JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CSNK1A1_chr5_149487982_149556439	149542622	ATATATAT others(11): Show ATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0141 a0001c0001t0003g0141	1	390	0.0026	-18	c.230 others(35): Show c.230+7435_230+7452delCATATATATATATATATA	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1G1_chr15_64160525_64361173	64278410	GTGTGTGT others(11): Show GTGTGTGTGTATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0139 a0001c0001t0008g0139	1	176	0.0057	-18	c.182 others(37): Show c.182-19187_182-19170delTATATATATACACACACA	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	2/11			chr15	TogoVar
CSNK1G3_chr5_123507177_123622049	123620355	GAGTTTTA others(11): Show GAGTTTTATAGCCATCACT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0051 a0001c0001t0002g0051	1	294	0.0034	-18	c.59 others(29): Show c.5960_*5977delAGTTTTATAGCCATCACT	CSNK1G3	ENSG00000151292.19	transcript	ENST00000696905.1	protein_coding		3307		chr5	TogoVar
CSNK2A1_chr20_467498_548790	485097	AAAAAAAA others(11): Show AAAAAAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03579.hp1 NA19240.hp2 HG03453.hp2 HG03579.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0065 a0001c0001t0029 a0001c0001t0065	a0001c0001t0029g0120 a0001c0001t0029g0132 a0001c0001t0065g0119 a0001c0001t0029g0120 a0001c0001t0029g0132 a0001c0001t0065g0119	3	316	0.0095	-18	c.106 others(37): Show c.1061-1039_1061-1022delATATATTTTTTTTTTTTT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNK2A2_chr16_58152907_58203106	58155748	GGTGTGTG others(11): Show GGTGTGTGTGTGTGTGTGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 HG01884.hp2 HG02970.hp2 others(1): Show HG00642.hp2 HG01884.hp2 HG02970.hp2 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0022 a0001c0001t0001g0173 a0001c0001t0005g0335 others(1): Show a0001c0001t0001g0022 a0001c0001t0001g0173 a0001c0001t0005g0335 a0001c0001t0005g0336	4	400	0.0100	-18	c.26 others(29): Show c.2605_*2622delACACACACACACACACAC	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding		2158		chr16	TogoVar
CSNK2A2_chr16_58152907_58203106	58159195	GAAGAAAG others(11): Show GAAGAAAGCACACTAATTA	G G	intron_variant intron_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	400	0.0025	-18	c.18 others(33): Show c.18-860_*18-843delTAATTAGTGTGCTTTCTT	CSNK2A2	ENSG00000070770.10	transcript	ENST00000262506.8	protein_coding	11/11			chr16	TogoVar
CSNKA2IP_chr3_88333456_88472594	88435886	ATATAATG others(11): Show ATATAATGCACATTATGTG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00408.hp1 HG00544.hp2 others(98): Show HG00280.hp1 HG00408.hp1 HG00544.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp1 HG00642.hp2 HG00741.hp2 HG01106.hp2 HG01123.hp1 HG01167.hp2 HG01168.hp1 HG01175.hp2 HG01256.hp1 HG01261.hp2 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp1 HG01891.hp2 HG01943.hp1 HG01993.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp2 HG02300.hp1 HG02602.hp1 HG02630.hp1 HG02647.hp1 HG02683.hp1 HG02738.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG03098.hp1 HG03490.hp2 HG03492.hp2 HG03540.hp1 HG03654.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp2 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp2 HG03942.hp2 HG04228.hp1 HG06807.hp2 NA18522.hp1 NA18747.hp2 NA18951.hp1 NA18952.hp2 NA18953.hp2 NA18959.hp2 NA18960.hp1 NA18962.hp2 NA18965.hp2 NA18966.hp2 NA18970.hp1 NA18971.hp1 NA18975.hp1 NA18979.hp2 NA18980.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp2 NA18986.hp2 NA18987.hp2 NA18988.hp1 NA18990.hp2 NA18991.hp2 NA19000.hp1 NA19003.hp2 NA19011.hp1 NA19043.hp2 NA19056.hp2 NA19060.hp2 NA19063.hp2 NA19068.hp1 NA19070.hp2 NA19075.hp1 NA19081.hp2 NA19084.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20752.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0005 a0011 a0013 a0020 a0021	a0001c0001 a0001c0004 a0002c0006 others(6): Show a0001c0001 a0001c0004 a0002c0006 a0003c0003 a0005c0007 a0011c0013 a0013c0027 a0020c0018 a0021c0021	a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 a0002c0006t0001 a0002c0006t0002 a0003c0003t0002 a0005c0007t0002 a0011c0013t0002 a0013c0027t0001 a0020c0018t0002 a0021c0021t0002	a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 others(98): Show a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0117 a0001c0001t0001g0134 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0173 a0001c0001t0001g0181 a0001c0001t0001g0183 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0205 a0001c0001t0002g0251 a0001c0001t0002g0262 a0001c0001t0002g0268 a0001c0001t0002g0269 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0286 a0001c0001t0002g0287 a0001c0001t0002g0294 a0001c0001t0002g0295 a0001c0001t0002g0298 a0001c0001t0002g0299 a0001c0001t0002g0301 a0001c0001t0002g0302 a0001c0001t0002g0303 a0001c0001t0002g0304 a0001c0001t0002g0305 a0001c0001t0002g0307 a0001c0001t0002g0308 a0001c0001t0002g0309 a0001c0001t0002g0310 a0001c0001t0002g0311 a0001c0001t0002g0312 a0001c0001t0002g0316 a0001c0001t0002g0318 a0001c0001t0002g0319 a0001c0001t0002g0323 a0001c0001t0002g0328 a0001c0001t0002g0331 a0001c0001t0002g0333 a0001c0001t0002g0336 a0001c0001t0002g0338 a0001c0001t0002g0339 a0001c0001t0002g0340 a0001c0001t0002g0342 a0001c0001t0002g0343 a0001c0001t0002g0345 a0001c0001t0002g0346 a0001c0001t0002g0348 a0001c0001t0002g0350 a0001c0001t0002g0351 a0001c0001t0002g0352 a0001c0001t0002g0353 a0001c0001t0002g0355 a0001c0001t0002g0356 a0001c0001t0002g0357 a0001c0001t0002g0358 a0001c0001t0002g0359 a0001c0001t0002g0360 a0001c0001t0002g0361 a0001c0001t0002g0362 a0001c0001t0002g0363 a0001c0001t0002g0364 a0001c0001t0002g0365 a0001c0001t0002g0367 a0001c0001t0002g0368 a0001c0001t0002g0369 a0001c0001t0002g0370 a0001c0001t0002g0374 a0001c0001t0002g0376 a0001c0001t0002g0382 a0001c0004t0002g0380 a0001c0004t0002g0381 a0002c0006t0001g0003 a0002c0006t0001g0028 a0002c0006t0001g0128 a0002c0006t0001g0133 a0002c0006t0001g0139 a0002c0006t0001g0176 a0002c0006t0001g0246 a0002c0006t0002g0377 a0002c0006t0002g0378 a0002c0006t0002g0379 a0003c0003t0002g0341 a0005c0007t0002g0288 a0005c0007t0002g0306 a0005c0007t0002g0320 a0005c0007t0002g0322 a0005c0007t0002g0324 a0005c0007t0002g0325 a0005c0007t0002g0335 a0011c0013t0002g0279 a0011c0013t0002g0334 a0013c0027t0001g0132 a0020c0018t0002g0344 a0021c0021t0002g0292	101	386	0.2617	-18	c.-27 others(39): Show c.-270-29200_-270-29183delATAATGCACATTATGTGT	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88446034	CTTTCTTT others(11): Show CTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0042 a0002c0002t0001g0042	1	386	0.0026	-18	c.-27 others(39): Show c.-270-19052_-270-19035delTTCTTTCTTTCTTTCTTT	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88449840	CACACACA others(11): Show CACACACACACACACATAT	C C	intron_variant intron_variant	MODIFIER	NA19078.hp2 NA19079.hp2 NA19078.hp2 NA19079.hp2	a0007 a0007	a0007c0010 a0007c0010	a0007c0010t0002 a0007c0010t0002	a0007c0010t0002g0296 a0007c0010t0002g0300 a0007c0010t0002g0296 a0007c0010t0002g0300	2	386	0.0052	-18	c.-27 others(39): Show c.-270-15246_-270-15229delCACACACACACACATATA	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88470723	TATATATA others(11): Show TATATATATACATACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp1 HG02738.hp1 HG02738.hp2 others(2): Show HG00408.hp1 HG02738.hp1 HG02738.hp2 HG03688.hp2 NA18959.hp2	a0001 a0021 a0001 a0021	a0001c0001 a0021c0021 a0001c0001 a0021c0021	a0001c0001t0001 a0001c0001t0002 a0021c0021t0002 a0001c0001t0001 a0001c0001t0002 a0021c0021t0002	a0001c0001t0001g0183 a0001c0001t0002g0303 a0001c0001t0002g0312 others(2): Show a0001c0001t0001g0183 a0001c0001t0002g0303 a0001c0001t0002g0312 a0001c0001t0002g0360 a0021c0021t0002g0292	5	386	0.0130	-18	c.31 others(29): Show c.3162_*3179delATATATATACATACACAC	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding		3130		chr3	TogoVar
CSNKA2IP_chr3_88333456_88472594	88470725	TATATATA others(11): Show TATATATACATACACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp2 HG02040.hp2 NA18975.hp2 HG01255.hp2 HG02040.hp2 NA18975.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0001 a0001c0004t0002	a0001c0001t0001g0113 a0001c0004t0001g0223 a0001c0004t0002g0314 a0001c0001t0001g0113 a0001c0004t0001g0223 a0001c0004t0002g0314	3	386	0.0078	-18	c.31 others(29): Show c.3164_*3181delATATATACATACACACAC	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding		3132		chr3	TogoVar
CSPP1_chr8_67059392_67201614	67159866	TTCTTTCT others(11): Show TTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0081	1	158	0.0063	-18	c.253 others(35): Show c.2538+731_2538+748delCTTTCTTTCTTTCTTTCT	CSPP1	ENSG00000104218.16	transcript	ENST00000678616.1	protein_coding	21/30		INFO_REALIGN_3_PRIME	chr8	TogoVar
CSRNP3_chr2_165464698_165694407	165500392	TGTATACA others(11): Show TGTATACATATATGTATAC	T T	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0121 a0001c0001t0053g0121	1	246	0.0041	-18	c.-11 others(37): Show c.-113+5465_-113+5482delGTATACATATATGTATAC	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	2/6			chr2	TogoVar
CSRNP3_chr2_165464698_165694407	165674681	AATATATA others(11): Show AATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02630.hp1 HG03688.hp2 HG00741.hp1 HG02630.hp1 HG03688.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0006 a0002c0003t0005 a0002c0003t0010 a0001c0002t0006 a0002c0003t0005 a0002c0003t0010	a0001c0002t0006g0080 a0002c0003t0005g0108 a0002c0003t0010g0140 a0001c0002t0006g0080 a0002c0003t0005g0108 a0002c0003t0010g0140	3	246	0.0122	-18	c.409 others(35): Show c.409-1615_409-1598delTATATATATATATATATA	CSRNP3	ENSG00000178662.16	transcript	ENST00000651982.1	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
CSRP2_chr12_76853709_76884019	76869529	AACACACA others(11): Show AACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02615.hp1 HG02818.hp1 others(2): Show HG01109.hp1 HG02615.hp1 HG02818.hp1 HG03139.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0189 a0001c0001t0001g0266 others(2): Show a0001c0001t0001g0165 a0001c0001t0001g0189 a0001c0001t0001g0266 a0001c0001t0001g0316 a0001c0001t0001g0346	5	388	0.0129	-18	c.-1- others(33): Show c.-1-3286_-1-3269delGTGTGTGTGTGTGTGTGT	CSRP2	ENSG00000175183.10	transcript	ENST00000311083.10	protein_coding	1/5			chr12	TogoVar
CST5_chr20_23870934_23884748	23873779	TCTGAGGA others(11): Show TCTGAGGAGATAGGAGGAG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp1 HG00408.hp1 HG00544.hp1 others(118): Show HG00140.hp1 HG00408.hp1 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00597.hp2 HG00621.hp1 HG00621.hp2 HG00673.hp1 HG00673.hp2 HG00741.hp1 HG01070.hp1 HG01109.hp1 HG01192.hp1 HG01192.hp2 HG01256.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp2 HG01361.hp1 HG01433.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01978.hp2 HG01993.hp2 HG02004.hp1 HG02027.hp1 HG02040.hp2 HG02055.hp1 HG02056.hp2 HG02074.hp1 HG02080.hp1 HG02132.hp1 HG02148.hp1 HG02273.hp2 HG02293.hp2 HG02300.hp1 HG02572.hp2 HG02630.hp2 HG02683.hp1 HG02698.hp2 HG03209.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp2 HG03491.hp1 HG03654.hp1 HG03654.hp2 HG03704.hp2 HG03831.hp2 HG03834.hp2 NA18612.hp1 NA18612.hp2 NA18942.hp1 NA18944.hp1 NA18944.hp2 NA18945.hp1 NA18946.hp2 NA18948.hp1 NA18948.hp2 NA18952.hp2 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18960.hp2 NA18961.hp2 NA18962.hp2 NA18965.hp1 NA18965.hp2 NA18967.hp1 NA18967.hp2 NA18968.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18975.hp1 NA18980.hp1 NA18982.hp2 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18987.hp1 NA18987.hp2 NA18989.hp2 NA18992.hp2 NA18993.hp2 NA18994.hp1 NA18995.hp1 NA18998.hp1 NA18999.hp2 NA19000.hp2 NA19009.hp1 NA19010.hp1 NA19012.hp2 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19063.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19067.hp2 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19077.hp1 NA19078.hp1 NA19081.hp1 NA19081.hp2 NA19085.hp1 NA19087.hp1 NA19240.hp2 NA21309.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0001c0004 a0002c0002 others(1): Show a0001c0001 a0001c0004 a0002c0002 a0006c0006	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0002c0002t0001 a0002c0002t0002 a0006c0006t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0008 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0033 a0001c0001t0001g0040 a0001c0001t0002g0030 a0001c0004t0001g0029 a0002c0002t0001g0017 a0002c0002t0002g0001 a0006c0006t0001g0044	121	446	0.2713	-18	c.23 others(29): Show c.2391_*2408delCTCCTCCTATCTCCTCAG	CST5	ENSG00000170367.5	transcript	ENST00000304710.5	protein_coding		2154		chr20	TogoVar
CSTF1_chr20_56387645_56411362	56400156	AAGGGACT others(11): Show AAGGGACTGGATTGTGTTT	A A	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	422	0.0024	-18	c.103 others(35): Show c.1036+801_1036+818delGGGACTGGATTGTGTTTA	CSTF1	ENSG00000101138.12	transcript	ENST00000217109.9	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr20	TogoVar
CSTF3_chr11_33079584_33166480	33163876	AATATATA others(11): Show AATATATATATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0307 a0001c0001t0001g0307	1	360	0.0028	-18	c.-25 others(29): Show c.-2569_-2552delATATATATATATATATAT	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2397		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163909	ATATATAT others(11): Show ATATATATATATATATATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0271 a0001c0001t0001g0271	1	360	0.0028	-18	c.-26 others(29): Show c.-2602_-2585delAATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2430		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163913	ATATATAT others(11): Show ATATATATATATATTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp1 NA18962.hp2 NA18522.hp1 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0274 a0001c0001t0001g0320 a0001c0001t0001g0274 a0001c0001t0001g0320	2	360	0.0056	-18	c.-26 others(29): Show c.-2606_-2589delAAAAAATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2434		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163923	ATATTTTT others(11): Show ATATTTTTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp1 HG03688.hp1 HG03453.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0296 a0001c0001t0002g0062 a0001c0001t0001g0296 a0001c0001t0002g0062	2	360	0.0056	-18	c.-26 others(29): Show c.-2616_-2599delAAAAAAAAAAAAAAAATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2444		chr11	TogoVar
CT45A2_chrX_135806668_135825012	135821171	GAGAGAAA others(11): Show GAGAGAAAGAAAGAAAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	22	0.0455	-18	c.-14 others(29): Show c.-1422_-1405delTTCTTTCTTTCTTTCTCT	CT45A2	ENSG00000271449.8	transcript	ENST00000612907.2	protein_coding		1160		chrX	TogoVar
CT47C1_chrX_119067993_119081765	119072522	ACAAAGTG others(11): Show ACAAAGTGAGACTCTGTCT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01099.hp1 HG01167.hp1 HG02896.hp2 others(1): Show HG01099.hp1 HG01167.hp1 HG02896.hp2 NA19240.hp1	a0005 a0008 a0005 a0008	a0005c0006 a0008c0011 a0005c0006 a0008c0011	a0005c0006t0004 a0008c0011t0004 a0005c0006t0004 a0008c0011t0004	a0005c0006t0004g0006 a0008c0011t0004g0006 a0005c0006t0004g0006 a0008c0011t0004g0006	4	310	0.0129	-18	c.-70 others(27): Show c.-703_-686delCAAAGTGAGACTCTGTCT	CT47C1	ENSG00000277535.4	transcript	ENST00000620151.4	protein_coding		470		chrX	TogoVar
CTCFL_chr20_57492166_57530140	57494195	GTGTGTGT others(11): Show GTGTGTGTGTGTGTGTATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0132 a0001c0001t0005g0132	1	424	0.0024	-18	c.43 others(29): Show c.4337_*4354delTATACACACACACACACA	CTCFL	ENSG00000124092.13	transcript	ENST00000243914.8	protein_coding		2970		chr20	TogoVar
CTCFL_chr20_57492166_57530140	57494197	GTGTGTGT others(11): Show GTGTGTGTGTGTGTATATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0126 a0003c0003t0001g0126	1	424	0.0024	-18	c.43 others(29): Show c.4335_*4352delTATATACACACACACACA	CTCFL	ENSG00000124092.13	transcript	ENST00000243914.8	protein_coding		2968		chr20	TogoVar
CTCF_chr16_67557526_67644177	67604734	TTTTTTTT others(11): Show TTTTTTTTTTTGTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0143 a0001c0001t0003g0143	1	168	0.0060	-18	c.-9- others(33): Show c.-9-6079_-9-6062delGTTTTTTGTTTTTTTTTT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTCF_chr16_67557526_67644177	67629746	CTTTTTTT others(11): Show CTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0144 a0001c0001t0002g0144	1	168	0.0060	-18	c.183 others(35): Show c.1837+242_1837+259delTTTTTTTTTTTTTTTTTT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTDP1_chr18_79674803_79759503	79701516	AATAATAA others(11): Show AATAATAAATAAATTAAAT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02615.hp1 HG02723.hp2 HG01106.hp1 HG02615.hp1 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0021 a0001c0001 a0001c0021	a0001c0001t0007 a0001c0021t0007 a0001c0001t0007 a0001c0021t0007	a0001c0001t0007g0342 a0001c0001t0007g0343 a0001c0021t0007g0341 a0001c0001t0007g0342 a0001c0001t0007g0343 a0001c0021t0007g0341	3	378	0.0079	-18	c.622 others(35): Show c.622-3249_622-3232delTAATAAATAAATTAAATA	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDSPL2_chr15_44422629_44534038	44444302	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0091	1	234	0.0043	-18	c.-24 others(37): Show c.-24-14667_-24-14650delCACACACACACACACACA	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTDSPL_chr3_37856880_37989469	37983282	AATATCTA others(11): Show AATATCTATATCTATATCT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02698.hp1 HG03239.hp2 HG02698.hp1 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0056 a0001c0001t0015g0057 a0001c0001t0015g0056 a0001c0001t0015g0057	2	166	0.0121	-18	c.24 others(29): Show c.2432_*2449delCTATATCTATATCTATAT	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding	8/8	2432	INFO_REALIGN_3_PRIME	chr3	TogoVar
CTIF_chr18_48534031_48868217	48669793	TTATATAT others(11): Show TTATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02965.hp2 HG03098.hp2 others(1): Show HG02055.hp2 HG02965.hp2 HG03098.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0022 a0001c0001t0035 a0001c0001t0036 others(1): Show a0001c0001t0022 a0001c0001t0035 a0001c0001t0036 a0001c0002t0042	a0001c0001t0022g0056 a0001c0001t0035g0058 a0001c0001t0036g0069 others(1): Show a0001c0001t0022g0056 a0001c0001t0035g0058 a0001c0001t0036g0069 a0001c0002t0042g0050	4	144	0.0278	-18	c.432 others(33): Show c.432-845_432-828delTATATATATATATATATA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730397	AGGGGCTT others(11): Show AGGGGCTTCCACGGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG03490.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0119 a0001c0001t0048g0119	1	144	0.0069	-18	c.584 others(37): Show c.584+18708_584+18725delTTCCACGGTGTGTGGGGC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730406	CACGGTGT others(11): Show CACGGTGTGTGGGGCCCCT	C C	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0093 a0001c0001t0010g0093	1	144	0.0069	-18	c.584 others(37): Show c.584+18712_584+18729delACGGTGTGTGGGGCCCCT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11			chr18	TogoVar
CTIF_chr18_48534031_48868217	48730478	CGCGGTGT others(11): Show CGCGGTGTGAGGGGCTTCT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0060 a0001c0001t0006g0060	1	144	0.0069	-18	c.584 others(37): Show c.584+18816_584+18833delTTCTGCGGTGTGAGGGGC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730570	CGGTGTGA others(11): Show CGGTGTGAGGGGCCCCTGT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG03654.hp1 HG01081.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0045 a0001c0001t0002 a0001c0002t0045	a0001c0001t0002g0068 a0001c0002t0045g0002 a0001c0001t0002g0068 a0001c0002t0045g0002	2	144	0.0139	-18	c.584 others(37): Show c.584+18888_584+18905delCCCTGTGGTGTGAGGGGC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730624	CGGTGTGA others(11): Show CGGTGTGAGGGGCCCCTGT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02109.hp2 HG02257.hp2 others(11): Show HG01243.hp1 HG02109.hp2 HG02257.hp2 HG02258.hp1 HG02559.hp1 HG02615.hp2 HG02818.hp1 HG02895.hp2 HG02965.hp2 HG03195.hp1 HG03225.hp1 HG03540.hp2 HG03579.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0019 a0001c0001t0023 a0001c0001t0025 a0001c0001t0032 a0001c0001t0035 a0001c0001t0040 a0001c0001t0051 a0001c0002t0003 a0001c0009t0041	a0001c0001t0001g0032 a0001c0001t0002g0137 a0001c0001t0003g0118 others(11): Show a0001c0001t0001g0032 a0001c0001t0002g0137 a0001c0001t0003g0118 a0001c0001t0004g0082 a0001c0001t0008g0139 a0001c0001t0019g0132 a0001c0001t0023g0051 a0001c0001t0025g0011 a0001c0001t0032g0033 a0001c0001t0035g0058 a0001c0001t0040g0073 a0001c0001t0051g0005 a0001c0002t0003g0128 a0001c0009t0041g0131	14	144	0.0972	-18	c.584 others(37): Show c.584+18942_584+18959delCCCTGTGGTGTGAGGGGC	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730694	TGAGGTGT others(11): Show TGAGGTGTGAGGGGCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01109.hp1 HG01109.hp2 others(58): Show HG01069.hp1 HG01109.hp1 HG01109.hp2 HG01243.hp1 HG01261.hp2 HG01346.hp1 HG01884.hp2 HG01952.hp1 HG02080.hp1 HG02080.hp2 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02647.hp2 HG02698.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02895.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp1 HG03453.hp2 HG03490.hp2 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG04115.hp1 HG06807.hp2 NA18945.hp1 NA19011.hp1 NA19030.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0005 a0006	a0001c0001 a0001c0002 a0001c0009 others(4): Show a0001c0001 a0001c0002 a0001c0009 a0002c0004 a0004c0008 a0005c0010 a0006c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(34): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0018 a0001c0001t0019 a0001c0001t0023 a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0032 a0001c0001t0035 a0001c0001t0037 a0001c0001t0038 a0001c0001t0040 a0001c0001t0044 a0001c0001t0046 a0001c0001t0047 a0001c0001t0051 a0001c0001t0052 a0001c0002t0001 a0001c0002t0003 a0001c0002t0042 a0001c0002t0049 a0001c0009t0041 a0002c0004t0014 a0002c0004t0024 a0004c0008t0006 a0005c0010t0001 a0006c0006t0001	a0001c0001t0001g0032 a0001c0001t0001g0036 a0001c0001t0001g0066 others(58): Show a0001c0001t0001g0032 a0001c0001t0001g0036 a0001c0001t0001g0066 a0001c0001t0001g0071 a0001c0001t0001g0081 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0096 a0001c0001t0001g0105 a0001c0001t0001g0129 a0001c0001t0002g0025 a0001c0001t0002g0102 a0001c0001t0002g0137 a0001c0001t0003g0004 a0001c0001t0003g0030 a0001c0001t0003g0064 a0001c0001t0003g0118 a0001c0001t0004g0024 a0001c0001t0004g0055 a0001c0001t0004g0082 a0001c0001t0004g0084 a0001c0001t0004g0134 a0001c0001t0005g0109 a0001c0001t0006g0001 a0001c0001t0006g0060 a0001c0001t0008g0023 a0001c0001t0008g0139 a0001c0001t0008g0142 a0001c0001t0009g0076 a0001c0001t0011g0143 a0001c0001t0012g0090 a0001c0001t0012g0091 a0001c0001t0013g0127 a0001c0001t0018g0065 a0001c0001t0019g0132 a0001c0001t0019g0138 a0001c0001t0023g0048 a0001c0001t0023g0051 a0001c0001t0024g0107 a0001c0001t0025g0011 a0001c0001t0026g0061 a0001c0001t0032g0033 a0001c0001t0035g0058 a0001c0001t0037g0039 a0001c0001t0038g0136 a0001c0001t0040g0073 a0001c0001t0044g0144 a0001c0001t0046g0140 a0001c0001t0047g0031 a0001c0001t0051g0005 a0001c0001t0052g0126 a0001c0002t0001g0106 a0001c0002t0003g0128 a0001c0002t0042g0050 a0001c0002t0049g0072 a0001c0009t0041g0131 a0002c0004t0014g0114 a0002c0004t0024g0113 a0004c0008t0006g0045 a0005c0010t0001g0111 a0006c0006t0001g0099	61	144	0.4236	-18	c.584 others(37): Show c.584+19001_584+19018delAGGTGTGAGGGGCTTCCG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730696	AGGTGTGA others(11): Show AGGTGTGAGGGGCTTCCGC	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02135.hp2 HG02451.hp2 others(3): Show HG00642.hp2 HG02135.hp2 HG02451.hp2 HG02970.hp2 HG03486.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 a0001c0001t0018 a0001c0001t0021 a0001c0005t0001	a0001c0001t0001g0077 a0001c0001t0005g0104 a0001c0001t0011g0115 others(3): Show a0001c0001t0001g0077 a0001c0001t0005g0104 a0001c0001t0011g0115 a0001c0001t0018g0019 a0001c0001t0021g0047 a0001c0005t0001g0079	6	144	0.0417	-18	c.584 others(37): Show c.584+19019_584+19036delCGGTGTGAGGGGCTTCCG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48730714	CGGTGTGA others(11): Show CGGTGTGAGGGGCTTCCGT	C C	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA19043.hp2 NA18906.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0043 a0001c0001t0002 a0001c0001t0043	a0001c0001t0002g0042 a0001c0001t0043g0053 a0001c0001t0002g0042 a0001c0001t0043g0053	2	144	0.0139	-18	c.584 others(37): Show c.584+19029_584+19046delGGCTTCCGTGGTGTGAGG	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48867822	AAATAATA others(11): Show AAATAATAATAATAATAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01081.hp1 HG02135.hp2 HG02486.hp2 others(12): Show HG01081.hp1 HG02135.hp2 HG02486.hp2 HG02698.hp2 HG02717.hp1 HG02738.hp1 HG02809.hp2 HG03195.hp2 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03710.hp2 NA18945.hp2 NA18952.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0010 a0001c0001t0012 others(6): Show a0001c0001t0005 a0001c0001t0010 a0001c0001t0012 a0001c0001t0015 a0001c0001t0021 a0001c0001t0022 a0001c0001t0048 a0001c0001t0054 a0001c0002t0045	a0001c0001t0005g0006 a0001c0001t0005g0067 a0001c0001t0005g0104 others(12): Show a0001c0001t0005g0006 a0001c0001t0005g0067 a0001c0001t0005g0104 a0001c0001t0005g0109 a0001c0001t0010g0078 a0001c0001t0010g0093 a0001c0001t0012g0090 a0001c0001t0012g0091 a0001c0001t0015g0083 a0001c0001t0015g0135 a0001c0001t0021g0047 a0001c0001t0022g0056 a0001c0001t0048g0119 a0001c0001t0054g0094 a0001c0002t0045g0002	15	144	0.1042	-18	c.82 others(29): Show c.8264_*8281delAATAATAATAATAATAAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding		4606		chr18	TogoVar
CTLA4_chr2_203862771_203878965	203873327	CATATATA others(11): Show CATATATATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02145.hp2 HG02895.hp2 HG02145.hp2 HG02895.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0021 a0002c0002t0021	a0002c0002t0021g0001 a0002c0002t0021g0001	2	420	0.0048	-18	c.55 others(27): Show c.554_*571delATATATATATATATATAT	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding	4/4	554	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(11): Show GTATATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0059 a0001c0004t0001g0059	1	68	0.0147	-18	c.-42 others(29): Show c.-4257_-4240delTATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79508996	TATATATA others(11): Show TATATATATATATATATAA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0063 a0001c0005t0002g0063	1	68	0.0147	-18	c.-42 others(29): Show c.-4216_-4199delATATATATATATATATAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4054		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79521107	GATATATA others(11): Show GATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG03130.hp1 HG01106.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0057 a0001c0002t0001g0007 a0001c0001t0002g0057 a0001c0002t0001g0007	2	68	0.0294	-18	c.-6+ others(33): Show c.-6+7944_-6+7961delTATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79531195	CATATATA others(11): Show CATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0017 a0001c0003t0005g0017	1	68	0.0147	-18	c.-6+ others(35): Show c.-6+18012_-6+18029delTATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79626619	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0057	1	68	0.0147	-18	c.-5- others(35): Show c.-5-24913_-5-24896delGTGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79777327	ATGTGTGT others(11): Show ATGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01884.hp1 HG02109.hp2 others(6): Show HG01167.hp2 HG01884.hp1 HG02109.hp2 HG02809.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp2 HG03688.hp1 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0006	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0003t0001 a0001c0003t0002 a0001c0004t0001 a0002c0006t0001	a0001c0001t0001g0012 a0001c0001t0001g0053 a0001c0001t0001g0054 others(6): Show a0001c0001t0001g0012 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0002g0027 a0001c0002t0001g0004 a0001c0003t0001g0013 a0001c0003t0002g0008 a0001c0004t0001g0021 a0002c0006t0001g0060	9	68	0.1324	-18	c.298 others(37): Show c.298+32777_298+32794delGTGTGTGTGTGTGTGTGT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79829360	TACACACA others(11): Show TACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03225.hp1 HG03453.hp1 HG03130.hp1 HG03225.hp1 HG03453.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0004 a0001c0002t0001g0007 a0001c0002t0001g0023 a0001c0002t0001g0004 a0001c0002t0001g0007 a0001c0002t0001g0023	3	68	0.0441	-18	c.299 others(37): Show c.299-28615_299-28598delCACACACACACACACACA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79893990	TTTCTTCT others(11): Show TTTCTTCTTCTTCTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02630.hp1 HG02647.hp2 HG01884.hp2 HG02630.hp1 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0004g0061 a0001c0001t0001g0028 a0001c0001t0001g0058 a0001c0001t0004g0061	3	68	0.0441	-18	c.853 others(37): Show c.853-15546_853-15529delTTCTTCTTCTTCTTCTTC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	6/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930260	AAGAAAGA others(11): Show AAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG02148.hp2 HG03927.hp2 others(1): Show HG00642.hp1 HG02148.hp2 HG03927.hp2 NA18995.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 a0001c0002 a0001c0003 a0001c0005	a0001c0002t0001 a0001c0003t0001 a0001c0005t0002 a0001c0002t0001 a0001c0003t0001 a0001c0005t0002	a0001c0002t0001g0064 a0001c0003t0001g0018 a0001c0005t0002g0043 others(1): Show a0001c0002t0001g0064 a0001c0003t0001g0018 a0001c0005t0002g0043 a0001c0005t0002g0063	4	68	0.0588	-18	c.105 others(39): Show c.1056+20467_1056+20484delAAGAAAGAAAGAAAGAGA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar

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