Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ZNRF3_chr22_28878572_29062488	28937203	ATATATAT others(12): Show ATATATATATATATTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0018 a0001c0001t0038g0018	1	251	0.0040	-19	c.301 others(38): Show c.301-49871_301-49853delATATATATATATTTTTTTT	ZNRF3	ENSG00000183579.16	transcript	ENST00000544604.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr22	TogoVar
ZNRF3_chr22_28878572_29062488	28937207	ATATATAT others(12): Show ATATATATATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0257 a0001c0001t0004g0257	1	265	0.0038	-19	c.301 others(38): Show c.301-49867_301-49849delATATATATTTTTTTTTTTT	ZNRF3	ENSG00000183579.16	transcript	ENST00000544604.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr22	TogoVar
ZP3_chr7_76419950_76447069	76436030	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG03540.hp1 NA18982.hp2 others(1): Show HG02895.hp1 HG03540.hp1 NA18982.hp2 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0001 a0001c0003t0001 a0002c0001t0001 a0001c0002t0001 a0001c0003t0001 a0002c0001t0001	a0001c0002t0001g0239 a0001c0003t0001g0160 a0002c0001t0001g0126 others(1): Show a0001c0002t0001g0239 a0001c0003t0001g0160 a0002c0001t0001g0126 a0002c0001t0001g0279	4	15	0.2667	-19	c.831 others(36): Show c.831+1902_831+1920delTTTTTTTTTTTTTTTTTTT	ZP3	ENSG00000188372.15	transcript	ENST00000394857.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr7	TogoVar
ZPBP_chr7_49932441_50098246	49970466	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	4	0.2500	-19	c.961 others(38): Show c.961+12857_961+12875delAAAAAAAAAAAAAAAAAAA	ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	7/7			chr7	TogoVar
ZPR1_chr11_116768799_116793023	116775627	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0062 a0001c0001t0062	a0001c0001t0062g0111 a0001c0001t0062g0111	1	45	0.0222	-19	c.32 others(30): Show c.3279_*3297delTTTTTTTTTTTTTTTTTTT	ZPR1	ENSG00000109917.11	transcript	ENST00000227322.8	protein_coding	14/14	3279		chr11	TogoVar
ZRANB1_chr10_124937123_124993189	124982018	GAGCATCG others(12): Show GAGCATCGCAAGTATAGATT	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02965.hp1 HG02896.hp2 HG02897.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0017 a0001c0001t0021g0314 a0001c0001t0021g0017 a0001c0001t0021g0314	3	336	0.0089	-19	c.154 others(36): Show c.1548+202_1548+220delATAGATTAGCATCGCAAGT	ZRANB1	ENSG00000019995.6	transcript	ENST00000359653.4	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr10	TogoVar
ZRANB3_chr2_135191969_135536218	135426856	AAAAAAAA others(12): Show AAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19004.hp2 NA19004.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0208 a0002c0002t0002g0208	1	207	0.0048	-19	c.162 others(38): Show c.162-36055_162-36037delATATATATATATTTTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426858	AAAAAAAT others(12): Show AAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0021 a0002c0002t0006g0021	1	196	0.0051	-19	c.162 others(38): Show c.162-36057_162-36039delATATATATATATATTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426862	AAATATAT others(12): Show AAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG04199.hp1 NA18952.hp2 HG04199.hp1 NA18952.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0006 a0002c0002t0002 a0002c0002t0006	a0002c0002t0002g0205 a0002c0002t0006g0010 a0002c0002t0002g0205 a0002c0002t0006g0010	2	202	0.0099	-19	c.162 others(38): Show c.162-36061_162-36043delATATATATATATATATATT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135493097	AAATATAT others(12): Show AAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0140 a0001c0001t0005g0140	1	210	0.0048	-19	c.161 others(38): Show c.161+11213_161+11231delATATATATATATATATATT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135532578	TCTTCATG others(12): Show TCTTCATGGTTATAGTTTAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0086 a0001c0001t0019g0086	1	212	0.0047	-19	c.-14 others(30): Show c.-1478_-1460delGTAAACTATAACCATGAAG	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding		1361		chr2	TogoVar
ZSCAN18_chr19_58078856_58103231	58089302	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02280.hp1 HG02572.hp2 others(6): Show HG02257.hp1 HG02280.hp1 HG02572.hp2 HG02886.hp1 HG02965.hp2 HG03195.hp2 HG03654.hp2 HG04184.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0003 a0001c0006t0001 a0001c0001t0003 a0001c0006t0001	a0001c0001t0003g0031 a0001c0001t0003g0095 a0001c0001t0003g0096 others(5): Show a0001c0001t0003g0031 a0001c0001t0003g0095 a0001c0001t0003g0096 a0001c0001t0003g0097 a0001c0001t0003g0098 a0001c0001t0003g0117 a0001c0006t0001g0137 a0001c0006t0001g0295	9	52	0.1731	-19	c.404 others(34): Show c.404-484_404-466delTTTTTTTTTTTTTTTTTTT	ZSCAN18	ENSG00000121413.13	transcript	ENST00000601144.6	protein_coding	2/6			chr19	TogoVar
ZSCAN5A_chr19_56216303_56319839	56243094	TATTATTT others(12): Show TATTATTTCACTTCCTGAAA	T T	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0336 a0001c0001t0001g0336	1	360	0.0028	-19	c.-12 others(40): Show c.-127-17940_-127-17922delTTTCAGGAAGTGAAATAAT	ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding	2/5			chr19	TogoVar
ZSWIM4_chr19_13790443_13837254	13800240	ATTTCTTT others(12): Show ATTTCTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02280.hp2 HG02630.hp2 others(9): Show HG02109.hp2 HG02280.hp2 HG02630.hp2 HG02647.hp2 HG02723.hp1 HG02965.hp2 HG03139.hp2 HG03579.hp1 NA18522.hp1 NA19043.hp1 NA19240.hp2 NA20300.hp1	a0001 a0003 a0001 a0003	a0001c0005 a0003c0006 a0003c0012 a0001c0005 a0003c0006 a0003c0012	a0001c0005t0002 a0003c0006t0002 a0003c0006t0005 others(3): Show a0001c0005t0002 a0003c0006t0002 a0003c0006t0005 a0003c0006t0012 a0003c0006t0024 a0003c0012t0018	a0001c0005t0002g0318 a0001c0005t0002g0320 a0003c0006t0002g0116 others(9): Show a0001c0005t0002g0318 a0001c0005t0002g0320 a0003c0006t0002g0116 a0003c0006t0002g0118 a0003c0006t0002g0124 a0003c0006t0005g0117 a0003c0006t0012g0119 a0003c0006t0012g0120 a0003c0006t0012g0122 a0003c0006t0024g0115 a0003c0012t0018g0121 a0003c0012t0018g0123	12	346	0.0347	-19	c.355 others(34): Show c.355+323_355+341delCTTTTTTTTTTTTTTTTTT	ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
ZSWIM4_chr19_13790443_13837254	13800244	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00408.hp2 HG00438.hp2 others(78): Show HG00323.hp2 HG00408.hp2 HG00438.hp2 HG00733.hp1 HG01106.hp1 HG01106.hp2 HG01123.hp1 HG01256.hp2 HG01346.hp2 HG01433.hp2 HG01884.hp1 HG01891.hp2 HG01981.hp1 HG01981.hp2 HG02015.hp2 HG02040.hp2 HG02055.hp2 HG02080.hp2 HG02135.hp2 HG02148.hp1 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02486.hp1 HG02559.hp2 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02683.hp2 HG02717.hp2 HG02886.hp1 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03490.hp2 HG03540.hp2 HG03654.hp2 HG03942.hp2 HG04115.hp1 HG04228.hp2 HG06807.hp2 NA18946.hp1 NA18950.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18962.hp2 NA18966.hp2 NA18977.hp2 NA18980.hp2 NA18983.hp1 NA18999.hp2 NA19000.hp2 NA19005.hp2 NA19007.hp2 NA19010.hp1 NA19030.hp2 NA19043.hp2 NA19054.hp2 NA19056.hp1 NA19070.hp1 NA19070.hp2 NA19076.hp2 NA19077.hp1 NA19078.hp1 NA19084.hp2 NA19088.hp1 NA19240.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0004 others(3): Show a0001 a0002 a0004 a0007 a0009 a0013	a0001c0001 a0001c0002 a0001c0017 others(12): Show a0001c0001 a0001c0002 a0001c0017 a0001c0018 a0001c0020 a0002c0003 a0002c0004 a0002c0015 a0002c0019 a0002c0032 a0004c0008 a0004c0011 a0007c0014 a0009c0024 a0013c0025	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(36): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0028 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0008 a0001c0002t0009 a0001c0002t0017 a0001c0002t0027 a0001c0002t0029 a0001c0017t0002 a0001c0018t0009 a0001c0020t0003 a0002c0003t0001 a0002c0003t0002 a0002c0003t0004 a0002c0003t0005 a0002c0003t0008 a0002c0003t0021 a0002c0003t0022 a0002c0004t0002 a0002c0004t0006 a0002c0015t0006 a0002c0019t0032 a0002c0032t0002 a0004c0008t0003 a0004c0011t0015 a0007c0014t0010 a0007c0014t0011 a0009c0024t0003 a0013c0025t0001	a0001c0001t0001g0086 a0001c0001t0001g0111 a0001c0001t0001g0114 others(78): Show a0001c0001t0001g0086 a0001c0001t0001g0111 a0001c0001t0001g0114 a0001c0001t0002g0315 a0001c0001t0005g0102 a0001c0001t0009g0077 a0001c0001t0010g0006 a0001c0001t0010g0034 a0001c0001t0010g0036 a0001c0001t0011g0006 a0001c0001t0011g0035 a0001c0001t0011g0037 a0001c0001t0028g0033 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0068 a0001c0002t0001g0069 a0001c0002t0002g0058 a0001c0002t0003g0065 a0001c0002t0004g0039 a0001c0002t0004g0066 a0001c0002t0004g0070 a0001c0002t0004g0071 a0001c0002t0004g0074 a0001c0002t0005g0056 a0001c0002t0005g0057 a0001c0002t0005g0059 a0001c0002t0005g0060 a0001c0002t0005g0061 a0001c0002t0005g0063 a0001c0002t0006g0072 a0001c0002t0008g0021 a0001c0002t0008g0064 a0001c0002t0009g0106 a0001c0002t0009g0113 a0001c0002t0017g0038 a0001c0002t0027g0112 a0001c0002t0029g0073 a0001c0017t0002g0062 a0001c0018t0009g0104 a0001c0020t0003g0257 a0002c0003t0001g0004 a0002c0003t0001g0126 a0002c0003t0001g0128 a0002c0003t0001g0321 a0002c0003t0002g0078 a0002c0003t0004g0089 a0002c0003t0004g0090 a0002c0003t0005g0110 a0002c0003t0008g0004 a0002c0003t0008g0026 a0002c0003t0008g0027 a0002c0003t0008g0028 a0002c0003t0021g0101 a0002c0003t0022g0092 a0002c0004t0002g0079 a0002c0004t0002g0081 a0002c0004t0002g0082 a0002c0004t0002g0083 a0002c0004t0002g0087 a0002c0004t0002g0088 a0002c0004t0002g0091 a0002c0004t0002g0093 a0002c0004t0002g0094 a0002c0004t0002g0099 a0002c0004t0002g0309 a0002c0004t0002g0310 a0002c0004t0006g0098 a0002c0015t0006g0085 a0002c0015t0006g0097 a0002c0019t0032g0055 a0002c0032t0002g0084 a0004c0008t0003g0007 a0004c0008t0003g0103 a0004c0008t0003g0109 a0004c0011t0015g0107 a0004c0011t0015g0108 a0007c0014t0010g0096 a0007c0014t0011g0080 a0009c0024t0003g0127 a0013c0025t0001g0095	81	154	0.5260	-19	c.355 others(34): Show c.355+344_355+362delTTTTTTTTTTTTTTTTTTT	ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
ZSWIM7_chr17_15971560_16004704	15976128	TATATATA others(12): Show TATATATATATATAAATAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 NA18906.hp1 HG01891.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0027 a0001c0001t0009g0027	2	342	0.0058	-19	c.19 others(30): Show c.1900_*1918delTTTATTTATATATATATAT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		431		chr17	TogoVar
ZYG11A_chr1_52837760_52899998	52846348	ATATATAT others(12): Show ATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0010 a0003c0003t0010	a0003c0003t0010g0082 a0003c0003t0010g0082	1	288	0.0035	-19	c.90+ others(34): Show c.90+3377_90+3395delATATATATATATATATATT	ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52773615	ATATATAT others(12): Show ATATATATATATATTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0152 a0001c0001t0011g0152	1	344	0.0029	-19	c.951 others(36): Show c.951+1843_951+1861delATATATATATATTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817809	ATATATAT others(12): Show ATATATATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0154 a0001c0001t0060g0154	1	331	0.0030	-19	c.204 others(38): Show c.2044+1182_2044+1200delATATATTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817811	ATATATTT others(12): Show ATATATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0152 a0001c0001t0011g0152	1	335	0.0030	-19	c.204 others(38): Show c.2044+1184_2044+1202delATATTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(12): Show ATATTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA19056.hp2 NA18959.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0119 a0001c0001t0001g0045 a0001c0001t0001g0119	2	332	0.0060	-19	c.204 others(38): Show c.2044+1186_2044+1204delATTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 NA18998.hp2 HG00642.hp1 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0083 a0001c0001t0011g0126 a0001c0001t0001g0083 a0001c0001t0011g0126	2	280	0.0071	-19	c.204 others(38): Show c.2044+1208_2044+1226delTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZZEF1_chr17_3999445_4148030	4112032	AAATATAT others(12): Show AAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0008 a0008	a0008c0007 a0008c0007	a0008c0007t0002 a0008c0007t0002	a0008c0007t0002g0122 a0008c0007t0002g0122	1	289	0.0035	-19	c.106 others(36): Show c.1066+558_1066+576delATATATATATATATATATT	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54			chr17	TogoVar

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