Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11B_chr1_52721453_52832336	52817795	ATATATAT others(16): Show ATATATATATATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0237 a0001c0002t0003g0237	1	352	0.0028	-23	c.204 others(42): Show c.2044+1168_2044+1190delATATATATATATATATATATTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817799	ATATATAT others(16): Show ATATATATATATATATATTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01433.hp1 NA19063.hp1 HG01106.hp2 HG01433.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0002t0031 a0001c0001t0006 a0001c0002t0031	a0001c0001t0006g0180 a0001c0002t0031g0105 a0001c0002t0031g0136 a0001c0001t0006g0180 a0001c0002t0031g0105 a0001c0002t0031g0136	3	352	0.0085	-23	c.204 others(42): Show c.2044+1172_2044+1194delATATATATATATATATTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817801	ATATATAT others(16): Show ATATATATATATATATTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0230 a0001c0002t0003g0230	1	352	0.0028	-23	c.204 others(42): Show c.2044+1174_2044+1196delATATATATATATATTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817805	ATATATAT others(16): Show ATATATATATATTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0155 a0001c0001t0011g0155	1	352	0.0028	-23	c.204 others(42): Show c.2044+1178_2044+1200delATATATATATTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817807	ATATATAT others(16): Show ATATATATATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0156 a0001c0001t0011g0156	1	352	0.0028	-23	c.204 others(42): Show c.2044+1180_2044+1202delATATATATTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817811	ATATATTT others(16): Show ATATATTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	352	0.0028	-23	c.204 others(42): Show c.2044+1184_2044+1206delATATTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(16): Show ATATTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	352	0.0028	-23	c.204 others(42): Show c.2044+1186_2044+1208delATTTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(16): Show ATTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0127 a0001c0001t0019g0127	1	352	0.0028	-23	c.204 others(42): Show c.2044+1204_2044+1226delTTTTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4112074	ATATATAT others(16): Show ATATATATATATATATATATGTTT	A A	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0002 a0006c0008t0002	a0006c0008t0002g0243 a0006c0008t0002g0243	1	296	0.0034	-23	c.106 others(40): Show c.1066+512_1066+534delAAACATATATATATATATATATA		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar