Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
OR1E1_chr17_3392104_3403410	3399325	GAAAGAAA others(13): Show GAAAGAAAGAAAGAGAAAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	1	380	0.0026	-20	c.-93 others(29): Show c.-935_-916delTTCTTTCTCTTTCTTTCTTT		OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding					916		chr17	TogoVar
OR1E2_chr17_3427870_3438841	3435327	CTTTTTTT others(13): Show CTTTTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	448	0.0022	-20	c.-15 others(31): Show c.-1506_-1487delAAAAAAAAAAAAAAAAAAAA		OR1E2	ENSG00000127780.3	transcript	ENST00000248384.1	protein_coding					1487		chr17	TogoVar
OR1I1_chr19_15077211_15097970	15085130	TTATATAT others(13): Show TTATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02132.hp2 NA18948.hp2 others(5): Show HG02074.hp1 HG02132.hp2 NA18948.hp2 NA18949.hp1 NA18997.hp2 NA19070.hp2 NA19081.hp2 NA19088.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0018 a0002c0004t0048 a0002c0004t0187 others(4): Show a0002c0004t0018 a0002c0004t0048 a0002c0004t0187 a0002c0004t0197 a0002c0004t0198 a0002c0004t0311 a0002c0004t0312	a0002c0004t0018g0184 a0002c0004t0018g0249 a0002c0004t0048g0022 others(5): Show a0002c0004t0018g0184 a0002c0004t0018g0249 a0002c0004t0048g0022 a0002c0004t0187g0022 a0002c0004t0197g0182 a0002c0004t0198g0022 a0002c0004t0311g0092 a0002c0004t0312g0022	8	456	0.0175	-20	c.-13 others(37): Show c.-13-1895_-13-1876delATATATATATATATATATAT		OR1I1	ENSG00000094661.3	transcript	ENST00000641398.1	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr19	TogoVar
OR1I1_chr19_15077211_15097970	15088693	TAGATAGA others(13): Show TAGATAGATAGATAGATAGAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02080.hp1 HG02132.hp1 NA18954.hp1 HG02080.hp1 HG02132.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0070 a0001c0001t0071 a0001c0001t0072 a0001c0001t0070 a0001c0001t0071 a0001c0001t0072	a0001c0001t0070g0149 a0001c0001t0071g0024 a0001c0001t0072g0191 a0001c0001t0070g0149 a0001c0001t0071g0024 a0001c0001t0072g0191	3	456	0.0066	-20	c.56 others(29): Show c.564_*583delTAGATAGATAGATAGACAGA		OR1I1	ENSG00000094661.3	transcript	ENST00000641398.1	protein_coding	2/2				564	INFO_REALIGN_3_PRIME	chr19	TogoVar
OR1I1_chr19_15077211_15097970	15088773	GTAGATAG others(13): Show GTAGATAGATAGATAGATAGA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01934.hp1 HG03471.hp2 NA18946.hp1 others(6): Show HG01934.hp1 HG03471.hp2 NA18946.hp1 NA18989.hp2 NA19002.hp2 NA19007.hp2 NA19055.hp1 NA19067.hp2 NA19087.hp1	a0002 a0003 a0002 a0003	a0002c0003 a0002c0004 a0003c0002 a0002c0003 a0002c0004 a0003c0002	a0002c0003t0059 a0002c0003t0097 a0002c0003t0228 others(5): Show a0002c0003t0059 a0002c0003t0097 a0002c0003t0228 a0002c0003t0229 a0002c0003t0230 a0002c0003t0231 a0002c0004t0073 a0003c0002t0179	a0002c0003t0059g0017 a0002c0003t0059g0230 a0002c0003t0097g0266 others(6): Show a0002c0003t0059g0017 a0002c0003t0059g0230 a0002c0003t0097g0266 a0002c0003t0228g0017 a0002c0003t0229g0017 a0002c0003t0230g0017 a0002c0003t0231g0017 a0002c0004t0073g0026 a0003c0002t0179g0154	9	456	0.0197	-20	c.67 others(29): Show c.671_*690delGATAGATAGATAGATAGATA		OR1I1	ENSG00000094661.3	transcript	ENST00000641398.1	protein_coding	2/2				671	INFO_REALIGN_3_PRIME	chr19	TogoVar
OR1L3_chr9_122670130_122681104	122675368	AGATGCTC others(13): Show AGATGCTCGTGAACTTCTTAT	A A	frameshift_variant frameshift_variant	HIGH	HG01071.hp2 HG01071.hp2	a0007 a0007	a0007c0010 a0007c0010	a0007c0010t0001 a0007c0010t0001	a0007c0010t0001g0000 a0007c0010t0001g0000	1	380	0.0026	-20	c.240 others(27): Show c.240_259delGATGCTCGTGAACTTCTTAT	p.Lys others(4): Show p.Lys80fs	OR1L3	ENSG00000171481.5	transcript	ENST00000304820.5	protein_coding	1/1	240/975	240/975	80/324			chr9	TogoVar
OR1N2_chr9_122548112_122559214	122552007	AGGTGAGG others(13): Show AGGTGAGGATTTGGAAGGGGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG03540.hp2 HG04199.hp1 HG02809.hp2 HG03540.hp2 HG04199.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0000 a0001c0003t0004g0000	3	436	0.0069	-20	c.-12 others(31): Show c.-1204_-1185delGGTGAGGATTTGGAAGGGGT		OR1N2	ENSG00000171501.11	transcript	ENST00000373688.3	protein_coding					1104		chr9	TogoVar
OR1N2_chr9_122548112_122559214	122552749	AGTGTGTG others(13): Show AGTGTGTGTGTGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG02109.hp1 NA19240.hp2 HG00639.hp2 HG02109.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0002 a0001c0003 a0002c0002	a0001c0003t0004 a0002c0002t0003 a0001c0003t0004 a0002c0002t0003	a0001c0003t0004g0000 a0002c0002t0003g0000 a0001c0003t0004g0000 a0002c0002t0003g0000	3	436	0.0069	-20	c.-46 others(29): Show c.-462_-443delGTGTGTGTGTGTGTGTGTGT		OR1N2	ENSG00000171501.11	transcript	ENST00000373688.3	protein_coding					362		chr9	TogoVar
OR2A25_chr7_144064811_144080870	144068110	CTGTGTGT others(13): Show CTGTGTGTGTGTGTGTGTGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0005 a0005	a0005c0008 a0005c0008	a0005c0008t0002 a0005c0008t0002	a0005c0008t0002g0032 a0005c0008t0002g0032	1	418	0.0024	-20	c.-17 others(31): Show c.-1790_-1771delTGTGTGTGTGTGTGTGTGTG		OR2A25	ENSG00000221933.3	transcript	ENST00000641663.1	protein_coding					1700		chr7	TogoVar
OR2AG1_chr11_6778020_6796558	6779210	ATATATAT others(13): Show ATATATATATTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0001 a0001c0001t0063g0001	1	468	0.0021	-20	c.-42 others(31): Show c.-4281_-4262delTATATATATTTTTTTTTTTT		OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding					3809		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779212	ATATATAT others(13): Show ATATATATTTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0099 a0006c0010t0099	a0006c0010t0099g0015 a0006c0010t0099g0015	1	468	0.0021	-20	c.-42 others(31): Show c.-4279_-4260delTATATATTTTTTTTTTTTTT		OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding					3807		chr11	TogoVar
OR2B11_chr1_247444182_247463104	247458320	CTGTGTGT others(13): Show CTGTGTGTGTGTGTGTGTGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG01261.hp1 HG01981.hp1 others(17): Show HG01243.hp2 HG01261.hp1 HG01981.hp1 HG02145.hp2 HG02258.hp1 HG02451.hp1 HG02572.hp2 HG02723.hp1 HG02818.hp2 HG02976.hp1 HG03041.hp1 HG03139.hp2 HG03195.hp1 HG03225.hp2 HG03471.hp2 HG03486.hp1 HG03486.hp2 NA18522.hp1 NA19030.hp1 NA20129.hp2	a0001 a0008 a0010 others(1): Show a0001 a0008 a0010 a0011	a0001c0002 a0001c0012 a0001c0019 others(3): Show a0001c0002 a0001c0012 a0001c0019 a0008c0035 a0010c0032 a0011c0017	a0001c0002t0008 a0001c0002t0030 a0001c0002t0072 others(8): Show a0001c0002t0008 a0001c0002t0030 a0001c0002t0072 a0001c0002t0077 a0001c0012t0074 a0001c0012t0076 a0001c0019t0073 a0008c0035t0163 a0010c0032t0164 a0011c0017t0031 a0011c0017t0075	a0001c0002t0008g0008 a0001c0002t0030g0039 a0001c0002t0072g0089 others(8): Show a0001c0002t0008g0008 a0001c0002t0030g0039 a0001c0002t0072g0089 a0001c0002t0077g0088 a0001c0012t0074g0091 a0001c0012t0076g0093 a0001c0019t0073g0090 a0008c0035t0163g0213 a0010c0032t0164g0216 a0011c0017t0031g0040 a0011c0017t0075g0092	20	478	0.0418	-20	c.-37 others(31): Show c.-3784_-3765delCACACACACACACACACACA		OR2B11	ENSG00000177535.10	transcript	ENST00000641149.2	protein_coding					217		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248576114	AAAAAAAA others(13): Show AAAAAAAAAAAAAAAAACAAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0001 a0008c0008t0001	a0008c0008t0001g0000 a0008c0008t0001g0000	1	314	0.0032	-20	c.-13 others(31): Show c.-1377_-1358delGTTGTTTTTTTTTTTTTTTT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					1358		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578983	TATATATA others(13): Show TATATATATATATATATACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	1	314	0.0032	-20	c.-42 others(31): Show c.-4246_-4227delGTGTATATATATATATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4227		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578985	TATATATA others(13): Show TATATATATATATATACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 HG02602.hp2 HG04115.hp2 others(3): Show HG01952.hp1 HG02602.hp2 HG04115.hp2 NA18969.hp2 NA18992.hp1 NA20129.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0005 a0001c0001 a0002c0002 a0006c0005	a0001c0001t0001 a0002c0002t0001 a0006c0005t0001 a0001c0001t0001 a0002c0002t0001 a0006c0005t0001	a0001c0001t0001g0000 a0002c0002t0001g0000 a0006c0005t0001g0000 a0001c0001t0001g0000 a0002c0002t0001g0000 a0006c0005t0001g0000	6	314	0.0191	-20	c.-42 others(31): Show c.-4248_-4229delGTGTGTATATATATATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4229		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578987	TATATATA others(13): Show TATATATATATATACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp2 HG03927.hp1 NA19067.hp2 HG02129.hp2 HG03927.hp1 NA19067.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	3	314	0.0096	-20	c.-42 others(31): Show c.-4250_-4231delGTGTGTGTATATATATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4231		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578989	TATATATA others(13): Show TATATATATATACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	1	314	0.0032	-20	c.-42 others(31): Show c.-4252_-4233delGTGTGTGTGTATATATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4233		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578991	TATATATA others(13): Show TATATATATACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG03209.hp1 NA20300.hp1 HG01884.hp1 HG03209.hp1 NA20300.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0000 a0003c0003t0001g0000	3	314	0.0096	-20	c.-42 others(31): Show c.-4254_-4235delGTGTGTGTGTGTATATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4235		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578993	TATATATA others(13): Show TATATATACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	314	0.0032	-20	c.-42 others(31): Show c.-4256_-4237delGTGTGTGTGTGTGTATATAT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4237		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578999	TACACACA others(13): Show TACACACACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 HG03225.hp2 NA20129.hp2 HG03130.hp2 HG03225.hp2 NA20129.hp2	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0001 a0009c0009t0001	a0009c0009t0001g0000 a0009c0009t0001g0000	3	314	0.0096	-20	c.-42 others(31): Show c.-4262_-4243delGTGTGTGTGTGTGTGTGTGT		OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding					4243		chr1	TogoVar
OR2Z1_chr19_8716634_8737160	8723992	GTGTGTGT others(13): Show GTGTGTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02895.hp1 HG03471.hp1 HG02109.hp1 HG02895.hp1 HG03471.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0005 a0002c0004t0005	a0002c0004t0005g0033 a0002c0004t0005g0033	3	438	0.0069	-20	c.-17 others(37): Show c.-170+861_-170+880delTATGTGTGTGTGTGTGTGTG		OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr19	TogoVar
OR3A1_chr17_3286017_3303360	3289090	GGTGTGTT others(13): Show GGTGTGTTTGTGTGTGTGAGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0056 a0002c0002t0001g0056	1	398	0.0025	-20	c.25 others(31): Show c.2525_*2544delACTCACACACACAAACACAC		OR3A1	ENSG00000180090.6	transcript	ENST00000323404.2	protein_coding					1926		chr17	TogoVar
OR3A2_chr17_3271177_3391308	3289090	GGTGTGTT others(13): Show GGTGTGTTTGTGTGTGTGAGT	G G	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0024 a0001c0005t0024	a0001c0005t0024g0083 a0001c0005t0024g0083	1	318	0.0031	-20	c.-27 others(39): Show c.-278-4559_-278-4540delACTCACACACACAAACACAC		OR3A2	ENSG00000221882.5	transcript	ENST00000573901.3	protein_coding	2/4						chr17	TogoVar
OR4A5_chr11_54701832_54712902	54704704	TTTTTCTT others(13): Show TTTTTCTTTTCTTTTCTTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp1 HG03453.hp1 HG02615.hp1 HG03453.hp1	a0007 a0007	a0007c0006 a0007c0006	a0007c0006t0002 a0007c0006t0002	a0007c0006t0002g0000 a0007c0006t0002g0000	2	466	0.0043	-20	c.-21 others(31): Show c.-2180_-2161delTTTTCTTTTCTTTTCTTTTC		OR4A5	ENSG00000221840.4	transcript	ENST00000319760.8	protein_coding					2127		chr11	TogoVar
OR4C13_chr11_49947391_49958419	49950019	TTGTGTGT others(13): Show TTGTGTGTGTGTGTGTGTGTG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG02886.hp2 HG03471.hp2 others(3): Show HG01261.hp2 HG02886.hp2 HG03471.hp2 HG03486.hp1 HG03516.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	6	445	0.0135	-20	c.-24 others(31): Show c.-2403_-2384delTGTGTGTGTGTGTGTGTGTG		OR4C13	ENSG00000258817.1	transcript	ENST00000555099.1	protein_coding					2371		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59468670	TGATAGAT others(13): Show TGATAGATAGATAGATAGATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03491.hp2 HG03492.hp2 HG03834.hp1 HG03491.hp2 HG03492.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	3	430	0.0070	-20	c.-51 others(31): Show c.-5194_-5175delGATAGATAGATAGATAGATA		OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding					4644		chr11	TogoVar
OR4E2_chr14_21648835_21672642	21657440	TTTCCTTC others(13): Show TTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00544.hp1 HG00609.hp2 others(38): Show HG00423.hp1 HG00544.hp1 HG00609.hp2 HG00621.hp1 HG00642.hp2 HG01943.hp2 HG02083.hp1 HG02129.hp2 HG02145.hp2 HG02257.hp2 HG02258.hp2 HG02717.hp2 HG02818.hp1 HG02886.hp1 HG03225.hp2 HG03516.hp2 HG03579.hp1 HG03579.hp2 HG03831.hp1 NA18942.hp1 NA18944.hp1 NA18945.hp2 NA18951.hp1 NA18971.hp1 NA18972.hp1 NA18977.hp1 NA18978.hp2 NA18992.hp1 NA18993.hp1 NA18993.hp2 NA18997.hp2 NA19043.hp2 NA19055.hp2 NA19059.hp2 NA19066.hp1 NA19079.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19085.hp2 NA20129.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0001c0003 a0002c0001 others(1): Show a0001c0002 a0001c0003 a0002c0001 a0003c0004	a0001c0002t0001 a0001c0002t0002 a0001c0002t0020 others(8): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0020 a0001c0003t0001 a0001c0003t0006 a0001c0003t0007 a0001c0003t0013 a0002c0001t0001 a0002c0001t0008 a0002c0001t0026 a0003c0004t0003	a0001c0002t0001g0227 a0001c0002t0002g0031 a0001c0002t0002g0057 others(27): Show a0001c0002t0001g0227 a0001c0002t0002g0031 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0188 a0001c0002t0020g0187 a0001c0003t0001g0065 a0001c0003t0001g0203 a0001c0003t0001g0240 a0001c0003t0001g0253 a0001c0003t0001g0260 a0001c0003t0006g0139 a0001c0003t0007g0065 a0001c0003t0013g0223 a0002c0001t0001g0008 a0002c0001t0001g0018 a0002c0001t0001g0045 a0002c0001t0001g0096 a0002c0001t0001g0097 a0002c0001t0001g0098 a0002c0001t0001g0099 a0002c0001t0001g0110 a0002c0001t0001g0122 a0002c0001t0001g0130 a0002c0001t0008g0008 a0002c0001t0026g0018 a0003c0004t0003g0142 a0003c0004t0003g0150 a0003c0004t0003g0153 a0003c0004t0003g0272	41	458	0.0895	-20	c.-10 others(37): Show c.-103+899_-103+918delCTTCCTTCCTTCCTTCCTTC		OR4E2	ENSG00000221977.3	transcript	ENST00000641524.1	protein_coding	2/3					INFO_REALIGN_3_PRIME	chr14	TogoVar
OR4E2_chr14_21648835_21672642	21657488	CTTCCTTC others(13): Show CTTCCTTCCTTCCTTCCTTCT	C C	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0075 a0002c0001t0001g0075	1	458	0.0022	-20	c.-10 others(37): Show c.-103+903_-103+922delCTTCCTTCCTTCCTTCTTTC		OR4E2	ENSG00000221977.3	transcript	ENST00000641524.1	protein_coding	2/3					INFO_REALIGN_3_PRIME	chr14	TogoVar
OR4K2_chr14_19870142_19888932	19872693	ATACACAT others(13): Show ATACACATATATATACCTATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp2 HG02809.hp2 HG02647.hp2 HG02809.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0031 a0002c0002t0011 a0001c0001t0031 a0002c0002t0011	a0001c0001t0031g0002 a0002c0002t0011g0002 a0001c0001t0031g0002 a0002c0002t0011g0002	2	254	0.0079	-20	c.-34 others(31): Show c.-3464_-3445delTACACATATATATACCTATT		OR4K2	ENSG00000165762.3	transcript	ENST00000641885.1	protein_coding					2448		chr14	TogoVar
OR4M1_chr14_19768504_19788696	19777030	ATATATAT others(13): Show ATATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG03130.hp1 HG03704.hp2 others(9): Show HG00323.hp2 HG03130.hp1 HG03704.hp2 NA18940.hp2 NA18944.hp2 NA18978.hp1 NA18978.hp2 NA18988.hp1 NA19010.hp1 NA19030.hp2 NA19078.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0100 a0001c0001t0005g0005 a0001c0001t0002g0100 a0001c0001t0005g0005	12	276	0.0435	-20	c.-29 others(37): Show c.-29-3263_-29-3244delTATATATATATATATATATT		OR4M1	ENSG00000176299.5	transcript	ENST00000641200.1	protein_coding	1/1						chr14	TogoVar
OR4Q3_chr14_19738571_19754469	19749847	CTTCTTTC others(13): Show CTTCTTTCTTTCTTTCTTTCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 HG00642.hp2 HG01109.hp2 others(1): Show HG00597.hp2 HG00642.hp2 HG01109.hp2 HG02055.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0005 a0002c0002t0001 a0002c0002t0005	a0002c0002t0001g0005 a0002c0002t0005g0005 a0002c0002t0001g0005 a0002c0002t0005g0005	4	276	0.0145	-20	c.14 others(31): Show c.1479_*1498delTTCTTTCTTTCTTTCTTTCT		OR4Q3	ENSG00000182652.4	transcript	ENST00000642117.2	protein_coding					379		chr14	TogoVar
OR51A2_chr11_4949772_4960713	4949868	TATACCCA others(13): Show TATACCCATTTCAGGGTATAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0000 a0002c0003t0001g0000	1	344	0.0029	-20	c.48 others(31): Show c.4884_*4903delGTATACCCTGAAATGGGTAT		OR51A2	ENSG00000205496.1	transcript	ENST00000380371.1	protein_coding					4903		chr11	TogoVar
OR51A4_chr11_4937831_4952605	4949868	TATACCCA others(13): Show TATACCCATTTCAGGGTATAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0006 a0001c0001t0006g0006	1	446	0.0022	-20	c.-24 others(31): Show c.-2406_-2387delGTATACCCTGAAATGGGTAT		OR51A4	ENSG00000205497.5	transcript	ENST00000641898.1	protein_coding					2264		chr11	TogoVar
OR51A7_chr11_4898783_4914462	4905961	AGCATTTA others(13): Show AGCATTTATTTGACTAAATAT	A A	intron_variant intron_variant	MODIFIER	HG03490.hp1 HG03490.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0042 a0003c0004t0003g0042	1	452	0.0022	-20	c.-31 others(37): Show c.-31-1361_-31-1342delATATGCATTTATTTGACTAA		OR51A7	ENSG00000176895.9	transcript	ENST00000641490.1	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr11	TogoVar
OR51E1_chr11_4638982_4660488	4656414	TACACACA others(13): Show TACACACACACACACACACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	452	0.0022	-20	c.29 others(31): Show c.2932_*2951delACACACACACACACACACAC		OR51E1	ENSG00000180785.10	transcript	ENST00000396952.6	protein_coding					927		chr11	TogoVar
OR51L1_chr11_4989851_5010536	4996700	TTCCTTCC others(13): Show TTCCTTCCTTCCTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0010 a0005c0006t0010	a0005c0006t0010g0083 a0005c0006t0010g0083	1	470	0.0021	-20	c.-26 others(37): Show c.-261-780_-261-761delCCTTCCTTCCTTTCTTTTCT		OR51L1	ENSG00000176798.3	transcript	ENST00000641819.1	protein_coding	1/2					INFO_REALIGN_3_PRIME	chr11	TogoVar
OR52E6_chr11_5835928_5846897	5838730	GATCTATC others(13): Show GATCTATCTATCTATCTATCT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18967.hp2 NA18967.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	1	450	0.0022	-20	c.22 others(31): Show c.2206_*2225delAGATAGATAGATAGATAGAT		OR52E6	ENSG00000205409.3	transcript	ENST00000329322.5	protein_coding					2197		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794412	CTCTCTCT others(13): Show CTCTCTCTCTCTCTCTATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp2 HG02602.hp2 HG02004.hp2 HG02602.hp2	a0008 a0010 a0008 a0010	a0008c0015 a0010c0012 a0008c0015 a0010c0012	a0008c0015t0001 a0010c0012t0001 a0008c0015t0001 a0010c0012t0001	a0008c0015t0001g0031 a0010c0012t0001g0028 a0008c0015t0001g0031 a0010c0012t0001g0028	2	418	0.0048	-20	c.-33 others(31): Show c.-3366_-3347delTATATAGAGAGAGAGAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3148		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794414	CTCTCTCT others(13): Show CTCTCTCTCTCTCTATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp2 HG01516.hp2 HG01981.hp2 others(11): Show HG01175.hp2 HG01516.hp2 HG01981.hp2 HG03239.hp1 HG03491.hp1 HG03492.hp2 NA18954.hp2 NA18968.hp2 NA18978.hp2 NA18988.hp2 NA19011.hp2 NA19055.hp1 NA19072.hp2 NA19091.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0003 a0003c0003t0001g0003	14	418	0.0335	-20	c.-33 others(31): Show c.-3368_-3349delTATATATAGAGAGAGAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3150		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794416	CTCTCTCT others(13): Show CTCTCTCTCTCTATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG01167.hp2 HG01169.hp2 others(15): Show HG00140.hp1 HG01167.hp2 HG01169.hp2 HG04184.hp2 HG04228.hp2 NA18944.hp2 NA18947.hp1 NA18963.hp2 NA18966.hp2 NA18970.hp2 NA18975.hp1 NA18983.hp1 NA19004.hp2 NA19005.hp2 NA19056.hp1 NA19058.hp2 NA19063.hp2 NA19068.hp2	a0003 a0012 a0003 a0012	a0003c0003 a0012c0013 a0003c0003 a0012c0013	a0003c0003t0001 a0003c0003t0007 a0012c0013t0001 a0003c0003t0001 a0003c0003t0007 a0012c0013t0001	a0003c0003t0001g0003 a0003c0003t0007g0006 a0012c0013t0001g0029 a0003c0003t0001g0003 a0003c0003t0007g0006 a0012c0013t0001g0029	18	418	0.0431	-20	c.-33 others(31): Show c.-3370_-3351delTATATATATAGAGAGAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3152		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794418	CTCTCTCT others(13): Show CTCTCTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp1 NA18747.hp2 NA18942.hp2 others(6): Show HG02109.hp1 NA18747.hp2 NA18942.hp2 NA18980.hp2 NA18988.hp1 NA19000.hp2 NA19056.hp2 NA19064.hp2 NA19091.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0007 a0003c0003t0001 a0003c0003t0007	a0003c0003t0001g0003 a0003c0003t0007g0006 a0003c0003t0001g0003 a0003c0003t0007g0006	9	418	0.0215	-20	c.-33 others(31): Show c.-3372_-3353delTATATATATATAGAGAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3154		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794420	CTCTCTCT others(13): Show CTCTCTCTATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18939.hp1 NA18979.hp2 NA18939.hp1 NA18979.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0006 a0003c0003t0007g0006	2	418	0.0048	-20	c.-33 others(31): Show c.-3374_-3355delTATATATATATATAGAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3156		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794422	CTCTCTAT others(13): Show CTCTCTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG02129.hp2 HG00408.hp2 HG02129.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0003 a0003c0003t0001g0003	2	418	0.0048	-20	c.-33 others(31): Show c.-3376_-3357delTATATATATATATATAGAGA		OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding					3158		chr11	TogoVar
OR52R1_chr11_4798433_4809380	4801504	TTTTATTT others(13): Show TTTTATTTATTTATTTATTTA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03942.hp1 NA18971.hp1 NA18971.hp2 HG03942.hp1 NA18971.hp1 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	3	412	0.0073	-20	c.19 others(31): Show c.1909_*1928delTAAATAAATAAATAAATAAA		OR52R1	ENSG00000279270.2	transcript	ENST00000624978.1	protein_coding					1928		chr11	TogoVar
OR5AP2_chr11_56636489_56647439	56643277	AGAAGGAA others(13): Show AGAAGGAAGGAAGGAAGGAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	438	0.0023	-20	c.-85 others(29): Show c.-858_-839delCTTCCTTCCTTCCTTCCTTC		OR5AP2	ENSG00000172464.4	transcript	ENST00000544374.3	protein_coding					839		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815763	CTCTCTCT others(13): Show CTCTCTCTCTCTATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp1 HG03492.hp1 NA19079.hp2 HG01261.hp1 HG03492.hp1 NA19079.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0000 a0003c0003t0001g0000 a0001c0001t0001g0000 a0003c0003t0001g0000	3	434	0.0069	-20	c.-38 others(31): Show c.-3866_-3847delTCTCTCTCTCTATATATATA		OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding					3866		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815765	CTCTCTCT others(13): Show CTCTCTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02273.hp2 NA18941.hp1 NA19011.hp2 HG02273.hp2 NA18941.hp1 NA19011.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0000 a0003c0003t0001g0000 a0001c0001t0001g0000 a0003c0003t0001g0000	3	434	0.0069	-20	c.-38 others(31): Show c.-3864_-3845delTCTCTCTCTATATATATATA		OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding					3864		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815767	CTCTCTCT others(13): Show CTCTCTCTATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp1 HG01346.hp1 HG01358.hp2 others(7): Show HG00733.hp1 HG01346.hp1 HG01358.hp2 HG03041.hp2 NA18942.hp1 NA18977.hp2 NA18991.hp1 NA19079.hp1 NA20129.hp2 homoSapiens_chm13v2.hp1	a0001 a0005 a0010 a0001 a0005 a0010	a0001c0001 a0005c0005 a0010c0012 a0001c0001 a0005c0005 a0010c0012	a0001c0001t0001 a0005c0005t0001 a0010c0012t0001 a0001c0001t0001 a0005c0005t0001 a0010c0012t0001	a0001c0001t0001g0000 a0005c0005t0001g0000 a0010c0012t0001g0000 a0001c0001t0001g0000 a0005c0005t0001g0000 a0010c0012t0001g0000	10	434	0.0230	-20	c.-38 others(31): Show c.-3862_-3843delTCTCTCTATATATATATATA		OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding					3862		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815769	CTCTCTAT others(13): Show CTCTCTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp2 NA19007.hp2 NA19011.hp1 others(2): Show HG02056.hp2 NA19007.hp2 NA19011.hp1 NA19068.hp1 NA20752.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 a0001c0001t0001 a0002c0002t0001 a0003c0003t0001	a0001c0001t0001g0000 a0002c0002t0001g0000 a0003c0003t0001g0000 a0001c0001t0001g0000 a0002c0002t0001g0000 a0003c0003t0001g0000	5	434	0.0115	-20	c.-38 others(31): Show c.-3860_-3841delTCTCTATATATATATATATA		OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding					3860		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815771	CTCTATAT others(13): Show CTCTATATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG02109.hp2 HG03491.hp2 others(1): Show HG00099.hp1 HG02109.hp2 HG03491.hp2 NA18960.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0005 a0001c0001 a0002c0002 a0005c0005	a0001c0001t0001 a0002c0002t0001 a0005c0005t0001 a0001c0001t0001 a0002c0002t0001 a0005c0005t0001	a0001c0001t0001g0000 a0002c0002t0001g0000 a0005c0005t0001g0000 a0001c0001t0001g0000 a0002c0002t0001g0000 a0005c0005t0001g0000	4	434	0.0092	-20	c.-38 others(31): Show c.-3858_-3839delTCTATATATATATATATATA		OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding					3858		chr11	TogoVar

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