Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LMOD1_chr1_201891456_201951548	201924666	AAAGAAAG others(12): Show AAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG03486.hp2 NA18940.hp2 others(2): Show HG01123.hp1 HG03486.hp2 NA18940.hp2 NA19067.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0078 a0001c0001t0001g0316 a0001c0001t0001g0330 others(2): Show a0001c0001t0001g0078 a0001c0001t0001g0316 a0001c0001t0001g0330 a0001c0001t0001g0339 a0001c0001t0003g0392	5	400	0.0125	-19	c.261 others(38): Show c.261+21395_261+21413delCTTTCTTTCTTTCTTTCTT	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding	1/2			chr1	TogoVar
LMX1B_chr9_126608928_126706032	126697839	GTTTTGTT others(12): Show GTTTTGTTTTGTTTTGTTTT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0196 a0001c0010t0196	a0001c0010t0196g0146 a0001c0010t0196g0146	1	342	0.0029	-19	c.13 others(30): Show c.1389_*1407delTTTTGTTTTGTTTTGTTTT	LMX1B	ENSG00000136944.19	transcript	ENST00000373474.9	protein_coding	8/8	1389		chr9	TogoVar
LNX1_chr4_53454301_53596486	53585809	AGAACTGT others(12): Show AGAACTGTGAGACAATAAAT	A A	intron_variant intron_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0063 a0001c0001t0003g0063	1	356	0.0028	-19	c.-87 others(36): Show c.-87+5560_-87+5578delATTTATTGTCTCACAGTTC	LNX1	ENSG00000072201.14	transcript	ENST00000263925.8	protein_coding	1/10			chr4	TogoVar
LOC122513141_chr9_137212494_137224361	137222153	AGGGGCGC others(12): Show AGGGGCGCGGGCGCGGGCGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	2	390	0.0051	-19	c.35 others(30): Show c.3552_*3570delGGGGCGCGGGCGCGGGCGT	LOC122513141	ENSG00000284976.2	transcript	ENST00000645271.2	protein_coding		2793		chr9	TogoVar
LOC122539214_chr19_52645447_52695496	52687448	ATTATAAT others(12): Show ATTATAATATAAATTATAAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00423.hp1 NA18950.hp1 others(1): Show HG00140.hp1 HG00423.hp1 NA18950.hp1 NA19055.hp2	a0002 a0003 a0005 others(1): Show a0002 a0003 a0005 a0016	a0002c0002 a0003c0003 a0005c0005 others(1): Show a0002c0002 a0003c0003 a0005c0005 a0016c0019	a0002c0002t0003 a0003c0003t0002 a0005c0005t0007 others(1): Show a0002c0002t0003 a0003c0003t0002 a0005c0005t0007 a0016c0019t0037	a0002c0002t0003g0015 a0003c0003t0002g0058 a0005c0005t0007g0016 others(1): Show a0002c0002t0003g0015 a0003c0003t0002g0058 a0005c0005t0007g0016 a0016c0019t0037g0014	4	452	0.0089	-19	c.-20 others(36): Show c.-20+2976_-20+2994delATTATAATTTATATTATAA	LOC122539214	ENSG00000269825.3	transcript	ENST00000598322.3	protein_coding	1/3			chr19	TogoVar
LOC127933115_chrX_23778278_23788367	23781874	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	334	0.0030	-19	c.-14 others(30): Show c.-1403_-1385delAAAAAAAAAAAAAAAAAAA	LOC127933115	ENSG00000288706.1	transcript	ENST00000683890.1	protein_coding		1403		chrX	TogoVar
LOC128071547_chr12_120529697_120539957	120536451	GACTTAAA others(12): Show GACTTAAAACAAACAAAAAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18949.hp1 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	408	0.0025	-19	c.14 others(30): Show c.1495_*1513delACTTAAAACAAACAAAAAA	LOC128071547	ENSG00000288623.1	transcript	ENST00000675818.1	protein_coding		1495		chr12	TogoVar
LOC128462377_chr16_89312046_89423292	89323471	GGGGGGCA others(12): Show GGGGGGCAGAGCCCAGGGCA	G G	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0342 a0001c0001t0000g0342	1	366	0.0027	-19	c.10- others(34): Show c.10-6415_10-6397delTGCCCTGGGCTCTGCCCCC	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11369960	AAAAAAAA others(12): Show AAAAAAAAAAATATGTGTGT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG01169.hp1 NA18906.hp2 HG01167.hp1 HG01169.hp1 NA18906.hp2	a0021 a0153 a0021 a0153	a0021c0015 a0153c0036 a0021c0015 a0153c0036	a0021c0015t0002 a0153c0036t0002 a0021c0015t0002 a0153c0036t0002	a0021c0015t0002g0063 a0021c0015t0002g0064 a0153c0036t0002g0036 a0021c0015t0002g0063 a0021c0015t0002g0064 a0153c0036t0002g0036	3	310	0.0097	-19	c.27 others(30): Show c.2755_*2773delACACACATATTTTTTTTTT	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding		2054		chr16	TogoVar
LOC400499_chr16_11367015_11532247	11492297	CCCATCCA others(12): Show CCCATCCACCCACCCATCAT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00597.hp1 HG00735.hp2 others(56): Show HG00408.hp1 HG00597.hp1 HG00735.hp2 HG01081.hp2 HG01106.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01243.hp1 HG01255.hp2 HG01257.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp2 HG02015.hp1 HG02135.hp1 HG02155.hp1 HG02165.hp1 HG02257.hp1 HG02257.hp2 HG02280.hp1 HG02300.hp2 HG02451.hp1 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02723.hp1 HG02735.hp1 HG02886.hp2 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG03098.hp2 HG03139.hp1 HG03209.hp1 HG03471.hp2 HG03486.hp2 HG03491.hp1 HG03579.hp1 HG03927.hp2 HG04115.hp1 HG04228.hp2 NA18906.hp2 NA18956.hp1 NA18964.hp2 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18995.hp1 NA19030.hp2 NA19043.hp2 NA19065.hp1 NA19079.hp2 NA19085.hp2 NA19240.hp1 NA20300.hp1	a0002 a0004 a0005 others(49): Show a0002 a0004 a0005 a0012 a0015 a0019 a0021 a0031 a0032 a0042 a0044 a0045 a0047 a0048 a0092 a0094 a0095 a0096 a0097 a0098 a0099 a0118 a0122 a0123 a0125 a0130 a0142 a0145 a0146 a0147 a0148 a0152 a0153 a0203 a0204 a0205 a0206 a0207 a0208 a0209 a0210 a0211 a0235 a0236 a0237 a0244 a0248 a0249 a0250 a0251 a0252 a0254	a0002c0014 a0004c0013 a0005c0129 others(51): Show a0002c0014 a0004c0013 a0005c0129 a0012c0116 a0012c0117 a0015c0012 a0019c0088 a0021c0015 a0031c0021 a0032c0184 a0032c0185 a0042c0044 a0044c0166 a0045c0103 a0047c0115 a0048c0114 a0092c0113 a0094c0107 a0095c0109 a0096c0108 a0097c0110 a0098c0112 a0099c0111 a0118c0130 a0122c0131 a0123c0126 a0125c0127 a0130c0132 a0142c0125 a0145c0165 a0146c0099 a0147c0100 a0148c0101 a0152c0035 a0153c0036 a0203c0180 a0204c0188 a0205c0189 a0206c0264 a0207c0186 a0208c0187 a0209c0183 a0210c0182 a0211c0181 a0235c0235 a0236c0267 a0237c0236 a0244c0053 a0248c0048 a0249c0047 a0250c0049 a0251c0050 a0252c0045 a0254c0031	a0002c0014t0001 a0002c0014t0003 a0004c0013t0001 others(52): Show a0002c0014t0001 a0002c0014t0003 a0004c0013t0001 a0005c0129t0003 a0012c0116t0005 a0012c0117t0001 a0015c0012t0002 a0019c0088t0001 a0021c0015t0002 a0031c0021t0001 a0032c0184t0004 a0032c0185t0002 a0042c0044t0004 a0044c0166t0002 a0045c0103t0003 a0047c0115t0003 a0048c0114t0007 a0092c0113t0005 a0094c0107t0004 a0095c0109t0003 a0096c0108t0001 a0097c0110t0003 a0098c0112t0002 a0099c0111t0001 a0118c0130t0002 a0122c0131t0002 a0123c0126t0005 a0125c0127t0002 a0130c0132t0004 a0142c0125t0003 a0145c0165t0001 a0146c0099t0001 a0147c0100t0008 a0148c0101t0002 a0152c0035t0007 a0153c0036t0002 a0203c0180t0005 a0204c0188t0005 a0205c0189t0010 a0206c0264t0007 a0207c0186t0005 a0208c0187t0002 a0209c0183t0002 a0210c0182t0004 a0211c0181t0006 a0235c0235t0002 a0236c0267t0003 a0237c0236t0001 a0244c0053t0001 a0248c0048t0001 a0249c0047t0001 a0250c0049t0002 a0251c0050t0002 a0252c0045t0004 a0254c0031t0006	a0002c0014t0001g0151 a0002c0014t0003g0123 a0004c0013t0001g0208 others(56): Show a0002c0014t0001g0151 a0002c0014t0003g0123 a0004c0013t0001g0208 a0004c0013t0001g0250 a0005c0129t0003g0209 a0012c0116t0005g0134 a0012c0117t0001g0174 a0015c0012t0002g0023 a0015c0012t0002g0025 a0019c0088t0001g0077 a0021c0015t0002g0063 a0021c0015t0002g0064 a0031c0021t0001g0033 a0031c0021t0001g0163 a0032c0184t0004g0288 a0032c0185t0002g0168 a0042c0044t0004g0268 a0044c0166t0002g0061 a0045c0103t0003g0289 a0047c0115t0003g0024 a0048c0114t0007g0167 a0092c0113t0005g0014 a0094c0107t0004g0115 a0095c0109t0003g0243 a0096c0108t0001g0206 a0097c0110t0003g0068 a0098c0112t0002g0193 a0099c0111t0001g0241 a0118c0130t0002g0245 a0122c0131t0002g0263 a0123c0126t0005g0004 a0125c0127t0002g0299 a0130c0132t0004g0062 a0142c0125t0003g0237 a0145c0165t0001g0001 a0146c0099t0001g0242 a0147c0100t0008g0029 a0148c0101t0002g0142 a0152c0035t0007g0032 a0153c0036t0002g0036 a0203c0180t0005g0148 a0204c0188t0005g0196 a0205c0189t0010g0046 a0206c0264t0007g0274 a0207c0186t0005g0044 a0208c0187t0002g0051 a0209c0183t0002g0058 a0210c0182t0004g0286 a0211c0181t0006g0287 a0235c0235t0002g0070 a0236c0267t0003g0262 a0237c0236t0001g0106 a0244c0053t0001g0075 a0248c0048t0001g0270 a0249c0047t0001g0221 a0250c0049t0002g0057 a0251c0050t0002g0194 a0252c0045t0004g0164 a0254c0031t0006g0285	59	310	0.1903	-19	c.158 others(36): Show c.1585-471_1585-453delATGATGGGTGGGTGGATGG	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	12/66			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11494060	GGGGCGGG others(12): Show GGGGCGGGGCAGTGGCGTGA	G G	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0084 a0084	a0084c0076 a0084c0076	a0084c0076t0002 a0084c0076t0002	a0084c0076t0002g0135 a0084c0076t0002g0135	1	310	0.0032	-19	c.143 others(36): Show c.1432-283_1432-265delTCACGCCACTGCCCCGCCC	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	11/66			chr16	TogoVar
LOXL4_chr10_98242690_98273194	98258591	AGGCATCT others(12): Show AGGCATCTGTACCACCTCAC	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0117 a0001c0004t0001g0117	1	438	0.0023	-19	c.921 others(34): Show c.921+399_921+417delGTGAGGTGGTACAGATGCC	LOXL4	ENSG00000138131.4	transcript	ENST00000260702.4	protein_coding	6/14			chr10	TogoVar
LOXL4_chr10_98242690_98273194	98271181	GGCCTCGG others(12): Show GGCCTCGGGTAAGTTATTTT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG00408.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0169 a0002c0001t0001g0169	1	438	0.0023	-19	c.-31 others(30): Show c.-3101_-3083delAAAATAACTTACCCGAGGC	LOXL4	ENSG00000138131.4	transcript	ENST00000260702.4	protein_coding		2988		chr10	TogoVar
LPAR1_chr9_110868263_111043470	110903914	GCACTGAG others(12): Show GCACTGAGAGAGCAACAACA	G G	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0126 a0001c0001t0001g0126	1	302	0.0033	-19	c.794 others(38): Show c.794-28211_794-28193delTGTTGTTGCTCTCTCAGTG	LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	5/5			chr9	TogoVar
LPIN2_chr18_2911999_3018144	2958142	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAACAAC	A A	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03130.hp1 HG03041.hp1 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0080 a0001c0001t0013 a0001c0001t0080	a0001c0001t0013g0136 a0001c0001t0080g0135 a0001c0001t0013g0136 a0001c0001t0080g0135	2	380	0.0053	-19	c.192 others(36): Show c.192+2488_192+2506delGTTGTTTTTTTTTTTTTTT	LPIN2	ENSG00000101577.11	transcript	ENST00000677752.1	protein_coding	2/19			chr18	TogoVar
LPIN3_chr20_41335821_41365582	41359079	CTGTCCTG others(12): Show CTGTCCTGGGGCAATTAGCT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18972.hp2 NA19004.hp1 NA19004.hp2 NA18972.hp2 NA19004.hp1 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0035 a0001c0001t0021 a0001c0001t0035	a0001c0001t0021g0012 a0001c0001t0035g0001 a0001c0001t0021g0012 a0001c0001t0035g0001	3	404	0.0074	-19	c.21 others(28): Show c.218_*236delCTGGGGCAATTAGCTTGTC	LPIN3	ENSG00000132793.12	transcript	ENST00000373257.8	protein_coding	20/20	218	INFO_REALIGN_3_PRIME	chr20	TogoVar
LPP_chr3_188149157_188895671	188755809	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG02886.hp2 NA20752.hp1 HG00673.hp2 HG02886.hp2 NA20752.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0003 a0001c0001 a0001c0005 a0002c0003	a0001c0001t0057 a0001c0005t0031 a0002c0003t0056 a0001c0001t0057 a0001c0005t0031 a0002c0003t0056	a0001c0001t0057g0006 a0001c0005t0031g0003 a0002c0003t0056g0016 a0001c0001t0057g0006 a0001c0005t0031g0003 a0002c0003t0056g0016	3	76	0.0395	-19	c.124 others(38): Show c.1241-4266_1241-4248delAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	8/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188785009	CCATCATA others(12): Show CCATCATATATATATTCCAT	C C	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0063 a0001c0005t0063	a0001c0005t0063g0022 a0001c0005t0063g0022	1	76	0.0132	-19	c.141 others(40): Show c.1410+24750_1410+24768delCATATATATATTCCATCAT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150264905	GGTGCCCC others(12): Show GGTGCCCCAACAAAACAACA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0009 a0003c0004t0009	a0003c0004t0009g0157 a0003c0004t0009g0157	1	180	0.0056	-19	c.79 others(28): Show c.798_*816delTGTTGTTTTGTTGGGGCAC	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	57/57	798		chr4	TogoVar
LRBA_chr4_150259435_151020284	150559844	ATAATAAT others(12): Show ATAATAATATATAATTATAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02622.hp2 HG02630.hp2 others(2): Show HG02280.hp1 HG02622.hp2 HG02630.hp2 HG02976.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0014 a0001c0001 a0001c0014	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0014t0003	a0001c0001t0001g0051 a0001c0001t0003g0052 a0001c0001t0007g0050 others(2): Show a0001c0001t0001g0051 a0001c0001t0003g0052 a0001c0001t0007g0050 a0001c0014t0003g0053 a0001c0014t0003g0054	5	180	0.0278	-19	c.633 others(40): Show c.6330+28185_6330+28203delATATAATTATATATTATTA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	40/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150655720	ATTTCACT others(12): Show ATTTCACTCAGGACAGAAAC	A A	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0028 a0001c0001t0002g0028	1	180	0.0056	-19	c.592 others(40): Show c.5921+27812_5921+27830delGTTTCTGTCCTGAGTGAAA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46657500	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02818.hp1 HG02258.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0008 a0001c0001t0001 a0001c0004t0008	a0001c0001t0001g0253 a0001c0004t0008g0233 a0001c0001t0001g0253 a0001c0004t0008g0233	2	274	0.0073	-19	c.452 others(36): Show c.452+7179_452+7197delTTTTTTTTTTTTTTTTTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115221199	AAAAAAAA others(12): Show AAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0150 a0001c0001t0002g0150	1	238	0.0042	-19	c.349 others(38): Show c.349+12475_349+12493delATATATATTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH3_chr3_197786254_197893436	197886677	CACCTGTA others(12): Show CACCTGTAATCCCAGCTACT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0059 a0001c0004t0059	a0001c0004t0059g0002 a0001c0004t0059g0002	1	292	0.0034	-19	c.30 others(30): Show c.3012_*3030delACCTGTAATCCCAGCTACT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	21/21	3012		chr3	TogoVar
LRCH4_chr7_100569011_100591129	100570843	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG02895.hp1 HG02965.hp2 others(9): Show HG01243.hp1 HG02895.hp1 HG02965.hp2 HG02970.hp1 HG03225.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG06807.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0014 a0003c0005 a0001c0001 a0001c0014 a0003c0005	a0001c0001t0003 a0001c0014t0003 a0003c0005t0003 a0001c0001t0003 a0001c0014t0003 a0003c0005t0003	a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0003g0170 others(4): Show a0001c0001t0003g0018 a0001c0001t0003g0028 a0001c0001t0003g0170 a0001c0001t0003g0171 a0001c0014t0003g0057 a0003c0005t0003g0031 a0003c0005t0003g0076	12	370	0.0324	-19	c.42 others(30): Show c.4245_*4263delTTTTTTTTTTTTTTTTTTT	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding		3167		chr7	TogoVar
LRCH4_chr7_100569011_100591129	100580585	CACAGACC others(12): Show CACAGACCTAAACACACACA	C C	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0028 a0001c0007t0028	a0001c0007t0028g0052 a0001c0007t0028g0052	1	370	0.0027	-19	c.598 others(36): Show c.598+1173_598+1191delTGTGTGTGTTTAGGTCTGT	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding	4/17			chr7	TogoVar
LRFN2_chr6_40386591_40592364	40576309	TTGGAGAG others(12): Show TTGGAGAGAGACAAGACAGA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00735.hp1 HG01169.hp1 others(16): Show HG00280.hp2 HG00735.hp1 HG01169.hp1 HG01978.hp2 HG02155.hp2 HG02809.hp1 HG03130.hp2 HG03225.hp2 HG03486.hp2 NA18522.hp2 NA18983.hp2 NA18993.hp2 NA18995.hp1 NA19004.hp1 NA19054.hp1 NA19056.hp2 NA19070.hp1 NA20300.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0002c0005	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0002t0002 a0001c0002t0006 a0001c0003t0002 a0001c0004t0001 a0002c0005t0005	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0011 others(16): Show a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0024 a0001c0001t0001g0176 a0001c0001t0004g0018 a0001c0002t0001g0010 a0001c0002t0001g0015 a0001c0002t0001g0031 a0001c0002t0002g0169 a0001c0002t0006g0016 a0001c0003t0002g0017 a0001c0003t0002g0032 a0001c0004t0001g0007 a0002c0005t0005g0033 a0002c0005t0005g0034	19	228	0.0833	-19	c.-19 others(38): Show c.-19+10613_-19+10631delTCTGTCTTGTCTCTCTCCA	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRIG1_chr3_66373797_66506022	66443328	AGGGGCGG others(12): Show AGGGGCGGGGGATGAGTGAG	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01346.hp1 HG01515.hp2 others(7): Show HG01167.hp2 HG01346.hp1 HG01515.hp2 HG02148.hp2 HG02622.hp2 HG02735.hp1 HG02886.hp1 HG03669.hp1 HG06807.hp2 NA20805.hp1	a0001 a0008 a0009 a0001 a0008 a0009	a0001c0002 a0008c0006 a0009c0013 a0001c0002 a0008c0006 a0009c0013	a0001c0002t0001 a0001c0002t0031 a0008c0006t0005 others(2): Show a0001c0002t0001 a0001c0002t0031 a0008c0006t0005 a0008c0006t0020 a0009c0013t0004	a0001c0002t0001g0063 a0001c0002t0001g0065 a0001c0002t0001g0070 others(7): Show a0001c0002t0001g0063 a0001c0002t0001g0065 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0115 a0001c0002t0001g0159 a0001c0002t0031g0069 a0008c0006t0005g0230 a0008c0006t0020g0005 a0009c0013t0004g0214	10	264	0.0379	-19	c.365 others(36): Show c.365+8212_365+8230delCTCACTCATCCCCCGCCCC	LRIG1	ENSG00000144749.14	transcript	ENST00000273261.8	protein_coding	3/18			chr3	TogoVar
LRMDA_chr10_75426624_76565168	75590726	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03195.hp1 HG02145.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0003 a0001c0001t0001 a0001c0002t0003	a0001c0001t0001g0029 a0001c0002t0003g0030 a0001c0001t0001g0029 a0001c0002t0003g0030	2	46	0.0435	-19	c.131 others(40): Show c.131+152256_131+152274delTTTTTTTTTTTTTTTTTTT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP12_chr8_104484236_104594258	104514400	GATAAAAC others(12): Show GATAAAACAGATAAAACTTA	G G	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0268 a0001c0001t0006g0268	1	318	0.0031	-19	c.137 others(36): Show c.137-5345_137-5327delTAAGTTTTATCTGTTTTAT	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	2/6			chr8	TogoVar
LRP1B_chr2_140226423_142136016	140256449	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0024 a0001c0024	a0001c0024t0005 a0001c0024t0005	a0001c0024t0005g0009 a0001c0024t0005g0009	1	28	0.0357	-19	c.132 others(40): Show c.13248-9306_13248-9288delAAAAAAAAAAAAAAAAAAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	86/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140705521	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01884.hp1 HG01884.hp2 others(5): Show HG01261.hp2 HG01884.hp1 HG01884.hp2 HG02145.hp2 HG02486.hp1 HG02559.hp2 HG02922.hp1 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0005 a0001c0014 a0001c0015 others(5): Show a0001c0005 a0001c0014 a0001c0015 a0001c0016 a0001c0019 a0001c0025 a0001c0026 a0002c0004	a0001c0005t0008 a0001c0014t0004 a0001c0015t0009 others(5): Show a0001c0005t0008 a0001c0014t0004 a0001c0015t0009 a0001c0016t0001 a0001c0019t0001 a0001c0025t0005 a0001c0026t0001 a0002c0004t0004	a0001c0005t0008g0010 a0001c0014t0004g0002 a0001c0015t0009g0017 others(5): Show a0001c0005t0008g0010 a0001c0014t0004g0002 a0001c0015t0009g0017 a0001c0016t0001g0011 a0001c0019t0001g0016 a0001c0025t0005g0018 a0001c0026t0001g0025 a0002c0004t0004g0006	8	28	0.2857	-19	c.602 others(38): Show c.6024-2987_6024-2969delTTTTTTTTTTTTTTTTTTT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	37/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140970712	ACCTTTTT others(12): Show ACCTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02922.hp1 NA19240.hp2 HG02630.hp1 HG02922.hp1 NA19240.hp2	a0001 a0001	a0001c0005 a0001c0010 a0001c0013 a0001c0005 a0001c0010 a0001c0013	a0001c0005t0008 a0001c0010t0011 a0001c0013t0002 a0001c0005t0008 a0001c0010t0011 a0001c0013t0002	a0001c0005t0008g0010 a0001c0010t0011g0028 a0001c0013t0002g0012 a0001c0005t0008g0010 a0001c0010t0011g0028 a0001c0013t0002g0012	3	28	0.1071	-19	c.288 others(40): Show c.2887+11429_2887+11447delAAAAAAAAAAAAAAAAAGG	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	18/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141743486	CTTTTTTT others(12): Show CTTTTTTTTTTTTTTCTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02451.hp1 HG02451.hp2 others(4): Show HG02145.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02723.hp1 HG02922.hp1 HG03225.hp2	a0001 a0005 a0001 a0005	a0001c0005 a0001c0011 a0001c0012 others(4): Show a0001c0005 a0001c0011 a0001c0012 a0001c0014 a0001c0018 a0001c0019 a0005c0003	a0001c0005t0008 a0001c0011t0001 a0001c0012t0003 others(4): Show a0001c0005t0008 a0001c0011t0001 a0001c0012t0003 a0001c0014t0004 a0001c0018t0002 a0001c0019t0001 a0005c0003t0002	a0001c0005t0008g0010 a0001c0011t0001g0014 a0001c0012t0003g0005 others(4): Show a0001c0005t0008g0010 a0001c0011t0001g0014 a0001c0012t0003g0005 a0001c0014t0004g0002 a0001c0018t0002g0013 a0001c0019t0001g0016 a0005c0003t0002g0027	7	28	0.2500	-19	c.205 others(38): Show c.205+66774_205+66792delAAAAGAAAAAAAAAAAAAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP2_chr2_169122109_169367534	169231293	CAGAAAGA others(12): Show CAGAAAGAAAAAAAAAAGAA	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01255.hp1 HG01261.hp1 others(7): Show HG01099.hp1 HG01255.hp1 HG01261.hp1 HG01891.hp1 HG02055.hp1 HG02615.hp2 HG02723.hp2 HG03471.hp1 NA18522.hp2 NA19030.hp1	a0003 a0005 a0008 others(3): Show a0003 a0005 a0008 a0036 a0063 a0064	a0003c0016 a0003c0043 a0003c0089 others(6): Show a0003c0016 a0003c0043 a0003c0089 a0005c0115 a0005c0160 a0008c0044 a0036c0045 a0063c0161 a0064c0116	a0003c0016t0004 a0003c0043t0018 a0003c0089t0002 others(6): Show a0003c0016t0004 a0003c0043t0018 a0003c0089t0002 a0005c0115t0008 a0005c0160t0008 a0008c0044t0003 a0036c0045t0007 a0063c0161t0016 a0064c0116t0007	a0003c0016t0004g0054 a0003c0016t0004g0126 a0003c0043t0018g0150 others(7): Show a0003c0016t0004g0054 a0003c0016t0004g0126 a0003c0043t0018g0150 a0003c0089t0002g0140 a0005c0115t0008g0144 a0005c0160t0008g0169 a0008c0044t0003g0151 a0036c0045t0007g0077 a0063c0161t0016g0242 a0064c0116t0007g0147	10	250	0.0400	-19	c.522 others(36): Show c.5227+402_5227+420delTTCTTTTTTTTTTCTTTCT	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	31/78			chr2	TogoVar
LRP2_chr2_169122109_169367534	169338385	AAAGAAAG others(12): Show AAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA18941.hp2 NA18961.hp1 NA18979.hp1 others(1): Show NA18941.hp2 NA18961.hp1 NA18979.hp1 NA19060.hp2	a0002 a0005 a0007 a0002 a0005 a0007	a0002c0130 a0002c0132 a0005c0131 others(1): Show a0002c0130 a0002c0132 a0005c0131 a0007c0015	a0002c0130t0003 a0002c0132t0003 a0005c0131t0003 others(1): Show a0002c0130t0003 a0002c0132t0003 a0005c0131t0003 a0007c0015t0002	a0002c0130t0003g0177 a0002c0132t0003g0176 a0005c0131t0003g0157 others(1): Show a0002c0130t0003g0177 a0002c0132t0003g0176 a0005c0131t0003g0157 a0007c0015t0002g0186	4	250	0.0160	-19	c.80- others(36): Show c.80-17520_80-17502delCTTTCTTTCTTTCTTTCTT	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRP5_chr11_68307591_68454275	68443564	TATATATA others(12): Show TATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0180 a0001c0004t0001g0180	1	212	0.0047	-19	c.448 others(38): Show c.4489-2871_4489-2853delATATATATATATATATATA	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	21/22			chr11	TogoVar
LRP6_chr12_12111025_12272044	12199964	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02572.hp2 HG02717.hp2 others(1): Show HG02280.hp2 HG02572.hp2 HG02717.hp2 NA19030.hp2	a0001 a0001	a0001c0003 a0001c0008 a0001c0014 a0001c0003 a0001c0008 a0001c0014	a0001c0003t0038 a0001c0008t0077 a0001c0014t0054 a0001c0003t0038 a0001c0008t0077 a0001c0014t0054	a0001c0003t0038g0193 a0001c0003t0038g0194 a0001c0008t0077g0195 others(1): Show a0001c0003t0038g0193 a0001c0003t0038g0194 a0001c0008t0077g0195 a0001c0014t0054g0229	4	262	0.0153	-19	c.647 others(36): Show c.647+3220_647+3238delTTTTTTTTTTTTTTTTTTT	LRP6	ENSG00000070018.9	transcript	ENST00000261349.9	protein_coding	3/22			chr12	TogoVar
LRP8_chr1_53237364_53333070	53326589	CGGTTCAG others(12): Show CGGTTCAGTCTCCCCAGCAT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01433.hp1 HG02071.hp2 others(13): Show HG01167.hp1 HG01433.hp1 HG02071.hp2 HG02809.hp2 HG02965.hp2 HG03098.hp1 HG03139.hp1 HG03225.hp2 HG03453.hp2 HG03486.hp2 NA18943.hp1 NA18983.hp2 NA18997.hp1 NA19030.hp1 NA19043.hp1 NA19240.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0001c0004 a0001c0006 others(3): Show a0001c0001 a0001c0004 a0001c0006 a0001c0023 a0001c0025 a0006c0010	a0001c0001t0012 a0001c0001t0032 a0001c0001t0033 others(8): Show a0001c0001t0012 a0001c0001t0032 a0001c0001t0033 a0001c0001t0038 a0001c0004t0019 a0001c0004t0034 a0001c0004t0037 a0001c0006t0036 a0001c0023t0035 a0001c0025t0039 a0006c0010t0020	a0001c0001t0012g0013 a0001c0001t0012g0016 a0001c0001t0012g0018 others(13): Show a0001c0001t0012g0013 a0001c0001t0012g0016 a0001c0001t0012g0018 a0001c0001t0012g0023 a0001c0001t0032g0014 a0001c0001t0033g0015 a0001c0001t0038g0020 a0001c0004t0019g0019 a0001c0004t0019g0022 a0001c0004t0034g0017 a0001c0004t0037g0025 a0001c0006t0036g0012 a0001c0023t0035g0024 a0001c0025t0039g0021 a0006c0010t0020g0010 a0006c0010t0020g0011	16	296	0.0541	-19	c.244 others(34): Show c.244+265_244+283delATGCTGGGGAGACTGAACC	LRP8	ENSG00000157193.18	transcript	ENST00000306052.12	protein_coding	2/18			chr1	TogoVar
LRR1_chr14_49593940_49619672	49608406	ATTTTTTT others(12): Show ATTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0043	1	312	0.0032	-19	c.100 others(36): Show c.1004+308_1004+326delTTTTTTTTTTTTTTTTTTT	LRR1	ENSG00000165501.17	transcript	ENST00000298288.11	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC27_chr10_132327193_132386508	132384983	GGGAGTGT others(12): Show GGGAGTGTCCAGGCCTTCCA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	290	0.0035	-19	c.97 others(30): Show c.9742_*9760delGGAGTGTCCAGGCCTTCCA	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding		3476		chr10	TogoVar
LRRC28_chr15_99246481_99395729	99293593	CAAAAAAA others(12): Show CAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0006 a0001c0001t0013g0006	1	332	0.0030	-19	c.385 others(36): Show c.385+5664_385+5682delAAAAAAAAAAAAAAAAAAA	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC28_chr15_99246481_99395729	99328896	GGCCTTCA others(12): Show GGCCTTCAGACTGGGACTGA	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp2 NA19030.hp1 HG02451.hp2 HG02922.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0078 a0001c0001t0089 a0001c0001t0202 a0001c0001t0078 a0001c0001t0089 a0001c0001t0202	a0001c0001t0078g0205 a0001c0001t0089g0204 a0001c0001t0202g0207 a0001c0001t0078g0205 a0001c0001t0089g0204 a0001c0001t0202g0207	3	332	0.0090	-19	c.386 others(36): Show c.386-5023_386-5005delTTCAGACTGGGACTGAGCC	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC37B_chr17_32002383_32058487	32039478	AAATATAT others(12): Show AAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0217 a0002c0002t0002g0217	1	242	0.0041	-19	c.187 others(38): Show c.1877+3841_1877+3859delATATATATATATATATATA	LRRC37B	ENSG00000185158.13	transcript	ENST00000543378.7	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr17	TogoVar
LRRC3B_chr3_26617772_26715776	26646598	TAAAAAAA others(12): Show TAAAAAAAAAAAAAAAAAAA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00423.hp2 HG00558.hp1 others(67): Show HG00140.hp1 HG00423.hp2 HG00558.hp1 HG00621.hp2 HG00733.hp2 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01109.hp2 HG01167.hp2 HG01192.hp2 HG01255.hp1 HG01257.hp1 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01361.hp2 HG01496.hp2 HG01515.hp2 HG01516.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp1 HG02004.hp1 HG02040.hp1 HG02071.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02148.hp2 HG02451.hp2 HG02647.hp2 HG02735.hp2 HG02738.hp2 HG02886.hp2 HG03130.hp2 HG03471.hp1 HG03492.hp1 HG03688.hp2 HG03704.hp2 HG04199.hp2 NA18747.hp1 NA18942.hp2 NA18948.hp2 NA18953.hp1 NA18962.hp1 NA18971.hp2 NA18972.hp1 NA18977.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp2 NA18984.hp1 NA18989.hp1 NA18992.hp1 NA18999.hp2 NA19009.hp1 NA19011.hp2 NA19060.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0002t0002 a0001c0003t0001 a0001c0004t0001	a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0041 others(67): Show a0001c0001t0001g0033 a0001c0001t0001g0035 a0001c0001t0001g0041 a0001c0001t0001g0071 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0096 a0001c0001t0001g0110 a0001c0001t0001g0147 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0165 a0001c0001t0001g0166 a0001c0001t0001g0168 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0177 a0001c0001t0001g0179 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0205 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0242 a0001c0001t0001g0254 a0001c0001t0001g0314 a0001c0001t0002g0200 a0001c0001t0002g0323 a0001c0001t0002g0325 a0001c0001t0006g0092 a0001c0001t0006g0094 a0001c0001t0007g0146 a0001c0001t0007g0150 a0001c0002t0002g0095 a0001c0002t0002g0140 a0001c0002t0002g0144 a0001c0002t0002g0164 a0001c0002t0002g0171 a0001c0002t0002g0202 a0001c0002t0002g0227 a0001c0002t0002g0273 a0001c0003t0001g0148 a0001c0003t0001g0206 a0001c0004t0001g0198	70	370	0.1892	-19	c.-16 others(40): Show c.-161+23381_-161+23399delAAAAAAAAAAAAAAAAAAA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3C_chr17_39922732_39949999	39940749	TTCTTTTT others(12): Show TTCTTTTTTTTGAGACAGGG	T T	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03041.hp1 NA19030.hp1 HG02970.hp1 HG03041.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0052	3	404	0.0074	-19	c.-81 others(34): Show c.-81-689_-81-671delTTTTTTGAGACAGGGTCTT	LRRC3C	ENSG00000204913.7	transcript	ENST00000377924.6	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr17	TogoVar
LRRC3C_chr17_39922732_39949999	39946973	TCTGCCCT others(12): Show TCTGCCCTTCTGCCTGGGAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	404	0.0025	-19	c.22 others(30): Show c.2240_*2258delCTGCCCTTCTGCCTGGGAC	LRRC3C	ENSG00000204913.7	transcript	ENST00000377924.6	protein_coding		1975		chr17	TogoVar
LRRC4B_chr19_50511892_50573435	50520232	AAAAAAAA others(12): Show AAAAAAAAAAAAAAAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp2 HG00639.hp1 others(27): Show HG00323.hp1 HG00323.hp2 HG00639.hp1 HG01109.hp1 HG01167.hp2 HG01358.hp1 HG01433.hp1 HG01978.hp1 HG02080.hp2 HG02602.hp1 HG02683.hp1 HG02738.hp2 HG03017.hp1 HG03239.hp1 HG03516.hp2 HG03654.hp2 HG03688.hp2 HG03831.hp2 HG03942.hp2 HG04115.hp1 NA18942.hp2 NA18944.hp1 NA18966.hp1 NA18973.hp1 NA18979.hp1 NA18979.hp2 NA18999.hp2 NA19060.hp2 NA19081.hp2 NA19088.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0002c0004	a0001c0001t0001 a0001c0001t0007 a0001c0003t0001 others(3): Show a0001c0001t0001 a0001c0001t0007 a0001c0003t0001 a0002c0002t0001 a0002c0002t0003 a0002c0004t0001	a0001c0001t0001g0042 a0001c0001t0001g0048 a0001c0001t0001g0054 others(27): Show a0001c0001t0001g0042 a0001c0001t0001g0048 a0001c0001t0001g0054 a0001c0001t0001g0109 a0001c0001t0001g0196 a0001c0001t0001g0202 a0001c0001t0001g0246 a0001c0001t0001g0248 a0001c0001t0007g0251 a0001c0003t0001g0062 a0001c0003t0001g0314 a0002c0002t0001g0023 a0002c0002t0001g0072 a0002c0002t0001g0078 a0002c0002t0001g0123 a0002c0002t0001g0124 a0002c0002t0001g0139 a0002c0002t0001g0181 a0002c0002t0001g0250 a0002c0002t0001g0262 a0002c0002t0001g0309 a0002c0002t0001g0324 a0002c0002t0003g0357 a0002c0004t0001g0120 a0002c0004t0001g0130 a0002c0004t0001g0157 a0002c0004t0001g0199 a0002c0004t0001g0209 a0002c0004t0001g0214 a0002c0004t0001g0298	30	360	0.0833	-19	c.298 others(34): Show c.298-836_298-818delCTTCTTTTTTTTTTTTTTT	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40665320	AAAAAAAT others(12): Show AAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0030 a0001c0002t0001g0030	1	48	0.0208	-19	c.-40 others(40): Show c.-406-17061_-406-17043delATATATATATATATTTTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40665322	AAAAATAT others(12): Show AAAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	48	0.0208	-19	c.-40 others(40): Show c.-406-17063_-406-17045delATATATATATATATATTTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar

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