Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZWILCH_chr15_66500326_66555130	66509822	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00544.hp2 others(56): Show HG00099.hp2 HG00140.hp1 HG00544.hp2 HG00558.hp1 HG00621.hp2 HG00673.hp2 HG00733.hp2 HG01243.hp1 HG01255.hp2 HG01884.hp1 HG02056.hp2 HG02071.hp2 HG02109.hp1 HG02165.hp1 HG02273.hp2 HG02293.hp2 HG02622.hp2 HG02630.hp2 HG02683.hp2 HG02698.hp2 HG02922.hp1 HG03239.hp1 HG03540.hp1 HG03834.hp2 HG03942.hp2 NA18943.hp1 NA18946.hp1 NA18949.hp1 NA18953.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp1 NA18965.hp2 NA18968.hp2 NA18973.hp2 NA18977.hp1 NA18979.hp2 NA18986.hp2 NA18991.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp2 NA18998.hp2 NA19000.hp2 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19056.hp1 NA19057.hp1 NA19065.hp1 NA19072.hp1 NA19077.hp1 NA19079.hp1 NA19083.hp1 NA19086.hp1 NA19090.hp1 NA19091.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0008 a0003c0003 a0001c0001 a0001c0008 a0003c0003	a0001c0001t0001 a0001c0001t0007 a0001c0008t0001 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0008t0001 a0003c0003t0001	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 others(53): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0334 a0001c0001t0007g0062 a0001c0008t0001g0080 a0003c0003t0001g0042	59	101	0.5842	-22	c.105 others(37): Show c.105+957_105+978delATATATATATATATATATATAT		ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	2/18					INFO_REALIGN_3_PRIME	chr15	TogoVar
	ZWINT_chr10_56352227_56366259	56352421	CGCCACCA others(15): Show CGCCACCATCTTGGGAGCGGCCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19240.hp2 NA20300.hp1 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0001 a0001c0009t0001	a0001c0009t0001g0017 a0001c0009t0001g0017	2	438	0.0046	-22	c.57 others(33): Show c.5784_*5805delAGGCCGCTCCCAAGATGGTGGC		ZWINT	ENSG00000122952.17	transcript	ENST00000373944.8	protein_coding					4805		chr10	TogoVar
	ZWINT_chr10_56352227_56366259	56365723	TATATACA others(15): Show TATATACACACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0005 a0003c0003t0001g0005	1	171	0.0058	-22	c.-45 others(33): Show c.-4509_-4488delGTGTGTGTGTGTGTGTGTATAT		ZWINT	ENSG00000122952.17	transcript	ENST00000373944.8	protein_coding					4465		chr10	TogoVar
	ZYG11A_chr1_52837760_52899998	52842419	ATGTGTGT others(15): Show ATGTGTGTGTGTGTGTGTGTGTG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0004 a0001c0016t0004	a0001c0016t0004g0136 a0001c0016t0004g0136	1	79	0.0127	-22	c.-46 others(31): Show c.-464_-443delTGTGTGTGTGTGTGTGTGTGTG		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding					340		chr1	TogoVar
	ZYG11A_chr1_52837760_52899998	52846308	TTTTATAT others(15): Show TTTTATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02055.hp1 HG02109.hp2 others(10): Show HG01884.hp2 HG02055.hp1 HG02109.hp2 HG02572.hp2 HG02622.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp2 HG03831.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0019 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0019 a0001c0001t0020	a0001c0001t0001g0273 a0001c0001t0001g0279 a0001c0001t0004g0001 others(9): Show a0001c0001t0001g0273 a0001c0001t0001g0279 a0001c0001t0004g0001 a0001c0001t0004g0026 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0019g0037 a0001c0001t0020g0033	13	186	0.0699	-22	c.90+ others(37): Show c.90+3337_90+3358delTTATATATATATATATATATAT		ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52797104	GTATATAT others(15): Show GTATATATTTATATATTATATAT	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02895.hp2 HG03139.hp2 others(1): Show HG02257.hp1 HG02895.hp2 HG03139.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0075 a0001c0001t0076 a0001c0001t0034 a0001c0001t0075 a0001c0001t0076	a0001c0001t0034g0179 a0001c0001t0034g0182 a0001c0001t0075g0158 others(1): Show a0001c0001t0034g0179 a0001c0001t0034g0182 a0001c0001t0075g0158 a0001c0001t0076g0157	4	346	0.0116	-22	c.148 others(39): Show c.1485+372_1485+393delTTATATATTATATATTATATAT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817799	ATATATAT others(15): Show ATATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0235 a0001c0002t0003g0235	1	324	0.0031	-22	c.204 others(41): Show c.2044+1172_2044+1193delATATATATATATATATTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817809	ATATATAT others(15): Show ATATATATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0077 a0001c0001t0077	a0001c0001t0077g0340 a0001c0001t0077g0340	1	331	0.0030	-22	c.204 others(41): Show c.2044+1182_2044+1203delATATATTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817811	ATATATTT others(15): Show ATATATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0076 a0001c0001t0032g0076	1	335	0.0030	-22	c.204 others(41): Show c.2044+1184_2044+1205delATATTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(15): Show ATATTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01106.hp1 NA18971.hp2 others(2): Show HG00597.hp2 HG01106.hp1 NA18971.hp2 NA18986.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 others(2): Show a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0132 a0001c0001t0001g0348	5	335	0.0149	-22	c.204 others(41): Show c.2044+1186_2044+1207delATTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00738.hp1 others(7): Show HG00140.hp1 HG00323.hp2 HG00738.hp1 HG01515.hp1 HG01516.hp1 HG02109.hp1 HG03831.hp1 NA18988.hp1 NA19009.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0027 a0001c0001t0001 a0001c0001t0010 a0001c0001t0027	a0001c0001t0001g0090 a0001c0001t0001g0111 a0001c0001t0001g0113 others(7): Show a0001c0001t0001g0090 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0118 a0001c0001t0001g0124 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0010g0265 a0001c0001t0027g0137 a0001c0001t0027g0140	10	288	0.0347	-22	c.204 others(41): Show c.2044+1205_2044+1226delTTTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4036801	ACACACAC others(15): Show ACACACACACACACACACTCTCT	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0004 a0004	a0004c0061 a0004c0061	a0004c0061t0005 a0004c0061t0005	a0004c0061t0005g0238 a0004c0061t0005g0238	1	264	0.0038	-22	c.630 others(41): Show c.6307-2531_6307-2510delAGAGAGTGTGTGTGTGTGTGTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	37	0.0270	-22	c.106 others(39): Show c.1066+554_1066+575delATATATATATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4123268	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02258.hp2 HG02630.hp2 others(3): Show HG01109.hp1 HG02258.hp2 HG02630.hp2 HG03041.hp2 HG03195.hp2 HG03209.hp1	a0005 a0005	a0005c0011 a0005c0011	a0005c0011t0003 a0005c0011t0003	a0005c0011t0003g0250 a0005c0011t0003g0251 a0005c0011t0003g0252 others(3): Show a0005c0011t0003g0250 a0005c0011t0003g0251 a0005c0011t0003g0252 a0005c0011t0003g0253 a0005c0011t0003g0254 a0005c0011t0003g0255	6	42	0.1429	-22	c.499 others(37): Show c.499+617_499+638delATATATATATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54						chr17	TogoVar