Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNOT1_chr16_58514951_58634826	58603408	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp2 HG02895.hp2 HG02897.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0086 a0001c0002t0001g0087 a0001c0002t0001g0086 a0001c0002t0001g0087	2	308	0.0065	-18	c.-17 others(37): Show c.-174-3915_-174-3898delACACACACACACACACAC	CNOT1	ENSG00000125107.19	transcript	ENST00000317147.10	protein_coding	1/48			chr16	TogoVar
CNOT1_chr16_58514951_58634826	58631938	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02615.hp2 HG02622.hp1 others(4): Show HG02486.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02818.hp2 HG02965.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 others(4): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017	7	308	0.0227	-18	c.-24 others(29): Show c.-2403_-2386delAAAAAAAAAAAAAAAAAA	CNOT1	ENSG00000125107.19	transcript	ENST00000317147.10	protein_coding		2113		chr16	TogoVar
CNOT4_chr7_135356795_135515102	135424040	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00673.hp1 HG00735.hp2 others(73): Show HG00438.hp1 HG00673.hp1 HG00735.hp2 HG01071.hp1 HG01081.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01358.hp1 HG01515.hp1 HG01516.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp2 HG01975.hp1 HG01981.hp1 HG01993.hp2 HG02004.hp2 HG02129.hp1 HG02145.hp1 HG02165.hp2 HG02257.hp2 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02523.hp1 HG02559.hp1 HG03139.hp2 HG03688.hp1 HG03831.hp1 NA18612.hp1 NA18747.hp1 NA18941.hp2 NA18946.hp1 NA18947.hp2 NA18951.hp1 NA18956.hp1 NA18959.hp2 NA18963.hp2 NA18967.hp2 NA18968.hp2 NA18969.hp1 NA18975.hp1 NA18980.hp2 NA18983.hp1 NA18986.hp2 NA18989.hp1 NA18989.hp2 NA18997.hp2 NA18998.hp2 NA18999.hp1 NA19002.hp1 NA19003.hp1 NA19004.hp2 NA19005.hp2 NA19006.hp1 NA19007.hp1 NA19012.hp2 NA19054.hp1 NA19066.hp2 NA19068.hp1 NA19070.hp2 NA19072.hp2 NA19074.hp2 NA19078.hp1 NA19079.hp1 NA19080.hp2 NA19084.hp2 NA19087.hp1 NA19088.hp1 NA19090.hp1 NA19091.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0007	a0001c0001 a0002c0002 a0004c0005 others(1): Show a0001c0001 a0002c0002 a0004c0005 a0007c0009	a0001c0001t0001 a0002c0002t0001 a0004c0005t0001 others(1): Show a0001c0001t0001 a0002c0002t0001 a0004c0005t0001 a0007c0009t0001	a0001c0001t0001g0247 a0002c0002t0001g0019 a0002c0002t0001g0020 others(73): Show a0001c0001t0001g0247 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0023 a0002c0002t0001g0025 a0002c0002t0001g0026 a0002c0002t0001g0027 a0002c0002t0001g0028 a0002c0002t0001g0029 a0002c0002t0001g0032 a0002c0002t0001g0033 a0002c0002t0001g0035 a0002c0002t0001g0036 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0040 a0002c0002t0001g0041 a0002c0002t0001g0043 a0002c0002t0001g0045 a0002c0002t0001g0046 a0002c0002t0001g0050 a0002c0002t0001g0051 a0002c0002t0001g0052 a0002c0002t0001g0053 a0002c0002t0001g0054 a0002c0002t0001g0056 a0002c0002t0001g0060 a0002c0002t0001g0069 a0002c0002t0001g0072 a0002c0002t0001g0073 a0002c0002t0001g0075 a0002c0002t0001g0077 a0002c0002t0001g0078 a0002c0002t0001g0079 a0002c0002t0001g0080 a0002c0002t0001g0082 a0002c0002t0001g0083 a0002c0002t0001g0084 a0002c0002t0001g0085 a0002c0002t0001g0086 a0002c0002t0001g0087 a0002c0002t0001g0088 a0002c0002t0001g0089 a0002c0002t0001g0090 a0002c0002t0001g0091 a0002c0002t0001g0092 a0002c0002t0001g0093 a0002c0002t0001g0094 a0002c0002t0001g0095 a0002c0002t0001g0096 a0002c0002t0001g0097 a0002c0002t0001g0098 a0002c0002t0001g0099 a0002c0002t0001g0100 a0002c0002t0001g0101 a0002c0002t0001g0102 a0002c0002t0001g0103 a0002c0002t0001g0104 a0002c0002t0001g0105 a0002c0002t0001g0106 a0002c0002t0001g0107 a0002c0002t0001g0108 a0002c0002t0001g0109 a0002c0002t0001g0110 a0002c0002t0001g0111 a0002c0002t0001g0112 a0002c0002t0001g0129 a0002c0002t0001g0185 a0002c0002t0001g0186 a0002c0002t0001g0187 a0004c0005t0001g0126 a0004c0005t0001g0127 a0004c0005t0001g0128 a0007c0009t0001g0024	76	362	0.2099	-18	c.175 others(35): Show c.175-1705_175-1688delGTGTGTGTGTGTGTGTGT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	2/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135472476	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	362	0.0028	-18	c.-92 others(37): Show c.-92-34071_-92-34054delTTTTTTTTTTTTTTTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135472504	AAAAAAAA others(11): Show AAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0002 a0002c0002t0006g0002	1	362	0.0028	-18	c.-92 others(37): Show c.-92-34099_-92-34082delATATATATTTTTTTTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135472510	AAAAAATA others(11): Show AAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0361 a0001c0001t0003g0361	1	362	0.0028	-18	c.-92 others(37): Show c.-92-34105_-92-34088delATATATATATATATTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135495684	AAAAAAAA others(11): Show AAAAAAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02083.hp2 HG03490.hp2 others(9): Show HG00597.hp2 HG02083.hp2 HG03490.hp2 NA18939.hp1 NA18941.hp1 NA18990.hp1 NA18997.hp2 NA19070.hp2 NA19075.hp1 NA19080.hp1 NA19085.hp2 NA19086.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0002c0002t0001	a0001c0001t0001g0141 a0001c0001t0003g0351 a0001c0001t0003g0354 others(9): Show a0001c0001t0001g0141 a0001c0001t0003g0351 a0001c0001t0003g0354 a0001c0001t0003g0355 a0001c0001t0003g0356 a0001c0001t0003g0357 a0001c0001t0003g0358 a0001c0001t0003g0359 a0001c0001t0003g0361 a0001c0001t0004g0346 a0002c0002t0001g0037 a0002c0002t0001g0038	12	362	0.0332	-18	c.-93 others(37): Show c.-93+14187_-93+14204delCTTTCTTTCTTTTTTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT4_chr7_135356795_135515102	135495688	AAAAAAGA others(11): Show AAAAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02622.hp2 HG02897.hp2 others(5): Show HG02145.hp2 HG02622.hp2 HG02897.hp2 NA18989.hp1 NA18992.hp1 NA19086.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0002c0002t0001	a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0298 others(5): Show a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0298 a0001c0001t0002g0292 a0001c0001t0002g0293 a0001c0001t0002g0294 a0001c0001t0005g0001 a0002c0002t0001g0112	8	362	0.0221	-18	c.-93 others(37): Show c.-93+14183_-93+14200delCTTTCTTTCTTTCTTTTT	CNOT4	ENSG00000080802.21	transcript	ENST00000541284.6	protein_coding	1/11			chr7	TogoVar
CNOT6L_chr4_77708387_77824368	77714438	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02602.hp2 HG02965.hp2 HG02602.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0041 a0001c0001t0033 a0001c0001t0041	a0001c0001t0033g0046 a0001c0001t0041g0171 a0001c0001t0033g0046 a0001c0001t0041g0171	2	328	0.0061	-18	c.59 others(29): Show c.5975_*5992delTTTTTTTTTTTTTTTTTT	CNOT6L	ENSG00000138767.14	transcript	ENST00000504123.7	protein_coding	12/12	5975		chr4	TogoVar
CNOT6_chr5_180489379_180583358	180510134	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0059 a0001c0001t0057g0059	1	334	0.0030	-18	c.-3+ others(35): Show c.-3+15389_-3+15406delTTTTTTTTTTTTTTTTTT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180533312	CTATATAT others(11): Show CTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00738.hp1 HG01358.hp1 others(4): Show HG00099.hp1 HG00738.hp1 HG01358.hp1 HG02451.hp2 HG02809.hp2 HG03540.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0040 a0001c0001t0041 others(1): Show a0001c0001t0018 a0001c0001t0040 a0001c0001t0041 a0001c0001t0060	a0001c0001t0018g0004 a0001c0001t0018g0005 a0001c0001t0018g0006 others(4): Show a0001c0001t0018g0004 a0001c0001t0018g0005 a0001c0001t0018g0006 a0001c0001t0018g0007 a0001c0001t0040g0100 a0001c0001t0041g0101 a0001c0001t0060g0002	7	334	0.0210	-18	c.112 others(35): Show c.112+3938_112+3955delATATATATATATATATAT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180535988	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0002 a0001c0001t0060g0002	1	334	0.0030	-18	c.112 others(35): Show c.112+6612_112+6629delTTTTTTTTTTTTTTTTTT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180538686	GTATATAT others(11): Show GTATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01884.hp1 HG02055.hp2 others(11): Show HG01261.hp1 HG01884.hp1 HG02055.hp2 HG02109.hp1 HG02818.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp1 HG03130.hp2 HG03195.hp1 HG03225.hp1 HG03453.hp1 HG03486.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0011 a0001c0001t0022 a0001c0001t0025 others(3): Show a0001c0001t0011 a0001c0001t0022 a0001c0001t0025 a0001c0001t0026 a0001c0001t0038 a0001c0003t0022	a0001c0001t0011g0212 a0001c0001t0011g0213 a0001c0001t0011g0214 others(11): Show a0001c0001t0011g0212 a0001c0001t0011g0213 a0001c0001t0011g0214 a0001c0001t0011g0215 a0001c0001t0011g0216 a0001c0001t0011g0224 a0001c0001t0022g0225 a0001c0001t0025g0217 a0001c0001t0025g0219 a0001c0001t0026g0221 a0001c0001t0026g0223 a0001c0001t0038g0218 a0001c0003t0022g0220 a0001c0003t0022g0222	14	334	0.0419	-18	c.112 others(35): Show c.112+9311_112+9328delTATATATATATATATATA	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180573586	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGTCC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG03195.hp2 HG00735.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0014 a0001c0001t0008 a0001c0001t0014	a0001c0001t0008g0297 a0001c0001t0014g0202 a0001c0001t0008g0297 a0001c0001t0014g0202	2	334	0.0060	-18	c.146 others(35): Show c.1462-399_1462-382delGTGTGTGTGTGTGTCCGT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	11/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT9_chr2_218563839_218602080	218583223	GTGTGTGT others(11): Show GTGTGTGTGTGTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA19012.hp1 NA19081.hp2 others(1): Show NA18968.hp1 NA19012.hp1 NA19081.hp2 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0010 a0001c0001t0004 a0001c0001t0010	a0001c0001t0004g0208 a0001c0001t0010g0194 a0001c0001t0010g0207 others(1): Show a0001c0001t0004g0208 a0001c0001t0010g0194 a0001c0001t0010g0207 a0001c0001t0010g0209	4	322	0.0124	-18	c.320 others(33): Show c.320+139_320+156delGTGTGTGTGTCTCTCTCT	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT9_chr2_218563839_218602080	218583225	GTGTGTGT others(11): Show GTGTGTGTGTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02970.hp2 HG03225.hp1 HG02280.hp2 HG02970.hp2 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009	a0001c0001t0003g0184 a0001c0001t0005g0186 a0001c0001t0009g0185 a0001c0001t0003g0184 a0001c0001t0005g0186 a0001c0001t0009g0185	3	322	0.0093	-18	c.320 others(33): Show c.320+141_320+158delGTGTGTGTCTCTCTCTCT	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT9_chr2_218563839_218602080	218583227	GTGTGTGT others(11): Show GTGTGTGTCTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0181 a0001c0001t0041g0181	1	322	0.0031	-18	c.320 others(33): Show c.320+143_320+160delGTGTGTCTCTCTCTCTCT	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT9_chr2_218563839_218602080	218583229	GTGTGTCT others(11): Show GTGTGTCTCTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG01109.hp1 NA19074.hp1 HG01109.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0042 a0001c0001t0001 a0001c0001t0042	a0001c0001t0001g0127 a0001c0001t0042g0190 a0001c0001t0001g0127 a0001c0001t0042g0190	2	322	0.0062	-18	c.320 others(33): Show c.320+145_320+162delGTGTCTCTCTCTCTCTCT	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT9_chr2_218563839_218602080	218583231	GTGTCTCT others(11): Show GTGTCTCTCTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG03453.hp2 NA19055.hp2 HG03453.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0022 a0001c0001t0001 a0001c0001t0022	a0001c0001t0001g0134 a0001c0001t0022g0189 a0001c0001t0001g0134 a0001c0001t0022g0189	2	322	0.0062	-18	c.320 others(33): Show c.320+147_320+164delGTCTCTCTCTCTCTCTCT	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNOT9_chr2_218563839_218602080	218583233	GTCTCTCT others(11): Show GTCTCTCTCTCTCTCTCTC	G G	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0150 a0001c0001t0018g0150	1	322	0.0031	-18	c.320 others(33): Show c.320+184_320+201delTCTCTCTCTCTCTCTCTC	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNRIP1_chr2_68288010_68324949	68297567	CAAAAAAA others(11): Show CAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18948.hp2 NA18978.hp2 NA18988.hp2 others(1): Show NA18948.hp2 NA18978.hp2 NA18988.hp2 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0060 a0001c0001t0001g0078 a0001c0001t0001g0089 others(1): Show a0001c0001t0001g0060 a0001c0001t0001g0078 a0001c0001t0001g0089 a0001c0001t0001g0090	4	424	0.0094	-18	c.331 others(35): Show c.331-3559_331-3542delTTTTTTTTTTTTTTTTTT	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNRIP1_chr2_68288010_68324949	68305272	ATATGTGT others(11): Show ATATGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	424	0.0024	-18	c.331 others(37): Show c.331-11264_331-11247delCACACACACACACACATA	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246585666	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03209.hp2 NA19030.hp1 others(1): Show HG02717.hp1 HG03209.hp2 NA19030.hp1 NA21309.hp2	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0005 a0001c0001 a0003c0003 a0006c0005	a0001c0001t0001 a0003c0003t0004 a0006c0005t0023 a0001c0001t0001 a0003c0003t0004 a0006c0005t0023	a0001c0001t0001g0156 a0001c0001t0001g0166 a0003c0003t0004g0162 others(1): Show a0001c0001t0001g0156 a0001c0001t0001g0166 a0003c0003t0004g0162 a0006c0005t0023g0043	4	320	0.0125	-18	c.-51 others(35): Show c.-51-5817_-51-5800delACACACACACACACACAC	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTF_chr11_58617665_58630733	58628131	TGTGTGTG others(11): Show TGTGTGTGTGTGTGTGCGC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	410	0.0024	-18	c.36 others(29): Show c.3610_*3627delGTGTGTGTGTGTGTGCGC	CNTF	ENSG00000242689.3	transcript	ENST00000361987.6	protein_coding		2399		chr11	TogoVar
CNTLN_chr9_17130040_17508923	17237354	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02735.hp2 HG02615.hp1 HG02735.hp2	a0001 a0009 a0001 a0009	a0001c0004 a0009c0010 a0001c0004 a0009c0010	a0001c0004t0001 a0009c0010t0002 a0001c0004t0001 a0009c0010t0002	a0001c0004t0001g0015 a0009c0010t0002g0001 a0001c0004t0001g0015 a0009c0010t0002g0001	2	218	0.0092	-18	c.849 others(33): Show c.849+801_849+818delACACACACACACACACAC	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	5/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17294819	GGGGGGAG others(11): Show GGGGGGAGGGCGGGGAGGA	G G	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG04204.hp2 HG02572.hp2 HG04204.hp2	a0002 a0002	a0002c0008 a0002c0017 a0002c0008 a0002c0017	a0002c0008t0001 a0002c0017t0001 a0002c0008t0001 a0002c0017t0001	a0002c0008t0001g0027 a0002c0017t0001g0196 a0002c0008t0001g0027 a0002c0017t0001g0196	2	218	0.0092	-18	c.984 others(35): Show c.984-3365_984-3348delAGGGCGGGGAGGAGGGGG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17295987	AGAGAGAG others(11): Show AGAGAGAGAGAGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0022 a0022	a0022c0024 a0022c0024	a0022c0024t0003 a0022c0024t0003	a0022c0024t0003g0024 a0022c0024t0003g0024	1	218	0.0046	-18	c.984 others(35): Show c.984-2201_984-2184delAGAGAGAGAGTGTGTGTG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17475088	CAGGCCCT others(11): Show CAGGCCCTCTTCTCTCTCA	C C	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0051 a0003c0002t0001g0051	1	218	0.0046	-18	c.385 others(37): Show c.3855+8201_3855+8218delCCCTCTTCTCTCTCAAGG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	23/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTN1_chr12_40687439_41077415	40707046	GCACACAC others(11): Show GCACACACACACACACACA	G G	intron_variant intron_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0166 a0001c0001t0003g0166	1	230	0.0044	-18	c.-77 others(37): Show c.-77+14480_-77+14497delACACACACACACACACAC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40707227	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00323.hp2 others(42): Show HG00099.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00741.hp2 HG01070.hp1 HG01074.hp1 HG01169.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01517.hp2 HG02015.hp1 HG02071.hp2 HG02145.hp2 HG02280.hp2 HG02300.hp2 HG02559.hp2 HG02886.hp2 HG02897.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03225.hp1 HG03516.hp2 HG03654.hp2 HG03704.hp2 HG03927.hp1 HG04115.hp1 NA18943.hp2 NA18957.hp2 NA18959.hp1 NA18973.hp1 NA18974.hp2 NA18983.hp1 NA18984.hp1 NA18989.hp2 NA19007.hp1 NA19012.hp2 NA19043.hp1 NA19062.hp1 NA19240.hp2 NA20129.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0009 a0005c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(13): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0018 a0001c0002t0001 a0001c0002t0027 a0001c0003t0003 a0001c0005t0002 a0001c0006t0006 a0001c0009t0004 a0005c0010t0002	a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 others(42): Show a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0002g0016 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0067 a0001c0001t0003g0023 a0001c0001t0004g0029 a0001c0001t0005g0020 a0001c0001t0012g0012 a0001c0001t0013g0211 a0001c0001t0014g0074 a0001c0001t0018g0048 a0001c0002t0001g0013 a0001c0002t0001g0014 a0001c0002t0001g0022 a0001c0002t0001g0024 a0001c0002t0001g0025 a0001c0002t0001g0028 a0001c0002t0001g0031 a0001c0002t0001g0032 a0001c0002t0001g0033 a0001c0002t0001g0034 a0001c0002t0001g0035 a0001c0002t0001g0036 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0044 a0001c0002t0001g0047 a0001c0002t0001g0068 a0001c0002t0027g0041 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0005t0002g0062 a0001c0006t0006g0015 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0009t0004g0046 a0005c0010t0002g0026	45	230	0.1957	-18	c.-77 others(37): Show c.-77+14657_-77+14674delTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40795274	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02717.hp2 HG03225.hp2 others(4): Show HG01106.hp2 HG02717.hp2 HG03225.hp2 HG03486.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(2): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0003t0011 a0001c0005t0002	a0001c0001t0001g0095 a0001c0001t0001g0230 a0001c0002t0001g0197 others(4): Show a0001c0001t0001g0095 a0001c0001t0001g0230 a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0002t0003g0060 a0001c0003t0011g0199 a0001c0005t0002g0207	7	230	0.0304	-18	c.-77 others(39): Show c.-77+102710_-77+102727delCACACACACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40830791	GTATATAT others(11): Show GTATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 NA18522.hp1 HG02145.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0002 a0001c0001t0007	a0001c0001t0002g0059 a0001c0001t0007g0058 a0001c0001t0002g0059 a0001c0001t0007g0058	2	230	0.0087	-18	c.-76 others(37): Show c.-76-77539_-76-77522delTATATATATATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40871186	GAAAAAAA others(11): Show GAAAAAAAAAAAAAAAAAA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00408.hp1 others(104): Show HG00099.hp1 HG00280.hp2 HG00408.hp1 HG00738.hp2 HG01069.hp2 HG01070.hp1 HG01106.hp1 HG01109.hp2 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01255.hp1 HG01255.hp2 HG01256.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp1 HG01884.hp1 HG01884.hp2 HG01981.hp1 HG02004.hp1 HG02027.hp1 HG02055.hp1 HG02055.hp2 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02257.hp1 HG02273.hp1 HG02486.hp1 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02717.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03239.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03927.hp1 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18906.hp1 NA18943.hp1 NA18944.hp2 NA18950.hp1 NA18953.hp1 NA18953.hp2 NA18957.hp1 NA18957.hp2 NA18959.hp1 NA18964.hp2 NA18970.hp1 NA18972.hp2 NA18974.hp2 NA18984.hp2 NA18988.hp1 NA19006.hp2 NA19007.hp2 NA19010.hp1 NA19012.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19062.hp1 NA19079.hp1 NA19083.hp2 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0006 a0001c0012 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(23): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0018 a0001c0001t0026 a0001c0002t0001 a0001c0002t0003 a0001c0003t0002 a0001c0003t0003 a0001c0003t0016 a0001c0003t0019 a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0007 a0001c0006t0006 a0001c0012t0021 a0002c0007t0008	a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 others(104): Show a0001c0001t0001g0007 a0001c0001t0001g0038 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0049 a0001c0001t0001g0063 a0001c0001t0001g0095 a0001c0001t0001g0101 a0001c0001t0001g0114 a0001c0001t0001g0118 a0001c0001t0001g0152 a0001c0001t0001g0188 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0218 a0001c0001t0001g0223 a0001c0001t0001g0230 a0001c0001t0002g0005 a0001c0001t0002g0011 a0001c0001t0002g0019 a0001c0001t0002g0027 a0001c0001t0002g0030 a0001c0001t0002g0045 a0001c0001t0002g0059 a0001c0001t0002g0069 a0001c0001t0002g0091 a0001c0001t0002g0094 a0001c0001t0002g0096 a0001c0001t0002g0113 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0141 a0001c0001t0002g0153 a0001c0001t0002g0159 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0180 a0001c0001t0002g0209 a0001c0001t0003g0010 a0001c0001t0003g0023 a0001c0001t0003g0084 a0001c0001t0003g0120 a0001c0001t0003g0150 a0001c0001t0003g0151 a0001c0001t0003g0154 a0001c0001t0003g0166 a0001c0001t0003g0200 a0001c0001t0003g0222 a0001c0001t0003g0224 a0001c0001t0004g0054 a0001c0001t0004g0073 a0001c0001t0004g0170 a0001c0001t0004g0184 a0001c0001t0004g0225 a0001c0001t0007g0002 a0001c0001t0007g0006 a0001c0001t0007g0055 a0001c0001t0007g0058 a0001c0001t0009g0181 a0001c0001t0009g0182 a0001c0001t0009g0183 a0001c0001t0012g0012 a0001c0001t0012g0125 a0001c0001t0013g0133 a0001c0001t0013g0211 a0001c0001t0014g0074 a0001c0001t0014g0185 a0001c0001t0015g0219 a0001c0001t0017g0187 a0001c0001t0018g0048 a0001c0001t0026g0190 a0001c0002t0001g0001 a0001c0002t0001g0025 a0001c0002t0001g0034 a0001c0002t0001g0090 a0001c0002t0001g0169 a0001c0002t0001g0203 a0001c0002t0003g0060 a0001c0003t0002g0108 a0001c0003t0002g0128 a0001c0003t0003g0061 a0001c0003t0003g0064 a0001c0003t0003g0065 a0001c0003t0003g0066 a0001c0003t0016g0226 a0001c0003t0019g0056 a0001c0004t0001g0217 a0001c0004t0002g0008 a0001c0004t0003g0168 a0001c0004t0003g0171 a0001c0004t0007g0003 a0001c0004t0007g0004 a0001c0004t0007g0057 a0001c0004t0007g0213 a0001c0004t0007g0214 a0001c0006t0006g0015 a0001c0006t0006g0017 a0001c0006t0006g0018 a0001c0006t0006g0021 a0001c0006t0006g0051 a0001c0006t0006g0119 a0001c0012t0021g0204 a0002c0007t0008g0009 a0002c0007t0008g0122 a0002c0007t0008g0123 a0002c0007t0008g0186 a0002c0007t0008g0192	107	230	0.4652	-18	c.-76 others(37): Show c.-76-37160_-76-37143delAAAAAAAAAAAAAAAAAA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40872208	TTGTTTGT others(11): Show TTGTTTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0223 a0001c0001t0001g0223	1	230	0.0044	-18	c.-76 others(37): Show c.-76-36145_-76-36128delTTGTGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40947774	TATATATA others(11): Show TATATATATACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03041.hp2 NA20129.hp2 HG03041.hp2 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0064 a0001c0003t0003g0066 a0001c0003t0003g0064 a0001c0003t0003g0066	2	230	0.0087	-18	c.168 others(37): Show c.1683+3606_1683+3623delTATATATACACACACACA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	14/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	TTATATAT others(11): Show TTATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01167.hp1 HG01167.hp2 others(7): Show HG01070.hp2 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG02109.hp1 HG02280.hp2 HG02622.hp1 HG02717.hp2 HG04115.hp2 NA19011.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0011 a0001c0001 a0001c0002 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 a0001c0002t0001 a0004c0011t0001	a0001c0001t0001g0063 a0001c0001t0001g0079 a0001c0001t0001g0177 others(7): Show a0001c0001t0001g0063 a0001c0001t0001g0079 a0001c0001t0001g0177 a0001c0001t0001g0212 a0001c0001t0001g0230 a0001c0001t0002g0067 a0001c0001t0013g0133 a0001c0002t0001g0195 a0001c0002t0001g0196 a0004c0011t0001g0097	10	230	0.0435	-18	c.180 others(37): Show c.1805-5703_1805-5686delATATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41007045	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0087 a0001c0001t0002g0087	1	230	0.0044	-18	c.211 others(37): Show c.2114-7168_2114-7151delTTTTTTTTTTTTTTTTTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	41056912	ATTTATAA others(11): Show ATTTATAATATTTAGATAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0199 a0001c0003t0011g0199	1	230	0.0044	-18	c.298 others(39): Show c.2981-13044_2981-13027delTATAATATTTAGATATTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	23/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN2_chr1_205038212_205083289	205049280	CGACACAC others(11): Show CGACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01109.hp2 HG02080.hp2 others(10): Show HG00558.hp1 HG01109.hp2 HG02080.hp2 HG02155.hp1 HG02735.hp1 HG03139.hp1 NA18943.hp1 NA18962.hp2 NA18980.hp1 NA19003.hp2 NA19007.hp1 NA19012.hp2 NA19063.hp2	a0001 a0010 a0001 a0010	a0001c0001 a0001c0004 a0010c0022 a0001c0001 a0001c0004 a0010c0022	a0001c0001t0011 a0001c0001t0034 a0001c0004t0001 others(4): Show a0001c0001t0011 a0001c0001t0034 a0001c0004t0001 a0001c0004t0008 a0001c0004t0019 a0001c0004t0035 a0010c0022t0008	a0001c0001t0011g0276 a0001c0001t0034g0318 a0001c0004t0001g0231 others(8): Show a0001c0001t0011g0276 a0001c0001t0034g0318 a0001c0004t0001g0231 a0001c0004t0008g0007 a0001c0004t0008g0138 a0001c0004t0008g0229 a0001c0004t0008g0234 a0001c0004t0019g0137 a0001c0004t0019g0232 a0001c0004t0035g0230 a0010c0022t0008g0233	13	380	0.0342	-18	c.-86 others(35): Show c.-86-3819_-86-3802delGACACACACACACACACA	CNTN2	ENSG00000184144.12	transcript	ENST00000331830.7	protein_coding	1/22			chr1	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATATA others(11): Show GATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02647.hp2 HG03579.hp1 others(1): Show HG02258.hp1 HG02647.hp2 HG03579.hp1 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0009 a0003c0003 a0003c0007 a0001c0009 a0003c0003 a0003c0007	a0001c0009t0002 a0001c0009t0004 a0003c0003t0002 others(1): Show a0001c0009t0002 a0001c0009t0004 a0003c0003t0002 a0003c0007t0002	a0001c0009t0002g0031 a0001c0009t0004g0103 a0003c0003t0002g0079 others(1): Show a0001c0009t0002g0031 a0001c0009t0004g0103 a0003c0003t0002g0079 a0003c0007t0002g0041	4	174	0.0230	-18	c.251 others(35): Show c.2518-317_2518-300delATATATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74344397	GTTTTTTT others(11): Show GTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02965.hp1 NA19043.hp2 HG02896.hp2 HG02965.hp1 NA19043.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0003 a0001c0001 a0001c0002 a0003c0003	a0001c0001t0004 a0001c0002t0002 a0003c0003t0002 a0001c0001t0004 a0001c0002t0002 a0003c0003t0002	a0001c0001t0004g0090 a0001c0002t0002g0021 a0003c0003t0002g0033 a0001c0001t0004g0090 a0001c0002t0002g0021 a0003c0003t0002g0033	3	174	0.0172	-18	c.136 others(37): Show c.1365-7757_1365-7740delAAAAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74435534	ACTTGTTT others(11): Show ACTTGTTTGGCTTTTACAC	A A	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02622.hp1 HG03579.hp1 HG02258.hp1 HG02622.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0019 a0001c0009t0002 a0001c0009t0004 a0001c0002t0019 a0001c0009t0002 a0001c0009t0004	a0001c0002t0019g0002 a0001c0009t0002g0031 a0001c0009t0004g0103 a0001c0002t0019g0002 a0001c0009t0002g0031 a0001c0009t0004g0103	3	174	0.0172	-18	c.359 others(37): Show c.359-10612_359-10595delGTGTAAAAGCCAAACAAG	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2120391	ATATATAT others(11): Show ATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0096 a0001c0005t0001g0096	1	116	0.0086	-18	c.-14 others(39): Show c.-145+19754_-145+19771delATATATATATATATTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2287675	AGAAGAAG others(11): Show AGAAGAAGAAGAAGAAGAG	A A	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03209.hp2 HG03654.hp2 HG02965.hp1 HG03209.hp2 HG03654.hp2	a0001 a0006 a0001 a0006	a0001c0002 a0001c0005 a0006c0028 a0001c0002 a0001c0005 a0006c0028	a0001c0002t0007 a0001c0005t0006 a0006c0028t0001 a0001c0002t0007 a0001c0005t0006 a0006c0028t0001	a0001c0002t0007g0080 a0001c0005t0006g0032 a0006c0028t0001g0023 a0001c0002t0007g0080 a0001c0005t0006g0032 a0006c0028t0001g0023	3	116	0.0259	-18	c.-14 others(39): Show c.-144-51467_-144-51450delGGAAGAAGAAGAAGAAGA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2300560	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01169.hp1 HG02258.hp1 others(2): Show HG00642.hp2 HG01169.hp1 HG02258.hp1 HG02809.hp2 HG06807.hp1	a0001 a0003 a0001 a0003	a0001c0003 a0001c0005 a0001c0006 others(2): Show a0001c0003 a0001c0005 a0001c0006 a0001c0021 a0003c0019	a0001c0003t0002 a0001c0005t0006 a0001c0006t0002 others(2): Show a0001c0003t0002 a0001c0005t0006 a0001c0006t0002 a0001c0021t0002 a0003c0019t0002	a0001c0003t0002g0107 a0001c0005t0006g0010 a0001c0006t0002g0026 others(2): Show a0001c0003t0002g0107 a0001c0005t0006g0010 a0001c0006t0002g0026 a0001c0021t0002g0025 a0003c0019t0002g0031	5	116	0.0431	-18	c.-14 others(39): Show c.-144-38605_-144-38588delTTTTTTTTTTTTTTTTTT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	2/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2522146	AGTTTGTG others(11): Show AGTTTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0008 a0008	a0008c0026 a0008c0026	a0008c0026t0017 a0008c0026t0017	a0008c0026t0017g0047 a0008c0026t0017g0047	1	116	0.0086	-18	c.-88 others(37): Show c.-88-49267_-88-49250delTTGTGTGTGTGTGTGTGT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2612107	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00735.hp1 HG00738.hp1 others(23): Show HG00639.hp1 HG00735.hp1 HG00738.hp1 HG01169.hp2 HG01261.hp2 HG01361.hp1 HG01884.hp2 HG02258.hp2 HG02572.hp2 HG02602.hp1 HG02683.hp2 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02965.hp2 HG03041.hp2 HG03139.hp1 HG03453.hp1 HG03486.hp1 HG03516.hp1 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18990.hp1 NA19043.hp2 NA20300.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0021 a0001c0023 a0002c0017 a0003c0008 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(18): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0002t0001 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0002t0012 a0001c0003t0001 a0001c0003t0003 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0010 a0001c0007t0003 a0001c0021t0002 a0001c0023t0004 a0002c0017t0008 a0003c0008t0013 a0004c0011t0003	a0001c0001t0001g0049 a0001c0001t0002g0086 a0001c0001t0003g0058 others(23): Show a0001c0001t0001g0049 a0001c0001t0002g0086 a0001c0001t0003g0058 a0001c0001t0009g0052 a0001c0002t0001g0027 a0001c0002t0003g0114 a0001c0002t0005g0003 a0001c0002t0007g0009 a0001c0002t0007g0112 a0001c0002t0012g0013 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0003g0046 a0001c0004t0001g0036 a0001c0004t0002g0048 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0010g0001 a0001c0007t0003g0034 a0001c0021t0002g0025 a0001c0023t0004g0041 a0002c0017t0008g0067 a0003c0008t0013g0109 a0004c0011t0003g0065 a0004c0011t0003g0111	26	116	0.2241	-18	c.55+ others(35): Show c.55+40565_55+40582delCACACACACACACACACA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99073893	TAATGGGA others(11): Show TAATGGGATTGCTGGGTCA	T T	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0003	a0005c0005t0003g0045 a0005c0005t0003g0045	1	66	0.0152	-18	c.-21 others(39): Show c.-210+52629_-210+52646delGATTGCTGGGTCAAATGG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99178314	CCACACAC others(11): Show CCACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01169.hp1 HG02257.hp1 others(4): Show HG01123.hp1 HG01169.hp1 HG02257.hp1 HG02976.hp2 NA18522.hp1 NA18522.hp2 NA19070.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0003c0011 a0005c0005	a0001c0001t0003 a0001c0001t0009 a0001c0001t0014 others(4): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0014 a0002c0002t0004 a0003c0003t0007 a0003c0011t0019 a0005c0005t0001	a0001c0001t0003g0060 a0001c0001t0009g0043 a0001c0001t0014g0016 others(4): Show a0001c0001t0003g0060 a0001c0001t0009g0043 a0001c0001t0014g0016 a0002c0002t0004g0007 a0003c0003t0007g0057 a0003c0011t0019g0059 a0005c0005t0001g0017	7	66	0.1061	-18	c.-20 others(41): Show c.-209-146995_-209-146978delCACACACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99284600	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02895.hp2 HG02886.hp1 HG02895.hp2	a0003 a0004 a0003 a0004	a0003c0003 a0004c0004 a0003c0003 a0004c0004	a0003c0003t0002 a0004c0004t0013 a0003c0003t0002 a0004c0004t0013	a0003c0003t0002g0027 a0004c0004t0013g0050 a0003c0003t0002g0027 a0004c0004t0013g0050	2	66	0.0303	-18	c.-20 others(39): Show c.-209-40702_-209-40685delTGTGTGTGTGTGTGTGTG	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	1/24		INFO_REALIGN_3_PRIME	chr11	TogoVar

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