Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LHFPL3_chr7_104323603_104913561	104824321	TATTTTAT others(15): Show TATTTTATATATAATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0049 a0001c0001t0013g0049	1	86	0.0116	-22	c.683 others(41): Show c.683-81865_683-81844delATTTTATATATAATATATATAA	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	2/2			chr7	TogoVar
LHFPL5_chr6_35800352_35829070	35818333	ATATATAT others(15): Show ATATATATATATATATGTATTTT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01109.hp2 HG01361.hp1 others(13): Show HG00642.hp1 HG01109.hp2 HG01361.hp1 HG02055.hp1 HG02258.hp2 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02818.hp1 HG02886.hp1 HG03098.hp1 HG03130.hp2 HG03209.hp1 NA18522.hp1 NA18522.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 others(9): Show a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0034 a0001c0001t0038 a0001c0001t0041 a0001c0001t0042 a0001c0001t0071 a0001c0001t0072 a0001c0001t0074 a0001c0001t0089 a0001c0001t0090	a0001c0001t0021g0042 a0001c0001t0021g0043 a0001c0001t0021g0048 others(12): Show a0001c0001t0021g0042 a0001c0001t0021g0043 a0001c0001t0021g0048 a0001c0001t0022g0029 a0001c0001t0022g0030 a0001c0001t0023g0003 a0001c0001t0034g0093 a0001c0001t0038g0028 a0001c0001t0041g0186 a0001c0001t0042g0044 a0001c0001t0071g0035 a0001c0001t0072g0045 a0001c0001t0074g0050 a0001c0001t0089g0047 a0001c0001t0090g0049	16	386	0.0415	-22	c.650 others(39): Show c.650-1102_650-1081delATATATATATATATGTATTTTT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL5_chr6_35800352_35829070	35821449	TTGTGTGT others(15): Show TTGTGTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02717.hp2 HG03209.hp2 HG02109.hp1 HG02717.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0025 a0001c0001t0020g0026 a0001c0001t0020g0027 a0001c0001t0020g0025 a0001c0001t0020g0026 a0001c0001t0020g0027	3	386	0.0078	-22	c.17 others(39): Show c.17-1509_*17-1488delGTGTGTGTGTGTGTGTGTGTGT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL5_chr6_35800352_35829070	35823370	TACACACA others(15): Show TACACACACACATATATATACAC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02723.hp2 HG03491.hp2 HG02723.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0215 a0001c0001t0027g0252 a0001c0001t0027g0215 a0001c0001t0027g0252	2	386	0.0052	-22	c.41 others(31): Show c.417_*438delTATATATACACACACACACACA	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	4/4	3935	INFO_REALIGN_3_PRIME	chr6	TogoVar
LHFPL6_chr13_39337892_39608193	39459194	ATGTGTGT others(15): Show ATGTGTGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0068 a0001c0001t0001g0068	1	242	0.0041	-22	c.386 others(41): Show c.386-80690_386-80669delCACACACACACACACACACACA	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHPP_chr10_124456823_124619141	124457197	ATTTCTTT others(15): Show ATTTCTTTCTTTCTTTCTTTCTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 HG01891.hp1 HG02622.hp1 HG01109.hp1 HG01891.hp1 HG02622.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0002 a0001c0001t0001 a0003c0003t0002	a0001c0001t0001g0098 a0001c0001t0001g0102 a0003c0003t0002g0259 a0001c0001t0001g0098 a0001c0001t0001g0102 a0003c0003t0002g0259	3	260	0.0115	-22	c.-46 others(33): Show c.-4665_-4644delTTTCTTTCTTTCTTTCTTTCTT	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding		4625		chr10	TogoVar
LHX4_chr1_180225264_180283984	180234169	TTATATAT others(15): Show TTATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00639.hp1 HG01099.hp1 others(18): Show HG00140.hp1 HG00639.hp1 HG01099.hp1 HG01123.hp1 HG01167.hp2 HG01169.hp2 HG01175.hp1 HG02055.hp1 HG02738.hp2 HG03209.hp2 HG03453.hp2 HG04228.hp1 HG06807.hp2 NA18612.hp2 NA18969.hp2 NA18972.hp1 NA19000.hp2 NA19006.hp2 NA19012.hp1 NA19088.hp2 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0002 a0001c0001t0008 a0001c0001t0020 others(8): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0020 a0001c0001t0039 a0001c0001t0045 a0001c0001t0050 a0001c0001t0053 a0001c0003t0013 a0002c0002t0001 a0002c0002t0033 a0002c0002t0035	a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0087 others(16): Show a0001c0001t0002g0084 a0001c0001t0002g0085 a0001c0001t0002g0087 a0001c0001t0002g0088 a0001c0001t0002g0090 a0001c0001t0008g0093 a0001c0001t0008g0097 a0001c0001t0020g0094 a0001c0001t0039g0089 a0001c0001t0045g0098 a0001c0001t0050g0091 a0001c0001t0053g0028 a0001c0003t0013g0003 a0002c0002t0001g0010 a0002c0002t0001g0086 a0002c0002t0001g0092 a0002c0002t0001g0095 a0002c0002t0033g0096 a0002c0002t0035g0137	21	402	0.0522	-22	c.76+ others(37): Show c.76+3595_76+3616delTATATATATATATATATATATA	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LHX5_chr12_113457033_113476871	113461028	CTCTTTCT others(15): Show CTCTTTCTTTCTCTTTCTTTCTT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01975.hp2 HG01975.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0004 a0001c0001t0002g0004	1	396	0.0025	-22	c.21 others(33): Show c.2140_*2161delAAGAAAGAAAGAGAAAGAAAGA	LHX5	ENSG00000089116.4	transcript	ENST00000261731.4	protein_coding		1004		chr12	TogoVar
LIAT1_chr17_405325_419666	415437	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp2 HG00639.hp1 HG01099.hp1 others(78): Show HG00621.hp2 HG00639.hp1 HG01099.hp1 HG01167.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp2 HG02015.hp1 HG02055.hp1 HG02071.hp2 HG02080.hp2 HG02109.hp1 HG02129.hp1 HG02129.hp2 HG02135.hp2 HG02257.hp1 HG02280.hp1 HG02293.hp2 HG02300.hp2 HG02451.hp2 HG02486.hp1 HG02523.hp1 HG02523.hp2 HG02572.hp2 HG02717.hp1 HG02809.hp2 HG02818.hp1 HG02922.hp2 HG03130.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03453.hp2 HG03486.hp1 HG03491.hp1 HG03516.hp2 HG03654.hp2 HG04184.hp2 HG06807.hp1 NA18522.hp1 NA18612.hp2 NA18939.hp1 NA18942.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18949.hp2 NA18962.hp2 NA18964.hp2 NA18967.hp2 NA18971.hp2 NA18975.hp2 NA18979.hp2 NA18985.hp2 NA18986.hp2 NA18987.hp2 NA18988.hp1 NA18988.hp2 NA18990.hp1 NA18992.hp1 NA18993.hp2 NA19001.hp1 NA19003.hp1 NA19010.hp1 NA19043.hp1 NA19054.hp2 NA19056.hp2 NA19058.hp1 NA19065.hp1 NA19070.hp1 NA19074.hp2 NA19075.hp1 NA19077.hp2 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19090.hp1 NA19091.hp1 NA20129.hp1 NA20300.hp1 NA21309.hp2	a0004 a0005 a0006 others(8): Show a0004 a0005 a0006 a0007 a0013 a0021 a0023 a0027 a0033 a0036 a0039	a0004c0004 a0005c0005 a0006c0007 others(9): Show a0004c0004 a0005c0005 a0006c0007 a0006c0033 a0007c0006 a0013c0013 a0021c0021 a0023c0044 a0027c0035 a0033c0034 a0036c0032 a0039c0029	a0004c0004t0001 a0005c0005t0001 a0006c0007t0001 others(9): Show a0004c0004t0001 a0005c0005t0001 a0006c0007t0001 a0006c0033t0001 a0007c0006t0001 a0013c0013t0001 a0021c0021t0001 a0023c0044t0001 a0027c0035t0001 a0033c0034t0001 a0036c0032t0001 a0039c0029t0001	a0004c0004t0001g0004 a0004c0004t0001g0018 a0004c0004t0001g0020 others(20): Show a0004c0004t0001g0004 a0004c0004t0001g0018 a0004c0004t0001g0020 a0004c0004t0001g0021 a0004c0004t0001g0022 a0004c0004t0001g0025 a0005c0005t0001g0006 a0006c0007t0001g0004 a0006c0007t0001g0017 a0006c0007t0001g0026 a0006c0007t0001g0033 a0006c0033t0001g0004 a0007c0006t0001g0007 a0007c0006t0001g0024 a0007c0006t0001g0034 a0013c0013t0001g0004 a0021c0021t0001g0007 a0021c0021t0001g0035 a0023c0044t0001g0004 a0027c0035t0001g0004 a0033c0034t0001g0004 a0036c0032t0001g0016 a0039c0029t0001g0019	81	434	0.1866	-22	c.13 others(33): Show c.1323_*1344delGTGTGTGTGTGTGTGTGTGTGT	LIAT1	ENSG00000187624.9	transcript	ENST00000360127.7	protein_coding		772		chr17	TogoVar
LIFR_chr5_38469668_38561646	38553622	CTATATAT others(15): Show CTATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0046 a0001c0001t0046g0046	1	374	0.0027	-22	c.-20 others(39): Show c.-20+2690_-20+2711delTATATATATATATATATATATA	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	1/19			chr5	TogoVar
LIFR_chr5_38469668_38561646	38553652	ATATATAT others(15): Show ATATATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0049 a0001c0016t0049	a0001c0016t0049g0075 a0001c0016t0049g0075	1	374	0.0027	-22	c.-20 others(39): Show c.-20+2660_-20+2681delAATATATATATATATATATATA	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	1/19			chr5	TogoVar
LIG1_chr19_48110445_48175344	48131424	CATGTGGG others(15): Show CATGTGGGTGCTGATTTGTTTAA	C C	intron_variant intron_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0146 a0001c0002t0001g0146	1	330	0.0030	-22	c.172 others(39): Show c.1726-275_1726-254delTTAAACAAATCAGCACCCACAT	LIG1	ENSG00000105486.15	transcript	ENST00000263274.12	protein_coding	18/27			chr19	TogoVar
LILRA5_chr19_54302070_54318166	54308335	GTATATAT others(15): Show GTATATATATGTATATATAAATA	G G	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG04184.hp1 NA20805.hp1 HG02895.hp2 HG04184.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0077 a0001c0001t0002g0194 a0001c0001t0003g0166 a0001c0001t0002g0077 a0001c0001t0002g0194 a0001c0001t0003g0166	3	409	0.0073	-22	c.713 others(37): Show c.713-609_713-588delTATTTATATATACATATATATA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6			chr19	TogoVar
LILRA5_chr19_54302070_54318166	54308345	GTATATAT others(15): Show GTATATATAAATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02257.hp2 HG02615.hp2 others(3): Show HG02165.hp2 HG02257.hp2 HG02615.hp2 HG03704.hp1 NA18945.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008	a0001c0001t0002g0044 a0001c0001t0003g0132 a0001c0001t0003g0157 others(2): Show a0001c0001t0002g0044 a0001c0001t0003g0132 a0001c0001t0003g0157 a0001c0001t0008g0156 a0001c0001t0008g0160	6	409	0.0147	-22	c.713 others(37): Show c.713-619_713-598delTATATATATATATTTATATATA	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6			chr19	TogoVar
LIMD1_chr3_45589751_45691341	45594778	AACACACA others(15): Show AACACACACACACACACACACAC	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00621.hp1 HG00735.hp2 HG01123.hp2 others(26): Show HG00621.hp1 HG00735.hp2 HG01123.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01934.hp1 HG01975.hp1 HG02080.hp2 HG02132.hp2 HG02273.hp1 HG02738.hp1 HG03516.hp1 HG03834.hp1 HG03834.hp2 HG04184.hp1 HG04184.hp2 NA18522.hp1 NA18906.hp1 NA18956.hp1 NA18956.hp2 NA18960.hp2 NA18963.hp1 NA18991.hp1 NA18993.hp2 NA19062.hp1 NA19077.hp2 NA19085.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 others(10): Show a0001c0001t0005 a0001c0001t0006 a0001c0001t0014 a0001c0001t0039 a0001c0001t0155 a0001c0001t0156 a0001c0001t0157 a0001c0001t0158 a0001c0001t0159 a0001c0001t0160 a0001c0001t0161 a0001c0001t0162 a0001c0001t0163	a0001c0001t0005g0005 a0001c0001t0005g0166 a0001c0001t0005g0170 others(26): Show a0001c0001t0005g0005 a0001c0001t0005g0166 a0001c0001t0005g0170 a0001c0001t0005g0172 a0001c0001t0005g0192 a0001c0001t0005g0219 a0001c0001t0005g0222 a0001c0001t0005g0237 a0001c0001t0006g0073 a0001c0001t0006g0075 a0001c0001t0006g0085 a0001c0001t0006g0101 a0001c0001t0006g0113 a0001c0001t0006g0189 a0001c0001t0006g0251 a0001c0001t0014g0035 a0001c0001t0014g0038 a0001c0001t0014g0039 a0001c0001t0039g0016 a0001c0001t0039g0020 a0001c0001t0155g0023 a0001c0001t0156g0118 a0001c0001t0157g0247 a0001c0001t0158g0037 a0001c0001t0159g0036 a0001c0001t0160g0099 a0001c0001t0161g0208 a0001c0001t0162g0164 a0001c0001t0163g0191	29	358	0.0810	-22	c.-57 others(29): Show c.-57_-36delACACACACACACACACACACAC	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding	1/8	36	INFO_REALIGN_3_PRIME	chr3	TogoVar
LIMS1_chr2_108529470_108692246	108549279	CTTTTTTT others(15): Show CTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02717.hp1 HG03225.hp2 HG02257.hp2 HG02717.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0182 a0001c0001t0002g0183 a0001c0001t0002g0184	3	246	0.0122	-22	c.32+ others(39): Show c.32+14697_32+14718delTTTTTTTTTTTTTTTTTTTTTT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS1_chr2_108529470_108692246	108642336	TTTTTTGT others(15): Show TTTTTTGTTTTTTTTTTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00280.hp1 HG00323.hp2 others(73): Show HG00140.hp2 HG00280.hp1 HG00323.hp2 HG00639.hp1 HG01070.hp1 HG01106.hp1 HG01167.hp2 HG01168.hp1 HG01169.hp2 HG01346.hp1 HG01361.hp1 HG01981.hp2 HG01993.hp2 HG02040.hp1 HG02056.hp2 HG02486.hp2 HG02559.hp1 HG02622.hp1 HG02630.hp2 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03017.hp2 HG03239.hp2 HG03491.hp2 HG03492.hp2 HG03654.hp1 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03710.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp1 HG04184.hp2 NA18939.hp1 NA18940.hp2 NA18942.hp2 NA18945.hp1 NA18947.hp2 NA18960.hp1 NA18960.hp2 NA18962.hp1 NA18962.hp2 NA18963.hp2 NA18968.hp2 NA18969.hp1 NA18977.hp2 NA18993.hp2 NA18998.hp1 NA18999.hp2 NA19043.hp1 NA19056.hp1 NA19056.hp2 NA19062.hp2 NA19066.hp1 NA19066.hp2 NA19070.hp1 NA19074.hp1 NA19074.hp2 NA19080.hp1 NA19080.hp2 NA19081.hp1 NA19081.hp2 NA19082.hp2 NA19083.hp2 NA19087.hp2 NA19088.hp1 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20805.hp2 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0002 a0001c0004 a0003c0005 others(1): Show a0001c0002 a0001c0004 a0003c0005 a0004c0006	a0001c0002t0001 a0001c0002t0004 a0001c0002t0016 others(6): Show a0001c0002t0001 a0001c0002t0004 a0001c0002t0016 a0001c0002t0025 a0001c0002t0027 a0001c0002t0030 a0001c0004t0013 a0003c0005t0001 a0004c0006t0004	a0001c0002t0001g0002 a0001c0002t0001g0003 a0001c0002t0001g0004 others(73): Show a0001c0002t0001g0002 a0001c0002t0001g0003 a0001c0002t0001g0004 a0001c0002t0001g0008 a0001c0002t0001g0010 a0001c0002t0001g0011 a0001c0002t0001g0012 a0001c0002t0001g0013 a0001c0002t0001g0015 a0001c0002t0001g0018 a0001c0002t0001g0019 a0001c0002t0001g0020 a0001c0002t0001g0024 a0001c0002t0001g0025 a0001c0002t0001g0027 a0001c0002t0001g0028 a0001c0002t0001g0029 a0001c0002t0001g0031 a0001c0002t0001g0032 a0001c0002t0001g0033 a0001c0002t0001g0034 a0001c0002t0001g0035 a0001c0002t0001g0036 a0001c0002t0001g0037 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0042 a0001c0002t0001g0043 a0001c0002t0001g0044 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0001g0050 a0001c0002t0001g0051 a0001c0002t0001g0052 a0001c0002t0001g0053 a0001c0002t0001g0054 a0001c0002t0001g0055 a0001c0002t0001g0056 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0059 a0001c0002t0001g0060 a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0064 a0001c0002t0001g0065 a0001c0002t0001g0066 a0001c0002t0001g0069 a0001c0002t0001g0071 a0001c0002t0001g0072 a0001c0002t0004g0225 a0001c0002t0004g0226 a0001c0002t0004g0227 a0001c0002t0004g0228 a0001c0002t0004g0229 a0001c0002t0004g0230 a0001c0002t0004g0231 a0001c0002t0004g0232 a0001c0002t0004g0233 a0001c0002t0004g0234 a0001c0002t0004g0236 a0001c0002t0004g0237 a0001c0002t0004g0239 a0001c0002t0004g0240 a0001c0002t0004g0245 a0001c0002t0016g0045 a0001c0002t0016g0070 a0001c0002t0025g0026 a0001c0002t0027g0016 a0001c0002t0030g0067 a0001c0004t0013g0073 a0001c0004t0013g0074 a0003c0005t0001g0041 a0004c0006t0004g0243	76	246	0.3089	-22	c.33- others(39): Show c.33-17263_33-17242delGTTTTTTTTTTTTTTTGTTTTT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS2_chr2_127633426_127680530	127633839	AGTGGGCA others(15): Show AGTGGGCAGTGTCGCCTCGCGCC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp1 HG02074.hp2 HG00673.hp1 HG02074.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0008	a0001c0002t0008g0039 a0001c0002t0008g0040 a0001c0002t0008g0039 a0001c0002t0008g0040	2	348	0.0058	-22	c.54 others(33): Show c.5420_*5441delGGCGCGAGGCGACACTGCCCAC	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding		4586		chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668668	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG02630.hp2 HG00741.hp1 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0204 a0001c0002t0002g0205 a0001c0002t0001g0204 a0001c0002t0002g0205	2	348	0.0058	-22	c.11+ others(37): Show c.11+6324_11+6345delTTTTTTTTTTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIMS4_chr2_110440883_110477816	110461946	GCTTTGCT others(15): Show GCTTTGCTCTCCCAGAGCTTTCC	G G	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	90	0.0111	-22	c.343 others(39): Show c.343-4872_343-4851delGGAAAGCTCTGGGAGAGCAAAG	LIMS4	ENSG00000256671.7	transcript	ENST00000632897.2	protein_coding	2/9			chr2	TogoVar
LIN28B_chr6_104952107_105088332	105085807	TCACACAC others(15): Show TCACACACACACACACACACACA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0065 a0001c0001t0003g0065	1	278	0.0036	-22	c.70 others(33): Show c.7025_*7046delCACACACACACACACACACACA	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding		2476		chr6	TogoVar
LINGO2_chr9_27932617_29218601	28006315	GAAATCCT others(15): Show GAAATCCTTACCTAAGATTAAAA	G G	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01071.hp1 HG02109.hp2 others(9): Show HG00639.hp1 HG01071.hp1 HG02109.hp2 HG02451.hp1 HG02572.hp1 HG02895.hp1 HG03209.hp1 HG03209.hp2 HG03486.hp2 NA18990.hp1 NA19043.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0012 a0001c0001t0018 a0001c0001t0019 a0001c0001t0027 a0001c0001t0031 a0001c0004t0005	a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0004g0022 others(9): Show a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0004g0022 a0001c0001t0004g0039 a0001c0001t0005g0057 a0001c0001t0005g0059 a0001c0001t0012g0005 a0001c0001t0018g0015 a0001c0001t0019g0053 a0001c0001t0027g0030 a0001c0001t0031g0021 a0001c0004t0005g0054	12	62	0.1936	-22	c.-35 others(41): Show c.-35-55631_-35-55610delTTTTAATCTTAGGTAAGGATTT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28431029	TGAGAGAG others(15): Show TGAGAGAGAGAGAGAGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp1 HG00642.hp2 others(8): Show HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00741.hp1 HG00741.hp2 HG02572.hp1 HG02602.hp2 HG02809.hp1 HG02922.hp2 HG06807.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0028 a0001c0001t0031 a0001c0003t0009	a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0002g0052 others(8): Show a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0002g0052 a0001c0001t0005g0059 a0001c0001t0007g0009 a0001c0001t0013g0010 a0001c0001t0015g0012 a0001c0001t0016g0011 a0001c0001t0028g0038 a0001c0001t0031g0021 a0001c0003t0009g0036	11	62	0.1774	-22	c.-22 others(43): Show c.-228+44889_-228+44910delTCTCTCTCTCTCTCTCTCTCTC	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	4/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28479911	GTATATAT others(15): Show GTATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02572.hp2 HG02630.hp1 HG02109.hp2 HG02572.hp2 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0018 a0001c0001t0034 a0001c0001t0002 a0001c0001t0018 a0001c0001t0034	a0001c0001t0002g0028 a0001c0001t0018g0015 a0001c0001t0034g0061 a0001c0001t0002g0028 a0001c0001t0018g0015 a0001c0001t0034g0061	3	62	0.0484	-22	c.-31 others(41): Show c.-313-3908_-313-3887delTATATATATATATATATATATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28506403	TATATATA others(15): Show TATATATATATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0030 a0001c0001t0027g0030	1	62	0.0161	-22	c.-31 others(43): Show c.-313-30400_-313-30379delGTGTATATATATATATATATAT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28512591	GTGTATAT others(15): Show GTGTATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00438.hp1 HG00597.hp1 others(20): Show HG00408.hp2 HG00438.hp1 HG00597.hp1 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG00741.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01261.hp2 HG02027.hp1 HG02451.hp2 HG02602.hp1 HG02602.hp2 HG02897.hp2 HG06807.hp2 NA18990.hp1 NA18990.hp2 NA18995.hp2 NA19060.hp1 NA19060.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0020 a0001c0001t0024 a0001c0001t0029 a0001c0001t0030 a0001c0001t0032 a0001c0001t0036	a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0035 others(20): Show a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0035 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0002g0014 a0001c0001t0002g0045 a0001c0001t0002g0052 a0001c0001t0003g0025 a0001c0001t0003g0049 a0001c0001t0004g0022 a0001c0001t0004g0033 a0001c0001t0013g0010 a0001c0001t0015g0012 a0001c0001t0016g0011 a0001c0001t0017g0007 a0001c0001t0020g0042 a0001c0001t0024g0027 a0001c0001t0029g0024 a0001c0001t0030g0026 a0001c0001t0032g0023 a0001c0001t0036g0062	23	62	0.3710	-22	c.-31 others(43): Show c.-313-36588_-313-36567delTATATATATATATATATATACA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28766805	GGAAGGAG others(15): Show GGAAGGAGAGAGAGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00639.hp1 HG00639.hp2 others(20): Show HG00408.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00741.hp1 HG01071.hp2 HG01261.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp2 HG02630.hp1 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03486.hp1 HG06807.hp1 HG06807.hp2 NA18990.hp1 NA19074.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0023 a0001c0001t0025 a0001c0001t0032 a0001c0001t0034 a0002c0002t0001	a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0043 others(20): Show a0001c0001t0001g0019 a0001c0001t0001g0029 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0002g0028 a0001c0001t0003g0032 a0001c0001t0003g0034 a0001c0001t0005g0057 a0001c0001t0005g0059 a0001c0001t0006g0003 a0001c0001t0006g0004 a0001c0001t0007g0009 a0001c0001t0008g0020 a0001c0001t0009g0056 a0001c0001t0011g0002 a0001c0001t0013g0010 a0001c0001t0014g0008 a0001c0001t0016g0011 a0001c0001t0023g0037 a0001c0001t0025g0055 a0001c0001t0032g0023 a0001c0001t0034g0061 a0002c0002t0001g0050	23	62	0.3710	-22	c.-39 others(43): Show c.-394-96547_-394-96526delTCTCTCTCTCTCTCTCTCCTTC	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28771452	GGTGTGTG others(15): Show GGTGTGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0061 a0001c0001t0034g0061	1	62	0.0161	-22	c.-39 others(45): Show c.-394-101194_-394-101173delACACACACACACACACACACAC	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28797347	TATATATA others(15): Show TATATATATATATAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0009 a0001c0003t0009	a0001c0003t0009g0036 a0001c0003t0009g0036	1	62	0.0161	-22	c.-39 others(45): Show c.-394-127089_-394-127068delCTCTCTCTCTATATATATATAT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO3_chr19_2282164_2313154	2289259	TCTGGGTG others(15): Show TCTGGGTGTGAGCTGTGTGTGTC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0051 a0001c0001t0051	a0001c0001t0051g0123 a0001c0001t0051g0123	1	418	0.0024	-22	c.71 others(31): Show c.717_*738delGACACACACAGCTCACACCCAG	LINGO3	ENSG00000220008.4	transcript	ENST00000698372.1	protein_coding	2/2	717		chr19	TogoVar
LIPH_chr3_185501262_185557588	185529956	AAGAAAGA others(15): Show AAGAAAGAAGGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG02622.hp2 HG02630.hp1 others(2): Show HG00733.hp1 HG02622.hp2 HG02630.hp1 NA18982.hp1 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0003g0108 a0001c0001t0003g0114 a0001c0002t0001g0092 others(2): Show a0001c0001t0003g0108 a0001c0001t0003g0114 a0001c0002t0001g0092 a0001c0002t0001g0126 a0001c0002t0001g0279	5	358	0.0140	-22	c.527 others(39): Show c.527-2393_527-2372delCTTTCTTTCTTTCCTTCTTTCT	LIPH	ENSG00000163898.10	transcript	ENST00000296252.9	protein_coding	3/9			chr3	TogoVar
LIPI_chr21_14103813_14215955	14106194	AAAAAAAA others(15): Show AAAAAAAAAAAATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0004 a0004	a0004c0003 a0004c0003	a0004c0003t0001 a0004c0003t0001	a0004c0003t0001g0113 a0004c0003t0001g0113	1	362	0.0028	-22	c.27 others(33): Show c.2777_*2798delATATATATATATTTTTTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2618		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106196	AAAAAAAA others(15): Show AAAAAAAAAATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 HG04184.hp1 HG02572.hp1 HG04184.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0001 a0004c0003t0001 a0001c0001t0001 a0004c0003t0001	a0001c0001t0001g0206 a0004c0003t0001g0024 a0001c0001t0001g0206 a0004c0003t0001g0024	2	362	0.0055	-22	c.27 others(33): Show c.2775_*2796delATATATATATATATTTTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2616		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106198	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0006 a0006	a0006c0011 a0006c0011	a0006c0011t0001 a0006c0011t0001	a0006c0011t0001g0237 a0006c0011t0001g0237	1	362	0.0028	-22	c.27 others(33): Show c.2773_*2794delATATATATATATATATTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2614		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106200	AAAAAATA others(15): Show AAAAAATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02071.hp2 HG02155.hp2 HG02071.hp2 HG02155.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	2	362	0.0055	-22	c.27 others(33): Show c.2771_*2792delATATATATATATATATATTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2612		chr21	TogoVar
LIPN_chr10_88755020_88784626	88767644	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02148.hp1 HG02738.hp2 others(15): Show HG02080.hp2 HG02148.hp1 HG02738.hp2 NA18943.hp2 NA18952.hp2 NA18994.hp1 NA18995.hp1 NA19000.hp2 NA19003.hp2 NA19012.hp1 NA19063.hp1 NA19063.hp2 NA19065.hp1 NA19066.hp1 NA19072.hp2 NA19075.hp2 NA19079.hp1 NA19081.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0005 a0001c0002 a0001c0003 a0001c0005	a0001c0002t0001 a0001c0003t0001 a0001c0003t0008 others(1): Show a0001c0002t0001 a0001c0003t0001 a0001c0003t0008 a0001c0005t0001	a0001c0002t0001g0111 a0001c0003t0001g0040 a0001c0003t0001g0043 others(13): Show a0001c0002t0001g0111 a0001c0003t0001g0040 a0001c0003t0001g0043 a0001c0003t0001g0044 a0001c0003t0001g0200 a0001c0003t0001g0212 a0001c0003t0001g0221 a0001c0003t0001g0222 a0001c0003t0001g0245 a0001c0003t0008g0040 a0001c0003t0008g0209 a0001c0005t0001g0119 a0001c0005t0001g0141 a0001c0005t0001g0142 a0001c0005t0001g0143 a0001c0005t0001g0144	18	394	0.0457	-22	c.536 others(39): Show c.536-1121_536-1100delAAAAAAAAAAAAAAAAAAAAAA	LIPN	ENSG00000204020.6	transcript	ENST00000404459.2	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
LIPT1_chr2_99149967_99168137	99161271	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02683.hp1 HG00738.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0210 a0001c0001t0001g0216 a0001c0001t0001g0210 a0001c0001t0001g0216	2	406	0.0049	-22	c.-1- others(35): Show c.-1-684_-1-663delAAAAAAAAAAAAAAAAAAAATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161273	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG03704.hp1 NA21309.hp1 HG03704.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0162 a0001c0001t0001g0204 a0001c0001t0001g0162 a0001c0001t0001g0204	2	406	0.0049	-22	c.-1- others(35): Show c.-1-682_-1-661delAAAAAAAAAAAAAAAAAATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161275	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA19081.hp2 NA18994.hp2 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0050 a0001c0001t0001g0050	2	406	0.0049	-22	c.-1- others(35): Show c.-1-680_-1-659delAAAAAAAAAAAAAAAATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161277	AAAAAAAA others(15): Show AAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0081 a0001c0002t0001g0081	1	406	0.0025	-22	c.-1- others(35): Show c.-1-678_-1-657delAAAAAAAAAAAAAATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161279	AAAAAAAA others(15): Show AAAAAAAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0141 a0001c0002t0001g0141	1	406	0.0025	-22	c.-1- others(35): Show c.-1-676_-1-655delAAAAAAAAAAAATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161281	AAAAAAAA others(15): Show AAAAAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0142 a0001c0002t0001g0142	1	406	0.0025	-22	c.-1- others(35): Show c.-1-674_-1-653delAAAAAAAAAATATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161285	AAAAAAAA others(15): Show AAAAAAAATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0075 a0001c0002t0001g0075	1	406	0.0025	-22	c.-1- others(35): Show c.-1-670_-1-649delAAAAAATATATATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99166858	AATATATA others(15): Show AATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0012 a0001c0002t0001g0012	1	406	0.0025	-22	c.37 others(33): Show c.3780_*3801delATATATATATATATATATATAT	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding		3722		chr2	TogoVar
LMAN1_chr18_59322823_59364265	59347320	CAAAAAAA others(15): Show CAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0149 a0001c0001t0002g0149	1	386	0.0026	-22	c.822 others(37): Show c.822+171_822+192delTTTTTTTTTTTTTTTTTTTTTT	LMAN1	ENSG00000074695.6	transcript	ENST00000251047.6	protein_coding	7/12			chr18	TogoVar
LMBR1_chr7_156672791_156898183	156817504	GAGAGAGA others(15): Show GAGAGAGAGAGACAGAGACAGAC	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00280.hp2 others(163): Show HG00099.hp1 HG00140.hp1 HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00609.hp1 HG00639.hp1 HG01074.hp1 HG01081.hp2 HG01109.hp1 HG01109.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01256.hp2 HG01257.hp2 HG01361.hp1 HG01361.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp2 HG01981.hp2 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02080.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp2 HG02523.hp2 HG02572.hp1 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02717.hp2 HG02738.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp2 HG03017.hp2 HG03041.hp1 HG03098.hp2 HG03130.hp1 HG03139.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03491.hp1 HG03492.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp1 HG03710.hp1 HG03831.hp2 HG03927.hp2 HG04115.hp2 HG06807.hp1 HG06807.hp2 NA18747.hp1 NA18747.hp2 NA18940.hp1 NA18940.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18944.hp1 NA18945.hp2 NA18947.hp2 NA18949.hp2 NA18950.hp1 NA18951.hp1 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18955.hp1 NA18955.hp2 NA18956.hp1 NA18956.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp2 NA18962.hp1 NA18963.hp1 NA18963.hp2 NA18965.hp1 NA18965.hp2 NA18967.hp1 NA18967.hp2 NA18978.hp1 NA18978.hp2 NA18979.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp2 NA18986.hp1 NA18986.hp2 NA18989.hp1 NA18991.hp1 NA18991.hp2 NA18992.hp1 NA18992.hp2 NA18993.hp1 NA18995.hp1 NA18998.hp1 NA18998.hp2 NA19001.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19006.hp1 NA19006.hp2 NA19009.hp1 NA19010.hp1 NA19011.hp2 NA19012.hp2 NA19054.hp2 NA19056.hp1 NA19056.hp2 NA19058.hp2 NA19060.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp1 NA19066.hp2 NA19068.hp1 NA19074.hp1 NA19074.hp2 NA19081.hp1 NA19082.hp1 NA19085.hp1 NA19085.hp2 NA19087.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA19240.hp2 NA20805.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0003 a0001c0006 others(3): Show a0001c0001 a0001c0003 a0001c0006 a0002c0002 a0002c0004 a0003c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(88): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0020 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0030 a0001c0001t0034 a0001c0001t0037 a0001c0001t0040 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0055 a0001c0001t0069 a0001c0001t0071 a0001c0001t0072 a0001c0001t0073 a0001c0001t0100 a0001c0001t0103 a0001c0001t0104 a0001c0001t0111 a0001c0001t0117 a0001c0001t0118 a0001c0001t0119 a0001c0001t0120 a0001c0001t0125 a0001c0001t0127 a0001c0001t0128 a0001c0001t0136 a0001c0001t0143 a0001c0001t0144 a0001c0001t0145 a0001c0001t0146 a0001c0001t0148 a0001c0001t0152 a0001c0001t0154 a0001c0001t0155 a0001c0001t0156 a0001c0001t0157 a0001c0001t0158 a0001c0001t0159 a0001c0001t0161 a0001c0001t0166 a0001c0003t0024 a0001c0003t0051 a0001c0003t0101 a0001c0006t0026 a0002c0002t0005 a0002c0002t0007 a0002c0002t0011 a0002c0002t0021 a0002c0002t0032 a0002c0002t0060 a0002c0002t0075 a0002c0002t0076 a0002c0002t0078 a0002c0002t0079 a0002c0002t0080 a0002c0002t0081 a0002c0002t0082 a0002c0002t0083 a0002c0002t0084 a0002c0002t0085 a0002c0002t0086 a0002c0002t0087 a0002c0002t0088 a0002c0002t0089 a0002c0002t0090 a0002c0002t0091 a0002c0002t0097 a0002c0002t0098 a0002c0002t0099 a0002c0004t0019 a0002c0004t0061 a0002c0004t0092 a0002c0004t0124 a0003c0007t0160	a0001c0001t0001g0253 a0001c0001t0001g0255 a0001c0001t0001g0275 others(163): Show a0001c0001t0001g0253 a0001c0001t0001g0255 a0001c0001t0001g0275 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0297 a0001c0001t0001g0298 a0001c0001t0001g0305 a0001c0001t0001g0308 a0001c0001t0002g0264 a0001c0001t0003g0258 a0001c0001t0003g0262 a0001c0001t0003g0277 a0001c0001t0003g0278 a0001c0001t0003g0279 a0001c0001t0003g0282 a0001c0001t0003g0283 a0001c0001t0003g0284 a0001c0001t0003g0301 a0001c0001t0003g0306 a0001c0001t0003g0307 a0001c0001t0004g0009 a0001c0001t0004g0029 a0001c0001t0004g0038 a0001c0001t0004g0054 a0001c0001t0004g0055 a0001c0001t0004g0056 a0001c0001t0004g0057 a0001c0001t0004g0060 a0001c0001t0008g0062 a0001c0001t0009g0044 a0001c0001t0009g0045 a0001c0001t0012g0031 a0001c0001t0012g0032 a0001c0001t0012g0033 a0001c0001t0012g0037 a0001c0001t0014g0250 a0001c0001t0014g0285 a0001c0001t0014g0286 a0001c0001t0014g0287 a0001c0001t0015g0059 a0001c0001t0016g0047 a0001c0001t0016g0300 a0001c0001t0017g0267 a0001c0001t0017g0269 a0001c0001t0017g0281 a0001c0001t0018g0257 a0001c0001t0018g0259 a0001c0001t0018g0260 a0001c0001t0020g0271 a0001c0001t0025g0039 a0001c0001t0025g0040 a0001c0001t0025g0061 a0001c0001t0026g0049 a0001c0001t0027g0251 a0001c0001t0027g0270 a0001c0001t0027g0272 a0001c0001t0030g0122 a0001c0001t0034g0296 a0001c0001t0037g0299 a0001c0001t0040g0126 a0001c0001t0040g0128 a0001c0001t0041g0124 a0001c0001t0041g0127 a0001c0001t0042g0023 a0001c0001t0042g0024 a0001c0001t0043g0050 a0001c0001t0043g0053 a0001c0001t0052g0041 a0001c0001t0052g0042 a0001c0001t0053g0261 a0001c0001t0053g0309 a0001c0001t0054g0302 a0001c0001t0054g0303 a0001c0001t0055g0311 a0001c0001t0055g0312 a0001c0001t0069g0265 a0001c0001t0071g0028 a0001c0001t0072g0036 a0001c0001t0073g0035 a0001c0001t0100g0130 a0001c0001t0103g0290 a0001c0001t0104g0254 a0001c0001t0111g0048 a0001c0001t0117g0034 a0001c0001t0118g0074 a0001c0001t0119g0129 a0001c0001t0120g0070 a0001c0001t0125g0025 a0001c0001t0127g0069 a0001c0001t0128g0292 a0001c0001t0136g0030 a0001c0001t0143g0276 a0001c0001t0144g0043 a0001c0001t0145g0046 a0001c0001t0146g0058 a0001c0001t0148g0026 a0001c0001t0152g0118 a0001c0001t0154g0274 a0001c0001t0155g0273 a0001c0001t0156g0268 a0001c0001t0157g0263 a0001c0001t0158g0256 a0001c0001t0159g0266 a0001c0001t0161g0252 a0001c0001t0166g0310 a0001c0003t0024g0119 a0001c0003t0024g0120 a0001c0003t0024g0121 a0001c0003t0051g0078 a0001c0003t0051g0079 a0001c0003t0101g0027 a0001c0006t0026g0051 a0001c0006t0026g0052 a0002c0002t0005g0081 a0002c0002t0005g0087 a0002c0002t0005g0088 a0002c0002t0005g0089 a0002c0002t0005g0098 a0002c0002t0005g0112 a0002c0002t0005g0133 a0002c0002t0007g0080 a0002c0002t0007g0084 a0002c0002t0007g0086 a0002c0002t0007g0092 a0002c0002t0007g0102 a0002c0002t0007g0104 a0002c0002t0011g0103 a0002c0002t0011g0106 a0002c0002t0011g0108 a0002c0002t0011g0110 a0002c0002t0011g0111 a0002c0002t0021g0107 a0002c0002t0021g0109 a0002c0002t0021g0116 a0002c0002t0032g0093 a0002c0002t0032g0114 a0002c0002t0060g0008 a0002c0002t0075g0090 a0002c0002t0076g0097 a0002c0002t0078g0096 a0002c0002t0079g0117 a0002c0002t0080g0105 a0002c0002t0081g0113 a0002c0002t0082g0094 a0002c0002t0083g0099 a0002c0002t0084g0115 a0002c0002t0085g0091 a0002c0002t0086g0100 a0002c0002t0087g0101 a0002c0002t0088g0082 a0002c0002t0089g0085 a0002c0002t0090g0083 a0002c0002t0091g0095 a0002c0002t0097g0077 a0002c0002t0098g0073 a0002c0002t0099g0076 a0002c0004t0019g0075 a0002c0004t0061g0072 a0002c0004t0092g0071 a0002c0004t0124g0068 a0003c0007t0160g0280	166	314	0.5287	-22	c.319 others(39): Show c.319+9079_319+9100delGTCTGTCTCTGTCTCTCTCTCT	LMBR1	ENSG00000105983.23	transcript	ENST00000353442.10	protein_coding	4/16			chr7	TogoVar
LMF1_chr16_848634_975984	852377	GTGTGACT others(15): Show GTGTGACTTGACCCCACATGCCC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0050 a0001c0002t0006g0050	1	294	0.0034	-22	c.21 others(33): Show c.2133_*2154delGGGCATGTGGGGTCAAGTCACA	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding		1256		chr16	TogoVar
LMF1_chr16_848634_975984	858169	CGTGGTGT others(15): Show CGTGGTGTCACGGGATGGGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03516.hp1 HG02976.hp1 HG03516.hp1	a0009 a0009	a0009c0024 a0009c0024	a0009c0024t0001 a0009c0024t0001	a0009c0024t0001g0117 a0009c0024t0001g0118 a0009c0024t0001g0117 a0009c0024t0001g0118	2	294	0.0068	-22	c.153 others(41): Show c.1530-3485_1530-3464delCACACCCATCCCGTGACACCAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	858566	GAGTGGTG others(15): Show GAGTGGTGTCTCGGGACGGGTGT	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00733.hp2 HG00099.hp2 HG00733.hp2	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0001 a0003c0009t0001	a0003c0009t0001g0001 a0003c0009t0001g0004 a0003c0009t0001g0001 a0003c0009t0001g0004	2	294	0.0068	-22	c.153 others(41): Show c.1530-3882_1530-3861delACACCCGTCCCGAGACACCACT	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMLN_chr3_197955217_198048720	197975488	TGCACACA others(15): Show TGCACACACACGCGCACGTGCAC	T T	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02970.hp1 HG02886.hp2 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0054 a0001c0001t0023g0055 a0001c0001t0023g0054 a0001c0001t0023g0055	2	258	0.0078	-22	c.324 others(37): Show c.324+426_324+447delCGCGCACGTGCACGCACACACA	LMLN	ENSG00000185621.11	transcript	ENST00000420910.7	protein_coding	3/16		INFO_REALIGN_3_PRIME	chr3	TogoVar

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