001c0001t0022g0005 a0001c0001t0005g0005 a0001c0001t0005g0016 a0001c0001t0022g0005	21	450	0.0467	-18	c.301 others(33): Show c.301+480_301+497delTTTTTTTTTTTTTTTTTT	LYZ	ENSG00000090382.7	transcript	ENST00000261267.7	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr12	TogoVar
LZTS1_chr8_20241165_20308963	20251098	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02109.hp1 HG02074.hp1 HG02109.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0019 a0002c0003t0005 a0001c0001t0019 a0002c0003t0005	a0001c0001t0019g0218 a0002c0003t0005g0341 a0001c0001t0019g0218 a0002c0003t0005g0341	2	406	0.0049	-18	c.115 others(35): Show c.1150-753_1150-736delATATATATATATATATAT	LZTS1	ENSG00000061337.16	transcript	ENST00000381569.5	protein_coding	3/3			chr8	TogoVar

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