Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SYNE1_chr6_152116687_152642362	152188979	AAAAAAAT others(12): Show AAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03225.hp1 HG02258.hp2 HG03225.hp1	a0044 a0109 a0044 a0109	a0044c0101 a0109c0142 a0044c0101 a0109c0142	a0044c0101t0004 a0109c0142t0001 a0044c0101t0004 a0109c0142t0001	a0044c0101t0004g0085 a0109c0142t0001g0114 a0044c0101t0004g0085 a0109c0142t0001g0114	2	174	0.0115	-19	c.233 others(38): Show c.23301+254_23301+272delATATATATATATATTTTTT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	128/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152188985	ATATATAT others(12): Show ATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0051 a0051	a0051c0071 a0051c0071	a0051c0071t0002 a0051c0071t0002	a0051c0071t0002g0015 a0051c0071t0002g0015	1	174	0.0058	-19	c.233 others(38): Show c.23301+248_23301+266delATATATATATATATATATA	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	128/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152253817	GGTTTTTT others(12): Show GGTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02622.hp2 HG02723.hp1 others(4): Show HG02258.hp1 HG02622.hp2 HG02723.hp1 HG03098.hp2 HG03139.hp1 HG03540.hp2 HG06807.hp1	a0037 a0071 a0075 others(4): Show a0037 a0071 a0075 a0080 a0084 a0120 a0126	a0037c0102 a0071c0098 a0075c0099 others(4): Show a0037c0102 a0071c0098 a0075c0099 a0080c0037 a0084c0035 a0120c0117 a0126c0017	a0037c0102t0005 a0071c0098t0004 a0075c0099t0003 others(4): Show a0037c0102t0005 a0071c0098t0004 a0075c0099t0003 a0080c0037t0001 a0084c0035t0002 a0120c0117t0004 a0126c0017t0001	a0037c0102t0005g0094 a0071c0098t0004g0012 a0075c0099t0003g0097 others(4): Show a0037c0102t0005g0094 a0071c0098t0004g0012 a0075c0099t0003g0097 a0080c0037t0001g0119 a0084c0035t0002g0091 a0120c0117t0004g0009 a0126c0017t0001g0098	7	174	0.0402	-19	c.194 others(40): Show c.19470+1044_19470+1062delAAAAAAAAAAAAAAAAAAC	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	104/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152377637	AAAAATAT others(12): Show AAAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18961.hp2 NA18979.hp1 NA18961.hp2 NA18979.hp1	a0077 a0078 a0077 a0078	a0077c0080 a0078c0079 a0077c0080 a0078c0079	a0077c0080t0006 a0078c0079t0007 a0077c0080t0006 a0078c0079t0007	a0077c0080t0006g0131 a0078c0079t0007g0123 a0077c0080t0006g0131 a0078c0079t0007g0123	2	174	0.0115	-19	c.901 others(36): Show c.9010-744_9010-726delATATATATATATATATTTT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	56/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152604993	AAAGAAAG others(12): Show AAAGAAAGAAAGAAAGAGAG	A A	intron_variant intron_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0111 a0111	a0111c0122 a0111c0122	a0111c0122t0007 a0111c0122t0007	a0111c0122t0007g0137 a0111c0122t0007g0137	1	174	0.0058	-19	c.67+ others(36): Show c.67+23253_67+23271delCTCTCTTTCTTTCTTTCTT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	3/145			chr6	TogoVar
SYNE2_chr14_63848004_64231433	64100532	ATATATAT others(12): Show ATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02970.hp2 HG02280.hp1 HG02970.hp2	a0017 a0017	a0017c0012 a0017c0012	a0017c0012t0001 a0017c0012t0001	a0017c0012t0001g0073 a0017c0012t0001g0097 a0017c0012t0001g0073 a0017c0012t0001g0097	2	150	0.0133	-19	c.123 others(40): Show c.12382-1399_12382-1381delTATATATATATATATATAT	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	63/115			chr14	TogoVar
SYNJ1_chr21_32623763_32733013	32672966	ACATAATC others(12): Show ACATAATCTTGGTTTATGTC	A A	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0192 a0001c0001t0004g0192	1	346	0.0029	-19	c.172 others(36): Show c.1726+355_1726+373delGACATAAACCAAGATTATG	SYNJ1	ENSG00000159082.18	transcript	ENST00000674351.1	protein_coding	14/32			chr21	TogoVar
SYNJ2_chr6_157976863_158104176	157993797	GTTTTTTT others(12): Show GTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0001 a0002c0002t0003g0001	1	312	0.0032	-19	c.127 others(38): Show c.127+11726_127+11744delTTTTTTTTTTTTTTTTTTT	SYNJ2	ENSG00000078269.15	transcript	ENST00000355585.9	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
SYNJ2_chr6_157976863_158104176	158088034	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0122 a0001c0001t0002g0122	1	312	0.0032	-19	c.334 others(36): Show c.3344-600_3344-582delTTTTTTTTTTTTTTTTTTT	SYNJ2	ENSG00000078269.15	transcript	ENST00000355585.9	protein_coding	23/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
SYNPR_chr3_63273308_63621924	63336519	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01069.hp1 NA18943.hp1 HG00323.hp1 HG01069.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0138 a0001c0001t0002g0132 a0001c0001t0003g0140 a0001c0001t0001g0138 a0001c0001t0002g0132 a0001c0001t0003g0140	3	246	0.0122	-19	c.84+ others(36): Show c.84+57802_84+57820delAAAAAAAAAAAAAAAAAAA	SYNPR	ENSG00000163630.11	transcript	ENST00000478300.6	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
SYT10_chr12_33369238_33444819	33442758	CTTTTCTT others(12): Show CTTTTCTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp2 HG03195.hp1 HG03453.hp1 others(3): Show HG02970.hp2 HG03195.hp1 HG03453.hp1 HG03540.hp1 NA18522.hp2 NA21309.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0010 a0001c0005t0012 a0001c0005t0010 a0001c0005t0012	a0001c0005t0010g0219 a0001c0005t0010g0221 a0001c0005t0010g0223 others(2): Show a0001c0005t0010g0219 a0001c0005t0010g0221 a0001c0005t0010g0223 a0001c0005t0012g0014 a0001c0005t0012g0222	6	320	0.0188	-19	c.-32 others(30): Show c.-3255_-3237delAAAAAAAAAAAAAAGAAAA	SYT10	ENSG00000110975.8	transcript	ENST00000228567.7	protein_coding		2940		chr12	TogoVar
SYT14_chr1_209933217_210176315	210140417	TTATAAGA others(12): Show TTATAAGATAAGTGATTTGA	T T	intron_variant intron_variant	MODIFIER	HG03471.hp2 NA18906.hp1 NA20300.hp2 HG03471.hp2 NA18906.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0029 a0001c0001t0020 a0001c0001t0029	a0001c0001t0020g0235 a0001c0001t0029g0236 a0001c0001t0029g0237 a0001c0001t0020g0235 a0001c0001t0029g0236 a0001c0001t0029g0237	3	358	0.0084	-19	c.116 others(40): Show c.1165-15301_1165-15283delTAAGATAAGTGATTTGATA	SYT14	ENSG00000143469.21	transcript	ENST00000367019.6	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
SYT16_chr14_61807703_62117550	61886880	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTGTCT	C C	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01346.hp1 HG02109.hp1 others(7): Show HG01257.hp2 HG01346.hp1 HG02109.hp1 HG02683.hp2 HG03209.hp1 HG03471.hp1 HG03486.hp1 HG03516.hp2 NA19043.hp1 NA19043.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0004 a0001c0001 a0001c0002 a0003c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0050 a0001c0002t0002 a0003c0004t0004 a0003c0004t0029	a0001c0001t0001g0152 a0001c0001t0003g0118 a0001c0001t0003g0153 others(7): Show a0001c0001t0001g0152 a0001c0001t0003g0118 a0001c0001t0003g0153 a0001c0001t0005g0032 a0001c0001t0005g0150 a0001c0001t0005g0151 a0001c0001t0050g0112 a0001c0002t0002g0159 a0003c0004t0004g0090 a0003c0004t0029g0041	10	174	0.0575	-19	c.-32 others(40): Show c.-325+74083_-325+74101delTTTGTCTTTTTTTTTTTTT	SYT16	ENSG00000139973.18	transcript	ENST00000683842.1	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYT16_chr14_61807703_62117550	61926188	CTAGAAGG others(12): Show CTAGAAGGAATTTGCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG03688.hp2 NA20129.hp1 HG00140.hp2 HG03688.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0021 a0001c0002t0004 a0002c0003t0023 a0001c0001t0021 a0001c0002t0004 a0002c0003t0023	a0001c0001t0021g0093 a0001c0002t0004g0131 a0002c0003t0023g0034 a0001c0001t0021g0093 a0001c0002t0004g0131 a0002c0003t0023g0034	3	174	0.0172	-19	c.-32 others(40): Show c.-324-43940_-324-43922delAAGGAATTTGCTTTCTTAG	SYT16	ENSG00000139973.18	transcript	ENST00000683842.1	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYT17_chr16_19163240_19273332	19270702	TTGCTGGA others(12): Show TTGCTGGAGTCCTAACCTGA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0307 a0001c0001t0002g0307	1	324	0.0031	-19	c.36 others(30): Show c.3627_*3645delTGCTGGAGTCCTAACCTGA	SYT17	ENSG00000103528.17	transcript	ENST00000355377.7	protein_coding		2371		chr16	TogoVar
SYT1_chr12_78859774_79457008	78929407	CCCAAAAA others(12): Show CCCAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp2 HG02486.hp2 others(1): Show HG01256.hp1 HG01258.hp2 HG02486.hp2 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0009 a0001c0002t0010 a0001c0001t0003 a0001c0001t0009 a0001c0002t0010	a0001c0001t0003g0025 a0001c0001t0003g0026 a0001c0001t0009g0008 others(1): Show a0001c0001t0003g0025 a0001c0001t0003g0026 a0001c0001t0009g0008 a0001c0002t0010g0006	4	62	0.0645	-19	c.-21 others(40): Show c.-216-48391_-216-48373delCCAAAAAAAAAAAAAAAAA	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	1/10			chr12	TogoVar
SYT1_chr12_78859774_79457008	78931219	GAAAGAAA others(12): Show GAAAGAAAGAAAGAAAGAAA	G G	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0012 a0001c0001t0020g0012	1	62	0.0161	-19	c.-21 others(40): Show c.-216-46579_-216-46561delAAAGAAAGAAAGAAAGAAA	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	1/10			chr12	TogoVar
SYT1_chr12_78859774_79457008	79224744	TTTATTTT others(12): Show TTTATTTTTTATTATTATTA	T T	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02717.hp2 HG03098.hp2 others(2): Show HG02559.hp2 HG02717.hp2 HG03098.hp2 NA18906.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007	a0001c0001t0001g0031 a0001c0001t0002g0004 a0001c0001t0004g0048 others(2): Show a0001c0001t0001g0031 a0001c0001t0002g0004 a0001c0001t0004g0048 a0001c0001t0007g0024 a0001c0001t0007g0030	5	62	0.0807	-19	c.166 others(36): Show c.166+7065_166+7083delTTTTATTATTATTATTATT	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT1_chr12_78859774_79457008	79245483	AAAAAAAG others(12): Show AAAAAAAGAAAAGAAAAAAG	A A	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0015 a0001c0002t0012g0015	1	62	0.0161	-19	c.166 others(38): Show c.166+27805_166+27823delGAAAAGAAAAAAGAAAAAA	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT2_chr1_202585596_202715454	202691687	GAGAGGGA others(12): Show GAGAGGGAGAGGGAGAGGGA	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0037 a0001c0002t0037	a0001c0002t0037g0039 a0001c0002t0037g0039	1	276	0.0036	-19	c.-18 others(38): Show c.-18+18552_-18+18570delTCCCTCTCCCTCTCCCTCT	SYT2	ENSG00000143858.12	transcript	ENST00000367268.5	protein_coding	1/8			chr1	TogoVar
SYT9_chr11_7246904_7474043	7432569	AAAAAAAA others(12): Show AAAAAAAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG02683.hp1 NA18977.hp1 HG02683.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0136 a0001c0001t0004g0225 a0001c0001t0003g0136 a0001c0001t0004g0225	2	272	0.0074	-19	c.146 others(40): Show c.1467+11936_1467+11954delAAAAAAAAAAAAATATATA	SYT9	ENSG00000170743.17	transcript	ENST00000318881.11	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
SZT2_chr1_43384899_43459247	43392109	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0009 a0009	a0009c0013 a0009c0013	a0009c0013t0001 a0009c0013t0001	a0009c0013t0001g0188 a0009c0013t0001g0188	1	290	0.0035	-19	c.27+ others(34): Show c.27+2115_27+2133delAAAAAAAAAAAAAAAAAAT	SZT2	ENSG00000198198.17	transcript	ENST00000634258.3	protein_coding	1/71			chr1	TogoVar
TAAR5_chr6_132583592_132594741	132589742	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	1	444	0.0023	-19	c.-75 others(26): Show c.-75_-57delTTTTTTTTTTTTTTTTTTT	TAAR5	ENSG00000135569.5	transcript	ENST00000258034.4	protein_coding		2		chr6	TogoVar
TAB3_chrX_30822442_30894254	30868565	GCTTATAT others(12): Show GCTTATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	NA18972.hp2 NA18979.hp2 NA20300.hp1 NA18972.hp2 NA18979.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0229 a0001c0001t0005g0232 a0001c0001t0005g0233 a0001c0001t0005g0229 a0001c0001t0005g0232 a0001c0001t0005g0233	3	302	0.0099	-19	c.-27 others(38): Show c.-279-1035_-279-1017delATATATATATATATATAAG	TAB3	ENSG00000157625.16	transcript	ENST00000288422.4	protein_coding	2/10			chrX	TogoVar
TACC2_chr10_121984163_122259542	122198964	TGGCAGGA others(12): Show TGGCAGGAGAGCTGAGGCAG	T T	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0004	a0001c0005t0004g0303 a0001c0005t0004g0303	1	306	0.0033	-19	c.597 others(38): Show c.5971+3790_5971+3808delGCAGGAGAGCTGAGGCAGG	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	8/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACR3_chr4_103581031_103724985	103642216	ATATATAT others(12): Show ATATATATATAATCACATTG	A A	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0188 a0001c0001t0041g0188	1	280	0.0036	-19	c.888 others(38): Show c.888+13959_888+13977delCAATGTGATTATATATATA	TACR3	ENSG00000169836.5	transcript	ENST00000304883.3	protein_coding	3/4			chr4	TogoVar
TADA3_chr3_9774967_9797473	9793728	CCCTTTTT others(12): Show CCCTTTTTCATACATGTGGG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 HG02630.hp2 NA19240.hp2 HG02280.hp1 HG02630.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0003 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0001g0003 a0001c0001t0003g0041 a0001c0001t0003g0042	3	410	0.0073	-19	c.-15 others(30): Show c.-1559_-1541delCCCACATGTATGAAAAAGG	TADA3	ENSG00000171148.14	transcript	ENST00000301964.7	protein_coding		1256		chr3	TogoVar
TAF12_chr1_28597850_28648067	28615678	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0051 a0001c0001t0001g0051	1	302	0.0033	-19	c.246 others(36): Show c.246+2256_246+2274delTTTTTTTTTTTTTTTTTTT	TAF12	ENSG00000120656.14	transcript	ENST00000373824.9	protein_coding	3/5			chr1	TogoVar
TAF1_chrX_71361357_71471005	71456649	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01069.hp1 HG01071.hp2 others(2): Show HG00738.hp1 HG01069.hp1 HG01071.hp2 HG03688.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	a0001c0001t0002g0042 a0001c0001t0004g0029 a0001c0001t0004g0030 others(2): Show a0001c0001t0002g0042 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0163	5	200	0.0250	-19	c.493 others(38): Show c.4939-1567_4939-1549delTTTTTTTTTTTTTTTTTTT	TAF1	ENSG00000147133.17	transcript	ENST00000423759.6	protein_coding	34/37		INFO_REALIGN_3_PRIME	chrX	TogoVar
TAF2_chr8_119725774_119837841	119777557	CAATTGCT others(12): Show CAATTGCTATTTGCTAAATA	C C	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02055.hp1 HG02280.hp2 others(2): Show HG01167.hp2 HG02055.hp1 HG02280.hp2 HG02895.hp2 NA21309.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0003 a0003c0006t0003	a0003c0006t0003g0272 a0003c0006t0003g0273 a0003c0006t0003g0274 others(2): Show a0003c0006t0003g0272 a0003c0006t0003g0273 a0003c0006t0003g0274 a0003c0006t0003g0275 a0003c0006t0003g0276	5	322	0.0155	-19	c.236 others(36): Show c.2364+443_2364+461delTATTTAGCAAATAGCAATT	TAF2	ENSG00000064313.13	transcript	ENST00000378164.7	protein_coding	18/25			chr8	TogoVar
TAF3_chr10_7813505_8021631	7815578	ATATATAT others(12): Show ATATATATATTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03098.hp2 NA18612.hp2 NA18983.hp2 HG03098.hp2 NA18612.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0001t0001g0057 a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0001t0001g0057	3	344	0.0087	-19	c.-31 others(30): Show c.-3131_-3113delTATATATATTTTTTTTTTT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		2926		chr10	TogoVar
TAF3_chr10_7813505_8021631	7815580	ATATATAT others(12): Show ATATATATTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	344	0.0029	-19	c.-31 others(30): Show c.-3129_-3111delTATATATTTTTTTTTTTTT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		2924		chr10	TogoVar
TAF3_chr10_7813505_8021631	8020788	GCAGGAGA others(12): Show GCAGGAGAATCCCTTGAACC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 HG02559.hp2 HG02630.hp1 others(4): Show HG02055.hp2 HG02559.hp2 HG02630.hp1 HG02896.hp2 HG02922.hp1 HG03209.hp1 NA20300.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0228 a0003c0003t0001g0233 a0003c0003t0001g0236 others(4): Show a0003c0003t0001g0228 a0003c0003t0001g0233 a0003c0003t0001g0236 a0003c0003t0001g0237 a0003c0003t0001g0241 a0003c0003t0001g0244 a0003c0003t0001g0298	7	344	0.0204	-19	c.60 others(30): Show c.6038_*6056delCAGGAGAATCCCTTGAACC	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		4158		chr10	TogoVar
TAF4B_chr18_26221445_26396685	26261241	GCGGGATC others(12): Show GCGGGATCTCGGCTCACTGC	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00735.hp2 HG01099.hp1 others(6): Show HG00597.hp1 HG00735.hp2 HG01099.hp1 HG01106.hp2 HG01167.hp1 HG01517.hp2 HG02615.hp2 NA20752.hp2 NA21309.hp1	a0001 a0003 a0001 a0003	a0001c0003 a0003c0006 a0001c0003 a0003c0006	a0001c0003t0003 a0003c0006t0009 a0003c0006t0030 a0001c0003t0003 a0003c0006t0009 a0003c0006t0030	a0001c0003t0003g0148 a0003c0006t0009g0001 a0003c0006t0009g0173 others(6): Show a0001c0003t0003g0148 a0003c0006t0009g0001 a0003c0006t0009g0173 a0003c0006t0009g0174 a0003c0006t0009g0175 a0003c0006t0009g0177 a0003c0006t0009g0178 a0003c0006t0009g0179 a0003c0006t0030g0176	9	274	0.0329	-19	c.344 others(36): Show c.344-3909_344-3891delCGGGATCTCGGCTCACTGC	TAF4B	ENSG00000141384.13	transcript	ENST00000269142.10	protein_coding	1/14		INFO_REALIGN_3_PRIME	chr18	TogoVar
TAF4B_chr18_26221445_26396685	26309245	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	274	0.0037	-19	c.183 others(38): Show c.1833-5967_1833-5949delTTTTTTTTTTTTTTTTTTT	TAF4B	ENSG00000141384.13	transcript	ENST00000269142.10	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr18	TogoVar
TAF4B_chr18_26221445_26396685	26393430	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0263 a0001c0001t0011g0263	1	274	0.0037	-19	c.34 others(30): Show c.3419_*3437delTTTTTTTTTTTTTTTTTTT	TAF4B	ENSG00000141384.13	transcript	ENST00000269142.10	protein_coding		1746		chr18	TogoVar
TAF4_chr20_61969798_62070881	62066065	CGCGGGCG others(12): Show CGCGGGCGGTCGGCCGGGGT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG00735.hp2 HG00639.hp2 HG00735.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0007 a0001c0004t0001 a0001c0004t0007	a0001c0004t0001g0197 a0001c0004t0007g0193 a0001c0004t0001g0197 a0001c0004t0007g0193	2	314	0.0064	-19	c.-27 others(28): Show c.-274_-256delACCCCGGCCGACCGCCCGC	TAF4	ENSG00000130699.20	transcript	ENST00000252996.9	protein_coding		185		chr20	TogoVar
TAF6_chr7_100102070_100124358	100121112	ATATATTT others(12): Show ATATATTTTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	408	0.0025	-19	c.-19 others(30): Show c.-1987_-1969delAAAAAAAAAAAAAAATATA	TAF6	ENSG00000106290.16	transcript	ENST00000453269.7	protein_coding		1755		chr7	TogoVar
TAF8_chr6_42045524_42088272	42075656	GACTTCTT others(12): Show GACTTCTTCCCCGTGGAAGA	G G	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0052 a0001c0003t0052	a0001c0003t0052g0269 a0001c0003t0052g0269	1	454	0.0022	-19	c.781 others(36): Show c.781-1432_781-1414delGTGGAAGAACTTCTTCCCC	TAF8	ENSG00000137413.17	transcript	ENST00000372977.8	protein_coding	7/8		INFO_REALIGN_3_PRIME	chr6	TogoVar
TAFA1_chr3_67999247_68550621	68405699	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02293.hp2 HG01978.hp1 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0077 a0001c0001t0003g0085 a0001c0001t0003g0077 a0001c0001t0003g0085	2	156	0.0128	-19	c.119 others(38): Show c.119-11558_119-11540delAAAAAAAAAAAAAAAAAAA	TAFA1	ENSG00000183662.12	transcript	ENST00000478136.6	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
TAFA1_chr3_67999247_68550621	68486078	TTTTATTT others(12): Show TTTTATTTTATTTTATTTTA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00673.hp2 others(15): Show HG00099.hp1 HG00280.hp2 HG00673.hp2 HG01167.hp2 HG01169.hp1 HG01243.hp2 HG02486.hp2 HG02615.hp2 HG02622.hp2 HG02683.hp1 HG02970.hp2 HG03139.hp2 HG03453.hp2 HG03486.hp1 HG03516.hp1 HG03704.hp1 NA18944.hp2 NA18981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0019 a0001c0001t0021	a0001c0001t0001g0048 a0001c0001t0001g0064 a0001c0001t0001g0072 others(15): Show a0001c0001t0001g0048 a0001c0001t0001g0064 a0001c0001t0001g0072 a0001c0001t0001g0075 a0001c0001t0001g0110 a0001c0001t0001g0126 a0001c0001t0001g0131 a0001c0001t0001g0135 a0001c0001t0002g0015 a0001c0001t0002g0026 a0001c0001t0002g0049 a0001c0001t0002g0063 a0001c0001t0003g0102 a0001c0001t0004g0104 a0001c0001t0004g0124 a0001c0001t0007g0040 a0001c0001t0019g0054 a0001c0001t0021g0003	18	156	0.1154	-19	c.260 others(38): Show c.260-52674_260-52656delATTTTATTTTATTTTATTT	TAFA1	ENSG00000183662.12	transcript	ENST00000478136.6	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
TAFA2_chr12_61703273_62197773	61955600	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0187 a0001c0001t0005g0187	1	220	0.0046	-19	c.-1- others(36): Show c.-1-88193_-1-88175delTTTTTTTTTTTTTTTTTTT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	61955615	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03195.hp2 HG03486.hp1 HG03130.hp2 HG03195.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0018 a0001c0001t0032 a0001c0001t0010 a0001c0001t0018 a0001c0001t0032	a0001c0001t0010g0212 a0001c0001t0018g0217 a0001c0001t0032g0218 a0001c0001t0010g0212 a0001c0001t0018g0217 a0001c0001t0032g0218	3	220	0.0136	-19	c.-1- others(36): Show c.-1-88208_-1-88190delATTTTTTTTTTTTTTTTTT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	61955625	AAAAAAAA others(12): Show AAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03710.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0177 a0001c0001t0002g0177	1	220	0.0046	-19	c.-1- others(36): Show c.-1-88218_-1-88200delATATATATATATTTTTTTT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	61955627	AAAAAAAT others(12): Show AAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	220	0.0046	-19	c.-1- others(36): Show c.-1-88220_-1-88202delATATATATATATATTTTTT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	61955629	AAAAATAT others(12): Show AAAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0179 a0001c0001t0001g0179	1	220	0.0046	-19	c.-1- others(36): Show c.-1-88222_-1-88204delATATATATATATATATTTT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	62088703	GAGGATTG others(12): Show GAGGATTGTGGCACAGGAAT	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp2 others(49): Show HG00099.hp2 HG00140.hp2 HG00323.hp2 HG00438.hp2 HG00544.hp2 HG00558.hp1 HG00741.hp2 HG01070.hp1 HG01071.hp2 HG01074.hp1 HG01123.hp2 HG01255.hp2 HG01358.hp2 HG01928.hp1 HG01952.hp2 HG02056.hp1 HG02071.hp2 HG02074.hp2 HG02135.hp1 HG02486.hp1 HG02615.hp1 HG02630.hp1 HG02723.hp2 HG02965.hp1 HG03098.hp2 HG03209.hp1 HG03239.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp1 HG06807.hp1 NA18747.hp1 NA18948.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18964.hp1 NA18971.hp1 NA18972.hp2 NA18977.hp2 NA18988.hp1 NA18992.hp1 NA18992.hp2 NA18999.hp1 NA19007.hp2 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19074.hp2 NA19077.hp1 NA19090.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0021 a0001c0002t0001	a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0052 others(49): Show a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0052 a0001c0001t0001g0063 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0152 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0002g0043 a0001c0001t0002g0051 a0001c0001t0002g0062 a0001c0001t0002g0069 a0001c0001t0002g0071 a0001c0001t0002g0078 a0001c0001t0002g0080 a0001c0001t0002g0084 a0001c0001t0002g0092 a0001c0001t0002g0093 a0001c0001t0002g0113 a0001c0001t0002g0156 a0001c0001t0002g0157 a0001c0001t0002g0184 a0001c0001t0003g0072 a0001c0001t0003g0079 a0001c0001t0003g0099 a0001c0001t0003g0119 a0001c0001t0004g0061 a0001c0001t0005g0197 a0001c0001t0006g0181 a0001c0001t0007g0107 a0001c0001t0007g0108 a0001c0001t0012g0183 a0001c0001t0013g0193 a0001c0001t0013g0205 a0001c0001t0014g0001 a0001c0001t0015g0009 a0001c0001t0015g0011 a0001c0001t0021g0010 a0001c0002t0001g0041	52	220	0.2364	-19	c.-2+ others(38): Show c.-2+102537_-2+102555delATTCCTGTGCCACAATCCT	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar
TAFA5_chr22_48484553_48756932	48542096	ATGTGTGT others(12): Show ATGTGTGTGTGGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02040.hp2 HG02145.hp2 others(4): Show HG00621.hp2 HG02040.hp2 HG02145.hp2 HG02155.hp2 NA18747.hp2 NA18945.hp1 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0093 a0001c0001t0001g0107 a0001c0001t0001g0112 others(4): Show a0001c0001t0001g0093 a0001c0001t0001g0107 a0001c0001t0001g0112 a0001c0001t0001g0114 a0001c0001t0001g0124 a0001c0001t0001g0174 a0001c0001t0002g0131	7	258	0.0271	-19	c.112 others(38): Show c.112+52399_112+52417delTGTGGTGTGTGTGTGTGTG	TAFA5	ENSG00000219438.9	transcript	ENST00000402357.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr22	TogoVar
TAFA5_chr22_48484553_48756932	48650059	AGGCTGCC others(12): Show AGGCTGCCATCTAATTTAAT	A A	intron_variant intron_variant	MODIFIER	NA18995.hp1 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	258	0.0039	-19	c.262 others(36): Show c.262+3314_262+3332delGGCTGCCATCTAATTTAAT	TAFA5	ENSG00000219438.9	transcript	ENST00000402357.6	protein_coding	2/3			chr22	TogoVar
TAGLN2_chr1_159913111_159930507	159914058	ATCATGGG others(12): Show ATCATGGGCCAAGCCTACTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG01516.hp1 HG03130.hp2 HG01243.hp1 HG01516.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0046 a0001c0001t0001g0002 a0001c0001t0001g0046	3	446	0.0067	-19	c.47 others(30): Show c.4723_*4741delAAGTAGGCTTGGCCCATGA	TAGLN2	ENSG00000158710.15	transcript	ENST00000368097.9	protein_coding		4052		chr1	TogoVar

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