Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LIPT1_chr2_99149967_99168137	99161270	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAAAAT	A A	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0205	1	406	0.0025	-23	c.-1- others(36): Show c.-1-685_-1-663delAAAAAAAAAAAAAAAAAAAAATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIPT1_chr2_99149967_99168137	99161272	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAAAATAT	A A	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01175.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0213 a0001c0001t0001g0213	1	406	0.0025	-23	c.-1- others(36): Show c.-1-683_-1-661delAAAAAAAAAAAAAAAAAAATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LKAAEAR1_chr20_64078376_64089398	64089129	GGGGTTTG others(16): Show GGGGTTTGCCGCAGGCACAAGGGA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	102	0.0098	-23	c.-49 others(34): Show c.-4933_-4911delTCCCTTGTGCCTGCGGCAAACCC	LKAAEAR1	ENSG00000171695.11	transcript	ENST00000302096.5	protein_coding		4732		chr20	TogoVar
LMCD1_chr3_8496823_8579668	8543378	TGATAGAT others(16): Show TGATAGATAGATAGATAGATGATA	T T	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00423.hp1 HG00642.hp1 others(21): Show HG00408.hp2 HG00423.hp1 HG00642.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01069.hp2 HG01071.hp1 HG01256.hp2 HG01258.hp1 HG02647.hp2 HG02896.hp2 HG02965.hp2 HG03017.hp1 HG03471.hp2 HG03669.hp1 HG03688.hp1 HG04199.hp2 NA18950.hp2 NA18956.hp2 NA18969.hp2 NA18981.hp1 NA18984.hp2 homoSapiens_chm13v2.hp1	a0001 a0009 a0010 a0001 a0009 a0010	a0001c0001 a0001c0002 a0009c0005 others(1): Show a0001c0001 a0001c0002 a0009c0005 a0010c0011	a0001c0001t0001 a0001c0001t0003 a0001c0001t0035 others(9): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0035 a0001c0002t0001 a0001c0002t0003 a0001c0002t0011 a0001c0002t0019 a0001c0002t0041 a0001c0002t0054 a0001c0002t0056 a0009c0005t0003 a0010c0011t0001	a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0299 others(20): Show a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0306 a0001c0001t0003g0262 a0001c0001t0003g0267 a0001c0001t0035g0253 a0001c0002t0001g0008 a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0001g0297 a0001c0002t0001g0304 a0001c0002t0003g0139 a0001c0002t0003g0212 a0001c0002t0003g0273 a0001c0002t0011g0211 a0001c0002t0019g0220 a0001c0002t0041g0258 a0001c0002t0054g0213 a0001c0002t0056g0219 a0009c0005t0003g0092 a0010c0011t0001g0256	24	314	0.0764	-23	c.388 others(40): Show c.388-5170_388-5148delGATAGATAGATAGATAGATAGAT	LMCD1	ENSG00000071282.12	transcript	ENST00000157600.8	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
LMF1_chr16_848634_975984	853379	ACAGCGTC others(16): Show ACAGCGTCCTGGGTGGGGGACGTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0001 a0001c0012t0001	a0001c0012t0001g0094 a0001c0012t0001g0094	1	294	0.0034	-23	c.11 others(34): Show c.1130_*1152delAACGTCCCCCACCCAGGACGCTG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding		254		chr16	TogoVar
LMF1_chr16_848634_975984	857508	TCGGGACG others(16): Show TCGGGACGGGTGTGAGTGGTGTCA	T T	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG03579.hp2 HG01109.hp1 HG03579.hp2	a0001 a0017 a0001 a0017	a0001c0002 a0017c0050 a0001c0002 a0017c0050	a0001c0002t0011 a0017c0050t0001 a0001c0002t0011 a0017c0050t0001	a0001c0002t0011g0292 a0017c0050t0001g0051 a0001c0002t0011g0292 a0017c0050t0001g0051	2	294	0.0068	-23	c.153 others(42): Show c.1530-2825_1530-2803delTGACACCACTCACACCCGTCCCG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	857595	GTGTCACG others(16): Show GTGTCACGGGACGGGTGTGAGTGA	G G	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03516.hp1 HG02976.hp1 HG03516.hp1	a0009 a0009	a0009c0024 a0009c0024	a0009c0024t0001 a0009c0024t0001	a0009c0024t0001g0117 a0009c0024t0001g0118 a0009c0024t0001g0117 a0009c0024t0001g0118	2	294	0.0068	-23	c.153 others(42): Show c.1530-2912_1530-2890delTCACTCACACCCGTCCCGTGACA	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	857683	AGTGGTGT others(16): Show AGTGGTGTCTCGGGACGGGTGTGC	A A	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG03225.hp1 HG02280.hp2 HG03225.hp1	a0007 a0022 a0007 a0022	a0007c0046 a0022c0042 a0007c0046 a0022c0042	a0007c0046t0004 a0022c0042t0001 a0007c0046t0004 a0022c0042t0001	a0007c0046t0004g0036 a0022c0042t0001g0084 a0007c0046t0004g0036 a0022c0042t0001g0084	2	294	0.0068	-23	c.153 others(42): Show c.1530-3000_1530-2978delGCACACCCGTCCCGAGACACCAC	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	858201	TCGGGATG others(16): Show TCGGGATGGGTGTGCGTGGTGTCA	T T	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0010 a0010	a0010c0047 a0010c0047	a0010c0047t0010 a0010c0047t0010	a0010c0047t0010g0281 a0010c0047t0010g0281	1	294	0.0034	-23	c.153 others(42): Show c.1530-3518_1530-3496delTGACACCACGCACACCCATCCCG	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	858309	CAGTGGTG others(16): Show CAGTGGTGTCTCGGGATGGGTGTG	C C	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0010 a0010	a0010c0047 a0010c0047	a0010c0047t0010 a0010c0047t0010	a0010c0047t0010g0281 a0010c0047t0010g0281	1	294	0.0034	-23	c.153 others(42): Show c.1530-3626_1530-3604delCACACCCATCCCGAGACACCACT	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	858543	CAGTGGTG others(16): Show CAGTGGTGTCTCGGGACGGGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01168.hp2 HG01175.hp1 others(8): Show HG01109.hp2 HG01168.hp2 HG01175.hp1 HG01243.hp2 HG02004.hp2 HG02074.hp1 HG02129.hp1 HG03834.hp1 NA18612.hp1 NA18967.hp1 NA20905.hp1	a0001 a0002 a0015 a0001 a0002 a0015	a0001c0001 a0001c0002 a0001c0005 others(4): Show a0001c0001 a0001c0002 a0001c0005 a0001c0013 a0002c0007 a0002c0017 a0015c0066	a0001c0001t0001 a0001c0002t0001 a0001c0005t0001 others(4): Show a0001c0001t0001 a0001c0002t0001 a0001c0005t0001 a0001c0013t0001 a0002c0007t0001 a0002c0017t0001 a0015c0066t0001	a0001c0001t0001g0184 a0001c0001t0001g0192 a0001c0001t0001g0201 others(8): Show a0001c0001t0001g0184 a0001c0001t0001g0192 a0001c0001t0001g0201 a0001c0001t0001g0211 a0001c0001t0001g0232 a0001c0002t0001g0039 a0001c0005t0001g0248 a0001c0013t0001g0043 a0002c0007t0001g0141 a0002c0017t0001g0096 a0015c0066t0001g0153	11	294	0.0374	-23	c.153 others(42): Show c.1530-3860_1530-3838delCACACCCGTCCCGAGACACCACT	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	859791	CAGTGATG others(16): Show CAGTGATGTCACGAGATGGGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0007 a0007	a0007c0046 a0007c0046	a0007c0046t0004 a0007c0046t0004	a0007c0046t0004g0036 a0007c0046t0004g0036	1	294	0.0034	-23	c.153 others(42): Show c.1530-5108_1530-5086delCACACCCATCTCGTGACATCACT	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	10/10			chr16	TogoVar
LMF1_chr16_848634_975984	910599	AAGGAGGG others(16): Show AAGGAGGGCTGGTGGGGGAAGCTC	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00423.hp1 HG01993.hp2 others(8): Show HG00140.hp2 HG00423.hp1 HG01993.hp2 HG02027.hp1 HG02056.hp2 HG03831.hp1 NA18612.hp2 NA18951.hp1 NA19003.hp2 NA19066.hp2 NA20129.hp1	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0012	a0001c0005 a0003c0014 a0003c0015 others(2): Show a0001c0005 a0003c0014 a0003c0015 a0005c0027 a0012c0031	a0001c0005t0001 a0003c0014t0001 a0003c0015t0001 others(2): Show a0001c0005t0001 a0003c0014t0001 a0003c0015t0001 a0005c0027t0001 a0012c0031t0001	a0001c0005t0001g0129 a0001c0005t0001g0130 a0003c0014t0001g0009 others(8): Show a0001c0005t0001g0129 a0001c0005t0001g0130 a0003c0014t0001g0009 a0003c0014t0001g0010 a0003c0014t0001g0015 a0003c0014t0001g0016 a0003c0015t0001g0011 a0003c0015t0001g0013 a0003c0015t0001g0014 a0005c0027t0001g0032 a0012c0031t0001g0012	11	294	0.0374	-23	c.663 others(38): Show c.663+309_663+331delGAGCTTCCCCCACCAGCCCTCCT	LMF1	ENSG00000103227.19	transcript	ENST00000262301.16	protein_coding	4/10			chr16	TogoVar
LMO1_chr11_8219309_8268878	8254609	TATGGTCC others(16): Show TATGGTCCCTCCCCACCGAGGCTG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00140.hp2 others(138): Show HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00280.hp1 HG00408.hp1 HG00423.hp2 HG00544.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00621.hp1 HG00621.hp2 HG00673.hp1 HG00673.hp2 HG00733.hp2 HG00738.hp2 HG01071.hp2 HG01074.hp1 HG01074.hp2 HG01081.hp2 HG01106.hp1 HG01106.hp2 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01169.hp2 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp2 HG01361.hp1 HG01433.hp2 HG01515.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01978.hp1 HG02004.hp2 HG02027.hp1 HG02027.hp2 HG02055.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp2 HG02132.hp2 HG02148.hp1 HG02155.hp1 HG02155.hp2 HG02273.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02602.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG03130.hp1 HG03471.hp1 HG03491.hp2 HG03492.hp2 HG03654.hp2 HG03688.hp2 HG03710.hp2 HG03831.hp1 HG03942.hp1 HG03942.hp2 HG04115.hp1 HG04204.hp2 HG06807.hp1 HG06807.hp2 NA18612.hp1 NA18939.hp1 NA18939.hp2 NA18940.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18948.hp1 NA18953.hp1 NA18954.hp1 NA18961.hp2 NA18963.hp2 NA18965.hp2 NA18968.hp1 NA18970.hp1 NA18971.hp2 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18975.hp2 NA18979.hp1 NA18981.hp2 NA18982.hp2 NA18983.hp2 NA18984.hp2 NA18986.hp1 NA18988.hp1 NA18989.hp2 NA18990.hp2 NA18991.hp1 NA18991.hp2 NA18995.hp1 NA18999.hp1 NA19000.hp2 NA19002.hp2 NA19004.hp1 NA19005.hp1 NA19054.hp1 NA19057.hp2 NA19060.hp2 NA19063.hp2 NA19064.hp1 NA19067.hp2 NA19078.hp1 NA19079.hp2 NA19081.hp1 NA19082.hp1 NA19082.hp2 NA19084.hp1 NA19085.hp2 NA19086.hp2 NA19087.hp1 NA19088.hp2 NA19090.hp1 NA19090.hp2 NA19091.hp1 NA19091.hp2 NA20752.hp1 NA20752.hp2 NA20805.hp1 NA20905.hp1 NA20905.hp2 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0008 a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0003t0004 a0001c0003t0011 a0001c0004t0001 a0001c0005t0001	a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 others(124): Show a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0103 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0147 a0001c0001t0001g0148 a0001c0001t0001g0151 a0001c0001t0001g0158 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0174 a0001c0001t0001g0180 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0200 a0001c0001t0001g0203 a0001c0001t0001g0207 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0219 a0001c0001t0001g0222 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0002g0320 a0001c0001t0002g0359 a0001c0001t0002g0364 a0001c0001t0002g0365 a0001c0001t0002g0374 a0001c0001t0007g0224 a0001c0001t0008g0169 a0001c0002t0001g0002 a0001c0002t0001g0005 a0001c0002t0001g0016 a0001c0002t0001g0040 a0001c0002t0001g0068 a0001c0002t0001g0070 a0001c0002t0001g0144 a0001c0002t0001g0149 a0001c0002t0001g0150 a0001c0002t0001g0152 a0001c0002t0001g0153 a0001c0002t0001g0154 a0001c0002t0001g0155 a0001c0002t0001g0157 a0001c0002t0001g0159 a0001c0002t0001g0160 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0002t0001g0164 a0001c0002t0001g0165 a0001c0002t0001g0166 a0001c0002t0001g0167 a0001c0002t0001g0171 a0001c0002t0001g0172 a0001c0002t0001g0173 a0001c0002t0001g0175 a0001c0002t0001g0176 a0001c0002t0001g0177 a0001c0002t0001g0181 a0001c0002t0001g0182 a0001c0002t0001g0184 a0001c0002t0001g0188 a0001c0002t0001g0192 a0001c0002t0001g0193 a0001c0002t0001g0194 a0001c0002t0001g0195 a0001c0002t0001g0196 a0001c0002t0001g0197 a0001c0002t0001g0198 a0001c0002t0001g0201 a0001c0002t0001g0202 a0001c0002t0001g0205 a0001c0002t0001g0206 a0001c0002t0001g0208 a0001c0002t0001g0210 a0001c0002t0001g0212 a0001c0002t0001g0213 a0001c0002t0001g0214 a0001c0002t0001g0215 a0001c0002t0001g0221 a0001c0002t0001g0225 a0001c0002t0001g0258 a0001c0002t0001g0266 a0001c0002t0002g0024 a0001c0002t0002g0375 a0001c0002t0002g0376 a0001c0002t0002g0377 a0001c0003t0001g0004 a0001c0003t0001g0156 a0001c0003t0001g0168 a0001c0003t0001g0179 a0001c0003t0001g0183 a0001c0003t0001g0199 a0001c0003t0001g0204 a0001c0003t0004g0308 a0001c0003t0011g0269 a0001c0004t0001g0009 a0001c0004t0001g0047 a0001c0004t0001g0052 a0001c0005t0001g0178	141	424	0.3326	-23	c.25+ others(38): Show c.25+8706_25+8728delCAGCCTCGGTGGGGAGGGACCAT	LMO1	ENSG00000166407.14	transcript	ENST00000335790.8	protein_coding	1/3			chr11	TogoVar
LMO7_chr13_75631330_75864866	75673958	GTAAATCA others(16): Show GTAAATCAAACTAACTGAGGAATT	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(24): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00673.hp1 HG00735.hp1 HG00738.hp2 HG01168.hp2 HG01496.hp1 HG02040.hp1 HG02523.hp2 HG02698.hp1 HG02735.hp1 HG03490.hp1 HG03492.hp1 HG03669.hp1 HG03704.hp1 HG03942.hp2 HG04184.hp1 NA18747.hp2 NA18949.hp1 NA18983.hp1 NA19060.hp2 NA19077.hp1 NA19082.hp1 NA20752.hp2 NA20905.hp1 NA21309.hp2	a0001 a0002 a0003 others(6): Show a0001 a0002 a0003 a0004 a0005 a0008 a0009 a0019 a0020	a0001c0001 a0001c0021 a0002c0003 others(8): Show a0001c0001 a0001c0021 a0002c0003 a0002c0011 a0003c0002 a0004c0013 a0005c0005 a0008c0008 a0009c0010 a0019c0034 a0020c0033	a0001c0001t0002 a0001c0021t0001 a0002c0003t0001 others(8): Show a0001c0001t0002 a0001c0021t0001 a0002c0003t0001 a0002c0011t0002 a0003c0002t0001 a0004c0013t0002 a0005c0005t0003 a0008c0008t0003 a0009c0010t0017 a0019c0034t0002 a0020c0033t0002	a0001c0001t0002g0085 a0001c0021t0001g0182 a0002c0003t0001g0253 others(24): Show a0001c0001t0002g0085 a0001c0021t0001g0182 a0002c0003t0001g0253 a0002c0003t0001g0255 a0002c0003t0001g0256 a0002c0003t0001g0257 a0002c0003t0001g0258 a0002c0003t0001g0259 a0002c0011t0002g0031 a0002c0011t0002g0038 a0002c0011t0002g0071 a0002c0011t0002g0075 a0002c0011t0002g0076 a0002c0011t0002g0084 a0003c0002t0001g0006 a0004c0013t0002g0019 a0004c0013t0002g0057 a0004c0013t0002g0059 a0004c0013t0002g0061 a0004c0013t0002g0104 a0005c0005t0003g0254 a0008c0008t0003g0005 a0008c0008t0003g0168 a0008c0008t0003g0169 a0009c0010t0017g0004 a0019c0034t0002g0073 a0020c0033t0002g0074	27	272	0.0993	-23	c.69+ others(40): Show c.69+37240_69+37262delAACTAACTGAGGAATTTAAATCA	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr13	TogoVar
LMOD1_chr1_201891456_201951548	201924666	AAAGAAAG others(16): Show AAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG01358.hp1 HG01978.hp1 others(5): Show HG01258.hp2 HG01358.hp1 HG01978.hp1 HG02056.hp2 HG02145.hp1 HG02818.hp1 HG03492.hp1 NA18975.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0002c0002t0012 a0001c0001t0001 a0002c0002t0002 a0002c0002t0012	a0001c0001t0001g0124 a0001c0001t0001g0319 a0001c0001t0001g0322 others(5): Show a0001c0001t0001g0124 a0001c0001t0001g0319 a0001c0001t0001g0322 a0001c0001t0001g0332 a0001c0001t0001g0333 a0002c0002t0002g0040 a0002c0002t0002g0074 a0002c0002t0012g0047	8	400	0.0200	-23	c.261 others(42): Show c.261+21391_261+21413delCTTTCTTTCTTTCTTTCTTTCTT	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding	1/2			chr1	TogoVar
LMOD3_chr3_69101065_69127595	69107453	GTTTTTTT others(16): Show GTTTTTTTTTTTTTTTTTTTTTTT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02970.hp1 HG03516.hp1 HG02970.hp1 HG03516.hp1	a0002 a0002	a0002c0012 a0002c0024 a0002c0012 a0002c0024	a0002c0012t0145 a0002c0024t0077 a0002c0012t0145 a0002c0024t0077	a0002c0012t0145g0326 a0002c0024t0077g0097 a0002c0012t0145g0326 a0002c0024t0077g0097	2	428	0.0047	-23	c.16 others(34): Show c.1619_*1641delAAAAAAAAAAAAAAAAAAAAAAA	LMOD3	ENSG00000163380.16	transcript	ENST00000420581.7	protein_coding	3/3	1619		chr3	TogoVar
LOC127933115_chrX_23778278_23788367	23781874	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01070.hp1 HG03130.hp1 NA18991.hp1 others(3): Show HG01070.hp1 HG03130.hp1 NA18991.hp1 NA18991.hp2 NA19007.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	6	334	0.0180	-23	c.-14 others(34): Show c.-1403_-1381delAAAAAAAAAAAAAAAAAAAAAAA	LOC127933115	ENSG00000288706.1	transcript	ENST00000683890.1	protein_coding		1403		chrX	TogoVar
LOC128092252_chr15_50643802_50691717	50679501	GTATATAT others(16): Show GTATATATATAATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02809.hp2 HG03540.hp1 HG02647.hp2 HG02809.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0198 a0001c0001t0000g0199 a0001c0001t0000g0200 a0001c0001t0000g0198 a0001c0001t0000g0199 a0001c0001t0000g0200	3	388	0.0077	-23	c.187 others(40): Show c.187+7007_187+7029delTATATATATATATTATATATATA	LOC128092252	ENSG00000288645.1	transcript	ENST00000676296.1	protein_coding	1/3			chr15	TogoVar
LOC128462377_chr16_89312046_89423292	89408476	GTGGCCGA others(16): Show GTGGCCGACCCAGATTCCCTCACC	G G	intron_variant intron_variant	MODIFIER	HG02293.hp1 HG02293.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0333 a0001c0001t0000g0333	1	366	0.0027	-23	c.9+9 others(36): Show c.9+9785_9+9807delGGTGAGGGAATCTGGGTCGGCCA	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LONP1_chr19_5686834_5725146	5695696	TCTGGGTG others(16): Show TCTGGGTGGGAGCCACAGGCCCCA	T T	intron_variant intron_variant	MODIFIER	NA18940.hp1 NA18954.hp1 NA18964.hp2 others(2): Show NA18940.hp1 NA18954.hp1 NA18964.hp2 NA18972.hp1 NA19074.hp2	a0001 a0011 a0001 a0011	a0001c0001 a0011c0021 a0001c0001 a0011c0021	a0001c0001t0001 a0011c0021t0001 a0001c0001t0001 a0011c0021t0001	a0001c0001t0001g0262 a0001c0001t0001g0273 a0001c0001t0001g0330 others(2): Show a0001c0001t0001g0262 a0001c0001t0001g0273 a0001c0001t0001g0330 a0001c0001t0001g0363 a0011c0021t0001g0274	5	386	0.0130	-23	c.201 others(40): Show c.2013+335_2013+357delTGGGGCCTGTGGCTCCCACCCAG	LONP1	ENSG00000196365.12	transcript	ENST00000360614.8	protein_coding	13/17			chr19	TogoVar
LONRF2_chr2_100266875_100327501	100270000	AGCAGCAT others(16): Show AGCAGCATACTTGAATGTTTACAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0066 a0002c0005t0066	a0002c0005t0066g0179 a0002c0005t0066g0179	1	368	0.0027	-23	c.14 others(36): Show c.14275_*14297delCTGTAAACATTCAAGTATGCTGC	LONRF2	ENSG00000170500.13	transcript	ENST00000393437.8	protein_coding		1874		chr2	TogoVar
LPAR1_chr9_110868263_111043470	110876993	CCATATGT others(16): Show CCATATGTGTAATCAGGCAGGCTA	C C	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03710.hp1 HG02735.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0286 a0001c0001t0002g0289 a0001c0001t0002g0286 a0001c0001t0002g0289	2	302	0.0066	-23	c.794 others(40): Show c.794-1294_794-1272delTAGCCTGCCTGATTACACATATG	LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	5/5			chr9	TogoVar
LPAR1_chr9_110868263_111043470	110992595	ATTCATAA others(16): Show ATTCATAAATGAATGGACAAATTG	A A	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0247 a0001c0001t0004g0247	1	302	0.0033	-23	c.-18 others(44): Show c.-181-19060_-181-19038delCAATTTGTCCATTCATTTATGAA	LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5			chr9	TogoVar
LPA_chr6_160526482_160669275	160653997	TATATATA others(16): Show TATATATAATATATATTATATATA	T T	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0015 a0015	a0015c0022 a0015c0022	a0015c0022t0003 a0015c0022t0003	a0015c0022t0003g0133 a0015c0022t0003g0133	1	148	0.0068	-23	c.50- others(38): Show c.50-3523_50-3501delTATATATAATATATATTATATAT	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	1/38			chr6	TogoVar
LPGAT1_chr1_211738457_211835763	211749356	AGAGTTTG others(16): Show AGAGTTTGTTACTGCAACAGACTG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG02622.hp2 HG00639.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0052 a0001c0001t0021g0075 a0001c0001t0021g0052 a0001c0001t0021g0075	2	332	0.0060	-23	c.52 others(32): Show c.520_*542delCAGTCTGTTGCAGTAACAAACTC	LPGAT1	ENSG00000123684.13	transcript	ENST00000366997.9	protein_coding	8/8	520		chr1	TogoVar
LPIN1_chr2_11741632_11832409	11814567	TTGTTTTA others(16): Show TTGTTTTAAGGATGAAATGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0005 a0002c0010t0005	a0002c0010t0005g0008 a0002c0010t0005g0008	1	278	0.0036	-23	c.225 others(40): Show c.2250-519_2250-497delGTTTTAAGGATGAAATGAGAGAT	LPIN1	ENSG00000134324.12	transcript	ENST00000674199.1	protein_coding	17/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
LPIN1_chr2_11741632_11832409	11823509	TATTAAAT others(16): Show TATTAAATATACACACTCGGCTTC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00738.hp1 HG01081.hp1 others(28): Show HG00639.hp2 HG00738.hp1 HG01081.hp1 HG01175.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp2 HG01433.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp1 HG02109.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp2 HG02615.hp2 HG02622.hp1 HG02723.hp2 HG02897.hp2 HG02976.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp2 HG03239.hp1 HG03486.hp2 HG03540.hp1 HG04228.hp2 NA18522.hp2 NA20905.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004	a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 others(9): Show a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0018 a0001c0001t0026 a0001c0001t0028 a0001c0001t0037 a0001c0001t0038 a0001c0002t0006 a0001c0002t0008 a0001c0003t0009 a0001c0004t0006	a0001c0001t0006g0035 a0001c0001t0006g0036 a0001c0001t0006g0037 others(28): Show a0001c0001t0006g0035 a0001c0001t0006g0036 a0001c0001t0006g0037 a0001c0001t0006g0039 a0001c0001t0006g0041 a0001c0001t0006g0056 a0001c0001t0006g0079 a0001c0001t0006g0163 a0001c0001t0008g0001 a0001c0001t0008g0006 a0001c0001t0008g0019 a0001c0001t0008g0038 a0001c0001t0008g0043 a0001c0001t0008g0044 a0001c0001t0008g0045 a0001c0001t0009g0108 a0001c0001t0009g0229 a0001c0001t0018g0032 a0001c0001t0026g0034 a0001c0001t0028g0080 a0001c0001t0037g0236 a0001c0001t0038g0001 a0001c0002t0006g0153 a0001c0002t0006g0155 a0001c0002t0008g0081 a0001c0003t0009g0049 a0001c0003t0009g0050 a0001c0003t0009g0051 a0001c0003t0009g0090 a0001c0003t0009g0137 a0001c0004t0006g0072	31	278	0.1115	-23	c.262 others(42): Show c.2622-1119_2622-1097delAAATATACACACTCGGCTTCATT	LPIN1	ENSG00000134324.12	transcript	ENST00000674199.1	protein_coding	20/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
LPP_chr3_188149157_188895671	188755809	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA19030.hp2 HG02109.hp1 NA19030.hp2	a0001 a0007 a0001 a0007	a0001c0002 a0007c0012 a0001c0002 a0007c0012	a0001c0002t0047 a0007c0012t0014 a0001c0002t0047 a0007c0012t0014	a0001c0002t0047g0033 a0007c0012t0014g0045 a0001c0002t0047g0033 a0007c0012t0014g0045	2	76	0.0263	-23	c.124 others(42): Show c.1241-4270_1241-4248delAAAAAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	8/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188760980	TTACTTAA others(16): Show TTACTTAATCTACCTGTTAAACTA	T T	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0021 a0002c0007t0021	a0002c0007t0021g0063 a0002c0007t0021g0063	1	76	0.0132	-23	c.141 others(40): Show c.1410+700_1410+722delACTTAATCTACCTGTTAAACTAT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150266073	AGTAACTA others(16): Show AGTAACTAAAATCTGAACAGATTT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00544.hp2 HG00597.hp1 others(66): Show HG00423.hp1 HG00544.hp2 HG00597.hp1 HG00733.hp1 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01099.hp2 HG01167.hp1 HG01243.hp2 HG01255.hp1 HG01255.hp2 HG01515.hp2 HG01517.hp2 HG01891.hp1 HG01934.hp1 HG02027.hp1 HG02055.hp2 HG02074.hp1 HG02109.hp1 HG02129.hp2 HG02132.hp2 HG02135.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp2 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03195.hp1 HG03225.hp1 HG03491.hp1 HG03491.hp2 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG03654.hp2 HG03831.hp2 HG04115.hp1 HG04115.hp2 NA18522.hp1 NA18612.hp1 NA18906.hp2 NA18939.hp2 NA18948.hp1 NA18952.hp1 NA18957.hp1 NA18959.hp1 NA18962.hp1 NA18962.hp2 NA18966.hp2 NA18970.hp2 NA18978.hp1 NA18984.hp1 NA18986.hp1 NA19007.hp1 NA19030.hp1 NA19060.hp1 NA19062.hp2 NA19079.hp2 NA19084.hp1 NA19088.hp2 NA19091.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0005 others(4): Show a0001 a0002 a0005 a0006 a0012 a0019 a0022	a0001c0001 a0001c0005 a0001c0032 others(10): Show a0001c0001 a0001c0005 a0001c0032 a0002c0002 a0002c0003 a0002c0015 a0002c0040 a0005c0011 a0005c0038 a0006c0008 a0012c0018 a0019c0033 a0022c0039	a0001c0001t0001 a0001c0005t0001 a0001c0032t0001 others(10): Show a0001c0001t0001 a0001c0005t0001 a0001c0032t0001 a0002c0002t0001 a0002c0003t0001 a0002c0015t0001 a0002c0040t0001 a0005c0011t0001 a0005c0038t0001 a0006c0008t0001 a0012c0018t0001 a0019c0033t0001 a0022c0039t0001	a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0009 others(66): Show a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0046 a0001c0001t0001g0055 a0001c0001t0001g0058 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0097 a0001c0001t0001g0100 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0153 a0001c0005t0001g0004 a0001c0005t0001g0159 a0001c0005t0001g0160 a0001c0005t0001g0163 a0001c0032t0001g0171 a0002c0002t0001g0133 a0002c0002t0001g0134 a0002c0002t0001g0137 a0002c0002t0001g0152 a0002c0003t0001g0011 a0002c0003t0001g0139 a0002c0003t0001g0140 a0002c0003t0001g0143 a0002c0003t0001g0144 a0002c0015t0001g0048 a0002c0040t0001g0129 a0005c0011t0001g0168 a0005c0011t0001g0169 a0005c0038t0001g0083 a0006c0008t0001g0113 a0012c0018t0001g0126 a0019c0033t0001g0074 a0022c0039t0001g0073	69	180	0.3833	-23	c.846 others(40): Show c.8469-284_8469-262delAAATCTGTTCAGATTTTAGTTAC	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	56/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150650941	TCATGAGG others(16): Show TCATGAGGTAAAGTTATGAATTAA	T T	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0094 a0001c0001t0001g0094	1	180	0.0056	-23	c.592 others(44): Show c.5921+32587_5921+32609delTTAATTCATAACTTTACCTCATG	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46622576	AAACTAGT others(16): Show AAACTAGTACCACTATTTTAGTAC	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0007 a0002c0006t0007	a0002c0006t0007g0192 a0002c0006t0007g0192	1	274	0.0037	-23	c.308 others(42): Show c.308-27611_308-27589delATTTTAGTACAACTAGTACCACT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46718114	CTTCACTT others(16): Show CTTCACTTTGAAGTTAAAAACCAT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0253	1	274	0.0037	-23	c.175 others(42): Show c.1759+2454_1759+2476delACTTTGAAGTTAAAAACCATTTC	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	16/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115221193	AAAAAAAA others(16): Show AAAAAAAAAAAAAAAAAAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	238	0.0042	-23	c.349 others(42): Show c.349+12477_349+12499delATATATTTTTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH2_chrX_115105616_115239096	115221197	AAAAAAAA others(16): Show AAAAAAAAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01433.hp1 HG00735.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0136 a0001c0001t0002g0232 a0001c0001t0001g0136 a0001c0001t0002g0232	2	238	0.0084	-23	c.349 others(42): Show c.349+12473_349+12495delATATATATATTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH3_chr3_197786254_197893436	197827024	AGTGGAAG others(16): Show AGTGGAAGCATCAGGTAAACCATG	A A	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18962.hp2 NA18954.hp1 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0144 a0001c0001t0001g0271 a0001c0001t0001g0144 a0001c0001t0001g0271	2	292	0.0069	-23	c.777 others(36): Show c.777+32_777+54delTGGTGGAAGCATCAGGTAAACCA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197827138	CAGTGGAA others(16): Show CAGTGGAAGCATCAGGTAAACCAT	C C	intron_variant intron_variant	MODIFIER	NA18947.hp2 NA19000.hp2 NA18947.hp2 NA19000.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0018 a0001c0001 a0005c0018	a0001c0001t0001 a0005c0018t0001 a0001c0001t0001 a0005c0018t0001	a0001c0001t0001g0227 a0005c0018t0001g0206 a0001c0001t0001g0227 a0005c0018t0001g0206	2	292	0.0069	-23	c.777 others(38): Show c.777+165_777+187delAACCATAGTGGAAGCATCAGGTA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH3_chr3_197786254_197893436	197827301	ATGGAAGC others(16): Show ATGGAAGCATCAGGTAAACCATAG	A A	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0272 a0001c0001t0008g0272	1	292	0.0034	-23	c.777 others(38): Show c.777+374_777+396delCCATAGTGGAAGCATCAGGTAAA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCH4_chr7_100569011_100591129	100570843	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 NA19003.hp2 HG02976.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0036 a0001c0001t0001g0098 a0001c0001t0001g0036 a0001c0001t0001g0098	2	370	0.0054	-23	c.42 others(34): Show c.4241_*4263delTTTTTTTTTTTTTTTTTTTTTTT	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding		3167		chr7	TogoVar
LRFN2_chr6_40386591_40592364	40523988	TGGGAAGG others(16): Show TGGGAAGGGCAGGGGGAGGGGCTG	T T	intron_variant intron_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0097 a0001c0002t0001g0097	1	228	0.0044	-23	c.-19 others(42): Show c.-19+62930_-19+62952delCAGCCCCTCCCCCTGCCCTTCCC	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRIG1_chr3_66373797_66506022	66402549	TTGCATGG others(16): Show TTGCATGGTGGGAAGGACCCAAGG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00280.hp2 others(148): Show HG00099.hp1 HG00099.hp2 HG00280.hp2 HG00544.hp1 HG00609.hp1 HG00609.hp2 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01099.hp2 HG01167.hp2 HG01192.hp1 HG01192.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01358.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01515.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp1 HG01934.hp2 HG01952.hp1 HG01952.hp2 HG01993.hp1 HG01993.hp2 HG02027.hp1 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp2 HG02132.hp1 HG02135.hp1 HG02135.hp2 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02572.hp1 HG02622.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp2 HG03041.hp2 HG03098.hp2 HG03130.hp2 HG03195.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03579.hp2 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 HG03834.hp1 HG03927.hp1 HG03942.hp2 HG04115.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18943.hp1 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18961.hp1 NA18966.hp2 NA18969.hp2 NA18970.hp1 NA18975.hp2 NA18981.hp1 NA18981.hp2 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp2 NA18991.hp2 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA18994.hp1 NA19000.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp1 NA19058.hp2 NA19064.hp2 NA19065.hp1 NA19074.hp2 NA19077.hp2 NA19085.hp2 NA19240.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0004 others(19): Show a0001 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012 a0014 a0017 a0019 a0020 a0021 a0023 a0024 a0025 a0027 a0028 a0029	a0001c0002 a0001c0007 a0001c0023 others(33): Show a0001c0002 a0001c0007 a0001c0023 a0001c0040 a0003c0005 a0003c0010 a0003c0012 a0003c0031 a0003c0036 a0004c0003 a0004c0053 a0005c0004 a0006c0009 a0006c0019 a0006c0026 a0006c0035 a0007c0008 a0008c0006 a0009c0013 a0009c0015 a0009c0037 a0010c0011 a0011c0016 a0011c0030 a0012c0017 a0014c0043 a0017c0025 a0019c0029 a0020c0027 a0021c0034 a0023c0051 a0024c0055 a0025c0054 a0027c0050 a0028c0049 a0029c0052	a0001c0002t0001 a0001c0002t0031 a0001c0007t0001 others(49): Show a0001c0002t0001 a0001c0002t0031 a0001c0007t0001 a0001c0007t0002 a0001c0023t0002 a0001c0040t0001 a0003c0005t0001 a0003c0005t0003 a0003c0010t0002 a0003c0010t0004 a0003c0012t0001 a0003c0012t0014 a0003c0012t0017 a0003c0012t0018 a0003c0031t0001 a0003c0036t0034 a0004c0003t0001 a0004c0003t0002 a0004c0003t0026 a0004c0003t0038 a0004c0053t0002 a0005c0004t0001 a0005c0004t0006 a0005c0004t0021 a0006c0009t0002 a0006c0009t0004 a0006c0019t0012 a0006c0026t0036 a0006c0035t0033 a0007c0008t0003 a0008c0006t0005 a0008c0006t0020 a0009c0013t0001 a0009c0013t0002 a0009c0013t0004 a0009c0015t0002 a0009c0037t0002 a0010c0011t0001 a0011c0016t0013 a0011c0030t0027 a0012c0017t0002 a0014c0043t0022 a0017c0025t0012 a0019c0029t0001 a0020c0027t0004 a0021c0034t0019 a0023c0051t0002 a0024c0055t0002 a0025c0054t0002 a0027c0050t0023 a0028c0049t0001 a0029c0052t0039	a0001c0002t0001g0049 a0001c0002t0001g0053 a0001c0002t0001g0056 others(147): Show a0001c0002t0001g0049 a0001c0002t0001g0053 a0001c0002t0001g0056 a0001c0002t0001g0061 a0001c0002t0001g0062 a0001c0002t0001g0063 a0001c0002t0001g0065 a0001c0002t0001g0066 a0001c0002t0001g0070 a0001c0002t0001g0071 a0001c0002t0001g0074 a0001c0002t0001g0075 a0001c0002t0001g0076 a0001c0002t0001g0077 a0001c0002t0001g0078 a0001c0002t0001g0079 a0001c0002t0001g0084 a0001c0002t0001g0086 a0001c0002t0001g0092 a0001c0002t0001g0093 a0001c0002t0001g0094 a0001c0002t0001g0104 a0001c0002t0001g0106 a0001c0002t0001g0108 a0001c0002t0001g0111 a0001c0002t0001g0115 a0001c0002t0001g0122 a0001c0002t0001g0133 a0001c0002t0001g0136 a0001c0002t0001g0140 a0001c0002t0001g0146 a0001c0002t0001g0157 a0001c0002t0001g0159 a0001c0002t0001g0167 a0001c0002t0001g0168 a0001c0002t0001g0178 a0001c0002t0001g0189 a0001c0002t0001g0198 a0001c0002t0031g0069 a0001c0007t0001g0116 a0001c0007t0002g0080 a0001c0007t0002g0100 a0001c0007t0002g0125 a0001c0007t0002g0126 a0001c0007t0002g0128 a0001c0007t0002g0129 a0001c0007t0002g0130 a0001c0007t0002g0131 a0001c0007t0002g0132 a0001c0007t0002g0163 a0001c0007t0002g0194 a0001c0023t0002g0060 a0001c0023t0002g0068 a0001c0040t0001g0096 a0003c0005t0001g0026 a0003c0005t0001g0028 a0003c0005t0001g0037 a0003c0005t0001g0039 a0003c0005t0003g0001 a0003c0005t0003g0209 a0003c0005t0003g0210 a0003c0005t0003g0211 a0003c0005t0003g0212 a0003c0005t0003g0216 a0003c0005t0003g0217 a0003c0005t0003g0218 a0003c0005t0003g0241 a0003c0010t0002g0010 a0003c0010t0004g0201 a0003c0010t0004g0229 a0003c0010t0004g0231 a0003c0010t0004g0257 a0003c0010t0004g0258 a0003c0010t0004g0260 a0003c0012t0001g0040 a0003c0012t0014g0233 a0003c0012t0014g0236 a0003c0012t0017g0004 a0003c0012t0018g0008 a0003c0031t0001g0036 a0003c0036t0034g0203 a0004c0003t0001g0151 a0004c0003t0002g0057 a0004c0003t0002g0081 a0004c0003t0002g0088 a0004c0003t0002g0089 a0004c0003t0002g0097 a0004c0003t0002g0098 a0004c0003t0002g0101 a0004c0003t0002g0103 a0004c0003t0002g0105 a0004c0003t0002g0107 a0004c0003t0002g0141 a0004c0003t0002g0153 a0004c0003t0002g0161 a0004c0003t0002g0181 a0004c0003t0002g0193 a0004c0003t0026g0190 a0004c0003t0038g0262 a0004c0053t0002g0197 a0005c0004t0001g0019 a0005c0004t0006g0202 a0005c0004t0021g0006 a0006c0009t0002g0045 a0006c0009t0004g0224 a0006c0009t0004g0225 a0006c0009t0004g0226 a0006c0009t0004g0228 a0006c0009t0004g0232 a0006c0009t0004g0246 a0006c0009t0004g0251 a0006c0019t0012g0244 a0006c0019t0012g0245 a0006c0026t0036g0234 a0006c0035t0033g0207 a0007c0008t0003g0237 a0008c0006t0005g0223 a0008c0006t0005g0230 a0008c0006t0005g0242 a0008c0006t0005g0243 a0008c0006t0020g0005 a0009c0013t0001g0041 a0009c0013t0002g0024 a0009c0013t0002g0042 a0009c0013t0002g0044 a0009c0013t0004g0214 a0009c0015t0002g0032 a0009c0015t0002g0033 a0009c0015t0002g0034 a0009c0037t0002g0018 a0010c0011t0001g0091 a0010c0011t0001g0095 a0011c0016t0013g0204 a0011c0016t0013g0205 a0011c0016t0013g0206 a0011c0030t0027g0021 a0012c0017t0002g0015 a0012c0017t0002g0020 a0012c0017t0002g0023 a0014c0043t0022g0009 a0017c0025t0012g0253 a0019c0029t0001g0022 a0020c0027t0004g0227 a0021c0034t0019g0007 a0023c0051t0002g0054 a0024c0055t0002g0139 a0025c0054t0002g0196 a0027c0050t0023g0082 a0028c0049t0001g0067 a0029c0052t0039g0263	151	264	0.5720	-23	c.116 others(42): Show c.1160+2626_1160+2648delCCTTGGGTCCTTCCCACCATGCA	LRIG1	ENSG00000144749.14	transcript	ENST00000273261.8	protein_coding	9/18			chr3	TogoVar
LRMDA_chr10_75426624_76565168	75590726	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0032 a0001c0002t0005g0032	1	46	0.0217	-23	c.131 others(44): Show c.131+152252_131+152274delTTTTTTTTTTTTTTTTTTTTTTT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76264406	CAAAAAAA others(16): Show CAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp2 HG01081.hp1 others(13): Show HG00639.hp1 HG00639.hp2 HG01081.hp1 HG01258.hp1 HG02083.hp2 HG02145.hp2 HG02572.hp1 HG02818.hp2 HG03195.hp2 HG03209.hp2 HG03471.hp2 NA18906.hp2 NA19030.hp1 NA19240.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(8): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0012 a0001c0001t0013 a0001c0002t0001 a0001c0002t0003 a0001c0002t0007 a0001c0002t0014 a0001c0002t0016 a0002c0004t0003	a0001c0001t0001g0016 a0001c0001t0001g0031 a0001c0001t0004g0011 others(13): Show a0001c0001t0001g0016 a0001c0001t0001g0031 a0001c0001t0004g0011 a0001c0001t0006g0005 a0001c0001t0006g0009 a0001c0001t0012g0021 a0001c0001t0013g0022 a0001c0002t0001g0017 a0001c0002t0001g0038 a0001c0002t0001g0044 a0001c0002t0003g0004 a0001c0002t0003g0013 a0001c0002t0007g0007 a0001c0002t0014g0041 a0001c0002t0016g0043 a0002c0004t0003g0028	16	46	0.3478	-23	c.517 others(42): Show c.517-59966_517-59944delAAAAAAAAAAAAAAAAAAAAAAA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP12_chr8_104484236_104594258	104520569	TCAAGGGT others(16): Show TCAAGGGTGGTACCCAGAAATAAA	T T	intron_variant intron_variant	MODIFIER	NA19072.hp1 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0068 a0001c0001t0003g0068	1	318	0.0031	-23	c.136 others(42): Show c.136+11315_136+11337delTTTATTTCTGGGTACCACCCTTG	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	2/6			chr8	TogoVar
LRP1B_chr2_140226423_142136016	140228321	TATATATA others(16): Show TATATATATATTCCATATATATAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0009 a0001c0015t0009	a0001c0015t0009g0017 a0001c0015t0009g0017	1	28	0.0357	-23	c.48 others(34): Show c.4842_*4864delTTATATATATGGAATATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding		3101		chr2	TogoVar
LRP1B_chr2_140226423_142136016	140256449	CTTTTTTT others(16): Show CTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03516.hp1 HG02630.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0017 a0001c0001 a0001c0017	a0001c0001t0006 a0001c0017t0006 a0001c0001t0006 a0001c0017t0006	a0001c0001t0006g0024 a0001c0017t0006g0015 a0001c0001t0006g0024 a0001c0017t0006g0015	2	28	0.0714	-23	c.132 others(44): Show c.13248-9310_13248-9288delAAAAAAAAAAAAAAAAAAAAAAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	86/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140513633	GAATATCT others(16): Show GAATATCTCCAATTTCATATTACT	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp2 HG02451.hp1 others(14): Show HG01884.hp1 HG01884.hp2 HG02451.hp1 HG02486.hp1 HG02630.hp1 HG02630.hp2 HG02723.hp1 HG02723.hp2 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG03225.hp2 HG03516.hp1 NA18522.hp1 NA18522.hp2 NA19240.hp1 NA19240.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0001c0002 a0001c0005 others(14): Show a0001c0001 a0001c0002 a0001c0005 a0001c0010 a0001c0011 a0001c0013 a0001c0015 a0001c0016 a0001c0017 a0001c0018 a0001c0020 a0001c0027 a0001c0028 a0002c0004 a0002c0006 a0003c0021 a0005c0003	a0001c0001t0006 a0001c0002t0010 a0001c0005t0008 others(14): Show a0001c0001t0006 a0001c0002t0010 a0001c0005t0008 a0001c0010t0011 a0001c0011t0001 a0001c0013t0002 a0001c0015t0009 a0001c0016t0001 a0001c0017t0006 a0001c0018t0002 a0001c0020t0007 a0001c0027t0001 a0001c0028t0002 a0002c0004t0004 a0002c0006t0002 a0003c0021t0001 a0005c0003t0002	a0001c0001t0006g0024 a0001c0002t0010g0022 a0001c0005t0008g0010 others(14): Show a0001c0001t0006g0024 a0001c0002t0010g0022 a0001c0005t0008g0010 a0001c0010t0011g0028 a0001c0011t0001g0014 a0001c0013t0002g0012 a0001c0015t0009g0017 a0001c0016t0001g0011 a0001c0017t0006g0015 a0001c0018t0002g0013 a0001c0020t0007g0019 a0001c0027t0001g0021 a0001c0028t0002g0020 a0002c0004t0004g0006 a0002c0006t0002g0023 a0003c0021t0001g0026 a0005c0003t0002g0027	17	28	0.6071	-23	c.826 others(41): Show c.8269+997_8269+1019delAGTAATATGAAATTGGAGATATT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	51/90			chr2	TogoVar
LRP4_chr11_46851717_46923550	46881666	GTGCCACC others(16): Show GTGCCACCCTTACCTTCCTCTTAC	G G	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02896.hp2 HG03098.hp1 HG02280.hp1 HG02896.hp2 HG03098.hp1	a0011 a0012 a0011 a0012	a0011c0014 a0012c0019 a0011c0014 a0012c0019	a0011c0014t0010 a0012c0019t0002 a0011c0014t0010 a0012c0019t0002	a0011c0014t0010g0133 a0011c0014t0010g0134 a0012c0019t0002g0096 a0011c0014t0010g0133 a0011c0014t0010g0134 a0012c0019t0002g0096	3	276	0.0109	-23	c.281 others(38): Show c.2814+13_2814+35delGTAAGAGGAAGGTAAGGGTGGCA	LRP4	ENSG00000134569.10	transcript	ENST00000378623.6	protein_coding	20/37			chr11	TogoVar
LRPAP1_chr4_3498612_3537422	3536480	CCAACCCC others(16): Show CCAACCCCTTCCCAGCTCCCAGCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0031 a0001c0001t0018g0031	1	420	0.0024	-23	c.-40 others(34): Show c.-4091_-4069delTGCTGGGAGCTGGGAAGGGGTTG	LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding		4059		chr4	TogoVar

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