Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LARGE1_chr22_33267509_33925476	33574686	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0032 a0001c0003t0032	a0001c0003t0032g0107 a0001c0003t0032g0107	1	110	0.0091	-22	c.616 others(39): Show c.616-9689_616-9668delCACACACACACACACACACACA	LARGE1	ENSG00000133424.22	transcript	ENST00000397394.8	protein_coding	5/14			chr22	TogoVar
LARGE1_chr22_33267509_33925476	33766913	CATATATA others(15): Show CATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG02280.hp2 HG02896.hp1 others(2): Show HG01192.hp2 HG02280.hp2 HG02896.hp1 HG03491.hp1 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0009 a0001c0001 a0001c0002 a0001c0009	a0001c0001t0001 a0001c0001t0003 a0001c0001t0033 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0033 a0001c0002t0001 a0001c0009t0009	a0001c0001t0001g0031 a0001c0001t0003g0032 a0001c0001t0033g0110 others(2): Show a0001c0001t0001g0031 a0001c0001t0003g0032 a0001c0001t0033g0110 a0001c0002t0001g0021 a0001c0009t0009g0049	5	110	0.0455	-22	c.-82 others(39): Show c.-82-5377_-82-5356delATATATATATATATATATATAT	LARGE1	ENSG00000133424.22	transcript	ENST00000397394.8	protein_coding	1/14			chr22	TogoVar
LARGE1_chr22_33267509_33925476	33865832	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02809.hp2 HG02896.hp1 others(1): Show HG02559.hp1 HG02809.hp2 HG02896.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0006 a0001c0001t0033 a0001c0002t0006 others(1): Show a0001c0001t0006 a0001c0001t0033 a0001c0002t0006 a0001c0003t0011	a0001c0001t0006g0007 a0001c0001t0033g0110 a0001c0002t0006g0080 others(1): Show a0001c0001t0006g0007 a0001c0001t0033g0110 a0001c0002t0006g0080 a0001c0003t0011g0063	4	110	0.0364	-22	c.-83 others(41): Show c.-83+54141_-83+54162delAAAAAAAAAAAAAAAAAAAAAA	LARGE1	ENSG00000133424.22	transcript	ENST00000397394.8	protein_coding	1/14			chr22	TogoVar
LARGE2_chr11_45917656_45934096	45923985	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00323.hp1 others(76): Show HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00408.hp1 HG00621.hp1 HG00621.hp2 HG00738.hp1 HG01069.hp2 HG01074.hp2 HG01099.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01891.hp2 HG02015.hp2 HG02056.hp1 HG02080.hp1 HG02109.hp1 HG02129.hp2 HG02135.hp1 HG02145.hp2 HG02165.hp1 HG02293.hp1 HG02523.hp1 HG02683.hp2 HG02738.hp1 HG02895.hp2 HG02897.hp1 HG02965.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp1 HG03540.hp2 HG03710.hp1 HG03834.hp2 HG03927.hp2 HG04184.hp2 HG04228.hp1 NA18939.hp2 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18945.hp2 NA18951.hp1 NA18952.hp2 NA18953.hp2 NA18959.hp2 NA18960.hp1 NA18962.hp2 NA18963.hp2 NA18965.hp2 NA18974.hp1 NA18978.hp1 NA18980.hp2 NA18981.hp1 NA18983.hp2 NA18986.hp1 NA18987.hp2 NA18988.hp1 NA18992.hp1 NA18992.hp2 NA18998.hp1 NA19009.hp2 NA19058.hp1 NA19067.hp1 NA19068.hp2 NA19070.hp1 NA19082.hp2 NA19085.hp2 NA19087.hp2 NA19091.hp2 NA20129.hp1 NA20805.hp2 NA20905.hp1	a0001 a0006 a0010 a0001 a0006 a0010	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0006c0014 a0010c0012	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0003t0001 a0006c0014t0001 a0010c0012t0001	a0001c0001t0001g0002 a0001c0001t0001g0033 a0001c0001t0001g0043 others(12): Show a0001c0001t0001g0002 a0001c0001t0001g0033 a0001c0001t0001g0043 a0001c0001t0001g0071 a0001c0002t0001g0002 a0001c0002t0001g0012 a0001c0002t0001g0020 a0001c0002t0001g0037 a0001c0002t0001g0041 a0001c0002t0001g0042 a0001c0002t0001g0070 a0001c0002t0003g0002 a0001c0003t0001g0002 a0006c0014t0001g0043 a0010c0012t0001g0072	79	418	0.1890	-22	c.369 others(37): Show c.369-152_369-131delAAAAAAAAAAAAAAAAAAAAAA	LARGE2	ENSG00000165905.18	transcript	ENST00000401752.6	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LARP1B_chr4_128056312_128216988	128065293	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0249 a0001c0001t0001g0249	1	336	0.0030	-22	c.-78 others(39): Show c.-78+3894_-78+3915delTTCTTTCTTTCTTTCTTTCTTT	LARP1B	ENSG00000138709.20	transcript	ENST00000326639.11	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr4	TogoVar
LARP1B_chr4_128056312_128216988	128129164	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0002 a0002	a0002c0017 a0002c0017	a0002c0017t0002 a0002c0017t0002	a0002c0017t0002g0074 a0002c0017t0002g0074	1	336	0.0030	-22	c.152 others(41): Show c.1524+6995_1524+7016delAAAAAAAAAAAAAAAAAAAAAA	LARP1B	ENSG00000138709.20	transcript	ENST00000326639.11	protein_coding	11/19		INFO_REALIGN_3_PRIME	chr4	TogoVar
LARP4_chr12_50395885_50485004	50426684	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0228 a0001c0001t0001g0228	1	318	0.0031	-22	c.19- others(37): Show c.19-1052_19-1031delTGTGTGTGTGTGTGTGTGTGTG	LARP4	ENSG00000161813.23	transcript	ENST00000398473.7	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr12	TogoVar
LAS1L_chrX_65507582_65539787	65538481	CATATATA others(15): Show CATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	203	0.0049	-22	c.-37 others(33): Show c.-3788_-3767delATATATATATATATATATATAT	LAS1L	ENSG00000001497.18	transcript	ENST00000374811.8	protein_coding		3695		chrX	TogoVar
LAT2_chr7_74205006_74234834	74209820	GTCCTATC others(15): Show GTCCTATCTCTCTTTCTTCTCTT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18977.hp2 NA18999.hp1 NA18977.hp2 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	2	344	0.0058	-22	c.-48 others(31): Show c.-486_-465delTCCTATCTCTCTTTCTTCTCTT	LAT2	ENSG00000086730.17	transcript	ENST00000460943.6	protein_coding		185		chr7	TogoVar
LAT2_chr7_74205006_74234834	74214600	AAATATAT others(15): Show AAATATATATAAATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01106.hp1 HG02486.hp1 others(3): Show HG00642.hp1 HG01106.hp1 HG02486.hp1 HG03041.hp1 NA18612.hp1 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 others(3): Show a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0145 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0225	6	344	0.0174	-22	c.-21 others(39): Show c.-218-211_-218-190delAATATATATATGAATATATATA	LAT2	ENSG00000086730.17	transcript	ENST00000460943.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LATS1_chr6_149653153_149723101	149706183	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0046 a0001c0002t0002g0046	1	272	0.0037	-22	c.-14 others(41): Show c.-140-3939_-140-3918delTTTTTTTTTTTTTTTTTTTTTT	LATS1	ENSG00000131023.13	transcript	ENST00000543571.6	protein_coding	1/7			chr6	TogoVar
LATS2_chr13_20968036_21066586	20969691	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0179 a0003c0003t0002g0179	1	316	0.0032	-22	c.51 others(33): Show c.5157_*5178delATATATATATATATATTTTTTT	LATS2	ENSG00000150457.9	transcript	ENST00000382592.5	protein_coding		3344		chr13	TogoVar
LATS2_chr13_20968036_21066586	20969697	AATATATA others(15): Show AATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00639.hp1 HG01943.hp2 others(7): Show HG00099.hp1 HG00639.hp1 HG01943.hp2 HG02615.hp2 HG03453.hp1 NA18942.hp1 NA19001.hp1 NA19011.hp1 NA20129.hp1 NA20129.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0006	a0001c0001 a0002c0006 a0002c0024 others(4): Show a0001c0001 a0002c0006 a0002c0024 a0003c0003 a0003c0005 a0004c0004 a0006c0011	a0001c0001t0001 a0001c0001t0013 a0001c0001t0017 others(6): Show a0001c0001t0001 a0001c0001t0013 a0001c0001t0017 a0002c0006t0004 a0002c0024t0023 a0003c0003t0004 a0003c0005t0001 a0004c0004t0004 a0006c0011t0001	a0001c0001t0001g0249 a0001c0001t0013g0167 a0001c0001t0017g0130 others(7): Show a0001c0001t0001g0249 a0001c0001t0013g0167 a0001c0001t0017g0130 a0002c0006t0004g0015 a0002c0006t0004g0019 a0002c0024t0023g0038 a0003c0003t0004g0259 a0003c0005t0001g0084 a0004c0004t0004g0298 a0006c0011t0001g0082	10	316	0.0317	-22	c.51 others(33): Show c.5151_*5172delATATATATATATATATATATAT	LATS2	ENSG00000150457.9	transcript	ENST00000382592.5	protein_coding		3338		chr13	TogoVar
LAYN_chr11_111535720_111566745	111564617	AACACACA others(15): Show AACACACACACACACACACACAC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00408.hp1 others(146): Show HG00099.hp2 HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp2 HG00741.hp1 HG00741.hp2 HG01069.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01109.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG01175.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01261.hp1 HG01346.hp2 HG01361.hp2 HG01516.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02074.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02148.hp1 HG02148.hp2 HG02258.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp2 HG02523.hp2 HG02559.hp1 HG02615.hp1 HG02683.hp1 HG02735.hp1 HG02735.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03195.hp2 HG03225.hp2 HG03490.hp1 HG03490.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG04115.hp1 HG04199.hp2 HG04228.hp2 NA18942.hp1 NA18942.hp2 NA18944.hp1 NA18944.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp1 NA18952.hp1 NA18952.hp2 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18977.hp1 NA18977.hp2 NA18979.hp1 NA18982.hp1 NA18982.hp2 NA18988.hp2 NA18990.hp2 NA18992.hp1 NA18992.hp2 NA19001.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19058.hp1 NA19058.hp2 NA19059.hp2 NA19062.hp1 NA19062.hp2 NA19066.hp1 NA19066.hp2 NA19081.hp1 NA19081.hp2 NA19084.hp1 NA19084.hp2 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA20752.hp2 NA20905.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0001c0005 a0005c0006 a0001c0001 a0001c0005 a0005c0006	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 a0001c0005t0001 a0005c0006t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 others(78): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0076 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0125 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0157 a0001c0001t0005g0021 a0001c0001t0005g0039 a0001c0001t0005g0078 a0001c0001t0005g0133 a0001c0001t0005g0148 a0001c0001t0005g0149 a0001c0001t0006g0006 a0001c0001t0014g0047 a0001c0005t0001g0002 a0001c0005t0001g0055 a0001c0005t0001g0056 a0005c0006t0001g0016 a0005c0006t0001g0160	149	298	0.5000	-22	c.41 others(33): Show c.4160_*4181delACACACACACACACACACACAC	LAYN	ENSG00000204381.12	transcript	ENST00000375614.7	protein_coding		2873		chr11	TogoVar
LCLAT1_chr2_30442246_30649225	30534219	CTGTGTGT others(15): Show CTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	NA18963.hp1 NA19009.hp2 NA18963.hp1 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0011 a0001c0001t0003 a0001c0001t0011	a0001c0001t0003g0238 a0001c0001t0011g0324 a0001c0001t0003g0238 a0001c0001t0011g0324	2	366	0.0055	-22	c.364 others(37): Show c.364+939_364+960delGTGTGTGTGTGTGTGTGTGTGT	LCLAT1	ENSG00000172954.14	transcript	ENST00000379509.8	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
LCLAT1_chr2_30442246_30649225	30557283	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0070 a0004c0005t0070	a0004c0005t0070g0341 a0004c0005t0070g0341	1	366	0.0027	-22	c.365 others(39): Show c.365-4840_365-4819delGTGTGTGTGTGTGTGTGTGTGT	LCLAT1	ENSG00000172954.14	transcript	ENST00000379509.8	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
LCORL_chr4_17836187_18026755	17982099	CGTGTGTG others(15): Show CGTGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG03098.hp1 HG02895.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0120 a0001c0001t0006g0121 a0001c0001t0006g0120 a0001c0001t0006g0121	2	292	0.0069	-22	c.155 others(39): Show c.155-9236_155-9215delACACACACACACACACACACAC	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LCORL_chr4_17836187_18026755	17998975	AAAAAAAA others(15): Show AAAAAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0240 a0001c0003t0003g0240	1	292	0.0034	-22	c.154 others(41): Show c.154+22601_154+22622delATATATATATATTTTTTTTTTT	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LCOR_chr10_96827298_97000956	96916595	ATATATAT others(15): Show ATATATATATATCTATATATATG	A A	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0004 a0004	a0004c0009 a0004c0009	a0004c0009t0064 a0004c0009t0064	a0004c0009t0064g0166 a0004c0009t0064g0166	1	288	0.0035	-22	c.-18 others(41): Show c.-184+8849_-184+8870delTATATATATATCTATATATATG	LCOR	ENSG00000196233.14	transcript	ENST00000421806.4	protein_coding	4/7			chr10	TogoVar
LCP2_chr5_170241233_170302777	170289595	CTTTCTTT others(15): Show CTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0128 a0001c0005t0002g0128	1	384	0.0026	-22	c.142 others(39): Show c.142-1601_142-1580delAAGAAAGAAAGAAAGAAAGAAA	LCP2	ENSG00000043462.13	transcript	ENST00000046794.10	protein_coding	2/20			chr5	TogoVar
LCTL_chr15_66542532_66570998	66568859	CACACACA others(15): Show CACACACACACACACACATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0048	1	434	0.0023	-22	c.-30 others(33): Show c.-3047_-3026delATATATGTGTGTGTGTGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2862		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568867	CACACACA others(15): Show CACACACACATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG02559.hp2 HG01069.hp1 HG01071.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0051 a0001c0001t0001g0038 a0001c0001t0001g0051	3	434	0.0069	-22	c.-30 others(33): Show c.-3055_-3034delATATATATATATATGTGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2870		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568869	CACACACA others(15): Show CACACACATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0242 a0001c0001t0003g0242	1	434	0.0023	-22	c.-30 others(33): Show c.-3057_-3036delATATATATATATATATGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2872		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568871	CACACATA others(15): Show CACACATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG01978.hp1 HG02738.hp2 others(7): Show HG01109.hp1 HG01978.hp1 HG02738.hp2 HG02809.hp2 HG03209.hp1 HG03704.hp1 HG04199.hp2 NA18939.hp2 NA18979.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0006t0001 a0001c0001t0001 a0001c0006t0001	a0001c0001t0001g0002 a0001c0001t0001g0014 a0001c0001t0001g0037 others(6): Show a0001c0001t0001g0002 a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0126 a0001c0001t0001g0131 a0001c0001t0001g0154 a0001c0006t0001g0072	10	434	0.0230	-22	c.-30 others(33): Show c.-3059_-3038delATATATATATATATATATGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2874		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568873	CACATATA others(15): Show CACATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp1 NA19068.hp2 NA19085.hp2 HG03239.hp1 NA19068.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0002 a0001c0001t0001g0005	3	434	0.0069	-22	c.-30 others(33): Show c.-3061_-3040delATATATATATATATATATATGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2876		chr15	TogoVar
LCT_chr2_135782850_135842184	135785690	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00741.hp1 HG01256.hp1 others(71): Show HG00280.hp2 HG00741.hp1 HG01256.hp1 HG01261.hp1 HG01346.hp1 HG01358.hp1 HG01433.hp2 HG01928.hp2 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01981.hp2 HG01993.hp1 HG02056.hp2 HG02132.hp1 HG02165.hp2 HG02280.hp2 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02615.hp2 HG02698.hp2 HG02818.hp1 HG02970.hp2 HG03130.hp1 HG03139.hp2 HG03490.hp2 HG03688.hp2 HG03831.hp2 HG03942.hp2 HG04115.hp2 HG04184.hp2 HG04228.hp1 NA18747.hp2 NA18939.hp1 NA18941.hp1 NA18945.hp1 NA18954.hp1 NA18955.hp2 NA18963.hp2 NA18967.hp2 NA18969.hp2 NA18970.hp1 NA18972.hp1 NA18979.hp2 NA18982.hp1 NA18986.hp2 NA18992.hp2 NA18993.hp2 NA19002.hp2 NA19007.hp2 NA19010.hp2 NA19030.hp1 NA19043.hp2 NA19056.hp1 NA19058.hp2 NA19063.hp1 NA19064.hp1 NA19065.hp1 NA19070.hp1 NA19074.hp1 NA19077.hp1 NA19077.hp2 NA19078.hp2 NA19079.hp1 NA19082.hp1 NA19088.hp2 NA19091.hp1 NA20300.hp1 NA20905.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0013	a0001c0039 a0001c0042 a0002c0002 others(6): Show a0001c0039 a0001c0042 a0002c0002 a0002c0009 a0002c0040 a0002c0046 a0003c0003 a0003c0007 a0013c0032	a0001c0039t0001 a0001c0042t0001 a0002c0002t0001 others(8): Show a0001c0039t0001 a0001c0042t0001 a0002c0002t0001 a0002c0002t0005 a0002c0002t0007 a0002c0009t0001 a0002c0040t0001 a0002c0046t0001 a0003c0003t0001 a0003c0007t0001 a0013c0032t0001	a0001c0039t0001g0173 a0001c0042t0001g0043 a0002c0002t0001g0117 others(69): Show a0001c0039t0001g0173 a0001c0042t0001g0043 a0002c0002t0001g0117 a0002c0002t0001g0118 a0002c0002t0001g0119 a0002c0002t0001g0120 a0002c0002t0001g0121 a0002c0002t0001g0122 a0002c0002t0001g0123 a0002c0002t0001g0124 a0002c0002t0001g0125 a0002c0002t0001g0126 a0002c0002t0001g0128 a0002c0002t0001g0130 a0002c0002t0001g0131 a0002c0002t0001g0133 a0002c0002t0001g0142 a0002c0002t0001g0143 a0002c0002t0001g0144 a0002c0002t0001g0145 a0002c0002t0001g0146 a0002c0002t0001g0148 a0002c0002t0001g0149 a0002c0002t0001g0150 a0002c0002t0001g0153 a0002c0002t0001g0154 a0002c0002t0001g0155 a0002c0002t0001g0156 a0002c0002t0001g0157 a0002c0002t0001g0158 a0002c0002t0001g0159 a0002c0002t0001g0160 a0002c0002t0001g0162 a0002c0002t0001g0163 a0002c0002t0001g0164 a0002c0002t0001g0170 a0002c0002t0001g0171 a0002c0002t0001g0172 a0002c0002t0001g0174 a0002c0002t0001g0178 a0002c0002t0001g0182 a0002c0002t0001g0183 a0002c0002t0001g0186 a0002c0002t0001g0187 a0002c0002t0001g0189 a0002c0002t0001g0192 a0002c0002t0001g0233 a0002c0002t0001g0234 a0002c0002t0005g0109 a0002c0002t0005g0114 a0002c0002t0005g0115 a0002c0002t0005g0116 a0002c0002t0005g0190 a0002c0002t0005g0193 a0002c0002t0007g0177 a0002c0009t0001g0312 a0002c0009t0001g0313 a0002c0009t0001g0314 a0002c0009t0001g0315 a0002c0009t0001g0316 a0002c0009t0001g0317 a0002c0009t0001g0318 a0002c0040t0001g0132 a0002c0046t0001g0307 a0003c0003t0001g0075 a0003c0007t0001g0006 a0003c0007t0001g0054 a0003c0007t0001g0060 a0003c0007t0001g0097 a0003c0007t0001g0098 a0003c0007t0001g0100 a0013c0032t0001g0220	74	366	0.2022	-22	c.26 others(33): Show c.2612_*2633delAAAAAAAAAAAAAAAAAAAAAA	LCT	ENSG00000115850.10	transcript	ENST00000264162.7	protein_coding		2159		chr2	TogoVar
LCT_chr2_135782850_135842184	135835994	ATATATAT others(15): Show ATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0105 a0003c0003t0003g0105	1	366	0.0027	-22	c.640 others(37): Show c.640+514_640+535delCATATATATATATATATATATA	LCT	ENSG00000115850.10	transcript	ENST00000264162.7	protein_coding	1/16			chr2	TogoVar
LDB1_chr10_102101489_102125368	102106541	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02451.hp2 HG02717.hp1 NA20805.hp1 HG02451.hp2 HG02717.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0045 a0001c0001t0064 a0001c0001t0038 a0001c0001t0045 a0001c0001t0064	a0001c0001t0038g0054 a0001c0001t0045g0069 a0001c0001t0064g0174 a0001c0001t0038g0054 a0001c0001t0045g0069 a0001c0001t0064g0174	3	376	0.0080	-22	c.15 others(33): Show c.1530_*1551delTTTTTTTTTTTTTTTTTTTTTT	LDB1	ENSG00000198728.11	transcript	ENST00000673968.1	protein_coding	11/11	1530		chr10	TogoVar
LDB2_chr4_16496541_16903645	16547182	GTGAAGAG others(15): Show GTGAAGAGACCCGAGGCAGAAAT	G G	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	162	0.0062	-22	c.616 others(41): Show c.616-35100_616-35079delATTTCTGCCTCGGGTCTCTTCA	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	5/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16739684	ATATGTAT others(15): Show ATATGTATATATACATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	162	0.0062	-22	c.235 others(41): Show c.235+19452_235+19473delCACATATATGTATATATACATA	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	2/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16898835	GGGGAGAG others(15): Show GGGGAGAGAGAGAGAGAGAGAGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 NA19070.hp1 HG03195.hp2 NA19070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0149 a0001c0001t0002g0024 a0001c0001t0001g0149 a0001c0001t0002g0024	2	162	0.0124	-22	c.-37 others(31): Show c.-372_-351delTCTCTCTCTCTCTCTCTCTCCC	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding		191		chr4	TogoVar
LDHAL6A_chr11_18450856_18484601	18467916	TATACACA others(15): Show TATACACACACATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0193 a0001c0001t0005g0193	1	420	0.0024	-22	c.418 others(39): Show c.418+2108_418+2129delTACACACACATATATATATACA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHAL6A_chr11_18450856_18484601	18467970	TATATATA others(15): Show TATATATATACGTATATATATGC	T T	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0328 a0001c0001t0004g0328	1	420	0.0024	-22	c.418 others(39): Show c.418+2181_418+2202delGCATATATATACGTATATATAT	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHAL6A_chr11_18450856_18484601	18468027	ATATATAT others(15): Show ATATATATATACATATATATACG	A A	intron_variant intron_variant	MODIFIER	HG04115.hp2 NA19007.hp2 HG04115.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0165 a0001c0001t0005g0149 a0001c0001t0001g0165 a0001c0001t0005g0149	2	420	0.0048	-22	c.418 others(39): Show c.418+2228_418+2249delCATATATATACGTATATATATA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHC_chr11_18407318_18457063	18444604	GTATATAT others(15): Show GTATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02486.hp2 HG02559.hp2 others(3): Show HG02257.hp1 HG02486.hp2 HG02559.hp2 HG02895.hp2 HG02897.hp2 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0071 a0001c0001t0002g0022 a0001c0001t0002g0040 others(3): Show a0001c0001t0001g0071 a0001c0001t0002g0022 a0001c0001t0002g0040 a0001c0001t0002g0041 a0001c0001t0002g0043 a0001c0001t0002g0044	6	348	0.0172	-22	c.711 others(39): Show c.711-1582_711-1561delATATATATATATATATATATAT	LDHC	ENSG00000166796.12	transcript	ENST00000541669.6	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36015769	CCACCTCA others(15): Show CCACCTCATCTTCCAGGAGGTGG	C C	intron_variant intron_variant	MODIFIER	NA18949.hp1 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0107	1	236	0.0042	-22	c.47- others(39): Show c.47-20333_47-20312delCACCTCATCTTCCAGGAGGTGG	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	1/5			chr11	TogoVar
LDLRAD4_chr18_13213760_13657751	13321861	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0067 a0001c0001t0067	a0001c0001t0067g0173 a0001c0001t0067g0173	1	178	0.0056	-22	c.-38 others(43): Show c.-383+43693_-383+43714delAAAAAAAAAAAAAAAAAAAAAA	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr18	TogoVar
LDLRAD4_chr18_13213760_13657751	13655278	AGCCACTC others(15): Show AGCCACTCCACGCAGGCCCGGGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01071.hp1 HG01192.hp2 HG01071.hp1 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0025 a0001c0001t0011 a0001c0001t0025	a0001c0001t0011g0017 a0001c0001t0025g0106 a0001c0001t0011g0017 a0001c0001t0025g0106	2	178	0.0112	-22	c.96 others(33): Show c.9622_*9643delGCCACTCCACGCAGGCCCGGGG	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding		2528		chr18	TogoVar
LEF1_chr4_108042548_108173932	108099550	GTGTGTAT others(15): Show GTGTGTATGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp2 NA19240.hp1 HG02895.hp2 HG02897.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0243 a0001c0001t0003g0241 a0001c0001t0003g0242 a0001c0001t0001g0243 a0001c0001t0003g0241 a0001c0001t0003g0242	3	264	0.0114	-22	c.415 others(41): Show c.415-10315_415-10294delTACACACACACACACATACACA	LEF1	ENSG00000138795.10	transcript	ENST00000265165.6	protein_coding	3/11			chr4	TogoVar
LEKR1_chr3_156821353_157051129	156899603	TATATATA others(15): Show TATATATACACACATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00423.hp2 HG01123.hp2 others(20): Show HG00408.hp1 HG00423.hp2 HG01123.hp2 HG01433.hp1 HG02071.hp1 HG02602.hp2 HG02683.hp2 HG02976.hp2 HG04115.hp1 NA18946.hp2 NA18953.hp2 NA18956.hp1 NA18974.hp1 NA18975.hp2 NA18982.hp1 NA18988.hp2 NA18999.hp2 NA19007.hp2 NA19010.hp1 NA19054.hp1 NA19065.hp1 NA19077.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0006 a0001c0003t0001 a0001c0001t0001 a0001c0001t0006 a0001c0003t0001	a0001c0001t0001g0045 a0001c0001t0001g0143 a0001c0001t0001g0193 others(20): Show a0001c0001t0001g0045 a0001c0001t0001g0143 a0001c0001t0001g0193 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0206 a0001c0001t0001g0212 a0001c0001t0001g0241 a0001c0001t0006g0200 a0001c0003t0001g0136 a0001c0003t0001g0151 a0001c0003t0001g0192 a0001c0003t0001g0196 a0001c0003t0001g0197 a0001c0003t0001g0198 a0001c0003t0001g0202 a0001c0003t0001g0205 a0001c0003t0001g0207 a0001c0003t0001g0209 a0001c0003t0001g0210 a0001c0003t0001g0211	23	244	0.0943	-22	c.264 others(41): Show c.264-20961_264-20940delACATATATACACATATATACAC	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LEKR1_chr3_156821353_157051129	156899614	ACATATAT others(15): Show ACATATATACACATATATACACG	A A	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00423.hp1 HG00438.hp1 others(76): Show HG00323.hp1 HG00423.hp1 HG00438.hp1 HG00597.hp2 HG00621.hp1 HG00642.hp1 HG00733.hp2 HG00735.hp2 HG00741.hp2 HG01071.hp1 HG01099.hp2 HG01106.hp1 HG01106.hp2 HG01167.hp1 HG01169.hp1 HG01175.hp1 HG01243.hp2 HG01255.hp2 HG01257.hp2 HG01433.hp2 HG01515.hp1 HG01928.hp1 HG01943.hp2 HG01952.hp2 HG01993.hp1 HG02015.hp1 HG02015.hp2 HG02083.hp1 HG02109.hp2 HG02293.hp2 HG02559.hp2 HG02572.hp1 HG02602.hp1 HG02683.hp1 HG02717.hp2 HG02735.hp1 HG02896.hp1 HG02897.hp1 HG02965.hp1 HG03017.hp1 HG03453.hp2 HG03471.hp2 HG03490.hp1 HG03492.hp1 HG03834.hp1 HG03927.hp1 HG04115.hp2 HG04199.hp2 NA18522.hp1 NA18612.hp2 NA18945.hp1 NA18946.hp1 NA18948.hp2 NA18950.hp1 NA18956.hp2 NA18960.hp1 NA18973.hp2 NA18974.hp2 NA18975.hp1 NA18982.hp2 NA18983.hp2 NA18984.hp1 NA18998.hp1 NA18999.hp1 NA19000.hp2 NA19003.hp2 NA19007.hp1 NA19010.hp2 NA19030.hp2 NA19043.hp2 NA19064.hp1 NA19065.hp2 NA19083.hp2 NA19091.hp2 NA19240.hp1 NA20129.hp1 NA20300.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0008 others(1): Show a0001c0001 a0001c0003 a0001c0008 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 a0001c0003t0003 a0001c0008t0001 a0001c0009t0001	a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 others(76): Show a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0137 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0217 a0001c0001t0001g0220 a0001c0001t0001g0222 a0001c0001t0001g0224 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0242 a0001c0001t0002g0119 a0001c0003t0001g0044 a0001c0003t0001g0088 a0001c0003t0001g0089 a0001c0003t0001g0091 a0001c0003t0001g0092 a0001c0003t0001g0093 a0001c0003t0001g0118 a0001c0003t0001g0122 a0001c0003t0001g0124 a0001c0003t0001g0221 a0001c0003t0001g0223 a0001c0003t0001g0225 a0001c0003t0003g0128 a0001c0008t0001g0125 a0001c0009t0001g0219	79	244	0.3238	-22	c.264 others(41): Show c.264-20874_264-20853delCGCATATATACACATATATACA	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LEKR1_chr3_156821353_157051129	156899701	CGCATATA others(15): Show CGCATATATACACATATATACAT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp2 HG00408.hp2 others(20): Show HG00140.hp2 HG00323.hp2 HG00408.hp2 HG01071.hp2 HG01109.hp2 HG01358.hp1 HG01361.hp1 HG02027.hp1 HG02055.hp1 HG02165.hp2 HG02809.hp1 HG03041.hp1 HG03516.hp1 HG03834.hp2 HG06807.hp1 NA18986.hp2 NA18988.hp1 NA18991.hp2 NA19063.hp1 NA19077.hp1 NA19088.hp2 NA20905.hp1 NA21309.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0010 others(1): Show a0001c0001 a0001c0003 a0001c0010 a0003c0006	a0001c0001t0001 a0001c0003t0001 a0001c0010t0001 others(1): Show a0001c0001t0001 a0001c0003t0001 a0001c0010t0001 a0003c0006t0001	a0001c0001t0001g0003 a0001c0001t0001g0077 a0001c0001t0001g0081 others(20): Show a0001c0001t0001g0003 a0001c0001t0001g0077 a0001c0001t0001g0081 a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0107 a0001c0001t0001g0126 a0001c0001t0001g0138 a0001c0001t0001g0144 a0001c0001t0001g0152 a0001c0001t0001g0180 a0001c0001t0001g0194 a0001c0001t0001g0218 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0003t0001g0231 a0001c0010t0001g0195 a0003c0006t0001g0237 a0003c0006t0001g0238	23	244	0.0943	-22	c.264 others(41): Show c.264-20834_264-20813delTACATGCATATATACACATATA	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	3/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LEMD2_chr6_33766213_33794130	33766998	ACACACAC others(15): Show ACACACACACACACACACGCACG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0114 a0001c0001t0009g0114	1	400	0.0025	-22	c.56 others(33): Show c.5608_*5629delCGTGCGTGTGTGTGTGTGTGTG	LEMD2	ENSG00000161904.13	transcript	ENST00000293760.10	protein_coding		4214		chr6	TogoVar
LEPR_chr1_65415668_65646559	65483235	ATACAAAT others(15): Show ATACAAATCAATATTGATTTTTC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG00741.hp1 others(7): Show HG00280.hp1 HG00323.hp1 HG00741.hp1 HG01071.hp2 HG01074.hp2 HG01167.hp1 HG01256.hp2 HG01516.hp2 HG02895.hp2 HG03927.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0002 a0003c0005t0007 a0003c0005t0028 a0001c0001t0002 a0003c0005t0007 a0003c0005t0028	a0001c0001t0002g0139 a0001c0001t0002g0196 a0003c0005t0007g0138 others(7): Show a0001c0001t0002g0139 a0001c0001t0002g0196 a0003c0005t0007g0138 a0003c0005t0007g0166 a0003c0005t0007g0193 a0003c0005t0007g0194 a0003c0005t0007g0195 a0003c0005t0007g0197 a0003c0005t0007g0198 a0003c0005t0028g0075	10	216	0.0463	-22	c.-21 others(41): Show c.-21+57870_-21+57891delTTGATTTTTCTACAAATCAATA	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65507501	ATATATAT others(15): Show ATATATATATACATATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 NA20300.hp2 HG00738.hp1 NA20300.hp2	a0003 a0004 a0003 a0004	a0003c0004 a0004c0003 a0003c0004 a0004c0003	a0003c0004t0023 a0004c0003t0004 a0003c0004t0023 a0004c0003t0004	a0003c0004t0023g0212 a0004c0003t0004g0110 a0003c0004t0023g0212 a0004c0003t0004g0110	2	216	0.0093	-22	c.-20 others(41): Show c.-20-58035_-20-58014delACATATATATGTGTATATATAT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEPR_chr1_65415668_65646559	65518855	TTTTCTTT others(15): Show TTTTCTTTCTTTCTTTCTTTTTC	T T	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03209.hp2 HG02258.hp1 HG03209.hp2	a0003 a0005 a0003 a0005	a0003c0011 a0005c0007 a0003c0011 a0005c0007	a0003c0011t0015 a0005c0007t0002 a0003c0011t0015 a0005c0007t0002	a0003c0011t0015g0093 a0005c0007t0002g0127 a0003c0011t0015g0093 a0005c0007t0002g0127	2	216	0.0093	-22	c.-20 others(41): Show c.-20-46671_-20-46650delTTCTTTCTTTCTTTCTTTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGALS16_chr19_39650913_39665647	39663774	CTCTCTCT others(15): Show CTCTCTCTCTCTCTCTATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	442	0.0023	-22	c.32 others(33): Show c.3255_*3276delTCTCTCTCTCTCTCTATATATA	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3128		chr19	TogoVar
LGALS16_chr19_39650913_39665647	39663778	CTCTCTCT others(15): Show CTCTCTCTCTCTATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	442	0.0023	-22	c.32 others(33): Show c.3259_*3280delTCTCTCTCTCTATATATATATA	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3132		chr19	TogoVar
LGALS16_chr19_39650913_39665647	39663784	CTCTCTAT others(15): Show CTCTCTATATATATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	442	0.0023	-22	c.32 others(33): Show c.3265_*3286delTCTCTATATATATATATATATA	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3138		chr19	TogoVar
LHFPL3_chr7_104323603_104913561	104822766	CAGCAAGG others(15): Show CAGCAAGGGGCAAACACAGGGAG	C C	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0064 a0001c0001t0001g0064	1	86	0.0116	-22	c.683 others(41): Show c.683-83419_683-83398delGCAAGGGGCAAACACAGGGAGA	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr7	TogoVar

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