regionname | pos | ref | alt | annotation | impact | samples | ahapids | achapids | acthapids | actghapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
VPS13B_chr8_99008274_99882580 | 99593624 | ACTATTCA others(2006): Show |
A | intron_variant | MODIFIER | NA18522.hp1 | a0001 | a0001c0021 | a0001c0021t0001 | a0001c0021t0001g0122 | 1 | 134 | 0.0075 | -2013 | c.522 others(21): Show |
VPS13B | ENSG00000132549.20 | transcript | ENST00000357162.7 | protein_coding | 33/61 | INFO_REALIGN_3_PRIME | chr8 | TogoVar | |||||
OR2W3_chr1_247890587_247901531 | 247892317 | TACATTTA others(2005): Show |
T | upstream_gene_variant | MODIFIER | HG00099.hp1 HG00323.hp1 HG00438.hp1 others(61): Show |
a0000a0001a0002others(8): Show | a0000c0005a0001c0002a0001c0003others(10): Show | a0000c0005t0000a0001c0002t0000a0001c0003t0000others(10): Show | a0000c0005t0000g0000a0001c0002t0000g0000a0001c0003t0000g0000others(10): Show | 64 | 388 | 0.1650 | -2012 | c.-32 others(11): Show |
OR2W3 | ENSG00000238243.3 | transcript | ENST00000360358.3 | protein_coding | 3269 | chr1 | TogoVar | ||||||
USP17L20_chr4_9253124_9264716 | 9257388 | AAAGACTT others(2004): Show |
A | frameshift_variant others(1): Show |
HIGH | HG02723.hp2 | a0075 | a0075c0112 | a0075c0112t0000 | a0075c0112t0000g0000 | 1 | 234 | 0.0043 | -2011 | c.-73 others(9): Show |
p.Met others(3): Show |
USP17L20 | ENSG00000250745.3 | transcript | ENST00000506151.1 | protein_coding | 1/1 | 1/1593 | 1/530 | chr4 | TogoVar | |||
RPH3AL_chr17_207389_357807 | 253984 | CGTCTGTC others(2003): Show |
C | intron_variant | MODIFIER | HG01496.hp2 | a0001 | a0001c0001 | a0001c0001t0007 | a0001c0001t0007g0097 | 1 | 133 | 0.0075 | -2010 | c.439 others(17): Show |
RPH3AL | ENSG00000181031.16 | transcript | ENST00000331302.12 | protein_coding | 6/9 | chr17 | TogoVar | ||||||
RPH3AL_chr17_207389_357807 | 254200 | ATCCCTAG others(2003): Show |
A | intron_variant | MODIFIER | NA18995.hp2 NA19005.hp2 |
a0001 | a0001c0001a0001c0004 | a0001c0001t0002a0001c0004t0026 | a0001c0001t0002g0029a0001c0004t0026g0013 | 2 | 133 | 0.0150 | -2010 | c.439 others(17): Show |
RPH3AL | ENSG00000181031.16 | transcript | ENST00000331302.12 | protein_coding | 6/9 | chr17 | TogoVar | ||||||
USP17L27_chr4_9339148_9350740 | 9348158 | AAAGACTT others(2003): Show |
A | downstream_gene_variant | MODIFIER | HG02258.hp2 | a0004 | a0004c0002 | a0004c0002t0000 | a0004c0002t0000g0000 | 1 | 90 | 0.0111 | -2010 | c.*24 others(11): Show |
USP17L27 | ENSG00000235780.3 | transcript | ENST00000515574.1 | protein_coding | 2419 | chr4 | TogoVar | ||||||
ZNF888_chr19_52899415_52928428 | 52918944 | GAAAAAAA others(2003): Show |
G | splice_region_variant others(1): Show |
LOW | HG00099.hp2 HG00140.hp2 HG00323.hp1 others(174): Show |
a0001a0002a0003others(5): Show | a0001c0001a0001c0004a0001c0008others(10): Show | a0001c0001t0001a0001c0001t0005a0001c0001t0018others(21): Show | a0001c0001t0001g0006a0001c0001t0001g0015a0001c0001t0001g0062others(148): Show | 177 | 426 | 0.4155 | -2010 | c.-17 others(16): Show |
ZNF888 | ENSG00000213793.6 | transcript | ENST00000638862.2 | protein_coding | 1/4 | chr19 | TogoVar | ||||||
GAL3ST2_chr2_241771822_241809287 | 241805525 | TCCCCCCT others(2002): Show |
T | downstream_gene_variant | MODIFIER | HG01167.hp1 | a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0028 | 1 | 314 | 0.0032 | -2009 | c.*13 others(11): Show |
GAL3ST2 | ENSG00000154252.12 | transcript | ENST00000192314.7 | protein_coding | 1239 | chr2 | TogoVar | ||||||
GALNT9_chr12_132191372_132334589 | 132231252 | TCCCTAGT others(2002): Show |
T | intron_variant | MODIFIER | HG00609.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0040 | 1 | 183 | 0.0055 | -2009 | c.107 others(21): Show |
GALNT9 | ENSG00000182870.13 | transcript | ENST00000328957.13 | protein_coding | 6/10 | chr12 | TogoVar | ||||||
NEU4_chr2_241804193_241822413 | 241805525 | TCCCCCCT others(2002): Show |
T | upstream_gene_variant | MODIFIER | HG01167.hp2 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0092 | 1 | 319 | 0.0031 | -2009 | c.-37 others(11): Show |
NEU4 | ENSG00000204099.12 | transcript | ENST00000407683.6 | protein_coding | 3667 | chr2 | TogoVar | ||||||
ZAN_chr7_100728595_100802797 | 100743614 | TGCCTGTA others(2002): Show |
T | intron_variant | MODIFIER | HG01243.hp2 HG02486.hp2 HG03225.hp2 |
a0014a0028a0051 | a0014c0068a0028c0069a0051c0063 | a0014c0068t0001a0028c0069t0001a0051c0063t0003 | a0014c0068t0001g0092a0028c0069t0001g0091a0051c0063t0003g0090 | 3 | 308 | 0.0097 | -2009 | c.767 others(16): Show |
ZAN | ENSG00000146839.19 | transcript | ENST00000613979.5 | protein_coding | 7/47 | INFO_REALIGN_3_PRIME | chr7 | TogoVar | |||||
ZNF888_chr19_52899415_52928428 | 52918944 | GAAAAAAA others(2002): Show |
G | splice_region_variant others(1): Show |
LOW | HG00280.hp1 HG00408.hp1 HG00408.hp2 others(117): Show |
a0001a0002a0003others(4): Show | a0001c0001a0001c0004a0001c0005others(9): Show | a0001c0001t0001a0001c0001t0005a0001c0004t0001others(20): Show | a0001c0001t0001g0023a0001c0001t0001g0352a0001c0001t0005g0102others(91): Show | 120 | 426 | 0.2817 | -2009 | c.-17 others(16): Show |
ZNF888 | ENSG00000213793.6 | transcript | ENST00000638862.2 | protein_coding | 1/4 | chr19 | TogoVar | ||||||
INSR_chr19_7107265_7299414 | 7250890 | CAGGAACG others(2001): Show |
C | intron_variant | MODIFIER | HG02451.hp2 HG02723.hp2 NA20129.hp1 |
a0001 | a0001c0006a0001c0034 | a0001c0006t0016a0001c0006t0051a0001c0034t0093 | a0001c0006t0016g0104a0001c0006t0051g0031a0001c0034t0093g0162 | 3 | 300 | 0.0100 | -2008 | c.652 others(19): Show |
INSR | ENSG00000171105.14 | transcript | ENST00000302850.10 | protein_coding | 2/21 | chr19 | TogoVar | ||||||
KRT37_chr17_41415547_41429585 | 41426044 | ATGGTGGT others(2000): Show |
A | upstream_gene_variant | MODIFIER | HG00099.hp1 HG01516.hp1 HG01517.hp1 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001 | 3 | 409 | 0.0073 | -2007 | c.-35 others(11): Show |
KRT37 | ENSG00000108417.4 | transcript | ENST00000225550.4 | protein_coding | 1460 | chr17 | TogoVar | ||||||
TOR4A_chr9_137272726_137287641 | 137285634 | ATATATAA others(2000): Show |
A | downstream_gene_variant | MODIFIER | HG00544.hp2 HG00558.hp1 HG02015.hp2 others(15): Show |
a0001a0003 | a0001c0001a0003c0003 | a0001c0001t0005a0003c0003t0005 | a0001c0001t0005g0001a0003c0003t0005g0004 | 18 | 408 | 0.0441 | -2007 | c.*56 others(11): Show |
TOR4A | ENSG00000198113.3 | transcript | ENST00000357503.3 | protein_coding | 2994 | chr9 | TogoVar | ||||||
RNF223_chr1_1065967_1079306 | 1076027 | GTTATGGG others(1999): Show |
G | upstream_gene_variant | MODIFIER | HG02027.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0001 | 1 | 324 | 0.0031 | -2006 | c.-40 others(11): Show |
RNF223 | ENSG00000237330.3 | transcript | ENST00000453464.3 | protein_coding | 1722 | chr1 | TogoVar | ||||||
WDR70_chr5_37374318_37758435 | 37471229 | CCCTCCTA others(1999): Show |
C | intron_variant | MODIFIER | HG01243.hp2 HG02922.hp1 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0025a0001c0001t0001g0030 | 2 | 242 | 0.0083 | -2006 | c.687 others(17): Show |
WDR70 | ENSG00000082068.9 | transcript | ENST00000265107.9 | protein_coding | 7/17 | chr5 | TogoVar | ||||||
SDHA_chr5_213320_262082 | 258388 | CCCTGCCA others(1998): Show |
C | downstream_gene_variant | MODIFIER | NA18965.hp2 NA19081.hp2 |
a0002 | a0002c0003 | a0002c0003t0004 | a0002c0003t0004g0102a0002c0003t0004g0103 | 2 | 266 | 0.0075 | -2005 | c.*19 others(11): Show |
SDHA | ENSG00000073578.18 | transcript | ENST00000264932.11 | protein_coding | 1307 | chr5 | TogoVar | ||||||
GAL3ST2_chr2_241771822_241809287 | 241805491 | CCTCAGCC others(1997): Show |
C | downstream_gene_variant | MODIFIER | HG02451.hp1 | a0002 | a0002c0002 | a0002c0002t0002 | a0002c0002t0002g0153 | 1 | 314 | 0.0032 | -2004 | c.*13 others(11): Show |
GAL3ST2 | ENSG00000154252.12 | transcript | ENST00000192314.7 | protein_coding | 1205 | chr2 | TogoVar | ||||||
LRRC40_chr1_70139805_70210579 | 70182529 | CTAACAAA others(1995): Show |
C | intron_variant | MODIFIER | NA18964.hp2 NA18995.hp1 |
a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0239a0001c0001t0002g0266 | 2 | 320 | 0.0063 | -2002 | c.537 others(16): Show |
LRRC40 | ENSG00000066557.6 | transcript | ENST00000370952.4 | protein_coding | 4/14 | chr1 | TogoVar | ||||||
CBFA2T3_chr16_88869858_88982207 | 88956137 | TGTCAGTT others(1993): Show |
T | intron_variant | MODIFIER | HG02080.hp1 | a0001 | a0001c0006 | a0001c0006t0001 | a0001c0006t0001g0211 | 1 | 284 | 0.0035 | -2000 | c.151 others(19): Show |
CBFA2T3 | ENSG00000129993.15 | transcript | ENST00000268679.9 | protein_coding | 1/11 | chr16 | TogoVar | ||||||
H4C11_chr6_27819092_27829480 | 27826731 | CCCTCACG others(1993): Show |
C | downstream_gene_variant | MODIFIER | HG02148.hp1 | a0000 | a0000c0000 | a0000c0000t0000 | a0000c0000t0000g0000 | 1 | 396 | 0.0025 | -2000 | c.*22 others(11): Show |
H4C11 | ENSG00000197238.5 | transcript | ENST00000355057.3 | protein_coding | 2252 | chr6 | TogoVar | ||||||
H4C12_chr6_27826174_27836560 | 27826731 | CCCTCACG others(1993): Show |
C | downstream_gene_variant | MODIFIER | HG02148.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0000 | 1 | 419 | 0.0024 | -2000 | c.*24 others(11): Show |
H4C12 | ENSG00000273542.2 | transcript | ENST00000611927.2 | protein_coding | 4442 | chr6 | TogoVar |