Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
AGAP1_chr2_235489043_236136793	235573016	TTC TTC	T T	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp2 NA19030.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0003 a0001c0005t0040 a0001c0001t0003 a0001c0005t0040	a0001c0001t0003g0036 a0001c0005t0040g0006 a0001c0001t0003g0036 a0001c0005t0040g0006	2	98	0.0204	-2	c.163 others(21): Show c.163+78169_163+78170delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235573025	TTC TTC	T T	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01884.hp2 HG02280.hp2 others(9): Show HG01192.hp2 HG01884.hp2 HG02280.hp2 HG02723.hp2 HG02809.hp2 HG03453.hp1 HG03579.hp2 NA18522.hp1 NA19030.hp1 NA19030.hp2 NA20300.hp1 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0002c0004 a0003c0015	a0001c0001t0003 a0001c0001t0009 a0001c0001t0024 others(8): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0024 a0001c0002t0013 a0001c0002t0032 a0001c0003t0012 a0001c0005t0004 a0001c0005t0040 a0001c0010t0001 a0002c0004t0006 a0003c0015t0002	a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0009g0074 others(9): Show a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0009g0074 a0001c0001t0024g0077 a0001c0002t0013g0035 a0001c0002t0032g0051 a0001c0003t0012g0066 a0001c0005t0004g0058 a0001c0005t0040g0006 a0001c0010t0001g0032 a0002c0004t0006g0042 a0003c0015t0002g0075	12	98	0.1225	-2	c.163 others(21): Show c.163+78178_163+78179delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235573034	TTC TTC	T T	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01192.hp2 HG01884.hp2 others(22): Show HG01168.hp1 HG01192.hp2 HG01884.hp2 HG02135.hp1 HG02280.hp2 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02976.hp2 HG03041.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03453.hp1 HG03486.hp2 HG03579.hp2 HG04199.hp1 NA18522.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0002c0004 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 others(21): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0009 a0001c0001t0011 a0001c0001t0024 a0001c0001t0027 a0001c0002t0001 a0001c0002t0013 a0001c0002t0032 a0001c0003t0002 a0001c0003t0003 a0001c0003t0012 a0001c0003t0022 a0001c0003t0047 a0001c0005t0004 a0001c0005t0031 a0001c0005t0040 a0001c0006t0001 a0001c0006t0006 a0001c0008t0001 a0001c0010t0001 a0002c0004t0006 a0002c0004t0029 a0003c0015t0002	a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 others(22): Show a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0009g0074 a0001c0001t0011g0098 a0001c0001t0024g0077 a0001c0001t0027g0062 a0001c0002t0001g0068 a0001c0002t0013g0035 a0001c0002t0032g0051 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0012g0066 a0001c0003t0022g0055 a0001c0003t0047g0033 a0001c0005t0004g0058 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0008t0001g0061 a0001c0010t0001g0032 a0002c0004t0006g0042 a0002c0004t0029g0083 a0003c0015t0002g0075	25	98	0.2551	-2	c.163 others(21): Show c.163+78187_163+78188delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235573043	TTC TTC	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01168.hp1 HG01192.hp2 others(27): Show HG01106.hp2 HG01168.hp1 HG01192.hp2 HG01358.hp1 HG01884.hp2 HG02080.hp2 HG02135.hp1 HG02145.hp1 HG02280.hp2 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02976.hp2 HG03041.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03453.hp1 HG03486.hp2 HG03579.hp2 HG03831.hp1 HG04199.hp1 NA18522.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0002c0004 a0002c0007 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(25): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 a0001c0001t0024 a0001c0001t0027 a0001c0002t0001 a0001c0002t0013 a0001c0002t0032 a0001c0003t0002 a0001c0003t0003 a0001c0003t0012 a0001c0003t0022 a0001c0003t0047 a0001c0005t0004 a0001c0005t0031 a0001c0005t0040 a0001c0006t0001 a0001c0006t0006 a0001c0008t0001 a0001c0008t0028 a0001c0010t0001 a0002c0004t0006 a0002c0004t0029 a0002c0004t0045 a0002c0007t0005 a0003c0015t0002	a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 others(27): Show a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0005g0012 a0001c0001t0009g0074 a0001c0001t0011g0098 a0001c0001t0024g0077 a0001c0001t0027g0062 a0001c0002t0001g0030 a0001c0002t0001g0068 a0001c0002t0013g0035 a0001c0002t0032g0051 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0012g0066 a0001c0003t0022g0055 a0001c0003t0047g0033 a0001c0005t0004g0058 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0010t0001g0032 a0002c0004t0006g0042 a0002c0004t0029g0083 a0002c0004t0045g0039 a0002c0007t0005g0026 a0003c0015t0002g0075	30	98	0.3061	-2	c.163 others(21): Show c.163+78196_163+78197delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235573051	CTT CTT	C C	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02717.hp2 HG03041.hp2 others(2): Show HG02647.hp2 HG02717.hp2 HG03041.hp2 HG03453.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0001c0014	a0001c0001t0003 a0001c0001t0019 a0001c0003t0025 others(2): Show a0001c0001t0003 a0001c0001t0019 a0001c0003t0025 a0001c0005t0004 a0001c0014t0016	a0001c0001t0003g0090 a0001c0001t0019g0065 a0001c0003t0025g0015 others(2): Show a0001c0001t0003g0090 a0001c0001t0019g0065 a0001c0003t0025g0015 a0001c0005t0004g0088 a0001c0014t0016g0048	5	98	0.0510	-2	c.163 others(21): Show c.163+78203_163+78204delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235573052	TTC TTC	T T	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01168.hp1 HG01192.hp2 others(40): Show HG01106.hp2 HG01168.hp1 HG01192.hp2 HG01358.hp1 HG01884.hp1 HG01884.hp2 HG02080.hp2 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02280.hp1 HG02280.hp2 HG02615.hp1 HG02622.hp1 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03453.hp1 HG03471.hp1 HG03486.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03831.hp1 HG04199.hp1 NA18522.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0010 a0001c0012 a0002c0004 a0002c0007 a0002c0013 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(35): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0024 a0001c0001t0026 a0001c0001t0027 a0001c0001t0044 a0001c0001t0048 a0001c0002t0001 a0001c0002t0013 a0001c0002t0014 a0001c0002t0032 a0001c0002t0038 a0001c0003t0002 a0001c0003t0003 a0001c0003t0012 a0001c0003t0021 a0001c0003t0022 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0031 a0001c0005t0040 a0001c0006t0001 a0001c0006t0006 a0001c0008t0001 a0001c0008t0028 a0001c0010t0001 a0001c0012t0009 a0002c0004t0006 a0002c0004t0029 a0002c0004t0045 a0002c0007t0005 a0002c0013t0041 a0003c0015t0002	a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0003g0034 others(40): Show a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0005g0007 a0001c0001t0005g0012 a0001c0001t0007g0008 a0001c0001t0009g0074 a0001c0001t0011g0020 a0001c0001t0011g0098 a0001c0001t0024g0077 a0001c0001t0026g0095 a0001c0001t0027g0062 a0001c0001t0044g0041 a0001c0001t0048g0054 a0001c0002t0001g0030 a0001c0002t0001g0068 a0001c0002t0013g0035 a0001c0002t0014g0076 a0001c0002t0032g0051 a0001c0002t0038g0086 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0012g0066 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0010t0001g0032 a0001c0012t0009g0078 a0002c0004t0006g0042 a0002c0004t0029g0083 a0002c0004t0045g0039 a0002c0007t0005g0026 a0002c0013t0041g0081 a0003c0015t0002g0075	43	98	0.4388	-2	c.163 others(21): Show c.163+78205_163+78206delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235575582	CTG CTG	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01496.hp2 HG02083.hp1 others(17): Show HG00438.hp1 HG01496.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02145.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp2 HG02896.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03453.hp2 HG03486.hp1 HG03540.hp2 HG03831.hp2 NA18906.hp1 NA19240.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0014 a0001c0016 a0001c0018 a0002c0007	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(14): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0019 a0001c0002t0001 a0001c0002t0042 a0001c0003t0009 a0001c0003t0020 a0001c0003t0025 a0001c0005t0004 a0001c0005t0013 a0001c0014t0016 a0001c0016t0007 a0001c0018t0049 a0002c0007t0005 a0002c0007t0008	a0001c0001t0002g0049 a0001c0001t0003g0090 a0001c0001t0008g0069 others(17): Show a0001c0001t0002g0049 a0001c0001t0003g0090 a0001c0001t0008g0069 a0001c0001t0010g0003 a0001c0001t0010g0014 a0001c0001t0019g0065 a0001c0002t0001g0013 a0001c0002t0001g0027 a0001c0002t0001g0073 a0001c0002t0042g0067 a0001c0003t0009g0096 a0001c0003t0020g0053 a0001c0003t0025g0015 a0001c0005t0004g0088 a0001c0005t0013g0050 a0001c0014t0016g0048 a0001c0016t0007g0089 a0001c0018t0049g0080 a0002c0007t0005g0094 a0002c0007t0008g0011	20	98	0.2041	-2	c.163 others(21): Show c.163+80736_163+80737delTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235581134	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02145.hp2 HG03098.hp2 others(1): Show HG02109.hp1 HG02145.hp2 HG03098.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0018 a0001c0001 a0001c0003 a0001c0018	a0001c0001t0010 a0001c0003t0009 a0001c0003t0020 others(1): Show a0001c0001t0010 a0001c0003t0009 a0001c0003t0020 a0001c0018t0049	a0001c0001t0010g0003 a0001c0003t0009g0096 a0001c0003t0020g0053 others(1): Show a0001c0001t0010g0003 a0001c0003t0009g0096 a0001c0003t0020g0053 a0001c0018t0049g0080	4	98	0.0408	-2	c.163 others(21): Show c.163+86309_163+86310delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235581448	CTT CTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp1 HG02896.hp2 others(2): Show HG01884.hp1 HG02109.hp1 HG02896.hp2 HG03098.hp1 HG03195.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 a0001c0002 a0001c0003 a0001c0005	a0001c0002t0038 a0001c0002t0039 a0001c0003t0009 others(2): Show a0001c0002t0038 a0001c0002t0039 a0001c0003t0009 a0001c0003t0021 a0001c0005t0001	a0001c0002t0038g0086 a0001c0002t0039g0059 a0001c0003t0009g0096 others(2): Show a0001c0002t0038g0086 a0001c0002t0039g0059 a0001c0003t0009g0096 a0001c0003t0021g0023 a0001c0005t0001g0057	5	98	0.0510	-2	c.163 others(21): Show c.163+86614_163+86615delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235583553	ATT ATT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03139.hp2 HG03486.hp2 others(1): Show HG02809.hp1 HG03139.hp2 HG03486.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0011 a0001c0003t0022 a0001c0003t0047 others(1): Show a0001c0001t0011 a0001c0003t0022 a0001c0003t0047 a0001c0005t0031	a0001c0001t0011g0098 a0001c0003t0022g0055 a0001c0003t0047g0033 others(1): Show a0001c0001t0011g0098 a0001c0003t0022g0055 a0001c0003t0047g0033 a0001c0005t0031g0031	4	98	0.0408	-2	c.163 others(21): Show c.163+88724_163+88725delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235589192	TTG TTG	T T	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG03139.hp1 HG03579.hp2 others(2): Show HG02809.hp2 HG03139.hp1 HG03579.hp2 HG04199.hp1 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 a0001c0002 a0001c0003 a0001c0005	a0001c0002t0001 a0001c0002t0032 a0001c0003t0002 others(2): Show a0001c0002t0001 a0001c0002t0032 a0001c0003t0002 a0001c0003t0012 a0001c0005t0040	a0001c0002t0001g0068 a0001c0002t0032g0051 a0001c0003t0002g0005 others(2): Show a0001c0002t0001g0068 a0001c0002t0032g0051 a0001c0003t0002g0005 a0001c0003t0012g0066 a0001c0005t0040g0006	5	98	0.0510	-2	c.163 others(21): Show c.163+94345_163+94346delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235593425	CAG CAG	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02083.hp1 HG02083.hp2 others(19): Show HG00438.hp1 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02647.hp1 HG02647.hp2 HG02717.hp2 HG02809.hp1 HG02896.hp1 HG02976.hp1 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03831.hp2 NA18906.hp1 NA19011.hp2 NA19240.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0014 a0001c0016 a0001c0018 a0002c0007	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 others(17): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0002t0001 a0001c0002t0042 a0001c0003t0009 a0001c0003t0020 a0001c0003t0025 a0001c0003t0047 a0001c0005t0004 a0001c0005t0031 a0001c0006t0001 a0001c0014t0016 a0001c0016t0007 a0001c0018t0049 a0002c0007t0005 a0002c0007t0008	a0001c0001t0002g0049 a0001c0001t0003g0090 a0001c0001t0008g0069 others(19): Show a0001c0001t0002g0049 a0001c0001t0003g0090 a0001c0001t0008g0069 a0001c0001t0010g0014 a0001c0001t0011g0098 a0001c0001t0019g0065 a0001c0002t0001g0013 a0001c0002t0001g0027 a0001c0002t0001g0073 a0001c0002t0042g0067 a0001c0003t0009g0096 a0001c0003t0020g0053 a0001c0003t0025g0015 a0001c0003t0047g0033 a0001c0005t0004g0088 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0014t0016g0048 a0001c0016t0007g0089 a0001c0018t0049g0080 a0002c0007t0005g0094 a0002c0007t0008g0011	22	98	0.2245	-2	c.163 others(21): Show c.163+98578_163+98579delGA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235604572	CTT CTT	C C	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp2 HG03098.hp1 others(3): Show HG02615.hp1 HG02615.hp2 HG03098.hp1 HG03471.hp2 HG03516.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 others(1): Show a0001c0001 a0001c0002 a0001c0009 a0001c0019	a0001c0001t0012 a0001c0002t0004 a0001c0002t0014 others(3): Show a0001c0001t0012 a0001c0002t0004 a0001c0002t0014 a0001c0002t0038 a0001c0009t0015 a0001c0019t0007	a0001c0001t0012g0071 a0001c0002t0004g0072 a0001c0002t0014g0076 others(3): Show a0001c0001t0012g0071 a0001c0002t0004g0072 a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0009t0015g0038 a0001c0019t0007g0056	6	98	0.0612	-2	c.164 others(23): Show c.164-104580_164-104579delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235611118	ACT ACT	A A	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03540.hp1 HG03579.hp1 HG03195.hp1 HG03540.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0026 a0001c0003t0021 a0001c0001t0002 a0001c0001t0026 a0001c0003t0021	a0001c0001t0002g0047 a0001c0001t0026g0095 a0001c0003t0021g0023 a0001c0001t0002g0047 a0001c0001t0026g0095 a0001c0003t0021g0023	3	98	0.0306	-2	c.164 others(21): Show c.164-98058_164-98057delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235622991	CTG CTG	C C	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02896.hp1 HG03486.hp1 others(3): Show HG02647.hp2 HG02896.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0019	a0001c0001t0002 a0001c0001t0010 a0001c0002t0001 others(3): Show a0001c0001t0002 a0001c0001t0010 a0001c0002t0001 a0001c0003t0025 a0001c0005t0004 a0001c0019t0007	a0001c0001t0002g0049 a0001c0001t0010g0014 a0001c0002t0001g0073 others(3): Show a0001c0001t0002g0049 a0001c0001t0010g0014 a0001c0002t0001g0073 a0001c0003t0025g0015 a0001c0005t0004g0088 a0001c0019t0007g0056	6	98	0.0612	-2	c.164 others(21): Show c.164-86186_164-86185delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235627192	GTT GTT	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02280.hp1 HG02280.hp2 others(11): Show HG02109.hp1 HG02280.hp1 HG02280.hp2 HG02717.hp1 HG02717.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03579.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0012 a0001c0014	a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 others(11): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 a0001c0002t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0031 a0001c0010t0001 a0001c0012t0009 a0001c0014t0016	a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0007g0008 others(11): Show a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0007g0008 a0001c0001t0011g0098 a0001c0002t0001g0018 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0031g0031 a0001c0010t0001g0032 a0001c0012t0009g0078 a0001c0014t0016g0048	14	98	0.1429	-2	c.164 others(21): Show c.164-81964_164-81963delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235629268	TTG TTG	T T	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01168.hp2 HG01928.hp1 others(3): Show HG01123.hp2 HG01168.hp2 HG01928.hp1 HG02080.hp1 HG02723.hp2 HG03540.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0002c0004	a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0006t0033 a0002c0004t0001 a0002c0004t0006	a0001c0001t0002g0047 a0001c0001t0003g0034 a0001c0002t0001g0010 others(3): Show a0001c0001t0002g0047 a0001c0001t0003g0034 a0001c0002t0001g0010 a0001c0006t0033g0087 a0002c0004t0001g0025 a0002c0004t0006g0024	6	98	0.0612	-2	c.164 others(21): Show c.164-79861_164-79860delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235643431	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00741.hp1 HG01123.hp1 others(26): Show HG00642.hp2 HG00741.hp1 HG01123.hp1 HG01192.hp1 HG01496.hp2 HG01884.hp1 HG02080.hp1 HG02109.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02818.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp2 HG03195.hp1 HG03453.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 HG04199.hp2 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19240.hp1 NA20129.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0009 a0001c0011 a0001c0017 a0001c0019 a0001c0021 a0002c0004 a0002c0013	a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 others(23): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 a0001c0001t0044 a0001c0002t0001 a0001c0002t0014 a0001c0002t0043 a0001c0003t0003 a0001c0003t0020 a0001c0003t0021 a0001c0003t0022 a0001c0003t0025 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0040 a0001c0006t0037 a0001c0006t0046 a0001c0009t0017 a0001c0011t0036 a0001c0017t0008 a0001c0019t0007 a0001c0021t0002 a0002c0004t0001 a0002c0004t0030 a0002c0013t0041	a0001c0001t0002g0049 a0001c0001t0003g0036 a0001c0001t0011g0020 others(26): Show a0001c0001t0002g0049 a0001c0001t0003g0036 a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0073 a0001c0002t0014g0076 a0001c0002t0043g0064 a0001c0003t0003g0001 a0001c0003t0020g0053 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0003t0025g0015 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0005t0013g0050 a0001c0005t0040g0006 a0001c0006t0037g0021 a0001c0006t0046g0040 a0001c0009t0017g0037 a0001c0011t0036g0009 a0001c0017t0008g0092 a0001c0019t0007g0056 a0001c0021t0002g0091 a0002c0004t0001g0017 a0002c0004t0030g0045 a0002c0013t0041g0081	29	98	0.2959	-2	c.164 others(21): Show c.164-65720_164-65719delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235647120	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00741.hp1 HG01106.hp1 others(56): Show HG00642.hp2 HG00741.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp1 HG01192.hp1 HG01358.hp1 HG01358.hp2 HG01496.hp2 HG01884.hp1 HG01928.hp2 HG02080.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02135.hp2 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02818.hp1 HG02896.hp1 HG02922.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03579.hp2 HG03831.hp1 HG04199.hp2 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19240.hp1 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(15): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0009 a0001c0010 a0001c0011 a0001c0012 a0001c0014 a0001c0017 a0001c0018 a0001c0019 a0001c0021 a0002c0004 a0002c0007 a0002c0013 a0002c0020	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(45): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0001t0024 a0001c0002t0001 a0001c0002t0004 a0001c0002t0006 a0001c0002t0013 a0001c0002t0014 a0001c0002t0034 a0001c0002t0042 a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0020 a0001c0003t0022 a0001c0003t0025 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0031 a0001c0006t0001 a0001c0006t0006 a0001c0006t0035 a0001c0006t0037 a0001c0006t0046 a0001c0009t0017 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016 a0001c0017t0008 a0001c0018t0049 a0001c0019t0007 a0001c0021t0002 a0002c0004t0001 a0002c0004t0029 a0002c0004t0030 a0002c0007t0005 a0002c0013t0041 a0002c0020t0001	a0001c0001t0002g0002 a0001c0001t0002g0046 a0001c0001t0002g0049 others(56): Show a0001c0001t0002g0002 a0001c0001t0002g0046 a0001c0001t0002g0049 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0063 a0001c0001t0005g0007 a0001c0001t0007g0008 a0001c0001t0010g0014 a0001c0001t0011g0098 a0001c0001t0019g0065 a0001c0001t0024g0077 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0001g0030 a0001c0002t0001g0073 a0001c0002t0004g0072 a0001c0002t0006g0093 a0001c0002t0013g0035 a0001c0002t0014g0076 a0001c0002t0034g0084 a0001c0002t0042g0067 a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0020g0053 a0001c0003t0022g0055 a0001c0003t0025g0015 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0005t0004g0097 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0035g0044 a0001c0006t0037g0021 a0001c0006t0046g0040 a0001c0009t0017g0037 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048 a0001c0017t0008g0092 a0001c0018t0049g0080 a0001c0019t0007g0056 a0001c0021t0002g0091 a0002c0004t0001g0017 a0002c0004t0029g0083 a0002c0004t0030g0045 a0002c0007t0005g0026 a0002c0013t0041g0081 a0002c0020t0001g0022	59	98	0.6020	-2	c.164 others(21): Show c.164-62043_164-62042delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235648708	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp2 HG02280.hp1 others(17): Show HG02109.hp1 HG02109.hp2 HG02280.hp1 HG02280.hp2 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp2 HG02976.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03579.hp1 HG03579.hp2 NA19011.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0011 a0001c0012 a0001c0014	a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 others(16): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0011 a0001c0001t0026 a0001c0001t0044 a0001c0002t0001 a0001c0002t0032 a0001c0002t0039 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0031 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016	a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0007g0008 others(17): Show a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0007g0008 a0001c0001t0011g0020 a0001c0001t0011g0098 a0001c0001t0026g0095 a0001c0001t0044g0041 a0001c0002t0001g0018 a0001c0002t0032g0051 a0001c0002t0039g0059 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0031g0031 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048	20	98	0.2041	-2	c.164 others(21): Show c.164-60445_164-60444delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235650565	ACT ACT	A A	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02723.hp2 HG02922.hp1 others(2): Show HG02647.hp1 HG02723.hp2 HG02922.hp1 HG03041.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0021 a0001c0001 a0001c0002 a0001c0021	a0001c0001t0003 a0001c0001t0019 a0001c0002t0004 others(2): Show a0001c0001t0003 a0001c0001t0019 a0001c0002t0004 a0001c0002t0042 a0001c0021t0002	a0001c0001t0003g0034 a0001c0001t0019g0065 a0001c0002t0004g0072 others(2): Show a0001c0001t0003g0034 a0001c0001t0019g0065 a0001c0002t0004g0072 a0001c0002t0042g0067 a0001c0021t0002g0091	5	98	0.0510	-2	c.164 others(21): Show c.164-58611_164-58610delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235651184	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00741.hp2 HG01106.hp2 others(7): Show HG00438.hp1 HG00741.hp2 HG01106.hp2 HG02080.hp2 HG02083.hp1 HG02622.hp1 HG02976.hp1 HG03471.hp2 HG03831.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0009 others(4): Show a0001c0001 a0001c0002 a0001c0009 a0001c0016 a0002c0004 a0002c0007 a0002c0013	a0001c0001t0005 a0001c0001t0008 a0001c0002t0013 others(7): Show a0001c0001t0005 a0001c0001t0008 a0001c0002t0013 a0001c0009t0015 a0001c0016t0007 a0002c0004t0001 a0002c0004t0045 a0002c0007t0005 a0002c0007t0008 a0002c0013t0041	a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0002t0013g0035 others(7): Show a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0002t0013g0035 a0001c0009t0015g0038 a0001c0016t0007g0089 a0002c0004t0001g0043 a0002c0004t0045g0039 a0002c0007t0005g0094 a0002c0007t0008g0011 a0002c0013t0041g0081	10	98	0.1020	-2	c.164 others(21): Show c.164-57963_164-57962delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235652737	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02109.hp1 HG02280.hp1 others(11): Show HG01496.hp2 HG02109.hp1 HG02280.hp1 HG02280.hp2 HG02622.hp2 HG02630.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0011 a0001c0012 a0001c0014	a0001c0001t0005 a0001c0001t0011 a0001c0002t0043 others(11): Show a0001c0001t0005 a0001c0001t0011 a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0013 a0001c0005t0031 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016	a0001c0001t0005g0007 a0001c0001t0011g0098 a0001c0002t0043g0064 others(11): Show a0001c0001t0005g0007 a0001c0001t0011g0098 a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048	14	98	0.1429	-2	c.164 others(21): Show c.164-56438_164-56437delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235656650	GAC GAC	G G	intron_variant intron_variant	MODIFIER	HG02922.hp1 NA20129.hp1 HG02922.hp1 NA20129.hp1	a0001 a0001	a0001c0003 a0001c0021 a0001c0003 a0001c0021	a0001c0003t0022 a0001c0021t0002 a0001c0003t0022 a0001c0021t0002	a0001c0003t0022g0055 a0001c0021t0002g0091 a0001c0003t0022g0055 a0001c0021t0002g0091	2	98	0.0204	-2	c.164 others(21): Show c.164-52525_164-52524delCA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235662517	ATT ATT	A A	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02145.hp2 HG02615.hp1 others(13): Show HG02080.hp1 HG02145.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp1 HG02647.hp1 HG02723.hp2 HG02818.hp2 HG02922.hp2 HG03041.hp2 HG03098.hp1 HG03540.hp1 HG03579.hp1 HG03831.hp1 NA18522.hp1 NA19030.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0002c0007 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(11): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0001t0012 a0001c0001t0019 a0001c0001t0026 a0001c0002t0001 a0001c0002t0004 a0001c0002t0014 a0001c0002t0038 a0001c0002t0042 a0001c0005t0040 a0002c0007t0005 a0003c0015t0002	a0001c0001t0002g0047 a0001c0001t0003g0034 a0001c0001t0003g0063 others(13): Show a0001c0001t0002g0047 a0001c0001t0003g0034 a0001c0001t0003g0063 a0001c0001t0010g0003 a0001c0001t0012g0071 a0001c0001t0019g0065 a0001c0001t0026g0095 a0001c0002t0001g0010 a0001c0002t0004g0079 a0001c0002t0014g0052 a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0002t0042g0067 a0001c0005t0040g0006 a0002c0007t0005g0026 a0003c0015t0002g0075	16	98	0.1633	-2	c.164 others(21): Show c.164-46644_164-46643delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235667959	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00741.hp1 HG01106.hp1 others(36): Show HG00642.hp2 HG00741.hp1 HG01106.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp1 HG01168.hp2 HG01358.hp1 HG01496.hp2 HG01884.hp1 HG01928.hp1 HG01928.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02280.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02896.hp2 HG02976.hp2 HG03139.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03579.hp2 HG04199.hp2 NA18906.hp2 NA19011.hp2 NA19240.hp1 NA20129.hp2 NA20300.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0009 a0001c0011 a0001c0012 a0001c0014 a0001c0017 a0002c0004 a0002c0013 a0002c0020	a0001c0001t0011 a0001c0001t0044 a0001c0002t0001 others(31): Show a0001c0001t0011 a0001c0001t0044 a0001c0002t0001 a0001c0002t0006 a0001c0002t0032 a0001c0002t0034 a0001c0002t0039 a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0020 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0031 a0001c0006t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0035 a0001c0006t0046 a0001c0009t0015 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016 a0001c0017t0008 a0002c0004t0001 a0002c0004t0006 a0002c0004t0029 a0002c0004t0030 a0002c0013t0041 a0002c0020t0001	a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0002t0001g0004 others(36): Show a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0002t0001g0004 a0001c0002t0001g0013 a0001c0002t0001g0030 a0001c0002t0001g0073 a0001c0002t0006g0093 a0001c0002t0032g0051 a0001c0002t0034g0084 a0001c0002t0039g0059 a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0020g0053 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0097 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0035g0044 a0001c0006t0046g0040 a0001c0009t0015g0038 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048 a0001c0017t0008g0092 a0002c0004t0001g0017 a0002c0004t0001g0025 a0002c0004t0006g0024 a0002c0004t0029g0083 a0002c0004t0030g0045 a0002c0013t0041g0081 a0002c0020t0001g0022	39	98	0.3980	-2	c.164 others(21): Show c.164-41196_164-41195delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235675190	GTT GTT	G G	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01123.hp1 HG01123.hp2 others(10): Show HG01106.hp1 HG01123.hp1 HG01123.hp2 HG01168.hp2 HG01928.hp2 HG02109.hp2 HG02647.hp1 HG02809.hp2 HG03195.hp1 NA18522.hp2 NA19030.hp2 NA20300.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0002c0004 a0002c0020	a0001c0001t0011 a0001c0001t0044 a0001c0002t0004 others(10): Show a0001c0001t0011 a0001c0001t0044 a0001c0002t0004 a0001c0002t0006 a0001c0002t0032 a0001c0002t0042 a0001c0003t0021 a0001c0005t0040 a0001c0006t0033 a0001c0006t0035 a0002c0004t0001 a0002c0004t0030 a0002c0020t0001	a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0002t0004g0072 others(10): Show a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0002t0004g0072 a0001c0002t0006g0093 a0001c0002t0032g0051 a0001c0002t0042g0067 a0001c0003t0021g0023 a0001c0005t0040g0006 a0001c0006t0033g0087 a0001c0006t0035g0044 a0002c0004t0001g0025 a0002c0004t0030g0045 a0002c0020t0001g0022	13	98	0.1327	-2	c.164 others(21): Show c.164-33973_164-33972delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235681843	CTT CTT	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01123.hp1 HG02145.hp1 others(6): Show HG00741.hp1 HG01123.hp1 HG02145.hp1 HG02615.hp1 HG02723.hp1 HG02896.hp2 HG03098.hp1 HG03098.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0018 a0002c0004	a0001c0001t0002 a0001c0001t0003 a0001c0002t0014 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0014 a0001c0002t0038 a0001c0002t0039 a0001c0006t0046 a0001c0008t0028 a0001c0018t0049 a0002c0004t0030	a0001c0001t0002g0070 a0001c0001t0003g0036 a0001c0002t0014g0076 others(6): Show a0001c0001t0002g0070 a0001c0001t0003g0036 a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0002t0039g0059 a0001c0006t0046g0040 a0001c0008t0028g0029 a0001c0018t0049g0080 a0002c0004t0030g0045	9	98	0.0918	-2	c.164 others(21): Show c.164-27312_164-27311delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235684924	CTG CTG	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02717.hp1 HG03041.hp1 others(5): Show HG01884.hp2 HG02717.hp1 HG03041.hp1 HG03139.hp2 HG03471.hp1 HG03516.hp1 HG03516.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0019 a0001c0001 a0001c0019	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(5): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0048 a0001c0019t0007	a0001c0001t0002g0046 a0001c0001t0005g0007 a0001c0001t0007g0008 others(5): Show a0001c0001t0002g0046 a0001c0001t0005g0007 a0001c0001t0007g0008 a0001c0001t0009g0074 a0001c0001t0010g0014 a0001c0001t0011g0098 a0001c0001t0048g0054 a0001c0019t0007g0056	8	98	0.0816	-2	c.164 others(21): Show c.164-24252_164-24251delTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686546	GAT GAT	G G	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp2 NA18522.hp1 NA18522.hp2	a0001 a0003 a0001 a0003	a0001c0002 a0003c0015 a0001c0002 a0003c0015	a0001c0002t0004 a0003c0015t0002 a0001c0002t0004 a0003c0015t0002	a0001c0002t0004g0072 a0003c0015t0002g0075 a0001c0002t0004g0072 a0003c0015t0002g0075	2	98	0.0204	-2	c.164 others(21): Show c.164-22623_164-22622delTA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686556	TAC TAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00642.hp1 HG00741.hp2 others(9): Show HG00438.hp1 HG00642.hp1 HG00741.hp2 HG01106.hp2 HG01192.hp2 HG01496.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02717.hp2 HG03831.hp2 HG04199.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 others(1): Show a0001c0001 a0001c0002 a0002c0004 a0002c0007	a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 others(7): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0002c0004t0001 a0002c0004t0006 a0002c0004t0045 a0002c0007t0005 a0002c0007t0008 a0002c0007t0018	a0001c0001t0003g0090 a0001c0001t0005g0012 a0001c0001t0008g0069 others(9): Show a0001c0001t0003g0090 a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0002t0001g0027 a0001c0002t0001g0068 a0002c0004t0001g0043 a0002c0004t0001g0082 a0002c0004t0006g0042 a0002c0004t0045g0039 a0002c0007t0005g0094 a0002c0007t0008g0011 a0002c0007t0018g0028	12	98	0.1225	-2	c.164 others(21): Show c.164-22592_164-22591delAC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686618	TAG TAG	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02572.hp1 HG02622.hp1 others(2): Show HG02280.hp1 HG02572.hp1 HG02622.hp1 HG03579.hp2 NA19011.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0005 a0001c0006 others(2): Show a0001c0003 a0001c0005 a0001c0006 a0001c0012 a0002c0013	a0001c0003t0012 a0001c0005t0004 a0001c0006t0001 others(2): Show a0001c0003t0012 a0001c0005t0004 a0001c0006t0001 a0001c0012t0009 a0002c0013t0041	a0001c0003t0012g0066 a0001c0005t0004g0097 a0001c0006t0001g0016 others(2): Show a0001c0003t0012g0066 a0001c0005t0004g0097 a0001c0006t0001g0016 a0001c0012t0009g0078 a0002c0013t0041g0081	5	98	0.0510	-2	c.164 others(21): Show c.164-22559_164-22558delGA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235699069	TCC TCC	T T	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01884.hp1 HG02109.hp1 others(19): Show HG01496.hp2 HG01884.hp1 HG02109.hp1 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp2 NA19030.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0005 others(5): Show a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0011 a0001c0012 a0001c0014 a0002c0013	a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 others(17): Show a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0020 a0001c0003t0021 a0001c0003t0022 a0001c0003t0025 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0031 a0001c0005t0040 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016 a0002c0013t0041	a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 others(19): Show a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0020g0053 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0003t0025g0015 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0005t0004g0097 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048 a0002c0013t0041g0081	22	98	0.2245	-2	c.164 others(21): Show c.164-10100_164-10099delCC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235707472	ACC ACC	A A	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01168.hp2 HG01928.hp2 others(15): Show HG01123.hp2 HG01168.hp2 HG01928.hp2 HG02080.hp1 HG02135.hp2 HG02280.hp2 HG02572.hp1 HG02615.hp2 HG02622.hp1 HG02647.hp2 HG02809.hp1 HG03041.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2 NA18522.hp1 NA19011.hp2 NA20300.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0002c0004 a0002c0013 a0002c0020 a0003c0015	a0001c0001t0002 a0001c0001t0012 a0001c0001t0019 others(14): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0019 a0001c0001t0026 a0001c0002t0001 a0001c0002t0006 a0001c0002t0034 a0001c0003t0012 a0001c0005t0004 a0001c0005t0031 a0001c0006t0001 a0001c0006t0033 a0001c0010t0001 a0002c0004t0001 a0002c0013t0041 a0002c0020t0001 a0003c0015t0002	a0001c0001t0002g0047 a0001c0001t0012g0071 a0001c0001t0019g0065 others(15): Show a0001c0001t0002g0047 a0001c0001t0012g0071 a0001c0001t0019g0065 a0001c0001t0026g0095 a0001c0002t0001g0010 a0001c0002t0006g0093 a0001c0002t0034g0084 a0001c0003t0012g0066 a0001c0005t0004g0088 a0001c0005t0004g0097 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0006t0033g0087 a0001c0010t0001g0032 a0002c0004t0001g0025 a0002c0013t0041g0081 a0002c0020t0001g0022 a0003c0015t0002g0075	18	98	0.1837	-2	c.164 others(19): Show c.164-1694_164-1693delCC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235708604	ACT ACT	A A	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01884.hp1 HG02109.hp1 others(19): Show HG01496.hp2 HG01884.hp1 HG02109.hp1 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp2 NA19030.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0005 others(5): Show a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0011 a0001c0012 a0001c0014 a0002c0013	a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 others(17): Show a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0020 a0001c0003t0021 a0001c0003t0022 a0001c0003t0025 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0031 a0001c0005t0040 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016 a0002c0013t0041	a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 others(19): Show a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0020g0053 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0003t0025g0015 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0005t0004g0097 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048 a0002c0013t0041g0081	22	98	0.2245	-2	c.164 others(17): Show c.164-572_164-571delCT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235714665	CAG CAG	C C	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG03098.hp1 HG03516.hp2 HG02615.hp1 HG03098.hp1 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0019 a0001c0002 a0001c0019	a0001c0002t0014 a0001c0002t0038 a0001c0019t0007 a0001c0002t0014 a0001c0002t0038 a0001c0019t0007	a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0019t0007g0056 a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0019t0007g0056	3	98	0.0306	-2	c.223 others(19): Show c.223-2888_223-2887delGA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	2/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235721477	ATG ATG	A A	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01192.hp1 HG01928.hp2 others(10): Show HG01123.hp2 HG01192.hp1 HG01928.hp2 HG02083.hp2 HG02135.hp1 HG02135.hp2 HG02622.hp2 HG02647.hp1 HG02976.hp1 HG04199.hp2 NA19011.hp2 NA19240.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(3): Show a0001c0001 a0001c0002 a0001c0006 a0001c0016 a0001c0017 a0002c0020	a0001c0001t0027 a0001c0002t0001 a0001c0002t0006 others(10): Show a0001c0001t0027 a0001c0002t0001 a0001c0002t0006 a0001c0002t0034 a0001c0002t0042 a0001c0002t0043 a0001c0006t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0037 a0001c0016t0007 a0001c0017t0008 a0002c0020t0001	a0001c0001t0027g0062 a0001c0002t0001g0027 a0001c0002t0006g0093 others(10): Show a0001c0001t0027g0062 a0001c0002t0001g0027 a0001c0002t0006g0093 a0001c0002t0034g0084 a0001c0002t0042g0067 a0001c0002t0043g0064 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0037g0021 a0001c0016t0007g0089 a0001c0017t0008g0092 a0002c0020t0001g0022	13	98	0.1327	-2	c.310 others(19): Show c.310+3859_310+3860delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	3/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235734526	GAA GAA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp1 HG02717.hp2 others(8): Show HG01884.hp1 HG02109.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02976.hp1 HG02976.hp2 HG03139.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 others(2): Show a0001c0001 a0001c0003 a0001c0005 a0001c0014 a0001c0016	a0001c0001t0003 a0001c0003t0002 a0001c0003t0003 others(7): Show a0001c0001t0003 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0005t0031 a0001c0014t0016 a0001c0016t0007	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0003t0002g0005 others(8): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0031g0031 a0001c0014t0016g0048 a0001c0016t0007g0089	11	98	0.1122	-2	c.311 others(19): Show c.311-6425_311-6424delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	3/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235736104	TCA TCA	T T	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA21309.hp2 HG02109.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0044 a0001c0001t0011 a0001c0001t0044	a0001c0001t0011g0020 a0001c0001t0044g0041 a0001c0001t0011g0020 a0001c0001t0044g0041	2	98	0.0204	-2	c.311 others(19): Show c.311-4857_311-4856delAC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	3/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235764085	CAT CAT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00741.hp1 HG01123.hp1 others(16): Show HG00642.hp2 HG00741.hp1 HG01123.hp1 HG01168.hp2 HG01928.hp1 HG02109.hp2 HG02145.hp2 HG02572.hp2 HG02615.hp2 HG02647.hp1 HG02647.hp2 HG02809.hp2 HG02896.hp1 HG02922.hp2 HG02976.hp1 HG03453.hp1 HG03579.hp1 NA18906.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0016 a0002c0004	a0001c0001t0002 a0001c0001t0010 a0001c0001t0011 others(13): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0001t0026 a0001c0001t0044 a0001c0002t0001 a0001c0002t0014 a0001c0002t0032 a0001c0002t0042 a0001c0005t0004 a0001c0006t0046 a0001c0016t0007 a0002c0004t0001 a0002c0004t0006 a0002c0004t0030	a0001c0001t0002g0060 a0001c0001t0010g0003 a0001c0001t0011g0020 others(16): Show a0001c0001t0002g0060 a0001c0001t0010g0003 a0001c0001t0011g0020 a0001c0001t0012g0071 a0001c0001t0026g0095 a0001c0001t0044g0041 a0001c0002t0001g0004 a0001c0002t0001g0073 a0001c0002t0014g0052 a0001c0002t0032g0051 a0001c0002t0042g0067 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0006t0046g0040 a0001c0016t0007g0089 a0002c0004t0001g0017 a0002c0004t0001g0025 a0002c0004t0006g0024 a0002c0004t0030g0045	19	98	0.1939	-2	c.673 others(21): Show c.673+13598_673+13599delAT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235766907	ATT ATT	A A	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02622.hp2 HG02818.hp2 others(6): Show HG01358.hp2 HG02622.hp2 HG02818.hp2 HG02896.hp2 HG03098.hp2 HG03486.hp1 NA18906.hp1 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0018 a0001c0001 a0001c0002 a0001c0018	a0001c0001t0002 a0001c0001t0010 a0001c0001t0027 others(5): Show a0001c0001t0002 a0001c0001t0010 a0001c0001t0027 a0001c0002t0001 a0001c0002t0004 a0001c0002t0039 a0001c0002t0043 a0001c0018t0049	a0001c0001t0002g0002 a0001c0001t0002g0049 a0001c0001t0010g0014 others(6): Show a0001c0001t0002g0002 a0001c0001t0002g0049 a0001c0001t0010g0014 a0001c0001t0027g0062 a0001c0002t0001g0013 a0001c0002t0004g0079 a0001c0002t0039g0059 a0001c0002t0043g0064 a0001c0018t0049g0080	9	98	0.0918	-2	c.673 others(21): Show c.673+16440_673+16441delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235767777	CTT CTT	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02080.hp2 HG02109.hp1 others(8): Show HG01884.hp1 HG02080.hp2 HG02109.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 others(1): Show a0001c0001 a0001c0003 a0001c0005 a0001c0014	a0001c0001t0003 a0001c0001t0005 a0001c0003t0002 others(7): Show a0001c0001t0003 a0001c0001t0005 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0005t0031 a0001c0014t0016	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0005g0012 others(8): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0005g0012 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0031g0031 a0001c0014t0016g0048	11	98	0.1122	-2	c.673 others(21): Show c.673+17313_673+17314delTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235770285	ACC ACC	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01123.hp2 HG01192.hp1 others(18): Show HG01106.hp1 HG01123.hp2 HG01192.hp1 HG01884.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02145.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp2 HG03453.hp2 HG03486.hp2 HG03579.hp2 HG04199.hp2 NA18906.hp1 NA19011.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0014 a0001c0017 a0002c0020	a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 others(17): Show a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0005t0031 a0001c0006t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0035 a0001c0006t0037 a0001c0008t0001 a0001c0008t0028 a0001c0014t0016 a0001c0017t0008 a0002c0020t0001	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0010g0014 others(18): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0010g0014 a0001c0002t0001g0027 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0035g0044 a0001c0006t0037g0021 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0014t0016g0048 a0001c0017t0008g0092 a0002c0020t0001g0022	21	98	0.2143	-2	c.673 others(21): Show c.673+19800_673+19801delCC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235772188	CAG CAG	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02717.hp1 HG03041.hp1 others(4): Show HG01884.hp2 HG02717.hp1 HG03041.hp1 HG03195.hp1 HG03471.hp2 NA19030.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0009 a0001c0001 a0001c0003 a0001c0009	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0024 a0001c0003t0021 a0001c0009t0015	a0001c0001t0002g0046 a0001c0001t0003g0036 a0001c0001t0007g0008 others(4): Show a0001c0001t0002g0046 a0001c0001t0003g0036 a0001c0001t0007g0008 a0001c0001t0009g0074 a0001c0001t0024g0077 a0001c0003t0021g0023 a0001c0009t0015g0038	7	98	0.0714	-2	c.673 others(21): Show c.673+21701_673+21702delAG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235772971	CTG CTG	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01123.hp2 HG01192.hp1 others(18): Show HG01106.hp1 HG01123.hp2 HG01192.hp1 HG01884.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02145.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp2 HG03453.hp2 HG03486.hp2 HG03579.hp2 HG04199.hp2 NA18906.hp1 NA19011.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0014 a0001c0017 a0002c0020	a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 others(17): Show a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0005t0031 a0001c0006t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0035 a0001c0006t0037 a0001c0008t0001 a0001c0008t0028 a0001c0014t0016 a0001c0017t0008 a0002c0020t0001	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0010g0014 others(18): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0010g0014 a0001c0002t0001g0027 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0031g0031 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0035g0044 a0001c0006t0037g0021 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0014t0016g0048 a0001c0017t0008g0092 a0002c0020t0001g0022	21	98	0.2143	-2	c.673 others(21): Show c.673+22487_673+22488delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235779326	CTG CTG	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03195.hp2 NA18906.hp1 others(1): Show HG02145.hp1 HG03195.hp2 NA18906.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0010 a0001c0002t0001 a0001c0008t0001 others(1): Show a0001c0001t0010 a0001c0002t0001 a0001c0008t0001 a0001c0008t0028	a0001c0001t0010g0014 a0001c0002t0001g0013 a0001c0008t0001g0061 others(1): Show a0001c0001t0010g0014 a0001c0002t0001g0013 a0001c0008t0001g0061 a0001c0008t0028g0029	4	98	0.0408	-2	c.674 others(21): Show c.674-18429_674-18428delGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235784598	CAA CAA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01123.hp2 HG01192.hp1 others(16): Show HG01106.hp1 HG01123.hp2 HG01192.hp1 HG01884.hp1 HG02083.hp2 HG02109.hp1 HG02135.hp1 HG02717.hp1 HG02717.hp2 HG02723.hp2 HG02976.hp2 HG03139.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 HG04199.hp2 NA18522.hp2 NA20300.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0014 a0001c0017 a0002c0020	a0001c0001t0003 a0001c0001t0007 a0001c0001t0024 others(15): Show a0001c0001t0003 a0001c0001t0007 a0001c0001t0024 a0001c0002t0001 a0001c0002t0004 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0035 a0001c0006t0037 a0001c0014t0016 a0001c0017t0008 a0002c0020t0001	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0007g0008 others(16): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0007g0008 a0001c0001t0024g0077 a0001c0002t0001g0027 a0001c0002t0004g0072 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0035g0044 a0001c0006t0037g0021 a0001c0014t0016g0048 a0001c0017t0008g0092 a0002c0020t0001g0022	19	98	0.1939	-2	c.674 others(21): Show c.674-13144_674-13143delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235788228	CAG CAG	C C	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03195.hp2 NA18906.hp1 others(1): Show HG02145.hp1 HG03195.hp2 NA18906.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 a0001c0001 a0001c0002 a0001c0008	a0001c0001t0010 a0001c0002t0001 a0001c0008t0001 others(1): Show a0001c0001t0010 a0001c0002t0001 a0001c0008t0001 a0001c0008t0028	a0001c0001t0010g0014 a0001c0002t0001g0013 a0001c0008t0001g0061 others(1): Show a0001c0001t0010g0014 a0001c0002t0001g0013 a0001c0008t0001g0061 a0001c0008t0028g0029	4	98	0.0408	-2	c.674 others(19): Show c.674-9530_674-9529delAG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235795664	GAA GAA	G G	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02145.hp1 HG03195.hp2 others(1): Show HG01496.hp2 HG02145.hp1 HG03195.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0008 a0001c0002 a0001c0005 a0001c0008	a0001c0002t0001 a0001c0005t0013 a0001c0008t0001 others(1): Show a0001c0002t0001 a0001c0005t0013 a0001c0008t0001 a0001c0008t0028	a0001c0002t0001g0013 a0001c0005t0013g0050 a0001c0008t0001g0061 others(1): Show a0001c0002t0001g0013 a0001c0005t0013g0050 a0001c0008t0001g0061 a0001c0008t0028g0029	4	98	0.0408	-2	c.674 others(19): Show c.674-2087_674-2086delAA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17	INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235807172	CAG CAG	C C	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02615.hp1 NA21309.hp1 HG02083.hp2 HG02615.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0024 a0001c0002t0001 a0001c0002t0014 a0001c0001t0024 a0001c0002t0001 a0001c0002t0014	a0001c0001t0024g0077 a0001c0002t0001g0027 a0001c0002t0014g0076 a0001c0001t0024g0077 a0001c0002t0001g0027 a0001c0002t0014g0076	3	98	0.0306	-2	c.958 others(15): Show c.958-66_958-65delAG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	8/17		chr2	TogoVar

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