Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LPA_chr6_160526482_160669275	160584170	TTTCTTCT others(14): Show TTTCTTCTTCTTCTTCTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG03239.hp1 NA18906.hp1 others(2): Show HG02165.hp2 HG03239.hp1 NA18906.hp1 NA18945.hp1 NA19030.hp1	a0002 a0003 a0029 a0002 a0003 a0029	a0002c0002 a0003c0003 a0003c0008 others(1): Show a0002c0002 a0003c0003 a0003c0008 a0029c0016	a0002c0002t0002 a0003c0003t0001 a0003c0008t0001 others(1): Show a0002c0002t0002 a0003c0003t0001 a0003c0008t0001 a0029c0016t0001	a0002c0002t0002g0005 a0003c0003t0001g0075 a0003c0003t0001g0090 others(2): Show a0002c0002t0002g0005 a0003c0003t0001g0075 a0003c0003t0001g0090 a0003c0008t0001g0061 a0029c0016t0001g0060	5	148	0.0338	-21	c.428 others(38): Show c.4289+855_4289+875delGAAGAAGAAGAAGAAGAAGAA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	26/38			chr6	TogoVar
LPA_chr6_160526482_160669275	160584219	TTCTTCTT others(14): Show TTCTTCTTCTTCTTCTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02132.hp2 HG02738.hp2 others(2): Show HG02027.hp2 HG02132.hp2 HG02738.hp2 NA19065.hp2 NA19085.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0046 a0001c0001 a0004c0046	a0001c0001t0002 a0004c0046t0002 a0001c0001t0002 a0004c0046t0002	a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 others(2): Show a0001c0001t0002g0033 a0001c0001t0002g0035 a0001c0001t0002g0036 a0001c0001t0002g0039 a0004c0046t0002g0038	5	148	0.0338	-21	c.428 others(38): Show c.4289+806_4289+826delGGAAGAAGAAGAAGAAGAAGA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	26/38			chr6	TogoVar
LPP_chr3_188149157_188895671	188649555	CTGAGCTA others(14): Show CTGAGCTAGGGAAATACCATCT	C C	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG03195.hp2 HG03540.hp1 others(1): Show HG02896.hp2 HG03195.hp2 HG03540.hp1 NA18522.hp2	a0002 a0002	a0002c0003 a0002c0004 a0002c0003 a0002c0004	a0002c0003t0028 a0002c0003t0052 a0002c0004t0003 others(1): Show a0002c0003t0028 a0002c0003t0052 a0002c0004t0003 a0002c0004t0045	a0002c0003t0028g0061 a0002c0003t0052g0014 a0002c0004t0003g0050 others(1): Show a0002c0003t0028g0061 a0002c0003t0052g0014 a0002c0004t0003g0050 a0002c0004t0045g0026	4	76	0.0526	-21	c.111 others(42): Show c.1113+39714_1113+39734delAGCTAGGGAAATACCATCTTG	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188755809	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0002 a0002c0007t0002	a0002c0007t0002g0073 a0002c0007t0002g0073	1	76	0.0132	-21	c.124 others(40): Show c.1241-4268_1241-4248delAAAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	8/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188785029	CATCATAT others(14): Show CATCATATATATATTCCATCAT	C C	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01074.hp2 HG02738.hp2 HG00673.hp1 HG01074.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0055 a0001c0006t0041 a0001c0006t0066 a0001c0001t0055 a0001c0006t0041 a0001c0006t0066	a0001c0001t0055g0012 a0001c0006t0041g0002 a0001c0006t0066g0021 a0001c0001t0055g0012 a0001c0006t0041g0002 a0001c0006t0066g0021	3	76	0.0395	-21	c.141 others(42): Show c.1410+24750_1410+24770delCATATATATATTCCATCATAT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150559882	TAATTATA others(14): Show TAATTATATATAATTATATATA	T T	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0019 a0019	a0019c0033 a0019c0033	a0019c0033t0001 a0019c0033t0001	a0019c0033t0001g0074 a0019c0033t0001g0074	1	180	0.0056	-21	c.633 others(42): Show c.6330+28145_6330+28165delTATATATAATTATATATAATT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	40/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150658509	CCCTCTCC others(14): Show CCCTCTCCCTCTCCCTCTCCCT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0022 a0022	a0022c0039 a0022c0039	a0022c0039t0001 a0022c0039t0001	a0022c0039t0001g0073 a0022c0039t0001g0073	1	180	0.0056	-21	c.592 others(42): Show c.5921+25021_5921+25041delAGGGAGAGGGAGAGGGAGAGG	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150809852	TACGATAC others(14): Show TACGATACGATACGATACGATA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG03225.hp1 HG02055.hp2 HG03225.hp1	a0006 a0012 a0006 a0012	a0006c0008 a0012c0018 a0006c0008 a0012c0018	a0006c0008t0001 a0012c0018t0001 a0006c0008t0001 a0012c0018t0001	a0006c0008t0001g0113 a0012c0018t0001g0126 a0006c0008t0001g0113 a0012c0018t0001g0126	2	180	0.0111	-21	c.530 others(40): Show c.5306-1475_5306-1455delTATCGTATCGTATCGTATCGT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	31/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46657500	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG06807.hp1 NA19085.hp1 HG03098.hp2 HG06807.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0021 a0001c0002t0001 a0001c0003t0004 a0001c0001t0021 a0001c0002t0001 a0001c0003t0004	a0001c0001t0021g0089 a0001c0002t0001g0110 a0001c0003t0004g0097 a0001c0001t0021g0089 a0001c0002t0001g0110 a0001c0003t0004g0097	3	274	0.0110	-21	c.452 others(38): Show c.452+7177_452+7197delTTTTTTTTTTTTTTTTTTTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115221193	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	238	0.0042	-21	c.349 others(40): Show c.349+12479_349+12499delATATTTTTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH4_chr7_100569011_100591129	100570843	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp2 HG02897.hp1 HG03041.hp1 others(3): Show HG02895.hp2 HG02897.hp1 HG03041.hp1 HG03516.hp1 HG03516.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0005 a0001c0001t0001g0049 a0001c0001t0001g0077 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0049 a0001c0001t0001g0077 a0001c0001t0005g0050 a0001c0001t0005g0175	6	370	0.0162	-21	c.42 others(32): Show c.4243_*4263delTTTTTTTTTTTTTTTTTTTTT	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding		3167		chr7	TogoVar
LRFN5_chr14_41601876_41909549	41850780	TCCTCTGT others(14): Show TCCTCTGTCTTACACAGCACCC	T T	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0023 a0001c0005t0023	a0001c0005t0023g0126 a0001c0005t0023g0126	1	280	0.0036	-21	c.-20 others(40): Show c.-20-35821_-20-35801delTGTCTTACACAGCACCCCCTC	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIT3_chr4_109843107_109877315	109874766	CCTTGTAT others(14): Show CCTTGTATCAGCATTATGAGGA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0002 a0003c0007t0002	a0003c0007t0002g0164 a0003c0007t0002g0164	1	332	0.0030	-21	c.39 others(32): Show c.3978_*3998delCTTGTATCAGCATTATGAGGA	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding		2452		chr4	TogoVar
LRMDA_chr10_75426624_76565168	75590726	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01081.hp2 HG01258.hp1 others(6): Show HG00639.hp2 HG01081.hp2 HG01258.hp1 HG02083.hp1 HG02083.hp2 HG03098.hp2 HG03209.hp2 NA18522.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0010 a0001c0001t0011 a0001c0001t0012 a0001c0002t0001 a0001c0002t0004 a0001c0002t0007	a0001c0001t0001g0037 a0001c0001t0004g0011 a0001c0001t0006g0005 others(6): Show a0001c0001t0001g0037 a0001c0001t0004g0011 a0001c0001t0006g0005 a0001c0001t0010g0008 a0001c0001t0011g0006 a0001c0001t0012g0021 a0001c0002t0001g0017 a0001c0002t0004g0012 a0001c0002t0007g0007	9	46	0.1957	-21	c.131 others(42): Show c.131+152254_131+152274delTTTTTTTTTTTTTTTTTTTTT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76264406	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03471.hp1 NA19030.hp2 HG03471.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0019 a0001c0001t0003 a0001c0002t0019	a0001c0001t0003g0018 a0001c0002t0019g0045 a0001c0001t0003g0018 a0001c0002t0019g0045	2	46	0.0435	-21	c.517 others(40): Show c.517-59964_517-59944delAAAAAAAAAAAAAAAAAAAAA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP11_chr6_149813757_149869359	149816634	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18951.hp2 NA18951.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	334	0.0030	-21	c.38 others(32): Show c.3894_*3914delAAAAAAAAAAAAAAAAAAAAA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding		2122		chr6	TogoVar
LRP11_chr6_149813757_149869359	149835466	GGTCCCAG others(14): Show GGTCCCAGCTACTACGCCTATA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00558.hp1 others(32): Show HG00099.hp1 HG00140.hp1 HG00558.hp1 HG00642.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01071.hp2 HG01167.hp1 HG01168.hp1 HG01257.hp1 HG01257.hp2 HG01358.hp2 HG01361.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01517.hp1 HG02056.hp2 HG02257.hp1 HG02523.hp1 HG02735.hp1 HG03491.hp2 HG03710.hp2 HG03927.hp1 HG04184.hp2 NA18967.hp1 NA18975.hp1 NA19003.hp2 NA19009.hp2 NA19064.hp2 NA19080.hp2 NA20300.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0008 a0001c0009 others(1): Show a0001c0001 a0001c0008 a0001c0009 a0002c0002	a0001c0001t0001 a0001c0008t0001 a0001c0009t0001 others(1): Show a0001c0001t0001 a0001c0008t0001 a0001c0009t0001 a0002c0002t0001	a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0151 others(32): Show a0001c0001t0001g0145 a0001c0001t0001g0147 a0001c0001t0001g0151 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0001g0158 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0179 a0001c0001t0001g0184 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0217 a0001c0001t0001g0228 a0001c0001t0001g0297 a0001c0008t0001g0203 a0001c0008t0001g0214 a0001c0009t0001g0180 a0001c0009t0001g0183 a0002c0002t0001g0062 a0002c0002t0001g0063 a0002c0002t0001g0064 a0002c0002t0001g0065 a0002c0002t0001g0066 a0002c0002t0001g0127	35	334	0.1048	-21	c.125 others(38): Show c.1252+598_1252+618delTATAGGCGTAGTAGCTGGGAC	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	5/6			chr6	TogoVar
LRP1B_chr2_140226423_142136016	140766823	ATATATAT others(14): Show ATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02451.hp2 HG02965.hp1 others(3): Show HG01884.hp1 HG02451.hp2 HG02965.hp1 HG03516.hp1 NA19240.hp1 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0012 a0001c0013 others(3): Show a0001c0001 a0001c0012 a0001c0013 a0001c0027 a0002c0004 a0002c0006	a0001c0001t0006 a0001c0012t0003 a0001c0013t0002 others(3): Show a0001c0001t0006 a0001c0012t0003 a0001c0013t0002 a0001c0027t0001 a0002c0004t0004 a0002c0006t0002	a0001c0001t0006g0024 a0001c0012t0003g0005 a0001c0013t0002g0012 others(3): Show a0001c0001t0006g0024 a0001c0012t0003g0005 a0001c0013t0002g0012 a0001c0027t0001g0021 a0002c0004t0004g0006 a0002c0006t0002g0023	6	28	0.2143	-21	c.575 others(40): Show c.5758+2369_5758+2389delATATATATATATATATATATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	35/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141208876	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0011 a0001c0016t0001g0011	1	28	0.0357	-21	c.850 others(40): Show c.850+20286_851-20294delTTTTTTTTTTTTTTTTTTTTT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	6/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141474024	CTTCCTTC others(14): Show CTTCCTTCCTTCCTTCCTTCCT	C C	intron_variant intron_variant	MODIFIER	HG02723.hp2 NA18522.hp2 HG02723.hp2 NA18522.hp2	a0001 a0001	a0001c0002 a0001c0028 a0001c0002 a0001c0028	a0001c0002t0010 a0001c0028t0002 a0001c0002t0010 a0001c0028t0002	a0001c0002t0010g0022 a0001c0028t0002g0020 a0001c0002t0010g0022 a0001c0028t0002g0020	2	28	0.0714	-21	c.343 others(38): Show c.343+6351_343+6371delAGGAAGGAAGGAAGGAAGGAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141519384	TATATATA others(14): Show TATATATATATATATATATGAA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02630.hp1 HG03225.hp1 HG01884.hp1 HG02630.hp1 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0010 a0001c0025 a0002c0004 a0001c0010 a0001c0025 a0002c0004	a0001c0010t0011 a0001c0025t0005 a0002c0004t0004 a0001c0010t0011 a0001c0025t0005 a0002c0004t0004	a0001c0010t0011g0028 a0001c0025t0005g0018 a0002c0004t0004g0006 a0001c0010t0011g0028 a0001c0025t0005g0018 a0002c0004t0004g0006	3	28	0.1071	-21	c.206 others(40): Show c.206-38872_206-38852delTTCATATATATATATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP5_chr11_68307591_68454275	68380663	CGCAGTGG others(14): Show CGCAGTGGGGCGTGTCCTGCAT	C C	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp2 HG02738.hp1 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0143 a0001c0001t0001g0067 a0001c0001t0001g0143	2	212	0.0094	-21	c.101 others(40): Show c.1016-5642_1016-5622delGTGTCCTGCATGCAGTGGGGC	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	5/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP6_chr12_12111025_12272044	12150549	AATGTAAG others(14): Show AATGTAAGGAAAAAGACTTCAT	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0077 a0001c0008t0077	a0001c0008t0077g0195 a0001c0008t0077g0195	1	262	0.0038	-21	c.299 others(38): Show c.2994+266_2994+286delATGAAGTCTTTTTCCTTACAT	LRP6	ENSG00000070018.9	transcript	ENST00000261349.9	protein_coding	13/22			chr12	TogoVar
LRPAP1_chr4_3498612_3537422	3532173	CCAGGCCC others(14): Show CCAGGCCCCGCTCCACCGACCG	C C	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01070.hp2 HG01256.hp2 others(24): Show HG00609.hp1 HG01070.hp2 HG01256.hp2 HG01361.hp1 HG01496.hp2 HG01928.hp1 HG01952.hp2 HG01975.hp2 HG01981.hp1 HG01993.hp2 HG02148.hp1 HG02165.hp2 HG02258.hp2 HG02451.hp1 HG02602.hp2 HG02809.hp1 HG03239.hp2 HG03654.hp1 HG03669.hp1 HG03688.hp1 HG03710.hp1 HG04228.hp2 NA18952.hp2 NA18990.hp2 NA19010.hp2 NA19055.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0001t0025 a0001c0001t0043 others(7): Show a0001c0001t0001 a0001c0001t0025 a0001c0001t0043 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0086 a0001c0001t0087 a0001c0007t0049 a0001c0007t0119	a0001c0001t0001g0009 a0001c0001t0001g0023 a0001c0001t0001g0058 others(16): Show a0001c0001t0001g0009 a0001c0001t0001g0023 a0001c0001t0001g0058 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0304 a0001c0001t0025g0294 a0001c0001t0025g0295 a0001c0001t0025g0298 a0001c0001t0043g0300 a0001c0001t0043g0303 a0001c0001t0057g0297 a0001c0001t0058g0296 a0001c0001t0059g0299 a0001c0001t0086g0302 a0001c0001t0087g0301 a0001c0007t0049g0059 a0001c0007t0119g0305	27	420	0.0643	-21	c.204 others(34): Show c.204+15_204+35delCGGTCGGTGGAGCGGGGCCTG	LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding	1/7			chr4	TogoVar
LRRC17_chr7_102908000_102950111	102918080	AATGAAGA others(14): Show AATGAAGAGAGAATGACAGCAG	A A	intron_variant intron_variant	MODIFIER	NA19001.hp2 NA19001.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0207 a0002c0002t0001g0207	1	398	0.0025	-21	c.-14 others(40): Show c.-141+4937_-141+4957delTGAAGAGAGAATGACAGCAGA	LRRC17	ENSG00000128606.13	transcript	ENST00000339431.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
LRRC19_chr9_26988136_27010672	26992676	GGGCGAGA others(14): Show GGGCGAGACTTTGTCTCAAAAA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0131 a0001c0001t0029g0131	1	390	0.0026	-21	c.28 others(32): Show c.2824_*2844delTTTTTGAGACAAAGTCTCGCC	LRRC19	ENSG00000184434.8	transcript	ENST00000380055.6	protein_coding		459		chr9	TogoVar
LRRC1_chr6_53790005_53929125	53807747	TCAACAAC others(14): Show TCAACAACAACAACAACAACAA	T T	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03195.hp1 HG03130.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0002 a0001c0009t0003 a0001c0001t0002 a0001c0009t0003	a0001c0001t0002g0037 a0001c0009t0003g0088 a0001c0001t0002g0037 a0001c0009t0003g0088	2	370	0.0054	-21	c.159 others(40): Show c.159+12347_159+12367delACAACAACAACAACAACAACA	LRRC1	ENSG00000137269.15	transcript	ENST00000370888.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr6	TogoVar
LRRC27_chr10_132327193_132386508	132385112	GCCTCCTG others(14): Show GCCTCCTGCCCTGTGCGTGGAT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0011 a0002c0004t0011	a0002c0004t0011g0010 a0002c0004t0011g0010	1	290	0.0035	-21	c.98 others(32): Show c.9871_*9891delCCTCCTGCCCTGTGCGTGGAT	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding		3605		chr10	TogoVar
LRRC28_chr15_99246481_99395729	99293593	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0217 a0001c0001t0217	a0001c0001t0217g0300 a0001c0001t0217g0300	1	332	0.0030	-21	c.385 others(38): Show c.385+5662_385+5682delAAAAAAAAAAAAAAAAAAAAA	LRRC28	ENSG00000168904.15	transcript	ENST00000301981.8	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC38_chr1_13469973_13519003	13481754	TTTCTTTC others(14): Show TTTCTTTCCCTCTCTCTCCCTC	T T	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0251 a0002c0002t0004g0251	1	448	0.0022	-21	c.632 others(38): Show c.632-5676_632-5656delGAGGGAGAGAGAGGGAAAGAA	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1			chr1	TogoVar
LRRC39_chr1_100143448_100183256	100167778	AAATAATA others(14): Show AAATAATAATAATAATAATAAT	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG03927.hp1 NA20752.hp1 HG01167.hp2 HG03927.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0055 a0001c0001t0001g0015 a0001c0001t0001g0055	3	288	0.0104	-21	c.113 others(36): Show c.113+605_113+625delATTATTATTATTATTATTATT	LRRC39	ENSG00000122477.14	transcript	ENST00000370137.6	protein_coding	3/9			chr1	TogoVar
LRRC40_chr1_70139805_70210579	70209740	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03490.hp1 HG03492.hp1 HG04115.hp2 others(1): Show HG03490.hp1 HG03492.hp1 HG04115.hp2 NA20905.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0007c0008 a0001c0001 a0007c0008	a0001c0001t0002 a0007c0008t0002 a0001c0001t0002 a0007c0008t0002	a0001c0001t0002g0194 a0001c0001t0002g0196 a0001c0001t0002g0197 others(1): Show a0001c0001t0002g0194 a0001c0001t0002g0196 a0001c0001t0002g0197 a0007c0008t0002g0195	4	320	0.0125	-21	c.-42 others(32): Show c.-4221_-4201delAAAAAAAAAAAAAAAAAAAAA	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding		4162		chr1	TogoVar
LRRC41_chr1_46272462_46308616	46305507	TGGATCGG others(14): Show TGGATCGGGAGGCCGAGGCGGG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18974.hp2 NA19059.hp1 NA18974.hp2 NA19059.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0112 a0002c0002t0002g0113 a0002c0002t0002g0112 a0002c0002t0002g0113	2	370	0.0054	-21	c.-22 others(32): Show c.-2206_-2186delCCCGCCTCGGCCTCCCGATCC	LRRC41	ENSG00000132128.18	transcript	ENST00000617190.5	protein_coding		1892		chr1	TogoVar
LRRC49_chr15_70887826_71058658	71058450	CTTTCTTT others(14): Show CTTTCTTTTCTTTCTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG01258.hp2 HG01257.hp1 HG01258.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0010	a0002c0002t0010g0033 a0002c0002t0010g0034 a0002c0002t0010g0033 a0002c0002t0010g0034	2	262	0.0076	-21	c.88 others(32): Show c.8839_*8859delTTTCTTTTCTTTCTTTTTTTT	LRRC49	ENSG00000137821.12	transcript	ENST00000260382.10	protein_coding		4793		chr15	TogoVar
LRRC4B_chr19_50511892_50573435	50520203	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	360	0.0028	-21	c.298 others(36): Show c.298-809_298-789delTTTTTTTTTTTTTTTTTTTTT	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4B_chr19_50511892_50573435	50520230	AAAAAAAA others(14): Show AAAAAAAAAAAAAAAAAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01258.hp2 HG01515.hp2 others(3): Show HG01069.hp2 HG01258.hp2 HG01515.hp2 HG02451.hp2 HG02886.hp2 HG03579.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0091 a0001c0001t0001g0287 a0001c0001t0001g0311 others(3): Show a0001c0001t0001g0091 a0001c0001t0001g0287 a0001c0001t0001g0311 a0002c0002t0001g0175 a0002c0002t0001g0229 a0002c0002t0001g0308	6	360	0.0167	-21	c.298 others(36): Show c.298-836_298-816delCTTCTTTTTTTTTTTTTTTTT	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40630330	CTCTTCTT others(14): Show CTCTTCTTCTTCTTCTTCTTCT	C C	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	48	0.0208	-21	c.-27 others(42): Show c.-270+17791_-270+17811delAGAAGAAGAAGAAGAAGAAGA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC53_chr1_74464376_74517611	74500603	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp2 HG00735.hp2 others(23): Show HG00558.hp1 HG00558.hp2 HG00735.hp2 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG01175.hp2 HG01192.hp1 HG01515.hp1 HG02027.hp1 HG03453.hp1 HG03669.hp1 HG03688.hp2 NA18945.hp1 NA18952.hp1 NA18968.hp2 NA18975.hp1 NA18975.hp2 NA18980.hp1 NA19007.hp1 NA19011.hp2 NA19066.hp2 NA19068.hp2 NA19078.hp1 NA19078.hp2 NA21309.hp1	a0001 a0002 a0016 others(1): Show a0001 a0002 a0016 a0019	a0001c0001 a0002c0002 a0016c0014 others(1): Show a0001c0001 a0002c0002 a0016c0014 a0019c0023	a0001c0001t0001 a0002c0002t0002 a0016c0014t0001 others(1): Show a0001c0001t0001 a0002c0002t0002 a0016c0014t0001 a0019c0023t0001	a0001c0001t0001g0008 a0001c0001t0001g0048 a0001c0001t0001g0081 others(22): Show a0001c0001t0001g0008 a0001c0001t0001g0048 a0001c0001t0001g0081 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0091 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0105 a0001c0001t0001g0112 a0001c0001t0001g0133 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0150 a0001c0001t0001g0163 a0001c0001t0001g0165 a0001c0001t0001g0173 a0001c0001t0001g0189 a0001c0001t0001g0252 a0001c0001t0001g0267 a0001c0001t0001g0302 a0002c0002t0002g0282 a0016c0014t0001g0224 a0019c0023t0001g0144	26	342	0.0760	-21	c.-27 others(40): Show c.-27+11902_-27+11922delTTTTTTTTTTTTTTTTTTTTT	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC53_chr1_74464376_74517611	74509747	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0013 a0013	a0013c0020 a0013c0020	a0013c0020t0001 a0013c0020t0001	a0013c0020t0001g0223 a0013c0020t0001g0223	1	342	0.0029	-21	c.-27 others(38): Show c.-27+2758_-27+2778delAAAAAAAAAAAAAAAAAAAAA	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC69_chr8_91097619_91224257	91118351	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01081.hp1 HG01123.hp1 others(17): Show HG00558.hp2 HG01081.hp1 HG01123.hp1 HG02280.hp1 HG03486.hp1 NA18942.hp2 NA18966.hp2 NA18969.hp1 NA18972.hp1 NA18984.hp2 NA18998.hp1 NA19005.hp1 NA19006.hp2 NA19030.hp1 NA19058.hp1 NA19064.hp2 NA19065.hp2 NA19081.hp2 NA19091.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0162 a0001c0001t0001g0177 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0162 a0001c0001t0001g0177 a0001c0001t0001g0288 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0303 a0001c0003t0001g0287 a0001c0003t0001g0302	20	318	0.0629	-21	c.184 others(38): Show c.184-6119_184-6099delAAAAAAAAAAAAAAAAAAAAA	LRRC69	ENSG00000214954.9	transcript	ENST00000448384.3	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRC7_chr1_69562922_70149364	69584279	TCTAGAAG others(14): Show TCTAGAAGACTTGGAAGTTTTA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02647.hp2 others(3): Show HG01884.hp1 HG02055.hp2 HG02647.hp2 HG02970.hp1 HG02976.hp2 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0011 a0001c0001t0019 others(2): Show a0001c0001t0003 a0001c0001t0011 a0001c0001t0019 a0001c0001t0027 a0001c0001t0055	a0001c0001t0003g0041 a0001c0001t0011g0035 a0001c0001t0011g0042 others(3): Show a0001c0001t0003g0041 a0001c0001t0011g0035 a0001c0001t0011g0042 a0001c0001t0019g0038 a0001c0001t0027g0040 a0001c0001t0055g0039	6	108	0.0556	-21	c.2+1 others(36): Show c.2+15642_2+15662delGAAGACTTGGAAGTTTTACTA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8B_chr1_89519829_89602861	89541710	CAAAAAAA others(14): Show CAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01515.hp2 HG01517.hp2 others(6): Show HG01175.hp2 HG01515.hp2 HG01517.hp2 HG02257.hp1 HG02683.hp2 HG02922.hp2 NA18960.hp2 NA19240.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0005 a0001c0001t0025 a0001c0003t0001 others(1): Show a0001c0001t0005 a0001c0001t0025 a0001c0003t0001 a0001c0003t0005	a0001c0001t0005g0008 a0001c0001t0005g0266 a0001c0001t0005g0267 others(5): Show a0001c0001t0005g0008 a0001c0001t0005g0266 a0001c0001t0005g0267 a0001c0001t0005g0269 a0001c0001t0005g0271 a0001c0001t0025g0008 a0001c0003t0001g0194 a0001c0003t0005g0268	9	324	0.0278	-21	c.-24 others(42): Show c.-241+16707_-241+16727delAAAAAAAAAAAAAAAAAAAAA	LRRC8B	ENSG00000197147.15	transcript	ENST00000330947.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRIQ1_chr12_85031351_85250105	85167885	ACGCAGCT others(14): Show ACGCAGCTAGCATTCATACAAT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00558.hp2 HG00621.hp1 others(29): Show HG00544.hp1 HG00558.hp2 HG00621.hp1 HG02040.hp2 HG02080.hp2 HG02135.hp2 HG02630.hp1 HG02922.hp1 HG02922.hp2 HG03540.hp1 HG03831.hp1 HG03927.hp1 NA18940.hp1 NA18957.hp2 NA18968.hp2 NA18972.hp1 NA18978.hp1 NA18980.hp2 NA18982.hp1 NA18986.hp1 NA19002.hp2 NA19003.hp2 NA19004.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19063.hp2 NA19065.hp1 NA19070.hp1 NA19074.hp2 NA19079.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0123 a0001c0001t0002g0124 others(29): Show a0001c0001t0002g0012 a0001c0001t0002g0123 a0001c0001t0002g0124 a0001c0001t0002g0125 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0128 a0001c0001t0002g0129 a0001c0001t0002g0130 a0001c0001t0002g0131 a0001c0001t0002g0132 a0001c0001t0002g0133 a0001c0001t0002g0134 a0001c0001t0002g0135 a0001c0001t0002g0136 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0140 a0001c0001t0002g0141 a0001c0001t0002g0142 a0001c0001t0002g0143 a0001c0001t0002g0144 a0001c0001t0002g0145 a0001c0001t0002g0146 a0001c0001t0002g0147 a0001c0001t0002g0148 a0001c0001t0002g0149 a0001c0001t0002g0150 a0001c0001t0002g0151 a0001c0001t0002g0152 a0001c0001t0002g0156	32	228	0.1404	-21	c.482 others(40): Show c.4822+7174_4822+7194delCAGCTAGCATTCATACAATCG	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ3_chr1_74021015_74203176	74060200	CTTCTTCT others(14): Show CTTCTTCTTCTTCTTCTTCTTG	C C	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01081.hp2 HG01106.hp2 others(21): Show HG00544.hp2 HG01081.hp2 HG01106.hp2 HG01361.hp2 HG01433.hp1 HG01517.hp1 HG01975.hp1 HG01981.hp1 HG02027.hp1 HG02027.hp2 HG02071.hp1 HG02148.hp2 HG02165.hp2 HG02818.hp2 HG03669.hp1 NA18906.hp1 NA18947.hp1 NA18953.hp1 NA18964.hp1 NA18982.hp1 NA19057.hp1 NA19058.hp1 NA19062.hp2 NA20905.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0005 a0001c0001 a0003c0003 a0006c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0003c0003t0001 a0003c0003t0009 a0006c0005t0004	a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0227 others(21): Show a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0227 a0001c0001t0001g0243 a0001c0001t0002g0023 a0001c0001t0002g0024 a0001c0001t0002g0029 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0038 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0061 a0001c0001t0002g0063 a0001c0001t0002g0069 a0001c0001t0002g0070 a0001c0001t0002g0081 a0001c0001t0002g0083 a0001c0001t0002g0092 a0001c0001t0002g0094 a0001c0001t0011g0095 a0003c0003t0001g0173 a0003c0003t0009g0004 a0006c0005t0004g0159	24	274	0.0876	-21	c.997 others(40): Show c.997+14440_997+14460delCAAGAAGAAGAAGAAGAAGAA	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	6/7			chr1	TogoVar
LRRN1_chr3_3794431_3854834	3834533	TATATATA others(14): Show TATATATATATATATATATATG	T T	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0346 a0001c0001t0003g0346	1	422	0.0024	-21	c.-27 others(40): Show c.-278-9820_-278-9800delATATATATATGATATATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRTM4_chr2_76742685_77527376	77083783	CTTTTTTT others(14): Show CTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG02486.hp1 HG02886.hp1 others(3): Show HG00735.hp1 HG02486.hp1 HG02886.hp1 HG02886.hp2 HG02965.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0017 a0001c0001t0001g0062 a0001c0001t0001g0113 others(3): Show a0001c0001t0001g0017 a0001c0001t0001g0062 a0001c0001t0001g0113 a0001c0001t0002g0086 a0001c0001t0003g0060 a0001c0001t0003g0061	6	128	0.0469	-21	c.155 others(44): Show c.1552-334888_1552-334868delAAAAAAAAAAAAAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77299235	CTCTCTCT others(14): Show CTCTCTCTTTATCTATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp2 HG01884.hp1 others(8): Show HG01243.hp1 HG01243.hp2 HG01884.hp1 HG02109.hp1 HG02486.hp1 HG02886.hp1 HG02965.hp1 HG03209.hp1 HG03225.hp2 HG06807.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008	a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0113 others(8): Show a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0113 a0001c0001t0002g0008 a0001c0001t0002g0059 a0001c0001t0002g0118 a0001c0001t0002g0123 a0001c0001t0003g0088 a0001c0001t0003g0117 a0001c0001t0006g0082 a0001c0001t0008g0126	11	128	0.0859	-21	c.155 others(44): Show c.1551+219062_1551+219082delATATATATAGATAAAGAGAGA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77472840	GAATGAAA others(14): Show GAATGAAATAAAGGAAGGAATA	G G	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01192.hp2 HG02109.hp1 others(7): Show HG01074.hp1 HG01192.hp2 HG02109.hp1 HG02258.hp1 HG02280.hp1 HG02886.hp2 HG03098.hp2 HG03225.hp2 NA18965.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0038 a0001c0001t0001g0068 a0001c0001t0001g0071 others(7): Show a0001c0001t0001g0038 a0001c0001t0001g0068 a0001c0001t0001g0071 a0001c0001t0001g0116 a0001c0001t0002g0036 a0001c0001t0002g0086 a0001c0001t0002g0118 a0001c0001t0002g0119 a0001c0001t0003g0117 a0001c0001t0004g0037	10	128	0.0781	-21	c.155 others(42): Show c.1551+45457_1551+45477delTATTCCTTCCTTTATTTCATT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRWD1_chr7_102459984_102478168	102464284	CCTGGGTT others(14): Show CCTGGGTTGCAGCGATCCTTGA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0216 a0001c0001t0001g0216	1	428	0.0023	-21	c.-79 others(30): Show c.-796_-776delCTGGGTTGCAGCGATCCTTGA	LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding		699		chr7	TogoVar
LRWD1_chr7_102459984_102478168	102466405	TGCTACTT others(14): Show TGCTACTTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0008 a0008	a0008c0029 a0008c0029	a0008c0029t0002 a0008c0029t0002	a0008c0029t0002g0107 a0008c0029t0002g0107	1	428	0.0023	-21	c.432 others(36): Show c.432+136_432+156delGCTACTTTATTTATTTATTTA	LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding	3/14			chr7	TogoVar

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