Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
COL26A1_chr7_101357875_101564024	101473608	CCACACAC others(11): Show CCACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp1 HG01074.hp2 others(19): Show HG00140.hp1 HG00323.hp1 HG01074.hp2 HG01081.hp2 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01243.hp1 HG01257.hp2 HG01261.hp2 HG01346.hp1 HG01884.hp2 HG03516.hp2 HG03704.hp1 HG06807.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(8): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0001c0009 a0001c0013 a0002c0004 a0002c0006 a0002c0007 a0003c0010 a0003c0018	a0001c0001t0005 a0001c0002t0006 a0001c0005t0005 others(8): Show a0001c0001t0005 a0001c0002t0006 a0001c0005t0005 a0001c0008t0007 a0001c0009t0013 a0001c0013t0010 a0002c0004t0001 a0002c0006t0004 a0002c0007t0004 a0003c0010t0022 a0003c0018t0019	a0001c0001t0005g0059 a0001c0001t0005g0079 a0001c0001t0005g0134 others(19): Show a0001c0001t0005g0059 a0001c0001t0005g0079 a0001c0001t0005g0134 a0001c0001t0005g0135 a0001c0001t0005g0139 a0001c0002t0006g0010 a0001c0005t0005g0144 a0001c0008t0007g0069 a0001c0008t0007g0075 a0001c0008t0007g0076 a0001c0008t0007g0077 a0001c0008t0007g0078 a0001c0008t0007g0121 a0001c0009t0013g0014 a0001c0013t0010g0028 a0001c0013t0010g0039 a0002c0004t0001g0070 a0002c0006t0004g0013 a0002c0006t0004g0016 a0002c0007t0004g0037 a0003c0010t0022g0166 a0003c0018t0019g0005	22	174	0.1264	-18	c.385 others(37): Show c.385+25850_385+25867delCACACACACACACACACA	COL26A1	ENSG00000160963.14	transcript	ENST00000313669.12	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
COL26A1_chr7_101357875_101564024	101476142	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp2 HG00323.hp1 others(44): Show HG00140.hp1 HG00280.hp2 HG00323.hp1 HG01074.hp2 HG01081.hp2 HG01109.hp2 HG01167.hp1 HG01168.hp2 HG01243.hp1 HG01257.hp2 HG01261.hp2 HG01346.hp1 HG01884.hp1 HG01884.hp2 HG02258.hp1 HG02258.hp2 HG02486.hp1 HG02602.hp2 HG02615.hp2 HG02647.hp1 HG02818.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG02965.hp2 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03516.hp1 HG03516.hp2 HG03669.hp2 HG03704.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA19043.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20752.hp2 NA20905.hp1 NA20905.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(10): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0001c0009 a0001c0013 a0001c0014 a0002c0003 a0002c0004 a0002c0006 a0002c0007 a0003c0010 a0003c0018	a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 others(17): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 a0001c0002t0006 a0001c0002t0020 a0001c0005t0005 a0001c0005t0008 a0001c0008t0007 a0001c0009t0003 a0001c0009t0006 a0001c0009t0013 a0001c0013t0010 a0001c0014t0009 a0002c0003t0001 a0002c0004t0001 a0002c0006t0004 a0002c0007t0004 a0003c0010t0022 a0003c0010t0027 a0003c0018t0019	a0001c0001t0002g0064 a0001c0001t0002g0084 a0001c0001t0002g0132 others(44): Show a0001c0001t0002g0064 a0001c0001t0002g0084 a0001c0001t0002g0132 a0001c0001t0002g0174 a0001c0001t0005g0059 a0001c0001t0005g0079 a0001c0001t0005g0134 a0001c0001t0005g0135 a0001c0001t0005g0139 a0001c0001t0011g0108 a0001c0001t0011g0120 a0001c0002t0006g0010 a0001c0002t0020g0001 a0001c0005t0005g0106 a0001c0005t0005g0144 a0001c0005t0005g0167 a0001c0005t0008g0128 a0001c0008t0007g0069 a0001c0008t0007g0075 a0001c0008t0007g0076 a0001c0008t0007g0077 a0001c0008t0007g0078 a0001c0008t0007g0121 a0001c0009t0003g0026 a0001c0009t0006g0019 a0001c0009t0013g0014 a0001c0013t0010g0028 a0001c0013t0010g0039 a0001c0014t0009g0099 a0002c0003t0001g0088 a0002c0003t0001g0100 a0002c0003t0001g0112 a0002c0003t0001g0130 a0002c0003t0001g0143 a0002c0003t0001g0158 a0002c0004t0001g0070 a0002c0004t0001g0138 a0002c0004t0001g0145 a0002c0004t0001g0171 a0002c0006t0004g0013 a0002c0006t0004g0016 a0002c0007t0004g0007 a0002c0007t0004g0009 a0002c0007t0004g0037 a0003c0010t0022g0166 a0003c0010t0027g0172 a0003c0018t0019g0005	47	174	0.2701	-18	c.385 others(37): Show c.385+28374_385+28391delTGTGTGTGTGTGTGTGTG	COL26A1	ENSG00000160963.14	transcript	ENST00000313669.12	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
COL26A1_chr7_101357875_101564024	101483990	AGTGTGTG others(11): Show AGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG03516.hp2 NA20300.hp1 HG03516.hp2 NA20300.hp1	a0003 a0003	a0003c0010 a0003c0018 a0003c0010 a0003c0018	a0003c0010t0022 a0003c0018t0019 a0003c0010t0022 a0003c0018t0019	a0003c0010t0022g0166 a0003c0018t0019g0005 a0003c0010t0022g0166 a0003c0018t0019g0005	2	174	0.0115	-18	c.385 others(37): Show c.385+36230_385+36247delGTGTGTGTGTGTGTGTGT	COL26A1	ENSG00000160963.14	transcript	ENST00000313669.12	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
COL26A1_chr7_101357875_101564024	101489754	CTCTCTTT others(11): Show CTCTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0007 a0001c0008t0007	a0001c0008t0007g0077 a0001c0008t0007g0077	1	174	0.0058	-18	c.385 others(37): Show c.385+41971_385+41988delCTTTCTTTCTTTCTTTCT	COL26A1	ENSG00000160963.14	transcript	ENST00000313669.12	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
COL28A1_chr7_7352875_7540873	7400975	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0052 a0001c0001t0001g0052	1	196	0.0051	-18	c.213 others(39): Show c.2136+16866_2136+16883delACACACACACACACACAC	COL28A1	ENSG00000215018.10	transcript	ENST00000399429.8	protein_coding	27/34			chr7	TogoVar
COL28A1_chr7_7352875_7540873	7429422	TCTCTCAC others(11): Show TCTCTCACATACACACACA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02145.hp2 HG02257.hp1 others(9): Show HG02055.hp1 HG02145.hp2 HG02257.hp1 HG02630.hp2 HG02723.hp2 HG02897.hp1 HG02922.hp1 HG02976.hp1 HG03130.hp2 HG03209.hp2 HG03540.hp2 NA19043.hp1	a0002 a0010 a0026 others(1): Show a0002 a0010 a0026 a0031	a0002c0004 a0010c0013 a0010c0028 others(2): Show a0002c0004 a0010c0013 a0010c0028 a0026c0043 a0031c0033	a0002c0004t0003 a0010c0013t0002 a0010c0028t0003 others(2): Show a0002c0004t0003 a0010c0013t0002 a0010c0028t0003 a0026c0043t0007 a0031c0033t0003	a0002c0004t0003g0026 a0002c0004t0003g0027 a0002c0004t0003g0028 others(9): Show a0002c0004t0003g0026 a0002c0004t0003g0027 a0002c0004t0003g0028 a0002c0004t0003g0032 a0002c0004t0003g0033 a0002c0004t0003g0088 a0002c0004t0003g0186 a0010c0013t0002g0019 a0010c0013t0002g0022 a0010c0028t0003g0020 a0026c0043t0007g0029 a0031c0033t0003g0031	12	196	0.0612	-18	c.199 others(37): Show c.1998+3033_1998+3050delTGTGTGTGTATGTGAGAG	COL28A1	ENSG00000215018.10	transcript	ENST00000399429.8	protein_coding	25/34			chr7	TogoVar
COL2A1_chr12_47967967_48009476	48008118	AGAGAGAA others(11): Show AGAGAGAAAGAAAGAAAGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 HG02004.hp1 HG02683.hp2 others(9): Show HG01081.hp2 HG02004.hp1 HG02683.hp2 HG03017.hp2 HG03927.hp1 HG03927.hp2 HG04199.hp2 NA18941.hp1 NA18955.hp1 NA19004.hp1 NA19056.hp1 NA19085.hp1	a0001 a0004 a0001 a0004	a0001c0003 a0001c0004 a0001c0048 others(1): Show a0001c0003 a0001c0004 a0001c0048 a0004c0007	a0001c0003t0001 a0001c0004t0001 a0001c0048t0001 others(1): Show a0001c0003t0001 a0001c0004t0001 a0001c0048t0001 a0004c0007t0001	a0001c0003t0001g0006 a0001c0003t0001g0025 a0001c0003t0001g0053 others(8): Show a0001c0003t0001g0006 a0001c0003t0001g0025 a0001c0003t0001g0053 a0001c0003t0001g0245 a0001c0003t0001g0246 a0001c0003t0001g0262 a0001c0004t0001g0056 a0001c0004t0001g0255 a0001c0048t0001g0260 a0004c0007t0001g0024 a0004c0007t0001g0054	12	414	0.0290	-18	c.-38 others(29): Show c.-3815_-3798delCCTTTCTTTCTTTCTCTC	COL2A1	ENSG00000139219.19	transcript	ENST00000380518.8	protein_coding		3643		chr12	TogoVar
COL2A1_chr12_47967967_48009476	48008119	GAGAGAAA others(11): Show GAGAGAAAGAAAGAAAGGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0242 a0001c0003t0011g0242	1	414	0.0024	-18	c.-38 others(29): Show c.-3816_-3799delTCCTTTCTTTCTTTCTCT	COL2A1	ENSG00000139219.19	transcript	ENST00000380518.8	protein_coding		3644		chr12	TogoVar
COL3A1_chr2_188969373_189017746	189007096	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG06807.hp2 NA18949.hp1 others(1): Show HG03195.hp2 HG06807.hp2 NA18949.hp1 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0159 a0001c0001t0001g0208 a0001c0001t0006g0046 others(1): Show a0001c0001t0001g0159 a0001c0001t0001g0208 a0001c0001t0006g0046 a0001c0001t0006g0113	4	376	0.0106	-18	c.325 others(35): Show c.3255+133_3255+150delATATATATATATATATAT	COL3A1	ENSG00000168542.17	transcript	ENST00000304636.9	protein_coding	44/50		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A1_chr13_110143963_110312157	110201366	CGAGGAGG others(11): Show CGAGGAGGAGGAAGAGGAG	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp2 HG02257.hp2 others(6): Show HG01884.hp1 HG01891.hp2 HG02257.hp2 HG02258.hp1 HG02280.hp1 HG02896.hp1 HG02897.hp2 HG02976.hp1 NA18906.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0003 a0002c0004 a0002c0030 others(2): Show a0001c0003 a0002c0004 a0002c0030 a0002c0048 a0004c0005	a0001c0003t0001 a0002c0004t0007 a0002c0030t0003 others(2): Show a0001c0003t0001 a0002c0004t0007 a0002c0030t0003 a0002c0048t0001 a0004c0005t0001	a0001c0003t0001g0094 a0001c0003t0001g0095 a0002c0004t0007g0174 others(6): Show a0001c0003t0001g0094 a0001c0003t0001g0095 a0002c0004t0007g0174 a0002c0030t0003g0188 a0002c0030t0003g0255 a0002c0048t0001g0186 a0002c0048t0001g0187 a0004c0005t0001g0080 a0004c0005t0001g0081	9	344	0.0262	-18	c.108 others(33): Show c.1084+54_1084+71delCTCCTCTTCCTCCTCCTC	COL4A1	ENSG00000187498.16	transcript	ENST00000375820.10	protein_coding	19/51			chr13	TogoVar
COL4A1_chr13_110143963_110312157	110219864	GTGTGTGT others(11): Show GTGTGTGTATATATGTATA	G G	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0164 a0004c0005t0001g0164	1	344	0.0029	-18	c.145 others(35): Show c.145-5867_145-5850delTATACATATATACACACA	COL4A1	ENSG00000187498.16	transcript	ENST00000375820.10	protein_coding	2/51			chr13	TogoVar
COL4A3_chr2_227159624_227319792	227202846	CATATGTG others(11): Show CATATGTGTATATATACAT	C C	intron_variant intron_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0001 a0002c0007t0001	a0002c0007t0001g0019 a0002c0007t0001g0019	1	344	0.0029	-18	c.88- others(35): Show c.88-35101_88-35084delATGTGTATATATACATAT	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227203084	TATATATG others(11): Show TATATATGTGTATATATAC	T T	intron_variant intron_variant	MODIFIER	HG04115.hp1 NA18747.hp2 NA18953.hp2 others(1): Show HG04115.hp1 NA18747.hp2 NA18953.hp2 NA19079.hp1	a0002 a0009 a0010 others(1): Show a0002 a0009 a0010 a0015	a0002c0004 a0009c0008 a0010c0018 others(1): Show a0002c0004 a0009c0008 a0010c0018 a0015c0025	a0002c0004t0003 a0009c0008t0001 a0010c0018t0002 others(1): Show a0002c0004t0003 a0009c0008t0001 a0010c0018t0002 a0015c0025t0003	a0002c0004t0003g0259 a0009c0008t0001g0110 a0010c0018t0002g0202 others(1): Show a0002c0004t0003g0259 a0009c0008t0001g0110 a0010c0018t0002g0202 a0015c0025t0003g0206	4	344	0.0116	-18	c.88- others(35): Show c.88-34867_88-34850delACATATATGTGTATATAT	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227203298	TATATATG others(11): Show TATATATGTGTATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02809.hp1 HG03540.hp2 others(2): Show HG00558.hp1 HG02809.hp1 HG03540.hp2 NA18522.hp1 NA19005.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0009	a0001c0001 a0002c0007 a0003c0011 others(2): Show a0001c0001 a0002c0007 a0003c0011 a0003c0044 a0009c0008	a0001c0001t0001 a0002c0007t0001 a0003c0011t0010 others(2): Show a0001c0001t0001 a0002c0007t0001 a0003c0011t0010 a0003c0044t0012 a0009c0008t0001	a0001c0001t0001g0120 a0002c0007t0001g0311 a0003c0011t0010g0341 others(2): Show a0001c0001t0001g0120 a0002c0007t0001g0311 a0003c0011t0010g0341 a0003c0044t0012g0047 a0009c0008t0001g0224	5	344	0.0145	-18	c.88- others(35): Show c.88-34656_88-34639delTATACATATATGTGTATA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227203312	TATACATA others(11): Show TATACATATATGTGTATAC	T T	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0006 a0006c0010t0006	a0006c0010t0006g0156 a0006c0010t0006g0156	1	344	0.0029	-18	c.88- others(35): Show c.88-34638_88-34621delCATACATATATGTGTATA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227203344	TATATATG others(11): Show TATATATGTGTATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01099.hp1 HG01516.hp2 others(6): Show HG00639.hp1 HG01099.hp1 HG01516.hp2 HG02451.hp2 HG02559.hp1 HG02895.hp2 HG02896.hp2 HG02897.hp2 NA18906.hp2	a0002 a0004 a0010 others(3): Show a0002 a0004 a0010 a0029 a0031 a0037	a0002c0004 a0004c0003 a0010c0051 others(3): Show a0002c0004 a0004c0003 a0010c0051 a0029c0035 a0031c0038 a0037c0056	a0002c0004t0006 a0002c0004t0008 a0004c0003t0004 others(4): Show a0002c0004t0006 a0002c0004t0008 a0004c0003t0004 a0010c0051t0002 a0029c0035t0004 a0031c0038t0003 a0037c0056t0004	a0002c0004t0006g0234 a0002c0004t0008g0240 a0002c0004t0008g0246 others(6): Show a0002c0004t0006g0234 a0002c0004t0008g0240 a0002c0004t0008g0246 a0004c0003t0004g0254 a0004c0003t0004g0255 a0010c0051t0002g0145 a0029c0035t0004g0308 a0031c0038t0003g0103 a0037c0056t0004g0009	9	344	0.0262	-18	c.88- others(35): Show c.88-34610_88-34593delTATACATATATGTGTATA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227203419	ATACATAC others(11): Show ATACATACATATATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01496.hp1 HG02109.hp2 others(10): Show HG01106.hp1 HG01496.hp1 HG02109.hp2 HG02559.hp2 HG02738.hp2 HG02809.hp1 HG02922.hp2 HG03669.hp2 HG04115.hp1 NA18747.hp2 NA18953.hp2 NA19079.hp1 NA20129.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0009 a0010 a0015 a0025	a0001c0001 a0002c0004 a0002c0007 others(6): Show a0001c0001 a0002c0004 a0002c0007 a0002c0026 a0003c0011 a0009c0008 a0010c0018 a0015c0025 a0025c0043	a0001c0001t0001 a0002c0004t0003 a0002c0007t0001 others(7): Show a0001c0001t0001 a0002c0004t0003 a0002c0007t0001 a0002c0007t0003 a0002c0026t0014 a0003c0011t0009 a0009c0008t0001 a0010c0018t0002 a0015c0025t0003 a0025c0043t0012	a0001c0001t0001g0101 a0001c0001t0001g0134 a0002c0004t0003g0259 others(10): Show a0001c0001t0001g0101 a0001c0001t0001g0134 a0002c0004t0003g0259 a0002c0007t0001g0311 a0002c0007t0003g0092 a0002c0026t0014g0071 a0002c0026t0014g0146 a0003c0011t0009g0102 a0009c0008t0001g0110 a0010c0018t0002g0108 a0010c0018t0002g0202 a0015c0025t0003g0206 a0025c0043t0012g0233	13	344	0.0378	-18	c.88- others(35): Show c.88-34546_88-34529delCATACATATATGTGTGTA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227208793	CACACACA others(11): Show CACACACACACACATATAT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01071.hp1 HG01099.hp1 others(22): Show HG00639.hp1 HG01071.hp1 HG01099.hp1 HG01516.hp2 HG02055.hp2 HG02280.hp2 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02630.hp2 HG02698.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA20905.hp1	a0004 a0006 a0012 others(7): Show a0004 a0006 a0012 a0014 a0029 a0030 a0031 a0032 a0033 a0038	a0004c0003 a0006c0010 a0006c0013 others(11): Show a0004c0003 a0006c0010 a0006c0013 a0006c0016 a0006c0034 a0012c0017 a0012c0022 a0014c0023 a0029c0035 a0030c0036 a0031c0038 a0032c0032 a0033c0030 a0038c0055	a0004c0003t0004 a0006c0010t0001 a0006c0010t0003 others(15): Show a0004c0003t0004 a0006c0010t0001 a0006c0010t0003 a0006c0010t0006 a0006c0013t0001 a0006c0013t0009 a0006c0016t0001 a0006c0034t0006 a0012c0017t0006 a0012c0017t0008 a0012c0022t0001 a0014c0023t0002 a0029c0035t0004 a0030c0036t0011 a0031c0038t0003 a0032c0032t0012 a0033c0030t0011 a0038c0055t0001	a0004c0003t0004g0254 a0004c0003t0004g0255 a0006c0010t0001g0014 others(22): Show a0004c0003t0004g0254 a0004c0003t0004g0255 a0006c0010t0001g0014 a0006c0010t0003g0245 a0006c0010t0006g0058 a0006c0010t0006g0063 a0006c0010t0006g0066 a0006c0010t0006g0072 a0006c0010t0006g0156 a0006c0013t0001g0329 a0006c0013t0009g0216 a0006c0013t0009g0226 a0006c0016t0001g0225 a0006c0034t0006g0070 a0012c0017t0006g0003 a0012c0017t0008g0055 a0012c0022t0001g0004 a0014c0023t0002g0080 a0014c0023t0002g0338 a0029c0035t0004g0308 a0030c0036t0011g0044 a0031c0038t0003g0103 a0032c0032t0012g0062 a0033c0030t0011g0043 a0038c0055t0001g0007	25	344	0.0727	-18	c.88- others(35): Show c.88-29171_88-29154delCACACACACATATATACA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227222148	AATAATAA others(11): Show AATAATAATAATAATAATG	A A	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02004.hp1 HG02004.hp2 others(21): Show HG01981.hp1 HG02004.hp1 HG02004.hp2 HG02074.hp2 HG02080.hp1 HG03017.hp1 HG03669.hp1 HG03831.hp1 HG04228.hp1 NA18953.hp1 NA18954.hp2 NA18959.hp2 NA18960.hp2 NA18965.hp2 NA18974.hp1 NA18974.hp2 NA18981.hp1 NA18983.hp2 NA18990.hp1 NA18994.hp2 NA18999.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp2	a0001 a0003 a0004 others(5): Show a0001 a0003 a0004 a0007 a0009 a0013 a0023 a0024	a0001c0001 a0003c0002 a0004c0003 others(5): Show a0001c0001 a0003c0002 a0004c0003 a0007c0006 a0009c0008 a0013c0015 a0023c0046 a0024c0045	a0001c0001t0001 a0001c0001t0002 a0003c0002t0003 others(7): Show a0001c0001t0001 a0001c0001t0002 a0003c0002t0003 a0004c0003t0003 a0004c0003t0004 a0007c0006t0005 a0009c0008t0001 a0013c0015t0002 a0023c0046t0001 a0024c0045t0002	a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0022 others(21): Show a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0117 a0001c0001t0001g0170 a0001c0001t0001g0186 a0001c0001t0001g0222 a0001c0001t0001g0319 a0001c0001t0002g0097 a0001c0001t0002g0150 a0001c0001t0002g0163 a0001c0001t0002g0305 a0003c0002t0003g0218 a0004c0003t0003g0251 a0004c0003t0004g0256 a0007c0006t0005g0133 a0009c0008t0001g0077 a0009c0008t0001g0238 a0013c0015t0002g0151 a0023c0046t0001g0313 a0024c0045t0002g0076	24	344	0.0698	-18	c.88- others(35): Show c.88-15814_88-15797delAATAATAATAATGATAAT	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	1/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A3_chr2_227159624_227319792	227291575	AAAAACAA others(11): Show AAAAACAAAAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00673.hp2 HG00735.hp2 others(32): Show HG00099.hp1 HG00673.hp2 HG00735.hp2 HG01074.hp2 HG01081.hp1 HG01243.hp1 HG01256.hp2 HG01433.hp1 HG01496.hp1 HG01516.hp2 HG02004.hp2 HG02258.hp2 HG02280.hp1 HG02683.hp1 HG02698.hp2 HG03098.hp1 HG03130.hp2 HG03710.hp1 HG03834.hp1 NA18522.hp1 NA18953.hp1 NA18954.hp1 NA18959.hp1 NA18974.hp2 NA18975.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18994.hp1 NA18995.hp1 NA19010.hp1 NA19043.hp1 NA19240.hp2 NA20752.hp1 NA20805.hp1	a0001 a0002 a0003 others(7): Show a0001 a0002 a0003 a0005 a0006 a0010 a0011 a0016 a0018 a0031	a0001c0001 a0002c0004 a0002c0027 others(9): Show a0001c0001 a0002c0004 a0002c0027 a0003c0002 a0003c0044 a0005c0005 a0006c0010 a0010c0018 a0011c0021 a0016c0024 a0018c0028 a0031c0038	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(12): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0016 a0002c0004t0003 a0002c0027t0012 a0003c0002t0003 a0003c0044t0012 a0005c0005t0007 a0006c0010t0003 a0010c0018t0002 a0011c0021t0003 a0016c0024t0002 a0018c0028t0003 a0031c0038t0003	a0001c0001t0002g0150 a0001c0001t0002g0173 a0001c0001t0002g0305 others(32): Show a0001c0001t0002g0150 a0001c0001t0002g0173 a0001c0001t0002g0305 a0001c0001t0003g0274 a0001c0001t0005g0051 a0001c0001t0016g0048 a0002c0004t0003g0124 a0002c0004t0003g0125 a0002c0004t0003g0334 a0002c0027t0012g0011 a0003c0002t0003g0088 a0003c0002t0003g0099 a0003c0002t0003g0107 a0003c0002t0003g0137 a0003c0002t0003g0159 a0003c0002t0003g0160 a0003c0002t0003g0174 a0003c0002t0003g0175 a0003c0002t0003g0182 a0003c0002t0003g0218 a0003c0002t0003g0220 a0003c0002t0003g0312 a0003c0002t0003g0314 a0003c0002t0003g0326 a0003c0044t0012g0047 a0005c0005t0007g0215 a0005c0005t0007g0249 a0006c0010t0003g0095 a0010c0018t0002g0104 a0010c0018t0002g0108 a0011c0021t0003g0320 a0011c0021t0003g0323 a0016c0024t0002g0232 a0018c0028t0003g0012 a0031c0038t0003g0103	35	344	0.1017	-18	c.321 others(35): Show c.3210+694_3210+711delCAAAAAAAAAAAACAAAA	COL4A3	ENSG00000169031.21	transcript	ENST00000396578.8	protein_coding	37/51		INFO_REALIGN_3_PRIME	chr2	TogoVar
COL4A4_chr2_226997714_227169205	227041820	GAAAGAAA others(11): Show GAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	NA18946.hp1 NA18946.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0002 a0004c0004t0002	a0004c0004t0002g0042 a0004c0004t0002g0042	1	284	0.0035	-18	c.350 others(35): Show c.3505+310_3505+327delTTCTTTCTTTCTTTCTTT	COL4A4	ENSG00000081052.14	transcript	ENST00000396625.5	protein_coding	37/47			chr2	TogoVar
COL4A4_chr2_226997714_227169205	227091247	CAGATATA others(11): Show CAGATATAGATATAGATAT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0030 a0003c0003t0030	a0003c0003t0030g0169 a0003c0003t0030g0169	1	284	0.0035	-18	c.137 others(37): Show c.1370-1308_1370-1291delATATCTATATCTATATCT	COL4A4	ENSG00000081052.14	transcript	ENST00000396625.5	protein_coding	20/47			chr2	TogoVar
COL4A5_chrX_108434838_108702545	108526653	TTTCTTTC others(11): Show TTTCTTTCTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01074.hp1 HG01433.hp1 HG00099.hp2 HG01074.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 a0001c0001t0001 a0001c0001t0005 a0001c0001t0010	a0001c0001t0001g0186 a0001c0001t0005g0185 a0001c0001t0010g0198 a0001c0001t0001g0186 a0001c0001t0005g0185 a0001c0001t0010g0198	3	269	0.0112	-18	c.82- others(35): Show c.82-13091_82-13074delTCTTTCTTCTTTCTTTCT	COL4A5	ENSG00000188153.14	transcript	ENST00000328300.11	protein_coding	1/52		INFO_REALIGN_3_PRIME	chrX	TogoVar
COL4A5_chrX_108434838_108702545	108526656	CTTTCTTC others(11): Show CTTTCTTCTTTCTTTCTCT	C C	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0062 a0001c0003t0001g0062	1	269	0.0037	-18	c.82- others(35): Show c.82-13087_82-13070delTCTTCTTTCTTTCTCTTT	COL4A5	ENSG00000188153.14	transcript	ENST00000328300.11	protein_coding	1/52		INFO_REALIGN_3_PRIME	chrX	TogoVar
COL4A6_chrX_108150614_108443422	108310221	CTTTAAAA others(11): Show CTTTAAAACGTATCCTATG	C C	intron_variant intron_variant	MODIFIER	NA19085.hp1 NA19085.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0026 a0002c0003t0001g0026	1	234	0.0043	-18	c.144 others(33): Show c.144+509_144+526delCATAGGATACGTTTTAAA	COL4A6	ENSG00000197565.17	transcript	ENST00000334504.12	protein_coding	3/44			chrX	TogoVar
COL4A6_chrX_108150614_108443422	108343157	ATATATAT others(11): Show ATATATATAGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03486.hp2 HG03540.hp1 HG02622.hp2 HG03486.hp2 HG03540.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0009 a0004c0006t0001g0010 a0004c0006t0001g0011 a0004c0006t0001g0009 a0004c0006t0001g0010 a0004c0006t0001g0011	3	234	0.0128	-18	c.64- others(35): Show c.64-32347_64-32330delACACACACACTATATATA	COL4A6	ENSG00000197565.17	transcript	ENST00000334504.12	protein_coding	2/44			chrX	TogoVar
COL4A6_chrX_108150614_108443422	108351436	CTCTCTCT others(11): Show CTCTCTCTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03486.hp2 HG03540.hp1 HG02622.hp2 HG03486.hp2 HG03540.hp1	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0009 a0004c0006t0001g0010 a0004c0006t0001g0011 a0004c0006t0001g0009 a0004c0006t0001g0010 a0004c0006t0001g0011	3	234	0.0128	-18	c.64- others(35): Show c.64-40626_64-40609delCACACACACACAGAGAGA	COL4A6	ENSG00000197565.17	transcript	ENST00000334504.12	protein_coding	2/44			chrX	TogoVar
COL5A1_chr9_134636803_134849843	134679578	GGGCACTG others(11): Show GGGCACTGTGGGGCTGGTT	G G	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02896.hp2 HG02897.hp2 others(1): Show HG02717.hp1 HG02896.hp2 HG02897.hp2 NA20300.hp2	a0001 a0001	a0001c0003 a0001c0005 a0001c0007 a0001c0003 a0001c0005 a0001c0007	a0001c0003t0025 a0001c0005t0003 a0001c0007t0014 a0001c0003t0025 a0001c0005t0003 a0001c0007t0014	a0001c0003t0025g0043 a0001c0003t0025g0218 a0001c0005t0003g0265 others(1): Show a0001c0003t0025g0043 a0001c0003t0025g0218 a0001c0005t0003g0265 a0001c0007t0014g0044	4	272	0.0147	-18	c.110 others(37): Show c.110-11331_110-11314delCACTGTGGGGCTGGTTGG	COL5A1	ENSG00000130635.17	transcript	ENST00000371817.8	protein_coding	1/65		INFO_REALIGN_3_PRIME	chr9	TogoVar
COL5A1_chr9_134636803_134849843	134747861	ACACACAT others(11): Show ACACACATGCAGACACATG	A A	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0014 a0014	a0014c0053 a0014c0053	a0014c0053t0029 a0014c0053t0029	a0014c0053t0029g0134 a0014c0053t0029g0134	1	272	0.0037	-18	c.149 others(37): Show c.1495-2670_1495-2653delGACACATGCACACATGCA	COL5A1	ENSG00000130635.17	transcript	ENST00000371817.8	protein_coding	11/65		INFO_REALIGN_3_PRIME	chr9	TogoVar
COL5A1_chr9_134636803_134849843	134761197	CCACATGC others(11): Show CCACATGCACACAGGCATA	C C	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp2 HG02647.hp2 others(1): Show HG02451.hp1 HG02486.hp2 HG02647.hp2 NA20300.hp2	a0001 a0001	a0001c0005 a0001c0007 a0001c0005 a0001c0007	a0001c0005t0003 a0001c0005t0006 a0001c0005t0014 others(1): Show a0001c0005t0003 a0001c0005t0006 a0001c0005t0014 a0001c0007t0023	a0001c0005t0003g0265 a0001c0005t0006g0040 a0001c0005t0014g0258 others(1): Show a0001c0005t0003g0265 a0001c0005t0006g0040 a0001c0005t0014g0258 a0001c0007t0023g0232	4	272	0.0147	-18	c.193 others(35): Show c.1936-715_1936-698delGGCATACACATGCACACA	COL5A1	ENSG00000130635.17	transcript	ENST00000371817.8	protein_coding	18/65		INFO_REALIGN_3_PRIME	chr9	TogoVar
COL5A1_chr9_134636803_134849843	134792791	GTGTGCAT others(11): Show GTGTGCATGTGTGCGTGCA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02055.hp1 HG02155.hp2 others(17): Show HG01891.hp2 HG02055.hp1 HG02155.hp2 HG02257.hp2 HG02258.hp2 HG02451.hp2 HG02717.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG03041.hp1 HG03195.hp1 NA18950.hp1 NA18983.hp1 NA19043.hp2 NA19064.hp1 NA19070.hp2 NA20129.hp1 NA20805.hp2 NA21309.hp1	a0001 a0005 a0014 a0001 a0005 a0014	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0007 a0001c0011 a0001c0016 a0001c0025 a0005c0062 a0014c0053	a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 others(15): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0012 a0001c0001t0031 a0001c0002t0002 a0001c0003t0007 a0001c0003t0008 a0001c0003t0025 a0001c0003t0032 a0001c0003t0036 a0001c0007t0014 a0001c0011t0007 a0001c0016t0001 a0001c0016t0012 a0001c0016t0046 a0001c0025t0008 a0005c0062t0011 a0014c0053t0029	a0001c0001t0001g0033 a0001c0001t0003g0133 a0001c0001t0003g0146 others(17): Show a0001c0001t0001g0033 a0001c0001t0003g0133 a0001c0001t0003g0146 a0001c0001t0012g0242 a0001c0001t0031g0075 a0001c0002t0002g0096 a0001c0003t0007g0003 a0001c0003t0008g0187 a0001c0003t0025g0043 a0001c0003t0025g0218 a0001c0003t0032g0004 a0001c0003t0036g0051 a0001c0007t0014g0044 a0001c0011t0007g0027 a0001c0016t0001g0022 a0001c0016t0012g0021 a0001c0016t0046g0020 a0001c0025t0008g0203 a0005c0062t0011g0026 a0014c0053t0029g0134	20	272	0.0735	-18	c.270 others(37): Show c.2701-2286_2701-2269delCATGTGTGCGTGCATGTG	COL5A1	ENSG00000130635.17	transcript	ENST00000371817.8	protein_coding	32/65		INFO_REALIGN_3_PRIME	chr9	TogoVar
COL5A2_chr2_189026898_189184761	189094588	GACACACA others(11): Show GACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0010 a0001c0012t0010	a0001c0012t0010g0040 a0001c0012t0010g0126 a0001c0012t0010g0040 a0001c0012t0010g0126	2	248	0.0081	-18	c.457 others(35): Show c.457-2186_457-2169delGTGTGTGTGTGTGTGTGT	COL5A2	ENSG00000204262.14	transcript	ENST00000374866.9	protein_coding	6/53			chr2	TogoVar
COL5A3_chr19_9954561_10015504	9964854	TAAAAAAA others(11): Show TAAAAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01069.hp2 HG01099.hp1 others(11): Show HG00621.hp1 HG01069.hp2 HG01099.hp1 HG01106.hp1 HG01167.hp1 HG01169.hp2 HG01358.hp2 HG01496.hp1 NA18949.hp1 NA18949.hp2 NA18963.hp1 NA18982.hp2 NA19063.hp2 NA20300.hp2	a0001 a0009 a0010 a0001 a0009 a0010	a0001c0001 a0001c0112 a0009c0007 others(3): Show a0001c0001 a0001c0112 a0009c0007 a0009c0048 a0010c0015 a0010c0052	a0001c0001t0001 a0001c0112t0004 a0009c0007t0001 others(5): Show a0001c0001t0001 a0001c0112t0004 a0009c0007t0001 a0009c0007t0022 a0009c0007t0024 a0009c0048t0001 a0010c0015t0001 a0010c0052t0010	a0001c0001t0001g0207 a0001c0112t0004g0133 a0009c0007t0001g0220 others(11): Show a0001c0001t0001g0207 a0001c0112t0004g0133 a0009c0007t0001g0220 a0009c0007t0001g0221 a0009c0007t0001g0229 a0009c0007t0001g0231 a0009c0007t0001g0239 a0009c0007t0001g0242 a0009c0007t0022g0076 a0009c0007t0024g0109 a0009c0048t0001g0234 a0010c0015t0001g0103 a0010c0015t0001g0104 a0010c0052t0010g0333	14	412	0.0340	-18	c.478 others(37): Show c.4782+1442_4782+1459delTTTTTTTTTTTTTTTTTT	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	64/66			chr19	TogoVar
COL5A3_chr19_9954561_10015504	9970212	TGGGTGAG others(11): Show TGGGTGAGTGGGGGCTGTG	T T	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp1 HG00423.hp2 others(19): Show HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00673.hp2 HG01175.hp1 HG01516.hp2 HG01517.hp1 HG02135.hp2 HG03669.hp1 HG03704.hp1 HG04115.hp1 HG04199.hp2 NA18940.hp2 NA18948.hp2 NA18951.hp2 NA18969.hp2 NA18986.hp2 NA19000.hp2 NA19057.hp2 NA19063.hp1 NA19079.hp1 NA19087.hp2	a0004 a0025 a0045 others(3): Show a0004 a0025 a0045 a0057 a0061 a0075	a0004c0010 a0004c0013 a0004c0108 others(5): Show a0004c0010 a0004c0013 a0004c0108 a0025c0031 a0045c0071 a0057c0141 a0061c0109 a0075c0091	a0004c0010t0001 a0004c0010t0004 a0004c0010t0023 others(9): Show a0004c0010t0001 a0004c0010t0004 a0004c0010t0023 a0004c0013t0004 a0004c0013t0019 a0004c0108t0004 a0025c0031t0001 a0025c0031t0004 a0045c0071t0004 a0057c0141t0002 a0061c0109t0004 a0075c0091t0004	a0004c0010t0001g0267 a0004c0010t0004g0033 a0004c0010t0004g0157 others(19): Show a0004c0010t0001g0267 a0004c0010t0004g0033 a0004c0010t0004g0157 a0004c0010t0004g0159 a0004c0010t0004g0160 a0004c0010t0004g0161 a0004c0010t0004g0162 a0004c0010t0023g0034 a0004c0013t0004g0072 a0004c0013t0004g0083 a0004c0013t0004g0098 a0004c0013t0004g0099 a0004c0013t0004g0308 a0004c0013t0019g0097 a0004c0108t0004g0362 a0025c0031t0001g0296 a0025c0031t0001g0297 a0025c0031t0004g0131 a0045c0071t0004g0155 a0057c0141t0002g0067 a0061c0109t0004g0081 a0075c0091t0004g0014	22	412	0.0534	-18	c.393 others(35): Show c.3937-308_3937-291delCACAGCCCCCACTCACCC	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	54/66			chr19	TogoVar
COL5A3_chr19_9954561_10015504	9970407	GGGTGAGT others(11): Show GGGTGAGTGGGGGCTGTAA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp1 HG00423.hp2 others(19): Show HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00673.hp2 HG01175.hp1 HG01516.hp2 HG01517.hp1 HG02135.hp2 HG03669.hp1 HG03704.hp1 HG04115.hp1 HG04199.hp2 NA18940.hp2 NA18948.hp2 NA18951.hp2 NA18969.hp2 NA18986.hp2 NA19000.hp2 NA19057.hp2 NA19063.hp1 NA19079.hp1 NA19087.hp2	a0004 a0025 a0045 others(3): Show a0004 a0025 a0045 a0057 a0061 a0075	a0004c0010 a0004c0013 a0004c0108 others(5): Show a0004c0010 a0004c0013 a0004c0108 a0025c0031 a0045c0071 a0057c0141 a0061c0109 a0075c0091	a0004c0010t0001 a0004c0010t0004 a0004c0010t0023 others(9): Show a0004c0010t0001 a0004c0010t0004 a0004c0010t0023 a0004c0013t0004 a0004c0013t0019 a0004c0108t0004 a0025c0031t0001 a0025c0031t0004 a0045c0071t0004 a0057c0141t0002 a0061c0109t0004 a0075c0091t0004	a0004c0010t0001g0267 a0004c0010t0004g0033 a0004c0010t0004g0157 others(19): Show a0004c0010t0001g0267 a0004c0010t0004g0033 a0004c0010t0004g0157 a0004c0010t0004g0159 a0004c0010t0004g0160 a0004c0010t0004g0161 a0004c0010t0004g0162 a0004c0010t0023g0034 a0004c0013t0004g0072 a0004c0013t0004g0083 a0004c0013t0004g0098 a0004c0013t0004g0099 a0004c0013t0004g0308 a0004c0013t0019g0097 a0004c0108t0004g0362 a0025c0031t0001g0296 a0025c0031t0001g0297 a0025c0031t0004g0131 a0045c0071t0004g0155 a0057c0141t0002g0067 a0061c0109t0004g0081 a0075c0091t0004g0014	22	412	0.0534	-18	c.393 others(35): Show c.3936+197_3936+214delTTACAGCCCCCACTCACC	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	54/66			chr19	TogoVar
COL5A3_chr19_9954561_10015504	9977947	CATATATA others(11): Show CATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00597.hp2 HG00733.hp1 others(79): Show HG00408.hp1 HG00597.hp2 HG00733.hp1 HG00738.hp2 HG01070.hp2 HG01081.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01243.hp1 HG01261.hp2 HG01516.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp2 HG01934.hp1 HG02004.hp2 HG02015.hp2 HG02109.hp2 HG02155.hp1 HG02155.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02572.hp2 HG02630.hp1 HG02738.hp1 HG02738.hp2 HG02896.hp1 HG02897.hp2 HG02965.hp1 HG02976.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03669.hp1 HG03710.hp1 HG03831.hp2 HG04228.hp2 NA18612.hp1 NA18939.hp1 NA18940.hp1 NA18942.hp2 NA18943.hp2 NA18945.hp2 NA18948.hp1 NA18951.hp1 NA18956.hp1 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18960.hp1 NA18964.hp1 NA18965.hp1 NA18969.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp2 NA18983.hp2 NA18987.hp2 NA18990.hp2 NA19002.hp1 NA19012.hp1 NA19012.hp2 NA19030.hp2 NA19043.hp2 NA19056.hp2 NA19066.hp1 NA19067.hp2 NA19070.hp2 NA19088.hp2 NA19240.hp2 NA20129.hp1 NA21309.hp2	a0002 a0013 a0016 others(21): Show a0002 a0013 a0016 a0019 a0021 a0025 a0027 a0037 a0039 a0041 a0047 a0050 a0051 a0052 a0053 a0054 a0057 a0063 a0064 a0067 a0068 a0069 a0071 a0073	a0002c0002 a0002c0020 a0002c0034 others(34): Show a0002c0002 a0002c0020 a0002c0034 a0002c0041 a0002c0053 a0002c0083 a0002c0126 a0002c0130 a0002c0139 a0013c0008 a0016c0036 a0016c0037 a0016c0074 a0016c0107 a0019c0028 a0019c0069 a0021c0038 a0025c0031 a0027c0054 a0027c0084 a0037c0046 a0039c0067 a0041c0063 a0047c0133 a0050c0115 a0051c0127 a0052c0128 a0053c0129 a0054c0118 a0057c0141 a0063c0134 a0064c0076 a0067c0100 a0068c0101 a0069c0099 a0071c0095 a0073c0096	a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 others(41): Show a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 a0002c0020t0001 a0002c0020t0002 a0002c0034t0002 a0002c0041t0001 a0002c0041t0002 a0002c0053t0001 a0002c0083t0005 a0002c0126t0001 a0002c0130t0001 a0002c0139t0002 a0013c0008t0001 a0016c0036t0001 a0016c0036t0002 a0016c0037t0002 a0016c0074t0002 a0016c0107t0002 a0019c0028t0001 a0019c0028t0002 a0019c0069t0002 a0021c0038t0001 a0025c0031t0001 a0025c0031t0004 a0027c0054t0013 a0027c0084t0012 a0037c0046t0003 a0039c0067t0002 a0041c0063t0012 a0047c0133t0001 a0050c0115t0002 a0051c0127t0003 a0052c0128t0001 a0053c0129t0006 a0054c0118t0002 a0057c0141t0002 a0063c0134t0001 a0064c0076t0007 a0067c0100t0001 a0068c0101t0004 a0069c0099t0002 a0071c0095t0002 a0073c0096t0002	a0002c0002t0001g0069 a0002c0002t0001g0313 a0002c0002t0001g0315 others(79): Show a0002c0002t0001g0069 a0002c0002t0001g0313 a0002c0002t0001g0315 a0002c0002t0002g0078 a0002c0002t0002g0218 a0002c0002t0002g0285 a0002c0002t0002g0309 a0002c0002t0002g0310 a0002c0002t0002g0312 a0002c0002t0002g0316 a0002c0002t0002g0318 a0002c0002t0002g0337 a0002c0002t0002g0342 a0002c0002t0002g0345 a0002c0002t0002g0364 a0002c0002t0002g0365 a0002c0002t0002g0368 a0002c0002t0002g0374 a0002c0002t0002g0408 a0002c0002t0005g0065 a0002c0020t0001g0070 a0002c0020t0001g0105 a0002c0020t0001g0232 a0002c0020t0002g0096 a0002c0020t0002g0404 a0002c0034t0002g0163 a0002c0034t0002g0258 a0002c0041t0001g0215 a0002c0041t0002g0026 a0002c0053t0001g0344 a0002c0053t0001g0382 a0002c0083t0005g0156 a0002c0126t0001g0118 a0002c0130t0001g0314 a0002c0139t0002g0059 a0013c0008t0001g0044 a0013c0008t0001g0045 a0013c0008t0001g0046 a0013c0008t0001g0047 a0013c0008t0001g0048 a0013c0008t0001g0050 a0013c0008t0001g0051 a0013c0008t0001g0052 a0013c0008t0001g0405 a0016c0036t0001g0236 a0016c0036t0001g0237 a0016c0036t0002g0148 a0016c0037t0002g0249 a0016c0037t0002g0250 a0016c0037t0002g0251 a0016c0074t0002g0134 a0016c0107t0002g0235 a0019c0028t0001g0185 a0019c0028t0001g0259 a0019c0028t0002g0173 a0019c0069t0002g0334 a0021c0038t0001g0108 a0021c0038t0001g0111 a0025c0031t0001g0296 a0025c0031t0001g0297 a0025c0031t0004g0131 a0027c0054t0013g0004 a0027c0054t0013g0005 a0027c0084t0012g0167 a0037c0046t0003g0027 a0037c0046t0003g0030 a0039c0067t0002g0335 a0041c0063t0012g0190 a0047c0133t0001g0367 a0050c0115t0002g0390 a0051c0127t0003g0252 a0052c0128t0001g0277 a0053c0129t0006g0058 a0054c0118t0002g0287 a0057c0141t0002g0067 a0063c0134t0001g0304 a0064c0076t0007g0042 a0067c0100t0001g0038 a0068c0101t0004g0039 a0069c0099t0002g0040 a0071c0095t0002g0036 a0073c0096t0002g0007	82	412	0.1990	-18	c.301 others(35): Show c.3019-264_3019-247delATATATATATATATATAT	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	41/66			chr19	TogoVar
COL5A3_chr19_9954561_10015504	9983576	GAAAGAAA others(11): Show GAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0071 a0071	a0071c0095 a0071c0095	a0071c0095t0002 a0071c0095t0002	a0071c0095t0002g0036 a0071c0095t0002g0036	1	412	0.0024	-18	c.240 others(37): Show c.2407-1476_2407-1459delTTCTTTCTTTCTTTCTTT	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	31/66			chr19	TogoVar
COL5A3_chr19_9954561_10015504	9994559	CATATATA others(11): Show CATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG02071.hp1 others(1): Show HG01069.hp1 HG01071.hp2 HG02071.hp1 HG02630.hp2	a0001 a0008 a0070 a0001 a0008 a0070	a0001c0016 a0008c0004 a0070c0098 a0001c0016 a0008c0004 a0070c0098	a0001c0016t0002 a0008c0004t0001 a0070c0098t0001 a0001c0016t0002 a0008c0004t0001 a0070c0098t0001	a0001c0016t0002g0001 a0008c0004t0001g0022 a0070c0098t0001g0006 a0001c0016t0002g0001 a0008c0004t0001g0022 a0070c0098t0001g0006	4	412	0.0097	-18	c.158 others(35): Show c.1588-771_1588-754delATATATATATATATATAT	COL5A3	ENSG00000080573.7	transcript	ENST00000264828.4	protein_coding	16/66			chr19	TogoVar
COL6A1_chr21_45976770_46010048	45981581	CCCGCCCC others(11): Show CCCGCCCCGCCCCTCCCCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG01074.hp2 HG01255.hp1 others(2): Show HG01074.hp1 HG01074.hp2 HG01255.hp1 HG01361.hp1 HG04228.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0017 others(1): Show a0001c0001 a0001c0003 a0001c0017 a0002c0002	a0001c0001t0003 a0001c0003t0003 a0001c0017t0003 others(1): Show a0001c0001t0003 a0001c0003t0003 a0001c0017t0003 a0002c0002t0004	a0001c0001t0003g0014 a0001c0003t0003g0036 a0001c0017t0003g0016 others(2): Show a0001c0001t0003g0014 a0001c0003t0003g0036 a0001c0017t0003g0016 a0002c0002t0004g0021 a0002c0002t0004g0028	5	128	0.0391	-18	c.-26 others(27): Show c.-269_-252delCCGCCCCGCCCCTCCCCT	COL6A1	ENSG00000142156.16	transcript	ENST00000361866.8	protein_coding		188		chr21	TogoVar
COL6A1_chr21_45976770_46010048	45981585	CCCCGCCC others(11): Show CCCCGCCCCTCCCCTCCCG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG03017.hp2 HG00323.hp2 HG03017.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0002 a0001c0003 a0002c0002	a0001c0003t0006 a0002c0002t0004 a0001c0003t0006 a0002c0002t0004	a0001c0003t0006g0024 a0002c0002t0004g0023 a0001c0003t0006g0024 a0002c0002t0004g0023	2	128	0.0156	-18	c.-26 others(27): Show c.-265_-248delCCCGCCCCTCCCCTCCCG	COL6A1	ENSG00000142156.16	transcript	ENST00000361866.8	protein_coding		184		chr21	TogoVar
COL6A1_chr21_45976770_46010048	45981604	CCCCGCCC others(11): Show CCCCGCCCCTCCCCTCCCG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 HG02602.hp1 HG02258.hp2 HG02602.hp1	a0002 a0005 a0002 a0005	a0002c0002 a0005c0006 a0002c0002 a0005c0006	a0002c0002t0001 a0005c0006t0001 a0002c0002t0001 a0005c0006t0001	a0002c0002t0001g0127 a0005c0006t0001g0071 a0002c0002t0001g0127 a0005c0006t0001g0071	2	128	0.0156	-18	c.-24 others(27): Show c.-246_-229delCCCGCCCCTCCCCTCCCG	COL6A1	ENSG00000142156.16	transcript	ENST00000361866.8	protein_coding		165		chr21	TogoVar
COL6A2_chr21_46093112_46134801	46116926	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02055.hp2 HG02083.hp2 others(6): Show HG00639.hp2 HG02055.hp2 HG02083.hp2 HG02970.hp1 HG02976.hp2 HG03098.hp2 HG03710.hp1 HG04115.hp2 HG04204.hp1	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0006 a0002c0003 a0002c0034 others(1): Show a0001c0006 a0002c0003 a0002c0034 a0008c0036	a0001c0006t0008 a0002c0003t0008 a0002c0034t0008 others(1): Show a0001c0006t0008 a0002c0003t0008 a0002c0034t0008 a0008c0036t0008	a0001c0006t0008g0303 a0002c0003t0008g0221 a0002c0003t0008g0222 others(6): Show a0001c0006t0008g0303 a0002c0003t0008g0221 a0002c0003t0008g0222 a0002c0003t0008g0223 a0002c0003t0008g0224 a0002c0003t0008g0226 a0002c0003t0008g0227 a0002c0034t0008g0046 a0008c0036t0008g0225	9	372	0.0242	-18	c.999 others(33): Show c.999+125_999+142delACACACACACACACACAC	COL6A2	ENSG00000142173.17	transcript	ENST00000397763.6	protein_coding	10/27		INFO_REALIGN_3_PRIME	chr21	TogoVar
COL6A2_chr21_46093112_46134801	46134701	GAGGGTCA others(11): Show GAGGGTCAGGGTCAGGGTC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01123.hp2 others(3): Show HG01069.hp1 HG01071.hp2 HG01123.hp2 HG01257.hp1 HG01258.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0009 a0001c0001 a0001c0005 a0001c0009	a0001c0001t0001 a0001c0005t0001 a0001c0009t0001 a0001c0001t0001 a0001c0005t0001 a0001c0009t0001	a0001c0001t0001g0131 a0001c0001t0001g0144 a0001c0001t0001g0179 others(3): Show a0001c0001t0001g0131 a0001c0001t0001g0144 a0001c0001t0001g0179 a0001c0005t0001g0005 a0001c0009t0001g0106 a0001c0009t0001g0115	6	372	0.0161	-18	c.52 others(29): Show c.5211_*5228delAGGGTCAGGGTCAGGGTC	COL6A2	ENSG00000142173.17	transcript	ENST00000397763.6	protein_coding		4901		chr21	TogoVar
COL6A2_chr21_46093112_46137848	46116926	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02055.hp2 HG02083.hp2 others(6): Show HG00639.hp2 HG02055.hp2 HG02083.hp2 HG02970.hp1 HG02976.hp2 HG03098.hp2 HG03710.hp1 HG04115.hp2 HG04204.hp1	a0001 a0002 a0013 a0001 a0002 a0013	a0001c0007 a0002c0003 a0002c0013 others(3): Show a0001c0007 a0002c0003 a0002c0013 a0002c0031 a0002c0055 a0013c0057	a0001c0007t0001 a0002c0003t0001 a0002c0013t0001 others(3): Show a0001c0007t0001 a0002c0003t0001 a0002c0013t0001 a0002c0031t0001 a0002c0055t0001 a0013c0057t0001	a0001c0007t0001g0302 a0002c0003t0001g0222 a0002c0003t0001g0223 others(6): Show a0001c0007t0001g0302 a0002c0003t0001g0222 a0002c0003t0001g0223 a0002c0013t0001g0217 a0002c0013t0001g0219 a0002c0031t0001g0218 a0002c0031t0001g0220 a0002c0055t0001g0048 a0013c0057t0001g0221	9	364	0.0247	-18	c.999 others(33): Show c.999+125_999+142delACACACACACACACACAC	COL6A2	ENSG00000142173.17	transcript	ENST00000300527.9	protein_coding	10/27		INFO_REALIGN_3_PRIME	chr21	TogoVar
COL6A2_chr21_46093112_46137848	46134701	GAGGGTCA others(11): Show GAGGGTCAGGGTCAGGGTC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01123.hp2 others(3): Show HG01069.hp1 HG01071.hp2 HG01123.hp2 HG01257.hp1 HG01258.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0011 others(1): Show a0001c0001 a0001c0004 a0001c0011 a0001c0021	a0001c0001t0006 a0001c0004t0001 a0001c0011t0001 others(1): Show a0001c0001t0006 a0001c0004t0001 a0001c0011t0001 a0001c0021t0006	a0001c0001t0006g0132 a0001c0004t0001g0007 a0001c0011t0001g0106 others(3): Show a0001c0001t0006g0132 a0001c0004t0001g0007 a0001c0011t0001g0106 a0001c0011t0001g0115 a0001c0021t0006g0145 a0001c0021t0006g0176	6	364	0.0165	-18	c.21 others(29): Show c.2150_*2167delAGGGTCAGGGTCAGGGTC	COL6A2	ENSG00000142173.17	transcript	ENST00000300527.9	protein_coding		1854		chr21	TogoVar
COL6A3_chr2_237319018_237419164	237415349	AGAGAAAA others(11): Show AGAGAAAAAAGAAAAAAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp1 HG02897.hp2 HG02896.hp1 HG02897.hp2	a0010 a0010	a0010c0018 a0010c0018	a0010c0018t0003 a0010c0018t0003	a0010c0018t0003g0105 a0010c0018t0003g0106 a0010c0018t0003g0105 a0010c0018t0003g0106	2	322	0.0062	-18	c.-14 others(29): Show c.-1445_-1428delCTTTTTTTCTTTTTTCTC	COL6A3	ENSG00000163359.17	transcript	ENST00000295550.9	protein_coding		1186		chr2	TogoVar
COL6A5_chr3_130340672_130489846	130439339	TTGTGTGT others(11): Show TTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG03491.hp1 HG03492.hp1 HG01256.hp1 HG03491.hp1 HG03492.hp1	a0007 a0007	a0007c0008 a0007c0081 a0007c0008 a0007c0081	a0007c0008t0003 a0007c0081t0002 a0007c0008t0003 a0007c0081t0002	a0007c0008t0003g0001 a0007c0081t0002g0262 a0007c0008t0003g0001 a0007c0081t0002g0262	3	292	0.0103	-18	c.573 others(35): Show c.5734-160_5734-143delTGTGTGTGTGTGTGTGTG	COL6A5	ENSG00000172752.16	transcript	ENST00000373157.9	protein_coding	33/40		INFO_REALIGN_3_PRIME	chr3	TogoVar
COL6A6_chr3_130512177_130682042	130590291	ATATATAT others(11): Show ATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0038 a0038	a0038c0065 a0038c0065	a0038c0065t0002 a0038c0065t0002	a0038c0065t0002g0203 a0038c0065t0002g0203	1	264	0.0038	-18	c.421 others(35): Show c.4219-748_4219-731delATATATATTTTTTTTTTT	COL6A6	ENSG00000206384.11	transcript	ENST00000358511.11	protein_coding	12/36		INFO_REALIGN_3_PRIME	chr3	TogoVar
COL6A6_chr3_130512177_130682042	130590293	ATATATAT others(11): Show ATATATATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0011 a0011	a0011c0008 a0011c0008	a0011c0008t0002 a0011c0008t0002	a0011c0008t0002g0049 a0011c0008t0002g0049	1	264	0.0038	-18	c.421 others(35): Show c.4219-746_4219-729delATATATTTTTTTTTTTTT	COL6A6	ENSG00000206384.11	transcript	ENST00000358511.11	protein_coding	12/36		INFO_REALIGN_3_PRIME	chr3	TogoVar
COL6A6_chr3_130512177_130682042	130590297	ATATTTTT others(11): Show ATATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG02129.hp2 NA18995.hp1 others(1): Show HG01071.hp2 HG02129.hp2 NA18995.hp1 NA18998.hp1	a0004 a0005 a0040 a0004 a0005 a0040	a0004c0004 a0005c0003 a0040c0066 a0004c0004 a0005c0003 a0040c0066	a0004c0004t0009 a0004c0004t0010 a0005c0003t0001 others(1): Show a0004c0004t0009 a0004c0004t0010 a0005c0003t0001 a0040c0066t0003	a0004c0004t0009g0247 a0004c0004t0010g0248 a0005c0003t0001g0152 others(1): Show a0004c0004t0009g0247 a0004c0004t0010g0248 a0005c0003t0001g0152 a0040c0066t0003g0175	4	264	0.0152	-18	c.421 others(35): Show c.4219-742_4219-725delATTTTTTTTTTTTTTTTT	COL6A6	ENSG00000206384.11	transcript	ENST00000358511.11	protein_coding	12/36		INFO_REALIGN_3_PRIME	chr3	TogoVar

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