Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ZP4_chr1_237877404_237895922	237883967	AACACACA others(15): Show AACACACACACACACAAACACAC	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01175.hp1 HG01975.hp1 others(5): Show HG00733.hp2 HG01175.hp1 HG01975.hp1 HG02602.hp2 HG02735.hp1 HG03704.hp2 HG03831.hp1 NA18976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0188 a0001c0001t0001g0200 others(4): Show a0001c0001t0001g0021 a0001c0001t0001g0188 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0239 a0001c0001t0001g0305	8	448	0.0179	-22	c.139 others(39): Show c.1390+780_1390+801delGTGTGTTTGTGTGTGTGTGTGT	ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11			chr1	TogoVar
ZP4_chr1_237877404_237895922	237883995	CACACACA others(15): Show CACACACACACACACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG01934.hp2 others(10): Show HG01515.hp2 HG01517.hp1 HG01934.hp2 HG02155.hp2 HG03490.hp2 HG03492.hp2 NA18942.hp2 NA18948.hp1 NA18959.hp2 NA18964.hp2 NA18986.hp2 NA18991.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0081 a0001c0001t0001g0144 others(9): Show a0001c0001t0001g0016 a0001c0001t0001g0081 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0186 a0001c0001t0001g0187	13	448	0.0290	-22	c.139 others(39): Show c.1390+752_1390+773delTTGTGTGTGTGTGTGTGTGTGT	ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11			chr1	TogoVar
ZP4_chr1_237877404_237895922	237884011	CACACAAA others(15): Show CACACAAACACACACACACACAA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG01978.hp1 others(5): Show HG00280.hp2 HG00408.hp1 HG01978.hp1 HG02056.hp1 HG03017.hp2 NA18943.hp2 NA19058.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 others(5): Show a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0124 a0001c0001t0001g0233 a0001c0001t0001g0296 a0001c0001t0001g0328 a0001c0001t0001g0329	8	448	0.0179	-22	c.139 others(39): Show c.1390+736_1390+757delTTGTGTGTGTGTGTGTTTGTGT	ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11			chr1	TogoVar
ZPBP_chr7_49932441_50098246	49970466	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG03704.hp1 NA19001.hp1 HG01109.hp1 HG03704.hp1 NA19001.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0247 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0247	3	278	0.0108	-22	c.961 others(41): Show c.961+12854_961+12875delAAAAAAAAAAAAAAAAAAAAAA	ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	7/7			chr7	TogoVar
ZPBP_chr7_49932441_50098246	49981673	TATTATAT others(15): Show TATTATATATAATAATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00423.hp2 HG01515.hp1 others(26): Show HG00280.hp2 HG00423.hp2 HG01515.hp1 HG01517.hp2 HG02074.hp1 HG02080.hp1 HG02738.hp2 HG03239.hp2 HG03471.hp1 NA18522.hp2 NA18747.hp1 NA18944.hp1 NA18947.hp2 NA18949.hp2 NA18964.hp2 NA18972.hp2 NA18977.hp1 NA18978.hp1 NA18979.hp2 NA18981.hp1 NA18988.hp2 NA18995.hp1 NA19001.hp2 NA19005.hp1 NA19056.hp1 NA19058.hp2 NA19066.hp1 NA19076.hp2 NA19087.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0005 others(1): Show a0001c0001 a0001c0004 a0001c0005 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0001 a0001c0005t0001 a0002c0002t0002	a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0091 others(26): Show a0001c0001t0001g0086 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0101 a0001c0001t0001g0110 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0136 a0001c0001t0001g0141 a0001c0001t0002g0262 a0001c0001t0002g0263 a0001c0001t0002g0266 a0001c0001t0002g0267 a0001c0001t0002g0268 a0001c0001t0002g0269 a0001c0001t0002g0270 a0001c0001t0002g0271 a0001c0001t0002g0273 a0001c0004t0001g0238 a0001c0004t0001g0239 a0001c0005t0001g0037 a0001c0005t0001g0116 a0002c0002t0002g0254 a0002c0002t0002g0255 a0002c0002t0002g0256 a0002c0002t0002g0257 a0002c0002t0002g0258 a0002c0002t0002g0259 a0002c0002t0002g0260	29	278	0.1043	-22	c.961 others(39): Show c.961+1647_961+1668delTATATATATTATTATATATAAT	ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	7/7			chr7	TogoVar
ZPBP_chr7_49932441_50098246	49987728	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01070.hp2 HG01074.hp2 others(12): Show HG00741.hp2 HG01070.hp2 HG01074.hp2 HG01109.hp1 HG01928.hp1 HG01943.hp1 HG02080.hp2 HG02135.hp1 HG02148.hp1 HG02300.hp1 HG03704.hp1 HG04228.hp2 NA18964.hp1 NA19001.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 others(12): Show a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0111 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0252	15	278	0.0540	-22	c.784 others(39): Show c.784-4231_784-4210delCACACACACACACACACACACA	ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	6/7			chr7	TogoVar
ZPR1_chr11_116768799_116793023	116775627	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00733.hp1 HG01255.hp2 HG01346.hp2 others(7): Show HG00733.hp1 HG01255.hp2 HG01346.hp2 HG01884.hp1 HG02109.hp1 HG02145.hp1 HG02970.hp2 HG03225.hp2 HG03453.hp2 NA18612.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0052 a0001c0001t0106 a0001c0001t0014 a0001c0001t0052 a0001c0001t0106	a0001c0001t0014g0011 a0001c0001t0052g0136 a0001c0001t0106g0069 a0001c0001t0014g0011 a0001c0001t0052g0136 a0001c0001t0106g0069	10	460	0.0217	-22	c.32 others(33): Show c.3276_*3297delTTTTTTTTTTTTTTTTTTTTTT	ZPR1	ENSG00000109917.11	transcript	ENST00000227322.8	protein_coding	14/14	3276		chr11	TogoVar
ZRANB3_chr2_135191969_135536218	135426851	AAAAAAAA others(15): Show AAAAAAAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	214	0.0047	-22	c.162 others(41): Show c.162-36053_162-36032delATATATATATTTTTTTTTTTTT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135426863	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0039 a0003c0004t0002g0039	1	214	0.0047	-22	c.162 others(41): Show c.162-36065_162-36044delATATATATATATATATATATAT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZRANB3_chr2_135191969_135536218	135493098	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01256.hp2 HG01884.hp1 others(13): Show HG01070.hp1 HG01256.hp2 HG01884.hp1 HG01981.hp1 HG02145.hp1 HG02258.hp1 HG02896.hp1 HG03130.hp1 HG04199.hp1 NA18941.hp1 NA18967.hp1 NA18971.hp2 NA18990.hp1 NA18993.hp2 NA19043.hp1 NA19083.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0002c0003 others(2): Show a0001c0001 a0002c0002 a0002c0003 a0002c0007 a0005c0008	a0001c0001t0001 a0001c0001t0005 a0001c0001t0016 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0016 a0002c0002t0002 a0002c0002t0006 a0002c0002t0015 a0002c0003t0003 a0002c0007t0002 a0005c0008t0009	a0001c0001t0001g0131 a0001c0001t0001g0158 a0001c0001t0001g0172 others(13): Show a0001c0001t0001g0131 a0001c0001t0001g0158 a0001c0001t0001g0172 a0001c0001t0001g0188 a0001c0001t0005g0135 a0001c0001t0005g0138 a0001c0001t0005g0139 a0001c0001t0005g0140 a0001c0001t0016g0213 a0002c0002t0002g0206 a0002c0002t0006g0010 a0002c0002t0015g0112 a0002c0003t0003g0125 a0002c0007t0002g0107 a0002c0007t0002g0108 a0005c0008t0009g0110	16	214	0.0748	-22	c.161 others(41): Show c.161+11209_161+11230delATATATATATATATATATATAT	ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	2/20			chr2	TogoVar
ZSCAN18_chr19_58078856_58103231	58089302	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02451.hp1 HG02572.hp1 others(2): Show HG01891.hp1 HG02451.hp1 HG02572.hp1 HG02615.hp1 HG02622.hp2	a0001 a0010 a0001 a0010	a0001c0001 a0010c0019 a0001c0001 a0010c0019	a0001c0001t0001 a0010c0019t0001 a0001c0001t0001 a0010c0019t0001	a0001c0001t0001g0027 a0001c0001t0001g0333 a0010c0019t0001g0101 a0001c0001t0001g0027 a0001c0001t0001g0333 a0010c0019t0001g0101	5	462	0.0108	-22	c.404 others(37): Show c.404-487_404-466delTTTTTTTTTTTTTTTTTTTTTT	ZSCAN18	ENSG00000121413.13	transcript	ENST00000601144.6	protein_coding	2/6			chr19	TogoVar
ZSWIM4_chr19_13790443_13837254	13800244	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02897.hp1 HG02896.hp1 HG02897.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0007 a0001c0009t0007	a0001c0009t0007g0338 a0001c0009t0007g0339 a0001c0009t0007g0338 a0001c0009t0007g0339	2	356	0.0056	-22	c.355 others(37): Show c.355+341_355+362delTTTTTTTTTTTTTTTTTTTTTT	ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr19	TogoVar
ZSWIM6_chr5_61327258_61551172	61355431	AACACACA others(15): Show AACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01070.hp1 HG01192.hp1 others(11): Show HG00280.hp1 HG01070.hp1 HG01192.hp1 HG01496.hp1 HG01993.hp2 HG02486.hp1 HG03490.hp1 HG03516.hp1 HG03540.hp1 HG03704.hp1 HG04184.hp1 HG04199.hp1 HG04228.hp2 NA20129.hp2	a0001 a0004 a0010 a0001 a0004 a0010	a0001c0001 a0001c0003 a0004c0006 others(1): Show a0001c0001 a0001c0003 a0004c0006 a0010c0011	a0001c0001t0001 a0001c0003t0001 a0004c0006t0001 others(1): Show a0001c0001t0001 a0001c0003t0001 a0004c0006t0001 a0010c0011t0001	a0001c0001t0001g0072 a0001c0001t0001g0077 a0001c0003t0001g0207 others(11): Show a0001c0001t0001g0072 a0001c0001t0001g0077 a0001c0003t0001g0207 a0001c0003t0001g0221 a0004c0006t0001g0010 a0004c0006t0001g0011 a0004c0006t0001g0058 a0004c0006t0001g0060 a0004c0006t0001g0061 a0004c0006t0001g0063 a0004c0006t0001g0066 a0004c0006t0001g0067 a0004c0006t0001g0068 a0010c0011t0001g0009	14	276	0.0507	-22	c.676 others(41): Show c.676+22528_676+22549delACACACACACACACACACACAC	ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr5	TogoVar
ZSWIM7_chr17_15971560_16004704	15976090	AAAAAAAA others(15): Show AAAAAAAAAATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0191 a0001c0001t0004g0191	1	344	0.0029	-22	c.19 others(33): Show c.1935_*1956delATATATATATATATTTTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		469		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976092	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0035 a0001c0001t0003g0035	1	344	0.0029	-22	c.19 others(33): Show c.1933_*1954delATATATATATATATATTTTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		467		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976094	AAAAAATA others(15): Show AAAAAATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0035 a0001c0001t0003g0035	1	344	0.0029	-22	c.19 others(33): Show c.1931_*1952delATATATATATATATATATTTTT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		465		chr17	TogoVar
ZSWIM7_chr17_15971560_16004704	15976120	TATATATA others(15): Show TATATATATATATATATATATAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0047 a0001c0001t0007g0047	1	344	0.0029	-22	c.19 others(33): Show c.1905_*1926delTTATATATATATATATATATAT	ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding		439		chr17	TogoVar
ZWILCH_chr15_66500326_66555130	66509822	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00544.hp2 others(56): Show HG00099.hp2 HG00140.hp1 HG00544.hp2 HG00558.hp1 HG00621.hp2 HG00673.hp2 HG00733.hp2 HG01243.hp1 HG01255.hp2 HG01884.hp1 HG02056.hp2 HG02071.hp2 HG02109.hp1 HG02165.hp1 HG02273.hp2 HG02293.hp2 HG02622.hp2 HG02630.hp2 HG02683.hp2 HG02698.hp2 HG02922.hp1 HG03239.hp1 HG03540.hp1 HG03834.hp2 HG03942.hp2 NA18943.hp1 NA18946.hp1 NA18949.hp1 NA18953.hp2 NA18954.hp1 NA18955.hp1 NA18959.hp1 NA18965.hp2 NA18968.hp2 NA18973.hp2 NA18977.hp1 NA18979.hp2 NA18986.hp2 NA18991.hp2 NA18993.hp1 NA18994.hp1 NA18995.hp2 NA18998.hp2 NA19000.hp2 NA19009.hp1 NA19010.hp1 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19056.hp1 NA19057.hp1 NA19065.hp1 NA19072.hp1 NA19077.hp1 NA19079.hp1 NA19083.hp1 NA19086.hp1 NA19090.hp1 NA19091.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0008 a0003c0003 a0001c0001 a0001c0008 a0003c0003	a0001c0001t0001 a0001c0001t0007 a0001c0008t0001 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0008t0001 a0003c0003t0001	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(53): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0337 a0001c0001t0007g0062 a0001c0008t0001g0080 a0003c0003t0001g0042	59	410	0.1439	-22	c.105 others(37): Show c.105+957_105+978delATATATATATATATATATATAT	ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
ZWINT_chr10_56352227_56366259	56352421	CGCCACCA others(15): Show CGCCACCATCTTGGGAGCGGCCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19240.hp2 NA20300.hp1 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0001 a0001c0009t0001	a0001c0009t0001g0017 a0001c0009t0001g0017	2	440	0.0046	-22	c.57 others(33): Show c.5784_*5805delAGGCCGCTCCCAAGATGGTGGC	ZWINT	ENSG00000122952.17	transcript	ENST00000373944.8	protein_coding		4805		chr10	TogoVar
ZWINT_chr10_56352227_56366259	56365723	TATATACA others(15): Show TATATACACACACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0005 a0003c0003t0001g0005	1	440	0.0023	-22	c.-45 others(33): Show c.-4509_-4488delGTGTGTGTGTGTGTGTGTATAT	ZWINT	ENSG00000122952.17	transcript	ENST00000373944.8	protein_coding		4465		chr10	TogoVar
ZYG11A_chr1_52837760_52899998	52842419	ATGTGTGT others(15): Show ATGTGTGTGTGTGTGTGTGTGTG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0004 a0001c0016t0004	a0001c0016t0004g0137 a0001c0016t0004g0137	1	290	0.0035	-22	c.-46 others(31): Show c.-464_-443delTGTGTGTGTGTGTGTGTGTGTG	ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding		340		chr1	TogoVar
ZYG11A_chr1_52837760_52899998	52846308	TTTTATAT others(15): Show TTTTATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02055.hp1 HG02109.hp2 others(10): Show HG01884.hp2 HG02055.hp1 HG02109.hp2 HG02572.hp2 HG02622.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp2 HG03831.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0019 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0019 a0001c0001t0020	a0001c0001t0001g0261 a0001c0001t0001g0283 a0001c0001t0004g0023 others(10): Show a0001c0001t0001g0261 a0001c0001t0001g0283 a0001c0001t0004g0023 a0001c0001t0004g0024 a0001c0001t0004g0025 a0001c0001t0004g0026 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0029 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0019g0033 a0001c0001t0020g0032	13	290	0.0448	-22	c.90+ others(37): Show c.90+3337_90+3358delTTATATATATATATATATATAT	ZYG11A	ENSG00000203995.11	transcript	ENST00000371528.2	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52797104	GTATATAT others(15): Show GTATATATTTATATATTATATAT	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02895.hp2 HG03139.hp2 others(1): Show HG02257.hp1 HG02895.hp2 HG03139.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0075 a0001c0001t0076 a0001c0001t0034 a0001c0001t0075 a0001c0001t0076	a0001c0001t0034g0179 a0001c0001t0034g0182 a0001c0001t0075g0158 others(1): Show a0001c0001t0034g0179 a0001c0001t0034g0182 a0001c0001t0075g0158 a0001c0001t0076g0157	4	352	0.0114	-22	c.148 others(39): Show c.1485+372_1485+393delTTATATATTATATATTATATAT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817799	ATATATAT others(15): Show ATATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0235 a0001c0002t0003g0235	1	352	0.0028	-22	c.204 others(41): Show c.2044+1172_2044+1193delATATATATATATATATTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817809	ATATATAT others(15): Show ATATATATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0077 a0001c0001t0077	a0001c0001t0077g0340 a0001c0001t0077g0340	1	352	0.0028	-22	c.204 others(41): Show c.2044+1182_2044+1203delATATATTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817811	ATATATTT others(15): Show ATATATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0076 a0001c0001t0032g0076	1	352	0.0028	-22	c.204 others(41): Show c.2044+1184_2044+1205delATATTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(15): Show ATATTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01106.hp1 NA18971.hp2 others(2): Show HG00597.hp2 HG01106.hp1 NA18971.hp2 NA18986.hp2 NA19012.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 others(2): Show a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0132 a0001c0001t0001g0348	5	352	0.0142	-22	c.204 others(41): Show c.2044+1186_2044+1207delATTTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(15): Show ATTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00738.hp1 others(7): Show HG00140.hp1 HG00323.hp2 HG00738.hp1 HG01515.hp1 HG01516.hp1 HG02109.hp1 HG03831.hp1 NA18988.hp1 NA19009.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0027 a0001c0001t0001 a0001c0001t0010 a0001c0001t0027	a0001c0001t0001g0090 a0001c0001t0001g0111 a0001c0001t0001g0113 others(7): Show a0001c0001t0001g0090 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0118 a0001c0001t0001g0124 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0010g0265 a0001c0001t0027g0137 a0001c0001t0027g0140	10	352	0.0284	-22	c.204 others(41): Show c.2044+1205_2044+1226delTTTTTTTTTTTTTTTTTTTTTT	ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr1	TogoVar
ZZEF1_chr17_3999445_4148030	4036801	ACACACAC others(15): Show ACACACACACACACACACTCTCT	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0005 a0005	a0005c0061 a0005c0061	a0005c0061t0005 a0005c0061t0005	a0005c0061t0005g0239 a0005c0061t0005g0239	1	296	0.0034	-22	c.630 others(41): Show c.6307-2531_6307-2510delAGAGAGTGTGTGTGTGTGTGTG	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54			chr17	TogoVar
ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0090	1	296	0.0034	-22	c.106 others(39): Show c.1066+554_1066+575delATATATATATATATATATATAT	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54			chr17	TogoVar
ZZEF1_chr17_3999445_4148030	4123268	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02258.hp2 HG02630.hp2 others(3): Show HG01109.hp1 HG02258.hp2 HG02630.hp2 HG03041.hp2 HG03195.hp2 HG03209.hp1	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0003 a0004c0011t0003	a0004c0011t0003g0251 a0004c0011t0003g0252 a0004c0011t0003g0253 others(3): Show a0004c0011t0003g0251 a0004c0011t0003g0252 a0004c0011t0003g0253 a0004c0011t0003g0254 a0004c0011t0003g0255 a0004c0011t0003g0256	6	296	0.0203	-22	c.499 others(37): Show c.499+617_499+638delATATATATATATATATATATAT	ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	2/54			chr17	TogoVar

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