Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNRIP1_chr2_68288010_68324949	68305274	ATGTGTGT others(15): Show ATGTGTGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	236	0.0042	-22	c.331 others(41): Show c.331-11270_331-11249delCACACACACACACACACACACA	CNRIP1	ENSG00000119865.9	transcript	ENST00000263655.4	protein_coding	2/2			chr2	TogoVar
CNST_chr1_246561456_246673595	246613577	AGGGTACT others(15): Show AGGGTACTTGTACTCTGAATAGT	A A	intron_variant intron_variant	MODIFIER	NA19079.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	318	0.0031	-22	c.380 others(39): Show c.380-7851_380-7830delGGGTACTTGTACTCTGAATAGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	2/10			chr1	TogoVar
CNST_chr1_246561456_246673595	246658721	ACTGATGC others(15): Show ACTGATGCCAGCAAGTCACTGGC	A A	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00738.hp2 HG01069.hp2 others(52): Show HG00423.hp2 HG00738.hp2 HG01069.hp2 HG01071.hp1 HG01169.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp2 HG01258.hp1 HG01515.hp2 HG01516.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02135.hp1 HG02148.hp1 HG02293.hp2 HG02300.hp2 HG02698.hp2 HG03017.hp1 HG03017.hp2 HG03195.hp2 HG03704.hp1 HG03704.hp2 HG03942.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp2 NA18747.hp1 NA18942.hp1 NA18943.hp1 NA18960.hp2 NA18962.hp2 NA18964.hp1 NA18969.hp2 NA18971.hp2 NA18983.hp2 NA18985.hp2 NA18999.hp2 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19070.hp1 NA19079.hp1 NA19086.hp1 NA19090.hp1 NA20805.hp2 NA20905.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0007 a0001c0001 a0002c0002 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0012 a0001c0001t0014 a0001c0001t0017 a0002c0002t0001 a0006c0007t0003	a0001c0001t0001g0168 a0001c0001t0001g0302 a0001c0001t0002g0181 others(51): Show a0001c0001t0001g0168 a0001c0001t0001g0302 a0001c0001t0002g0181 a0001c0001t0003g0005 a0001c0001t0003g0048 a0001c0001t0003g0049 a0001c0001t0003g0050 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0057 a0001c0001t0003g0064 a0001c0001t0003g0067 a0001c0001t0003g0068 a0001c0001t0003g0069 a0001c0001t0003g0071 a0001c0001t0003g0072 a0001c0001t0003g0073 a0001c0001t0003g0075 a0001c0001t0003g0076 a0001c0001t0003g0077 a0001c0001t0003g0081 a0001c0001t0003g0083 a0001c0001t0003g0084 a0001c0001t0003g0086 a0001c0001t0003g0094 a0001c0001t0003g0098 a0001c0001t0003g0104 a0001c0001t0003g0109 a0001c0001t0003g0135 a0001c0001t0003g0142 a0001c0001t0003g0161 a0001c0001t0003g0197 a0001c0001t0003g0204 a0001c0001t0003g0209 a0001c0001t0003g0218 a0001c0001t0003g0221 a0001c0001t0003g0245 a0001c0001t0003g0246 a0001c0001t0003g0248 a0001c0001t0003g0257 a0001c0001t0003g0266 a0001c0001t0003g0271 a0001c0001t0003g0280 a0001c0001t0003g0295 a0001c0001t0003g0314 a0001c0001t0003g0315 a0001c0001t0007g0065 a0001c0001t0012g0001 a0001c0001t0014g0162 a0001c0001t0014g0163 a0001c0001t0017g0010 a0002c0002t0001g0137 a0002c0002t0001g0138 a0006c0007t0003g0265	55	318	0.1730	-22	c.183 others(41): Show c.1837-1457_1837-1436delGCCTGATGCCAGCAAGTCACTG	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTFR_chr9_34546433_34594724	34563301	GTGCTGGG others(15): Show GTGCTGGGGAATCAAAGAGCCTC	G G	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0119 a0001c0001t0002g0119	1	400	0.0025	-22	c.319 others(39): Show c.319+1276_319+1297delGAGGCTCTTTGATTCCCCAGCA	CNTFR	ENSG00000122756.15	transcript	ENST00000378980.8	protein_coding	4/9			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17295989	AGAGAGAG others(15): Show AGAGAGAGAGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01192.hp1 HG02257.hp1 others(1): Show HG01074.hp1 HG01192.hp1 HG02257.hp1 HG03453.hp2	a0010 a0010	a0010c0012 a0010c0012	a0010c0012t0002 a0010c0012t0003 a0010c0012t0002 a0010c0012t0003	a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 others(1): Show a0010c0012t0002g0018 a0010c0012t0002g0019 a0010c0012t0002g0020 a0010c0012t0003g0025	4	211	0.0190	-22	c.984 others(39): Show c.984-2199_984-2178delAGAGAGAGTGTGTGTGTGTGTG	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	6/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17317542	TCAGAGGG others(15): Show TCAGAGGGTTACCATCTGATAAG	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00738.hp2 HG01070.hp1 others(17): Show HG00408.hp1 HG00738.hp2 HG01070.hp1 HG01074.hp2 HG01168.hp1 HG01934.hp1 HG01975.hp2 HG01978.hp2 HG02148.hp2 HG02293.hp2 HG03239.hp1 HG03492.hp2 HG03704.hp1 HG04204.hp2 HG06807.hp1 NA18949.hp2 NA19011.hp1 NA19066.hp1 NA19084.hp2 NA20300.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0014 a0002c0006 a0002c0008 others(2): Show a0001c0014 a0002c0006 a0002c0008 a0002c0013 a0012c0018	a0001c0014t0001 a0002c0006t0001 a0002c0006t0002 others(5): Show a0001c0014t0001 a0002c0006t0001 a0002c0006t0002 a0002c0006t0003 a0002c0008t0001 a0002c0008t0009 a0002c0013t0001 a0012c0018t0001	a0001c0014t0001g0038 a0002c0006t0001g0029 a0002c0006t0001g0030 others(17): Show a0001c0014t0001g0038 a0002c0006t0001g0029 a0002c0006t0001g0030 a0002c0006t0001g0031 a0002c0006t0001g0033 a0002c0006t0001g0041 a0002c0006t0001g0044 a0002c0006t0001g0076 a0002c0006t0002g0032 a0002c0006t0003g0036 a0002c0008t0001g0026 a0002c0008t0001g0027 a0002c0008t0001g0035 a0002c0008t0001g0037 a0002c0008t0001g0039 a0002c0008t0001g0040 a0002c0008t0009g0034 a0002c0013t0001g0045 a0012c0018t0001g0042 a0012c0018t0001g0043	20	216	0.0926	-22	c.134 others(41): Show c.1341+8293_1341+8314delGAGGGTTACCATCTGATAAGCA	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	8/25		INFO_REALIGN_3_PRIME	chr9	TogoVar
CNTLN_chr9_17130040_17508923	17475091	GCCCTCTT others(15): Show GCCCTCTTCTCTCTCAAGGTCTT	G G	intron_variant intron_variant	MODIFIER	NA19065.hp1 NA19065.hp1	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0177 a0001c0016t0001g0177	1	216	0.0046	-22	c.385 others(41): Show c.3855+8201_3855+8222delCCCTCTTCTCTCTCAAGGTCTT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	23/25			chr9	TogoVar
CNTLN_chr9_17130040_17508923	17486284	CCATACAG others(15): Show CCATACAGTAAATTTCAACAAAT	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00544.hp1 HG00597.hp1 others(65): Show HG00408.hp1 HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00609.hp2 HG00639.hp2 HG00673.hp2 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp2 HG01168.hp1 HG01168.hp2 HG01255.hp1 HG01975.hp1 HG02056.hp1 HG02132.hp1 HG02148.hp2 HG02258.hp2 HG02486.hp1 HG02559.hp1 HG02602.hp1 HG02602.hp2 HG02735.hp1 HG02735.hp2 HG02809.hp2 HG02895.hp2 HG03239.hp1 HG03239.hp2 HG03492.hp2 HG03704.hp1 HG03834.hp1 HG04204.hp1 HG04204.hp2 HG04228.hp1 NA18612.hp2 NA18940.hp1 NA18943.hp2 NA18947.hp1 NA18947.hp2 NA18951.hp2 NA18954.hp2 NA18955.hp1 NA18978.hp1 NA18978.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18989.hp1 NA18989.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19011.hp2 NA19064.hp2 NA19065.hp2 NA19066.hp1 NA19068.hp1 NA19084.hp1 NA19084.hp2 NA19086.hp1 NA19087.hp1 NA19087.hp2 NA20129.hp2 NA20300.hp2	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0012 a0015 a0016 a0023	a0001c0001 a0001c0004 a0001c0014 others(17): Show a0001c0001 a0001c0004 a0001c0014 a0001c0016 a0001c0023 a0001c0026 a0002c0006 a0002c0008 a0002c0013 a0003c0002 a0003c0052 a0004c0003 a0005c0005 a0005c0037 a0006c0007 a0008c0053 a0012c0018 a0015c0035 a0016c0038 a0023c0025	a0001c0001t0001 a0001c0004t0001 a0001c0014t0001 others(23): Show a0001c0001t0001 a0001c0004t0001 a0001c0014t0001 a0001c0016t0001 a0001c0023t0003 a0001c0026t0001 a0002c0006t0001 a0002c0006t0003 a0002c0008t0001 a0002c0008t0009 a0002c0013t0001 a0003c0002t0001 a0003c0002t0002 a0003c0002t0016 a0003c0052t0002 a0004c0003t0001 a0004c0003t0002 a0004c0003t0003 a0005c0005t0001 a0005c0037t0001 a0006c0007t0002 a0008c0053t0002 a0012c0018t0001 a0015c0035t0001 a0016c0038t0001 a0023c0025t0001	a0001c0001t0001g0082 a0001c0001t0001g0124 a0001c0001t0001g0126 others(65): Show a0001c0001t0001g0082 a0001c0001t0001g0124 a0001c0001t0001g0126 a0001c0001t0001g0162 a0001c0001t0001g0173 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0189 a0001c0001t0001g0191 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0198 a0001c0001t0001g0200 a0001c0004t0001g0005 a0001c0004t0001g0006 a0001c0004t0001g0008 a0001c0004t0001g0012 a0001c0004t0001g0013 a0001c0004t0001g0014 a0001c0004t0001g0015 a0001c0004t0001g0022 a0001c0014t0001g0038 a0001c0016t0001g0128 a0001c0023t0003g0166 a0001c0026t0001g0143 a0002c0006t0001g0041 a0002c0006t0001g0044 a0002c0006t0001g0076 a0002c0006t0003g0036 a0002c0008t0001g0026 a0002c0008t0001g0027 a0002c0008t0001g0037 a0002c0008t0009g0034 a0002c0013t0001g0045 a0003c0002t0001g0052 a0003c0002t0001g0054 a0003c0002t0001g0055 a0003c0002t0001g0058 a0003c0002t0001g0059 a0003c0002t0001g0073 a0003c0002t0001g0125 a0003c0002t0002g0065 a0003c0002t0016g0070 a0003c0052t0002g0167 a0004c0003t0001g0135 a0004c0003t0001g0138 a0004c0003t0001g0139 a0004c0003t0001g0146 a0004c0003t0001g0149 a0004c0003t0002g0187 a0004c0003t0003g0136 a0005c0005t0001g0090 a0005c0005t0001g0092 a0005c0005t0001g0093 a0005c0005t0001g0094 a0005c0005t0001g0095 a0005c0005t0001g0096 a0005c0037t0001g0102 a0006c0007t0002g0079 a0008c0053t0002g0004 a0012c0018t0001g0042 a0012c0018t0001g0043 a0015c0035t0001g0104 a0016c0038t0001g0151 a0023c0025t0001g0218	68	216	0.3148	-22	c.404 others(39): Show c.4042-704_4042-683delCATACAGTAAATTTCAACAAAT	CNTLN	ENSG00000044459.15	transcript	ENST00000380647.8	protein_coding	24/25			chr9	TogoVar
CNTN1_chr12_40687439_41077415	40795299	ACACACAC others(15): Show ACACACACACACACACACACATT	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0227 a0001c0003t0011g0227	1	159	0.0063	-22	c.-77 others(43): Show c.-77+102708_-77+102729delCACACACACACACACACACATT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23			chr12	TogoVar
CNTN1_chr12_40687439_41077415	40832436	ACAGTATT others(15): Show ACAGTATTCAGTACGGTAACATG	A A	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18950.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0101 a0001c0002t0001g0101	1	230	0.0043	-22	c.-76 others(41): Show c.-76-75919_-76-75898delAGTATTCAGTACGGTAACATGC	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40872208	TTGTTTGT others(15): Show TTGTTTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02109.hp1 HG02717.hp2 HG01167.hp1 HG02109.hp1 HG02717.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0063 a0001c0001t0001g0214 a0001c0001t0001g0230 a0001c0001t0001g0063 a0001c0001t0001g0214 a0001c0001t0001g0230	3	170	0.0176	-22	c.-76 others(41): Show c.-76-36145_-76-36124delTTGTGTGTGTGTGTGTGTGTGT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40975178	TTATATAT others(15): Show TTATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03195.hp1 HG03579.hp1 HG03098.hp1 HG03195.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0007 a0001c0002t0003 a0001c0009t0004 a0001c0001t0007 a0001c0002t0003 a0001c0009t0004	a0001c0001t0007g0002 a0001c0002t0003g0060 a0001c0009t0004g0046 a0001c0001t0007g0002 a0001c0002t0003g0060 a0001c0009t0004g0046	3	10	0.3000	-22	c.180 others(41): Show c.1805-5707_1805-5686delATATATATATATATATATATAT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN3_chr3_74257568_74619659	74285790	GATATATA others(15): Show GATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02922.hp1 HG03041.hp1 others(5): Show HG02809.hp1 HG02922.hp1 HG03041.hp1 HG03098.hp2 HG03471.hp2 HG06807.hp2 NA19043.hp2 NA19240.hp1	a0001 a0003 a0009 a0001 a0003 a0009	a0001c0001 a0001c0008 a0003c0003 others(3): Show a0001c0001 a0001c0008 a0003c0003 a0003c0007 a0003c0026 a0009c0025	a0001c0001t0004 a0001c0008t0002 a0003c0003t0002 others(5): Show a0001c0001t0004 a0001c0008t0002 a0003c0003t0002 a0003c0003t0005 a0003c0003t0011 a0003c0007t0004 a0003c0026t0010 a0009c0025t0027	a0001c0001t0004g0087 a0001c0008t0002g0065 a0003c0003t0002g0049 others(5): Show a0001c0001t0004g0087 a0001c0008t0002g0065 a0003c0003t0002g0049 a0003c0003t0005g0161 a0003c0003t0011g0009 a0003c0007t0004g0131 a0003c0026t0010g0005 a0009c0025t0027g0125	8	51	0.1569	-22	c.251 others(39): Show c.2518-321_2518-300delATATATATATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	19/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74344397	GTTTTTTT others(15): Show GTTTTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0007 a0003c0003t0007	a0003c0003t0007g0017 a0003c0003t0007g0017	1	123	0.0081	-22	c.136 others(41): Show c.1365-7761_1365-7740delAAAAAAAAAAAAAAAAAAAAAA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	11/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74460772	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01071.hp1 HG01167.hp1 others(26): Show HG00323.hp2 HG01071.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01255.hp2 HG01257.hp1 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG02015.hp2 HG02027.hp2 HG02293.hp1 HG02559.hp1 HG02735.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp1 HG03540.hp1 NA18955.hp1 NA18959.hp1 NA18977.hp1 NA18998.hp1 NA19043.hp1 NA19065.hp2 NA19077.hp2 NA19085.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0010 others(4): Show a0001c0001 a0001c0002 a0001c0010 a0002c0004 a0002c0005 a0003c0003 a0003c0026	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0002t0001 a0001c0002t0004 a0001c0002t0005 a0001c0002t0016 a0001c0002t0017 a0001c0002t0028 a0001c0010t0003 a0002c0004t0001 a0002c0004t0004 a0002c0004t0006 a0002c0005t0002 a0003c0003t0002 a0003c0003t0022 a0003c0026t0010	a0001c0001t0001g0100 a0001c0001t0001g0108 a0001c0001t0001g0134 others(26): Show a0001c0001t0001g0100 a0001c0001t0001g0108 a0001c0001t0001g0134 a0001c0001t0001g0139 a0001c0001t0002g0043 a0001c0001t0003g0022 a0001c0001t0004g0099 a0001c0002t0001g0098 a0001c0002t0001g0113 a0001c0002t0001g0116 a0001c0002t0001g0124 a0001c0002t0001g0128 a0001c0002t0004g0118 a0001c0002t0005g0147 a0001c0002t0005g0155 a0001c0002t0016g0170 a0001c0002t0017g0174 a0001c0002t0028g0172 a0001c0010t0003g0023 a0002c0004t0001g0086 a0002c0004t0004g0085 a0002c0004t0006g0151 a0002c0005t0002g0038 a0003c0003t0002g0031 a0003c0003t0002g0034 a0003c0003t0002g0035 a0003c0003t0002g0075 a0003c0003t0022g0072 a0003c0026t0010g0005	29	34	0.8529	-22	c.358 others(41): Show c.358+25662_358+25683delATATATATATATATATATATAT	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	4/22			chr3	TogoVar
CNTN3_chr3_74257568_74619659	74590481	CGCAGTGC others(15): Show CGCAGTGCTCAGAGCAACTCTGG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01071.hp1 HG01934.hp2 others(44): Show HG00408.hp2 HG01071.hp1 HG01934.hp2 HG01943.hp2 HG01952.hp1 HG01978.hp1 HG02015.hp1 HG02055.hp2 HG02083.hp1 HG02129.hp1 HG02145.hp1 HG02258.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp2 HG02615.hp2 HG02622.hp2 HG02647.hp2 HG02809.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03486.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03710.hp2 HG04184.hp1 NA18906.hp1 NA18906.hp2 NA18945.hp2 NA18956.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19065.hp1 NA19074.hp1 NA19240.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0001c0002 a0001c0006 others(10): Show a0001c0001 a0001c0002 a0001c0006 a0001c0008 a0001c0009 a0002c0004 a0002c0005 a0002c0015 a0003c0003 a0003c0007 a0003c0021 a0004c0011 a0006c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(29): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0013 a0001c0001t0014 a0001c0001t0020 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0007 a0001c0002t0011 a0001c0002t0013 a0001c0006t0006 a0001c0008t0002 a0001c0008t0014 a0001c0009t0002 a0001c0009t0004 a0002c0004t0006 a0002c0005t0002 a0002c0005t0021 a0002c0015t0012 a0003c0003t0002 a0003c0003t0007 a0003c0003t0011 a0003c0003t0022 a0003c0007t0002 a0003c0021t0003 a0004c0011t0002 a0006c0012t0003	a0001c0001t0001g0100 a0001c0001t0002g0033 a0001c0001t0002g0066 others(44): Show a0001c0001t0001g0100 a0001c0001t0002g0033 a0001c0001t0002g0066 a0001c0001t0002g0069 a0001c0001t0003g0014 a0001c0001t0003g0037 a0001c0001t0003g0040 a0001c0001t0004g0099 a0001c0001t0004g0103 a0001c0001t0005g0169 a0001c0001t0006g0144 a0001c0001t0013g0048 a0001c0001t0014g0011 a0001c0001t0020g0010 a0001c0002t0001g0098 a0001c0002t0002g0018 a0001c0002t0002g0020 a0001c0002t0002g0067 a0001c0002t0004g0101 a0001c0002t0007g0015 a0001c0002t0011g0008 a0001c0002t0013g0073 a0001c0006t0006g0168 a0001c0008t0002g0065 a0001c0008t0014g0028 a0001c0009t0002g0029 a0001c0009t0004g0104 a0002c0004t0006g0143 a0002c0005t0002g0036 a0002c0005t0002g0038 a0002c0005t0002g0041 a0002c0005t0021g0030 a0002c0015t0012g0016 a0003c0003t0002g0031 a0003c0003t0002g0034 a0003c0003t0002g0035 a0003c0003t0002g0049 a0003c0003t0007g0017 a0003c0003t0007g0032 a0003c0003t0007g0071 a0003c0003t0011g0009 a0003c0003t0022g0072 a0003c0007t0002g0039 a0003c0021t0003g0045 a0004c0011t0002g0042 a0004c0011t0002g0068 a0006c0012t0003g0047	47	172	0.2733	-22	c.-81 others(41): Show c.-81+23888_-81+23909delCCAGAGTTGCTCTGAGCACTGC	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	1/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2708727	TCACACAC others(15): Show TCACACACACACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00438.hp1 others(53): Show HG00140.hp1 HG00140.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp2 HG01169.hp1 HG01175.hp1 HG01243.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp2 HG01884.hp1 HG01978.hp1 HG02074.hp1 HG02074.hp2 HG02165.hp2 HG02257.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02602.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02886.hp2 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03516.hp1 HG03540.hp2 HG03654.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG06807.hp2 NA18906.hp2 NA18990.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0008 a0009	a0001c0001 a0001c0002 a0001c0003 others(13): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0020 a0001c0025 a0002c0014 a0003c0008 a0004c0011 a0008c0028 a0009c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(30): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0005 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0006t0002 a0001c0007t0004 a0001c0007t0016 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0020t0002 a0001c0025t0001 a0002c0014t0001 a0003c0008t0001 a0003c0008t0013 a0004c0011t0003 a0008c0028t0001 a0009c0012t0009	a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 others(53): Show a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0055 a0001c0001t0002g0070 a0001c0001t0003g0101 a0001c0001t0005g0019 a0001c0001t0005g0020 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0002t0001g0088 a0001c0002t0001g0108 a0001c0002t0002g0038 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0003g0114 a0001c0002t0004g0018 a0001c0002t0005g0003 a0001c0002t0007g0087 a0001c0003t0001g0014 a0001c0003t0001g0028 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0002g0107 a0001c0003t0011g0113 a0001c0004t0001g0097 a0001c0004t0002g0017 a0001c0004t0002g0064 a0001c0004t0002g0072 a0001c0004t0006g0044 a0001c0005t0001g0091 a0001c0005t0001g0096 a0001c0005t0001g0104 a0001c0005t0006g0010 a0001c0006t0002g0051 a0001c0006t0002g0060 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0011 a0001c0010t0003g0073 a0001c0020t0002g0082 a0001c0025t0001g0099 a0002c0014t0001g0016 a0003c0008t0001g0084 a0003c0008t0013g0109 a0004c0011t0003g0111 a0008c0028t0001g0023 a0009c0012t0009g0093	56	62	0.9032	-22	c.56- others(39): Show c.56-27468_56-27447delACACACACACACACACACACAC	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2747416	AAATAAAA others(15): Show AAATAAAAATAAAAATAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00438.hp1 others(75): Show HG00140.hp1 HG00140.hp2 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01169.hp1 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01884.hp1 HG01884.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02074.hp2 HG02132.hp1 HG02132.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02572.hp2 HG02602.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp1 HG02738.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02897.hp1 HG02965.hp1 HG02965.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03486.hp2 HG03654.hp1 HG03654.hp2 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG06807.hp1 NA18906.hp1 NA18906.hp2 NA18990.hp1 NA18990.hp2 NA19043.hp1 NA19043.hp2 NA20300.hp2	a0001 a0002 a0004 others(4): Show a0001 a0002 a0004 a0005 a0007 a0008 a0009	a0001c0001 a0001c0002 a0001c0003 others(20): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0013 a0001c0020 a0001c0021 a0001c0022 a0001c0024 a0001c0025 a0002c0015 a0002c0016 a0002c0017 a0004c0011 a0005c0026 a0007c0018 a0008c0028 a0009c0012	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(39): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0009 a0001c0006t0002 a0001c0006t0004 a0001c0007t0016 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0013t0007 a0001c0020t0002 a0001c0021t0002 a0001c0022t0003 a0001c0024t0015 a0001c0025t0001 a0002c0015t0003 a0002c0016t0003 a0002c0017t0008 a0004c0011t0003 a0005c0026t0017 a0007c0018t0003 a0008c0028t0001 a0009c0012t0009	a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 others(75): Show a0001c0001t0001g0012 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0100 a0001c0001t0002g0031 a0001c0001t0002g0032 a0001c0001t0002g0055 a0001c0001t0002g0070 a0001c0001t0002g0086 a0001c0001t0003g0008 a0001c0001t0003g0095 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0008g0053 a0001c0001t0009g0052 a0001c0002t0001g0029 a0001c0002t0001g0088 a0001c0002t0001g0108 a0001c0002t0002g0038 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0005g0002 a0001c0002t0005g0003 a0001c0002t0006g0075 a0001c0002t0007g0009 a0001c0002t0007g0080 a0001c0003t0001g0014 a0001c0003t0001g0028 a0001c0003t0001g0045 a0001c0003t0001g0071 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0002g0077 a0001c0003t0002g0107 a0001c0003t0003g0015 a0001c0003t0003g0047 a0001c0003t0003g0074 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0001g0021 a0001c0004t0001g0027 a0001c0004t0001g0097 a0001c0004t0001g0106 a0001c0004t0002g0048 a0001c0004t0002g0064 a0001c0004t0002g0072 a0001c0004t0006g0044 a0001c0004t0006g0068 a0001c0005t0001g0092 a0001c0005t0001g0096 a0001c0005t0006g0010 a0001c0005t0006g0035 a0001c0005t0009g0090 a0001c0006t0002g0060 a0001c0006t0004g0004 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0011 a0001c0010t0003g0073 a0001c0013t0007g0056 a0001c0020t0002g0082 a0001c0021t0002g0025 a0001c0022t0003g0083 a0001c0024t0015g0057 a0001c0025t0001g0099 a0002c0015t0003g0103 a0002c0016t0003g0079 a0002c0017t0008g0067 a0004c0011t0003g0065 a0004c0011t0003g0111 a0005c0026t0017g0046 a0007c0018t0003g0062 a0008c0028t0001g0023 a0009c0012t0009g0093	78	116	0.6724	-22	c.358 others(39): Show c.358+1722_358+1743delTAAAAATAAAAATAAAAAATAA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99889291	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0011 a0001c0001t0004g0011	1	7	0.1429	-22	c.578 others(41): Show c.578-26718_578-26697delGTGTGTGTGTGTGTGTGTGTGT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	6/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	99934927	TATATATA others(15): Show TATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0013 a0005c0004t0013	a0005c0004t0013g0050 a0005c0004t0013g0050	1	66	0.0152	-22	c.673 others(41): Show c.673+18780_673+18801delTATATATATATATATATATACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100204297	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0039 a0002c0002t0004g0039	1	9	0.1111	-22	c.188 others(43): Show c.1884+10660_1884+10681delTATATATATATATATATATATA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	15/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1158770	ATATATAT others(15): Show ATATATATGTGTGTATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02698.hp2 others(2): Show HG01167.hp2 HG01169.hp2 HG02698.hp2 HG04204.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0001c0019	a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 a0001c0019t0001	a0001c0001t0001g0104 a0001c0002t0001g0028 a0001c0006t0001g0200 others(2): Show a0001c0001t0001g0104 a0001c0002t0001g0028 a0001c0006t0001g0200 a0001c0006t0001g0201 a0001c0019t0001g0202	5	230	0.0217	-22	c.55+ others(39): Show c.55+10715_55+10736delGTGTGTATATATGTGTATATAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1300583	AAGAAAGA others(15): Show AAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01884.hp1 HG02109.hp2 others(9): Show HG00733.hp2 HG01884.hp1 HG02109.hp2 HG02280.hp1 HG02647.hp2 HG02976.hp2 HG03130.hp1 HG03195.hp2 HG03471.hp1 HG03471.hp2 NA18906.hp1 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 others(2): Show a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008	a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 others(2): Show a0001c0002t0001 a0001c0003t0001 a0001c0005t0001 a0001c0006t0001 a0001c0008t0001	a0001c0002t0001g0039 a0001c0003t0001g0091 a0001c0005t0001g0160 others(9): Show a0001c0002t0001g0039 a0001c0003t0001g0091 a0001c0005t0001g0160 a0001c0005t0001g0189 a0001c0005t0001g0208 a0001c0006t0001g0036 a0001c0006t0001g0216 a0001c0006t0001g0229 a0001c0008t0001g0118 a0001c0008t0001g0197 a0001c0008t0001g0211 a0001c0008t0001g0218	12	230	0.0522	-22	c.761 others(39): Show c.761+2596_761+2617delAAGAAAGAAAGAAAGAAAGAGA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1301710	TGAAGCAT others(15): Show TGAAGCATCTGCTCGGTCAAAGC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01952.hp2 HG02109.hp1 others(10): Show HG01884.hp2 HG01952.hp2 HG02109.hp1 HG02145.hp2 HG02486.hp2 HG02559.hp1 HG02615.hp1 HG02615.hp2 HG02922.hp2 HG02976.hp1 HG03139.hp1 HG03516.hp1 NA20129.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0002 a0001c0005 a0001c0006 others(4): Show a0001c0002 a0001c0005 a0001c0006 a0002c0011 a0002c0014 a0002c0017 a0005c0027	a0001c0002t0004 a0001c0005t0001 a0001c0006t0001 others(5): Show a0001c0002t0004 a0001c0005t0001 a0001c0006t0001 a0001c0006t0004 a0002c0011t0001 a0002c0014t0001 a0002c0017t0001 a0005c0027t0001	a0001c0002t0004g0228 a0001c0005t0001g0163 a0001c0005t0001g0182 others(10): Show a0001c0002t0004g0228 a0001c0005t0001g0163 a0001c0005t0001g0182 a0001c0005t0001g0188 a0001c0005t0001g0196 a0001c0005t0001g0230 a0001c0006t0001g0183 a0001c0006t0004g0111 a0002c0011t0001g0007 a0002c0014t0001g0220 a0002c0014t0001g0232 a0002c0017t0001g0179 a0005c0027t0001g0191	13	230	0.0565	-22	c.761 others(39): Show c.761+3721_761+3742delAAGCATCTGCTCGGTCAAAGCG	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146151676	ATATATGT others(15): Show ATATATGTATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03225.hp2 HG02630.hp1 HG03225.hp2	a0001 a0001	a0001c0012 a0001c0018 a0001c0012 a0001c0018	a0001c0012t0004 a0001c0018t0002 a0001c0012t0004 a0001c0018t0002	a0001c0012t0004g0026 a0001c0018t0002g0012 a0001c0012t0004g0026 a0001c0018t0002g0012	2	36	0.0556	-22	c.97+ others(39): Show c.97+34709_97+34730delGTATATATATATATATGTATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146457481	AATATATA others(15): Show AATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG02717.hp2 others(3): Show HG00735.hp2 HG02486.hp1 HG02717.hp2 HG02976.hp2 HG03098.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0005 others(2): Show a0001c0001 a0001c0003 a0001c0005 a0001c0019 a0002c0016	a0001c0001t0001 a0001c0001t0007 a0001c0003t0020 others(3): Show a0001c0001t0001 a0001c0001t0007 a0001c0003t0020 a0001c0005t0008 a0001c0019t0006 a0002c0016t0004	a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0003t0020g0017 others(3): Show a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0019t0006g0015 a0002c0016t0004g0024	6	7	0.8571	-22	c.98- others(41): Show c.98-316756_98-316735delTATATATATATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146483280	AAAATATA others(15): Show AAAATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0023 a0001c0003t0023	a0001c0003t0023g0030 a0001c0003t0023g0030	1	40	0.0250	-22	c.98- others(41): Show c.98-290989_98-290968delAATATATATATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146483308	TATATATA others(15): Show TATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02630.hp2 HG02976.hp1 others(1): Show HG02451.hp2 HG02630.hp2 HG02976.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 others(1): Show a0001c0001 a0001c0002 a0001c0008 a0001c0015	a0001c0001t0002 a0001c0002t0002 a0001c0008t0001 others(1): Show a0001c0001t0002 a0001c0002t0002 a0001c0008t0001 a0001c0015t0001	a0001c0001t0002g0006 a0001c0002t0002g0013 a0001c0008t0001g0025 others(1): Show a0001c0001t0002g0006 a0001c0002t0002g0013 a0001c0008t0001g0025 a0001c0015t0001g0011	4	39	0.1026	-22	c.98- others(41): Show c.98-290950_98-290929delATATATATACATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146622128	TGTATATA others(15): Show TGTATATATATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp2 HG03098.hp2 others(3): Show HG02451.hp2 HG02922.hp2 HG03098.hp2 HG03139.hp1 HG03540.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0008	a0001c0001t0002 a0001c0002t0001 a0001c0002t0010 others(3): Show a0001c0001t0002 a0001c0002t0001 a0001c0002t0010 a0001c0003t0004 a0001c0004t0005 a0001c0008t0001	a0001c0001t0002g0006 a0001c0002t0001g0021 a0001c0002t0010g0002 others(3): Show a0001c0001t0002g0006 a0001c0002t0001g0021 a0001c0002t0010g0002 a0001c0003t0004g0029 a0001c0004t0005g0004 a0001c0008t0001g0025	6	40	0.1500	-22	c.98- others(41): Show c.98-152129_98-152108delTACACACACGTATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146855807	GTATATAT others(15): Show GTATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG03540.hp2 HG02897.hp1 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0003t0004 a0001c0002t0001 a0001c0003t0004	a0001c0002t0001g0008 a0001c0003t0004g0029 a0001c0002t0001g0008 a0001c0003t0004g0029	2	4	0.5000	-22	c.402 others(41): Show c.402+15928_402+15949delTATATATATATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146875884	ACACACAC others(15): Show ACACACACACACATACACACACG	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02486.hp1 HG03098.hp1 HG00735.hp2 HG02486.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0019 a0001c0001 a0001c0019	a0001c0001t0001 a0001c0001t0007 a0001c0019t0006 a0001c0001t0001 a0001c0001t0007 a0001c0019t0006	a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0019t0006g0015 a0001c0001t0001g0003 a0001c0001t0007g0020 a0001c0019t0006g0015	3	40	0.0750	-22	c.402 others(41): Show c.402+35993_402+36014delTACACACACGCACACACACACA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147104873	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03540.hp2 HG02886.hp1 HG03540.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0013 a0001c0003t0004 a0001c0003t0013	a0001c0003t0004g0029 a0001c0003t0013g0010 a0001c0003t0004g0029 a0001c0003t0013g0010	2	9	0.2222	-22	c.551 others(39): Show c.551-3251_551-3230delATATATATATATATATATATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	4/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147176680	AATATATA others(15): Show AATATATAATAGAATTATATATT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG02486.hp1 others(9): Show HG00735.hp1 HG00735.hp2 HG02486.hp1 HG02922.hp2 HG03098.hp2 HG03225.hp2 HG03239.hp2 HG03540.hp1 NA18522.hp2 NA19030.hp1 NA19030.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(4): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0018 a0001c0019 a0002c0016	a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 others(8): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0018 a0001c0002t0001 a0001c0002t0002 a0001c0002t0010 a0001c0004t0005 a0001c0006t0014 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004	a0001c0001t0001g0038 a0001c0001t0007g0018 a0001c0001t0007g0020 others(9): Show a0001c0001t0001g0038 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0001t0018g0001 a0001c0002t0001g0021 a0001c0002t0002g0040 a0001c0002t0010g0002 a0001c0004t0005g0004 a0001c0006t0014g0033 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024	12	29	0.4138	-22	c.134 others(43): Show c.1348+44212_1348+44233delTATTATATATAATAGAATTATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148055729	ACATTGCA others(15): Show ACATTGCAGTTAAGAAGGAAAAG	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp2 HG02886.hp2 others(9): Show HG02451.hp1 HG02451.hp2 HG02886.hp2 HG02896.hp1 HG03139.hp2 HG03225.hp2 HG03239.hp1 NA18522.hp1 NA18522.hp2 NA20129.hp1 NA20129.hp2 NA21309.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0001c0002 a0001c0003 others(8): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0001c0011 a0001c0013 a0001c0018 a0004c0020 a0005c0007	a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 others(9): Show a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0003t0023 a0001c0005t0022 a0001c0006t0009 a0001c0010t0002 a0001c0011t0016 a0001c0013t0003 a0001c0018t0002 a0004c0020t0005 a0005c0007t0017	a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0002t0001g0007 others(9): Show a0001c0001t0002g0006 a0001c0001t0007g0018 a0001c0002t0001g0007 a0001c0003t0023g0030 a0001c0005t0022g0032 a0001c0006t0009g0028 a0001c0010t0002g0014 a0001c0011t0016g0019 a0001c0013t0003g0039 a0001c0018t0002g0012 a0004c0020t0005g0016 a0005c0007t0017g0031	12	40	0.3000	-22	c.238 others(43): Show c.2384-62357_2384-62336delTAAGAAGGAAAAGCATTGCAGT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	15/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148365722	GTGTATAT others(15): Show GTGTATATATGTATGTGTATACA	G G	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0029 a0001c0003t0004g0029	1	39	0.0256	-22	c.347 others(43): Show c.3476-17920_3476-17899delTATGTATGTGTATACATGTATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP4_chr16_76272401_76565757	76307503	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02109.hp2 NA18906.hp2 NA20752.hp1 HG02109.hp2 NA18906.hp2 NA20752.hp1	a0001 a0003 a0013 a0001 a0003 a0013	a0001c0001 a0003c0003 a0013c0033 a0001c0001 a0003c0003 a0013c0033	a0001c0001t0001 a0003c0003t0005 a0013c0033t0002 a0001c0001t0001 a0003c0003t0005 a0013c0033t0002	a0001c0001t0001g0140 a0003c0003t0005g0047 a0013c0033t0002g0050 a0001c0001t0001g0140 a0003c0003t0005g0047 a0013c0033t0002g0050	3	135	0.0222	-22	c.86- others(37): Show c.86-8894_86-8873delTATATATATATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76397938	TTATATAC others(15): Show TTATATACATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00423.hp1 HG00558.hp1 others(22): Show HG00099.hp1 HG00423.hp1 HG00558.hp1 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01257.hp2 HG01346.hp2 HG01358.hp2 HG02145.hp1 HG02258.hp1 HG02559.hp2 HG02965.hp1 HG02970.hp1 HG03017.hp1 NA18906.hp2 NA18968.hp2 NA18991.hp1 NA18991.hp2 NA19007.hp1 NA19007.hp2 NA19011.hp2 NA19083.hp1 NA20300.hp2 NA20905.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0005 a0022 a0024 a0026	a0001c0001 a0001c0004 a0002c0002 others(8): Show a0001c0001 a0001c0004 a0002c0002 a0002c0005 a0003c0003 a0003c0006 a0005c0008 a0005c0043 a0022c0025 a0024c0024 a0026c0034	a0001c0001t0001 a0001c0001t0020 a0001c0004t0003 others(13): Show a0001c0001t0001 a0001c0001t0020 a0001c0004t0003 a0002c0002t0002 a0002c0002t0004 a0002c0002t0005 a0002c0005t0004 a0003c0003t0005 a0003c0003t0006 a0003c0003t0011 a0003c0006t0001 a0005c0008t0001 a0005c0043t0001 a0022c0025t0002 a0024c0024t0001 a0026c0034t0006	a0001c0001t0001g0017 a0001c0001t0001g0040 a0001c0001t0001g0097 others(22): Show a0001c0001t0001g0017 a0001c0001t0001g0040 a0001c0001t0001g0097 a0001c0001t0020g0181 a0001c0004t0003g0094 a0001c0004t0003g0213 a0002c0002t0002g0039 a0002c0002t0002g0128 a0002c0002t0002g0145 a0002c0002t0002g0167 a0002c0002t0004g0226 a0002c0002t0005g0018 a0002c0005t0004g0072 a0002c0005t0004g0154 a0003c0003t0005g0047 a0003c0003t0006g0268 a0003c0003t0011g0243 a0003c0003t0011g0244 a0003c0003t0011g0246 a0003c0006t0001g0112 a0005c0008t0001g0091 a0005c0043t0001g0041 a0022c0025t0002g0110 a0024c0024t0001g0096 a0026c0034t0006g0209	25	97	0.2577	-22	c.391 others(41): Show c.391-29507_391-29486delCATATATATATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	3/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP5_chr2_124020287_124926219	124194390	TATATATA others(15): Show TATATATATATATATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG02293.hp2 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0014 a0001c0001t0020g0014	1	62	0.0161	-22	c.83- others(39): Show c.83-27309_83-27288delTATATATATATATATAAATATA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124565574	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02293.hp2 NA20300.hp2 HG02293.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0020 a0001c0001t0001 a0001c0001t0020	a0001c0001t0001g0011 a0001c0001t0020g0014 a0001c0001t0001g0011 a0001c0001t0020g0014	2	3	0.6667	-22	c.175 others(41): Show c.1756+2273_1756+2294delTTTTTTTTTTTTTTTTTTTTTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124619842	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02886.hp1 HG02886.hp2 others(6): Show HG02257.hp1 HG02886.hp1 HG02886.hp2 HG02897.hp2 HG03098.hp2 HG03453.hp1 HG03471.hp2 NA18906.hp1 NA19043.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0004c0007 a0001c0001 a0001c0002 a0004c0007	a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003 a0001c0002t0011 a0001c0002t0012 a0004c0007t0001	a0001c0001t0002g0024 a0001c0001t0003g0006 a0001c0002t0001g0007 others(6): Show a0001c0001t0002g0024 a0001c0001t0003g0006 a0001c0002t0001g0007 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0003g0004 a0001c0002t0011g0029 a0001c0002t0012g0018 a0004c0007t0001g0017	9	15	0.6000	-22	c.187 others(41): Show c.1876+9944_1876+9965delTATATATATATATATATATATA	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	12/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124702346	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA20300.hp1 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0002g0022 a0001c0002t0001g0064 a0001c0001t0002g0022 a0001c0002t0001g0064	2	4	0.5000	-22	c.207 others(43): Show c.2078-44854_2078-44833delTTTTTTTTTTTTTTTTTTTTTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124713221	TTCTTTCT others(15): Show TTCTTTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0005 a0005	a0005c0003 a0005c0003	a0005c0003t0008 a0005c0003t0008	a0005c0003t0008g0036 a0005c0003t0008g0036	1	50	0.0200	-22	c.207 others(43): Show c.2078-33984_2078-33963delCTTTCTTTCTTTCTTTCTTTCT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNTNAP5_chr2_124020287_124926219	124713296	TCTTTCTT others(15): Show TCTTTCTTCTTTCTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0058 a0001c0002t0008g0058	1	62	0.0161	-22	c.207 others(43): Show c.2078-33925_2078-33904delCTTTCTCTTTCTTTCCTTTCTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr2	TogoVar
COA1_chr7_43634257_43734523	43691455	AAGAAAGA others(15): Show AAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02145.hp2 HG02559.hp2 others(4): Show HG01891.hp1 HG02145.hp2 HG02559.hp2 HG02572.hp1 HG02922.hp1 HG03453.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0016 others(4): Show a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020	7	382	0.0183	-22	c.-39 others(41): Show c.-39+37952_-39+37973delCTTTCTTTCTTTCTTTCTTTCT	COA1	ENSG00000106603.20	transcript	ENST00000223336.11	protein_coding	1/5			chr7	TogoVar
COBL_chr7_51011212_51321809	51056812	AACACACA others(15): Show AACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0002 a0002	a0002c0015 a0002c0015	a0002c0015t0001 a0002c0015t0001	a0002c0015t0001g0180 a0002c0015t0001g0180	1	43	0.0233	-22	c.109 others(43): Show c.1097-13142_1097-13121delGTGTGTGTGTGTGTGTGTGTGT	COBL	ENSG00000106078.19	transcript	ENST00000265136.12	protein_coding	7/12			chr7	TogoVar
COBL_chr7_51011212_51321809	51156698	TCACACAC others(15): Show TCACACACACACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG01975.hp2	a0009 a0009	a0009c0017 a0009c0017	a0009c0017t0001 a0009c0017t0001	a0009c0017t0001g0186 a0009c0017t0001g0186	1	42	0.0238	-22	c.784 others(41): Show c.784-20389_784-20368delTGTGTGTGTGTGTGTGTGTGTG	COBL	ENSG00000106078.19	transcript	ENST00000265136.12	protein_coding	5/12			chr7	TogoVar
COCH_chr14_30869559_30895618	30893113	TGGCAAAA others(15): Show TGGCAAAAACCACAATTACAAAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0183 a0001c0001t0004g0183	1	476	0.0021	-22	c.33 others(33): Show c.3323_*3344delGGCAAAAACCACAATTACAAAC	COCH	ENSG00000100473.18	transcript	ENST00000396618.9	protein_coding		2496		chr14	TogoVar
COG1_chr17_73188055_73213507	73192848	CCGCCCCC others(15): Show CCGCCCCCTCGCGCCCGCCCCCT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0002 a0002c0001t0001g0002	1	426	0.0023	-22	c.-22 others(31): Show c.-221_-200delCGCCCCCTCGCGCCCGCCCCCT	COG1	ENSG00000166685.13	transcript	ENST00000299886.9	protein_coding		206		chr17	TogoVar
COG2_chr1_230637481_230698982	230667786	AGGGACAT others(15): Show AGGGACATTTTTCCTCCCTAACT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01169.hp2 HG00642.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0079 a0001c0001t0005g0078 a0001c0001t0001g0079 a0001c0001t0005g0078	2	404	0.0050	-22	c.486 others(37): Show c.486-887_486-866delGACATTTTTCCTCCCTAACTGG	COG2	ENSG00000135775.14	transcript	ENST00000366669.9	protein_coding	5/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
COG2_chr1_230637481_230698982	230689179	GTTTTTAT others(15): Show GTTTTTATTAAAAAAAATATAAA	G G	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0114 a0002c0002t0001g0114	1	404	0.0025	-22	c.179 others(39): Show c.1794+622_1794+643delTATTAAAAAAAATATAAATTTT	COG2	ENSG00000135775.14	transcript	ENST00000366669.9	protein_coding	15/17		INFO_REALIGN_3_PRIME	chr1	TogoVar

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