Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LOC647264_chr13_63827361_63838053	63832880	AGAGCCAT others(17): Show AGAGCCATAGCCACAGCCATAGCTG	A A	disruptive_inframe_deletion disruptive_inframe_deletion	MODERATE	HG01109.hp1 HG01175.hp2 HG01255.hp2 others(11): Show HG01109.hp1 HG01175.hp2 HG01255.hp2 HG02055.hp1 HG02109.hp1 HG02258.hp2 HG02280.hp1 HG02615.hp2 HG03098.hp1 HG03139.hp1 HG03453.hp1 HG03453.hp2 HG03540.hp2 NA18522.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0006 a0002c0002t0003 a0002c0002t0006	a0002c0002t0003g0000 a0002c0002t0006g0000 a0002c0002t0003g0000 a0002c0002t0006g0000	14	442	0.0317	-24	c.90_ others(30): Show c.90_113delCAGCTATGGCTGTGGCTATGGCTC	p.Ser others(11): Show p.Ser31_Ser38del	LOC647264	ENSG00000285566.2	transcript	ENST00000648713.2	protein_coding	1/1	173/693	90/330	30/109			chr13	TogoVar
LONRF1_chr8_12716906_12760526	12758793	CTCTCTCT others(17): Show CTCTCTCTCTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0228 a0001c0001t0001g0228	1	404	0.0025	-24	c.-33 others(35): Show c.-3397_-3374delTATATATATATAGAGAGAGAGAGA		LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding					3268		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758795	CTCTCTCT others(17): Show CTCTCTCTCTCTATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 HG01978.hp2 HG02004.hp1 others(2): Show HG01952.hp1 HG01978.hp2 HG02004.hp1 HG02015.hp2 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0183 a0001c0001t0001g0210 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0183 a0001c0001t0001g0210 a0001c0001t0001g0215	5	404	0.0124	-24	c.-33 others(35): Show c.-3399_-3376delTATATATATATATAGAGAGAGAGA		LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding					3270		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758797	CTCTCTCT others(17): Show CTCTCTCTCTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01109.hp1 NA18951.hp1 NA18986.hp1 HG01109.hp1 NA18951.hp1 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0195 a0001c0001t0001g0217 a0001c0001t0001g0041 a0001c0001t0001g0195 a0001c0001t0001g0217	3	404	0.0074	-24	c.-34 others(35): Show c.-3401_-3378delTATATATATATATATAGAGAGAGA		LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding					3272		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758799	CTCTCTCT others(17): Show CTCTCTCTATATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG00738.hp1 HG00621.hp2 HG00738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0220 a0001c0001t0001g0221	2	404	0.0050	-24	c.-34 others(35): Show c.-3403_-3380delTATATATATATATATATAGAGAGA		LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding					3274		chr8	TogoVar
LONRF3_chrX_118969618_119023355	119000775	TTCTCTCT others(17): Show TTCTCTCTCTCTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02280.hp1 HG02738.hp1 others(16): Show HG02083.hp1 HG02280.hp1 HG02738.hp1 HG02886.hp2 HG03540.hp1 NA18946.hp2 NA18950.hp2 NA18970.hp1 NA18975.hp1 NA18991.hp1 NA18994.hp1 NA19002.hp1 NA19060.hp1 NA19064.hp1 NA19068.hp1 NA19070.hp1 NA19081.hp1 NA19083.hp1 NA19085.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0001c0005 a0004c0008	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0004t0001 a0001c0005t0001 a0004c0008t0001	a0001c0001t0001g0002 a0001c0001t0001g0030 a0001c0001t0001g0152 others(13): Show a0001c0001t0001g0002 a0001c0001t0001g0030 a0001c0001t0001g0152 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0233 a0001c0001t0001g0261 a0001c0001t0002g0113 a0001c0001t0002g0114 a0001c0001t0002g0115 a0001c0002t0001g0141 a0001c0002t0001g0144 a0001c0004t0001g0101 a0001c0004t0001g0153 a0001c0005t0001g0081 a0004c0008t0001g0256	19	309	0.0615	-24	c.141 others(43): Show c.1416-5305_1416-5282delTCTCTCTCTCTCTCTCTCTCTCTC		LONRF3	ENSG00000175556.17	transcript	ENST00000371628.8	protein_coding	5/10					INFO_REALIGN_3_PRIME	chrX	TogoVar
LOXL1_chr15_73921462_73957136	73950533	ATGTGTGA others(17): Show ATGTGTGACCAGGATCAAGGCTCAG	A A	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0085 a0003c0003t0004g0085	1	448	0.0022	-24	c.171 others(41): Show c.1718+976_1718+999delAGGCTCAGTGTGTGACCAGGATCA		LOXL1	ENSG00000129038.16	transcript	ENST00000261921.8	protein_coding	6/6					INFO_REALIGN_3_PRIME	chr15	TogoVar
LOXL1_chr15_73921462_73957136	73950650	CCAGTGTG others(17): Show CCAGTGTGTAGCCAGGCTCAGGGCT	C C	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01934.hp1 HG02273.hp2 others(7): Show HG01261.hp1 HG01934.hp1 HG02273.hp2 HG02293.hp1 HG02300.hp1 NA18956.hp2 NA18960.hp2 NA18971.hp2 NA18978.hp1 NA19007.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 others(1): Show a0001c0004t0001 a0001c0004t0002 a0001c0004t0003 a0001c0004t0004	a0001c0004t0001g0050 a0001c0004t0001g0325 a0001c0004t0002g0015 others(4): Show a0001c0004t0001g0050 a0001c0004t0001g0325 a0001c0004t0002g0015 a0001c0004t0002g0309 a0001c0004t0002g0333 a0001c0004t0003g0015 a0001c0004t0004g0051	10	448	0.0223	-24	c.171 others(43): Show c.1718+1085_1718+1108delAGCCAGGCTCAGGGCTCAGTGTGT		LOXL1	ENSG00000129038.16	transcript	ENST00000261921.8	protein_coding	6/6					INFO_REALIGN_3_PRIME	chr15	TogoVar
LOXL2_chr8_23291897_23409120	23318424	AGCACACA others(17): Show AGCACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02922.hp1 NA19043.hp2 HG02258.hp2 HG02922.hp1 NA19043.hp2	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0001 a0002c0010t0007 a0002c0010t0001 a0002c0010t0007	a0002c0010t0001g0002 a0002c0010t0001g0332 a0002c0010t0007g0340 a0002c0010t0001g0002 a0002c0010t0001g0332 a0002c0010t0007g0340	3	348	0.0086	-24	c.147 others(43): Show c.1471-1334_1471-1311delGTGTGTGTGTGTGTGTGTGTGTGC		LOXL2	ENSG00000134013.16	transcript	ENST00000389131.8	protein_coding	8/13						chr8	TogoVar
LPAR1_chr9_110868263_111043470	110892844	GGCAGGCA others(17): Show GGCAGGCAGGCAGGCAGGCAGGCAT	G G	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0205 a0001c0001t0023g0205	1	302	0.0033	-24	c.794 others(43): Show c.794-17146_794-17123delATGCCTGCCTGCCTGCCTGCCTGC		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	5/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	110950119	ATCATATT others(17): Show ATCATATTTAAATATGACATGAATG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00597.hp2 HG00609.hp2 others(86): Show HG00438.hp1 HG00597.hp2 HG00609.hp2 HG00673.hp2 HG01192.hp1 HG01255.hp2 HG01257.hp2 HG01261.hp2 HG01433.hp2 HG01516.hp1 HG01517.hp1 HG01934.hp1 HG01943.hp1 HG01993.hp1 HG01993.hp2 HG02083.hp1 HG02135.hp1 HG02145.hp2 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp2 HG02523.hp2 HG02559.hp1 HG02622.hp1 HG02698.hp1 HG02738.hp1 HG02809.hp2 HG02965.hp1 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp2 HG03516.hp2 HG03927.hp2 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp2 NA18612.hp1 NA18747.hp2 NA18906.hp1 NA18940.hp2 NA18944.hp1 NA18947.hp1 NA18950.hp1 NA18952.hp1 NA18955.hp1 NA18955.hp2 NA18957.hp1 NA18959.hp1 NA18961.hp1 NA18965.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18971.hp2 NA18972.hp2 NA18977.hp2 NA18980.hp2 NA18981.hp2 NA18982.hp1 NA18987.hp1 NA19001.hp2 NA19002.hp2 NA19010.hp2 NA19043.hp1 NA19058.hp2 NA19060.hp2 NA19062.hp2 NA19065.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19079.hp1 NA19081.hp2 NA19083.hp2 NA19091.hp1 NA19091.hp2 NA20129.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0004 a0001c0001 a0001c0002 a0002c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(12): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0021 a0001c0001t0025 a0001c0001t0027 a0001c0002t0003 a0002c0004t0001	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0044 others(86): Show a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0044 a0001c0001t0001g0057 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0072 a0001c0001t0001g0074 a0001c0001t0001g0085 a0001c0001t0001g0087 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0125 a0001c0001t0001g0131 a0001c0001t0001g0156 a0001c0001t0001g0158 a0001c0001t0001g0168 a0001c0001t0001g0171 a0001c0001t0001g0175 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0194 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0200 a0001c0001t0001g0202 a0001c0001t0001g0212 a0001c0001t0001g0221 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0268 a0001c0001t0001g0271 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0288 a0001c0001t0002g0048 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0073 a0001c0001t0002g0145 a0001c0001t0002g0165 a0001c0001t0002g0219 a0001c0001t0002g0220 a0001c0001t0002g0224 a0001c0001t0002g0225 a0001c0001t0002g0260 a0001c0001t0004g0103 a0001c0001t0004g0134 a0001c0001t0004g0135 a0001c0001t0004g0137 a0001c0001t0004g0141 a0001c0001t0004g0142 a0001c0001t0004g0247 a0001c0001t0004g0276 a0001c0001t0004g0277 a0001c0001t0005g0118 a0001c0001t0006g0189 a0001c0001t0007g0213 a0001c0001t0007g0214 a0001c0001t0008g0005 a0001c0001t0008g0008 a0001c0001t0008g0174 a0001c0001t0008g0245 a0001c0001t0010g0252 a0001c0001t0011g0297 a0001c0001t0011g0299 a0001c0001t0011g0300 a0001c0001t0011g0301 a0001c0001t0013g0181 a0001c0001t0021g0056 a0001c0001t0025g0256 a0001c0001t0027g0071 a0001c0002t0003g0052 a0001c0002t0003g0066 a0001c0002t0003g0092 a0001c0002t0003g0100 a0002c0004t0001g0157	89	302	0.2947	-24	c.46- others(39): Show c.46-7975_46-7952delCATTCATGTCATATTTAAATATGA		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	4/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	110977806	AGGAGGGA others(17): Show AGGAGGGAGGGAGGGCGGGAGGGAG	A A	intron_variant intron_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	302	0.0033	-24	c.-18 others(43): Show c.-181-4272_-181-4249delCTCCCTCCCGCCCTCCCTCCCTCC		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	110977814	GGGAGGGC others(17): Show GGGAGGGCGGGAGGGAGGGAGGGAA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	302	0.0033	-24	c.-18 others(43): Show c.-181-4280_-181-4257delTTCCCTCCCTCCCTCCCGCCCTCC		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	110977818	GGGCGGGA others(17): Show GGGCGGGAGGGAGGGAGGGAAGGAA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02280.hp1 HG02723.hp2 others(4): Show HG02145.hp1 HG02280.hp1 HG02723.hp2 HG02735.hp1 NA18952.hp2 NA18974.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0043 a0001c0001t0002g0055 a0001c0001t0002g0286 others(4): Show a0001c0001t0002g0043 a0001c0001t0002g0055 a0001c0001t0002g0286 a0001c0001t0006g0009 a0001c0001t0006g0014 a0001c0001t0006g0018 a0001c0001t0006g0189	7	302	0.0232	-24	c.-18 others(43): Show c.-181-4284_-181-4261delTTCCTTCCCTCCCTCCCTCCCGCC		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5						chr9	TogoVar
LPAR1_chr9_110868263_111043470	111009998	AATATATA others(17): Show AATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02055.hp1 HG02896.hp2 others(6): Show HG00438.hp2 HG02055.hp1 HG02896.hp2 HG02976.hp1 HG03579.hp1 HG03579.hp2 NA18522.hp1 NA18747.hp1 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0024	a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0186 others(6): Show a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0186 a0001c0001t0001g0241 a0001c0001t0002g0250 a0001c0001t0004g0001 a0001c0001t0004g0247 a0001c0001t0005g0030 a0001c0001t0024g0002	9	302	0.0298	-24	c.-18 others(45): Show c.-182+26100_-182+26123delATATATATATATATATATATATAT		LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5						chr9	TogoVar
LPA_chr6_160526482_160669275	160584170	TTTCTTCT others(17): Show TTTCTTCTTCTTCTTCTTCTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00609.hp2 HG03834.hp2 HG00408.hp1 HG00609.hp2 HG03834.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0089 a0004c0004t0001g0109 a0004c0004t0001g0110 a0004c0004t0001g0089 a0004c0004t0001g0109 a0004c0004t0001g0110	3	148	0.0203	-24	c.428 others(41): Show c.4289+852_4289+875delGAAGAAGAAGAAGAAGAAGAAGAA		LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	26/38						chr6	TogoVar
LPA_chr6_160526482_160669275	160584216	TTCTTCTT others(17): Show TTCTTCTTCTTCTTCTTCTTCTTCC	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 NA18990.hp2 HG00609.hp1 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0037 a0001c0001t0002g0040 a0001c0001t0002g0037 a0001c0001t0002g0040	2	148	0.0135	-24	c.428 others(41): Show c.4289+806_4289+829delGGAAGAAGAAGAAGAAGAAGAAGA		LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	26/38						chr6	TogoVar
LPGAT1_chr1_211738457_211835763	211793402	ATTATTTA others(17): Show ATTATTTATTTATTTATTTATTTAT	A A	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0236 a0001c0001t0006g0236	1	332	0.0030	-24	c.239 others(39): Show c.239-236_239-213delATAAATAAATAAATAAATAAATAA		LPGAT1	ENSG00000123684.13	transcript	ENST00000366997.9	protein_coding	2/7						chr1	TogoVar
LPIN1_chr2_11741632_11832409	11759133	TTTTCTTT others(17): Show TTTTCTTTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0034 a0001c0001t0026g0034	1	278	0.0036	-24	c.-9- others(39): Show c.-9-6364_-9-6341delCTTTCTTTCTTTCTTTCTTTCTTT		LPIN1	ENSG00000134324.12	transcript	ENST00000674199.1	protein_coding	1/20					INFO_REALIGN_3_PRIME	chr2	TogoVar
LPO_chr17_58233584_58273518	58254128	GATAGATA others(17): Show GATAGATATATAGATATATAGATAT	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG06807.hp1 HG02451.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0027 a0001c0001t0001g0027	2	328	0.0061	-24	c.110 others(41): Show c.1106-675_1106-652delTATAGATATATAGATATATAGATA		LPO	ENSG00000167419.11	transcript	ENST00000262290.9	protein_coding	8/12					INFO_REALIGN_3_PRIME	chr17	TogoVar
LPP_chr3_188149157_188895671	188276671	CTCTCTCT others(17): Show CTCTCTCTCTCTCTCTCTCTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00673.hp2 HG01081.hp1 others(13): Show HG00639.hp2 HG00673.hp2 HG01081.hp1 HG01167.hp1 HG01256.hp1 HG01256.hp2 HG01361.hp1 HG02622.hp2 HG02738.hp2 HG03239.hp1 HG03239.hp2 HG03834.hp1 NA18522.hp2 NA19030.hp2 NA20752.hp1 NA20752.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0005 others(4): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0003 a0002c0004 a0004c0010	a0001c0001t0005 a0001c0001t0008 a0001c0001t0051 others(11): Show a0001c0001t0005 a0001c0001t0008 a0001c0001t0051 a0001c0001t0057 a0001c0002t0001 a0001c0002t0047 a0001c0005t0031 a0001c0005t0042 a0001c0006t0032 a0001c0006t0064 a0001c0006t0066 a0002c0003t0052 a0002c0004t0068 a0004c0010t0035	a0001c0001t0005g0024 a0001c0001t0005g0032 a0001c0001t0008g0065 others(13): Show a0001c0001t0005g0024 a0001c0001t0005g0032 a0001c0001t0008g0065 a0001c0001t0051g0019 a0001c0001t0057g0006 a0001c0002t0001g0029 a0001c0002t0001g0076 a0001c0002t0047g0033 a0001c0005t0031g0003 a0001c0005t0042g0037 a0001c0006t0032g0005 a0001c0006t0064g0007 a0001c0006t0066g0021 a0002c0003t0052g0014 a0002c0004t0068g0020 a0004c0010t0035g0060	16	76	0.2105	-24	c.-67 others(43): Show c.-67+51168_-67+51191delTTCTCTCTCTCTCTCTCTCTCTCT		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	2/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188462563	TATATATA others(17): Show TATATATATATATATATATATATGC	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG03834.hp1 HG00673.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0057 a0001c0002t0001 a0001c0001t0057 a0001c0002t0001	a0001c0001t0057g0006 a0001c0002t0001g0029 a0001c0001t0057g0006 a0001c0002t0001g0029	2	76	0.0263	-24	c.194 others(43): Show c.194-22026_194-22003delATATATATATATATATATATGCAT		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188462566	ATATATAT others(17): Show ATATATATATATATATATATGCATG	A A	intron_variant intron_variant	MODIFIER	HG02074.hp2 NA19043.hp1 HG02074.hp2 NA19043.hp1	a0001 a0004 a0001 a0004	a0001c0002 a0004c0017 a0001c0002 a0004c0017	a0001c0002t0024 a0004c0017t0044 a0001c0002t0024 a0004c0017t0044	a0001c0002t0024g0036 a0004c0017t0044g0043 a0001c0002t0024g0036 a0004c0017t0044g0043	2	76	0.0263	-24	c.194 others(43): Show c.194-22024_194-22001delATATATATATATATATATGCATGT		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188462570	ATATATAT others(17): Show ATATATATATATATATGCATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG03195.hp1 NA19030.hp1 HG03195.hp1 NA19030.hp1	a0002 a0002	a0002c0003 a0002c0015 a0002c0003 a0002c0015	a0002c0003t0023 a0002c0015t0037 a0002c0003t0023 a0002c0015t0037	a0002c0003t0023g0001 a0002c0015t0037g0051 a0002c0003t0023g0001 a0002c0015t0037g0051	2	76	0.0263	-24	c.194 others(43): Show c.194-22020_194-21997delATATATATATATATGCATGTGTGT		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188466804	AACATATA others(17): Show AACATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0056 a0002c0003t0056	a0002c0003t0056g0016 a0002c0003t0056g0016	1	76	0.0132	-24	c.194 others(43): Show c.194-17786_194-17763delCATATATATATATATATATATATA		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188524897	GTCCTTCC others(17): Show GTCCTTCCTTCCTTCCTTCCTTCCT	G G	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG03704.hp1 HG01361.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0017 a0001c0001t0005 a0001c0001t0017	a0001c0001t0005g0032 a0001c0001t0017g0064 a0001c0001t0005g0032 a0001c0001t0017g0064	2	76	0.0263	-24	c.429 others(39): Show c.429+139_429+162delTCCTTCCTTCCTTCCTTCCTTCCT		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188607370	GATATATA others(17): Show GATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0024 a0001c0002t0024	a0001c0002t0024g0036 a0001c0002t0024g0036	1	76	0.0132	-24	c.430 others(41): Show c.430-1767_430-1744delTATATATATATATATATATATATA		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188613244	ATATATCT others(17): Show ATATATCTATATCTATACCTATATC	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03195.hp2 HG02630.hp2 HG03195.hp2	a0002 a0003 a0002 a0003	a0002c0004 a0003c0009 a0002c0004 a0003c0009	a0002c0004t0003 a0003c0009t0015 a0002c0004t0003 a0003c0009t0015	a0002c0004t0003g0050 a0003c0009t0015g0066 a0002c0004t0003g0050 a0003c0009t0015g0066	2	76	0.0263	-24	c.111 others(43): Show c.1113+3417_1113+3440delCCTATATCTATATCTATATCTATA		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	7/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188755809	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03098.hp1 HG02622.hp1 HG03098.hp1	a0002 a0002	a0002c0003 a0002c0004 a0002c0003 a0002c0004	a0002c0003t0009 a0002c0004t0039 a0002c0003t0009 a0002c0004t0039	a0002c0003t0009g0070 a0002c0004t0039g0053 a0002c0003t0009g0070 a0002c0004t0039g0053	2	76	0.0263	-24	c.124 others(43): Show c.1241-4271_1241-4248delAAAAAAAAAAAAAAAAAAAAAAAA		LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	8/11					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150489315	TATATAAA others(17): Show TATATAAAATATATTACATATAAGA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02897.hp2 HG02922.hp1 others(1): Show HG02055.hp2 HG02897.hp2 HG02922.hp1 HG03540.hp1	a0002 a0012 a0002 a0012	a0002c0002 a0002c0022 a0012c0018 a0002c0002 a0002c0022 a0012c0018	a0002c0002t0003 a0002c0022t0003 a0012c0018t0001 a0002c0002t0003 a0002c0022t0003 a0012c0018t0001	a0002c0002t0003g0135 a0002c0002t0003g0138 a0002c0022t0003g0114 others(1): Show a0002c0002t0003g0135 a0002c0002t0003g0138 a0002c0022t0003g0114 a0012c0018t0001g0126	4	180	0.0222	-24	c.644 others(43): Show c.6449-1505_6449-1482delTCTTATATGTAATATATTTTATAT		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	41/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150489379	CATATAAG others(17): Show CATATAAGAATATAAAATATATTAT	C C	intron_variant intron_variant	MODIFIER	HG03041.hp1 NA19240.hp1 HG03041.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0107 a0001c0001t0002g0057 a0001c0001t0002g0107	2	180	0.0111	-24	c.644 others(43): Show c.6448+1515_6448+1538delATAATATATTTTATATTCTTATAT		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	41/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150489441	TAATATAT others(17): Show TAATATATTATATATAAGAATATAA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02922.hp2 HG03139.hp1 others(4): Show HG02055.hp1 HG02922.hp2 HG03139.hp1 HG03209.hp1 NA18906.hp1 NA19240.hp2 NA20129.hp1	a0001 a0023 a0001 a0023	a0001c0001 a0001c0037 a0023c0041 a0001c0001 a0001c0037 a0023c0041	a0001c0001t0002 a0001c0037t0003 a0023c0041t0003 a0001c0001t0002 a0001c0037t0003 a0023c0041t0003	a0001c0001t0002g0170 a0001c0001t0002g0176 a0001c0001t0002g0177 others(4): Show a0001c0001t0002g0170 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0037t0003g0175 a0023c0041t0003g0173	7	180	0.0389	-24	c.644 others(43): Show c.6448+1453_6448+1476delTTATATTCTTATATATAATATATT		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	41/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150489589	TTATATAA others(17): Show TTATATAAGAATATATAATATATAA	T T	intron_variant intron_variant	MODIFIER	HG03491.hp2 NA18939.hp2 HG03491.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0005t0001 a0001c0001t0001 a0001c0005t0001	a0001c0001t0001g0117 a0001c0005t0001g0159 a0001c0001t0001g0117 a0001c0005t0001g0159	2	180	0.0111	-24	c.644 others(43): Show c.6448+1305_6448+1328delTTATATATTATATATTCTTATATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	41/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150639811	GTGTGTGT others(17): Show GTGTGTGTGTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG02074.hp1 HG02129.hp2 others(5): Show HG00597.hp1 HG02074.hp1 HG02129.hp2 HG02132.hp2 NA18941.hp2 NA18959.hp1 NA18962.hp2 NA19062.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0012 a0001c0001 a0003c0012	a0001c0001t0001 a0003c0012t0003 a0001c0001t0001 a0003c0012t0003	a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0077 others(5): Show a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0090 a0001c0001t0001g0109 a0001c0001t0001g0111 a0003c0012t0003g0078	8	180	0.0444	-24	c.592 others(45): Show c.5922-40704_5922-40681delTATATATATATATATACACACACA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150652154	CTATACAA others(17): Show CTATACAAGTTAGGGGAAAATACCT	C C	intron_variant intron_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0002 a0002	a0002c0040 a0002c0040	a0002c0040t0001 a0002c0040t0001	a0002c0040t0001g0129 a0002c0040t0001g0129	1	180	0.0056	-24	c.592 others(45): Show c.5921+31373_5921+31396delAGGTATTTTCCCCTAACTTGTATA		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRBA_chr4_150259435_151020284	150658007	CACTTGCC others(17): Show CACTTGCCTAGTGTGTAATTACACT	C C	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0011 a0002c0003t0001g0011	1	180	0.0056	-24	c.592 others(45): Show c.5921+25520_5921+25543delAGTGTAATTACACACTAGGCAAGT		LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56						chr4	TogoVar
LRCH1_chr13_46548170_46749898	46567077	GAACAGTT others(17): Show GAACAGTTTACTGATATTTTCTATA	G G	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0168 a0001c0001t0002g0168	1	274	0.0037	-24	c.307 others(43): Show c.307+13393_307+13416delTCTATAAACAGTTTACTGATATTT		LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19					INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46659163	GATTTATT others(17): Show GATTTATTTATTTATTTATTTATTT	G G	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG03130.hp1 HG03225.hp2 others(1): Show HG01074.hp2 HG03130.hp1 HG03225.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0003 a0001c0001t0007 a0001c0001t0012 others(1): Show a0001c0001t0003 a0001c0001t0007 a0001c0001t0012 a0001c0004t0008	a0001c0001t0003g0099 a0001c0001t0007g0173 a0001c0001t0012g0167 others(1): Show a0001c0001t0003g0099 a0001c0001t0007g0173 a0001c0001t0012g0167 a0001c0004t0008g0172	4	274	0.0146	-24	c.452 others(41): Show c.452+8838_452+8861delTATTTATTTATTTATTTATTTATT		LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	2/19					INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115221194	AAAAAAAA others(17): Show AAAAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02615.hp2 NA18969.hp2 others(8): Show HG00621.hp1 HG02615.hp2 NA18969.hp2 NA18983.hp1 NA18986.hp1 NA18988.hp1 NA19004.hp1 NA19030.hp2 NA19056.hp1 NA19057.hp2 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0016 a0001c0001t0001g0053 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0016 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0211	11	238	0.0462	-24	c.349 others(43): Show c.349+12475_349+12498delATATATATTTTTTTTTTTTTTTTT		LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20						chrX	TogoVar
LRCH3_chr3_197786254_197893436	197813510	ATTTTTTT others(17): Show ATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01975.hp1 HG02055.hp2 others(9): Show HG01884.hp1 HG01975.hp1 HG02055.hp2 HG02559.hp2 HG02615.hp1 HG02630.hp2 HG02717.hp2 HG02723.hp2 HG02922.hp1 HG03225.hp2 HG03453.hp2 NA20300.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0004c0010	a0001c0001t0002 a0001c0001t0005 a0001c0001t0021 others(7): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0021 a0001c0001t0023 a0001c0001t0056 a0001c0002t0001 a0001c0004t0016 a0002c0003t0002 a0002c0003t0039 a0004c0010t0070	a0001c0001t0002g0042 a0001c0001t0005g0036 a0001c0001t0021g0039 others(9): Show a0001c0001t0002g0042 a0001c0001t0005g0036 a0001c0001t0021g0039 a0001c0001t0023g0044 a0001c0001t0056g0041 a0001c0002t0001g0035 a0001c0004t0016g0038 a0001c0004t0016g0040 a0001c0004t0016g0045 a0002c0003t0002g0043 a0002c0003t0039g0037 a0004c0010t0070g0049	12	292	0.0411	-24	c.263 others(41): Show c.263-1383_263-1360delTTTTTTTTTTTTTTTTTTTTTTTT		LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCOL1_chr12_132598151_132615582	132607971	TTCTGTCT others(17): Show TTCTGTCTCCCTGTCTCTGTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	390	0.0026	-24	c.-13 others(41): Show c.-13-1731_-13-1708delGAGAGACAGAGACAGGGAGACAGA		LRCOL1	ENSG00000204583.10	transcript	ENST00000376608.9	protein_coding	1/5						chr12	TogoVar
LRFN5_chr14_41601876_41909549	41670256	GATATATA others(17): Show GATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02965.hp2 HG03098.hp2 others(1): Show HG02451.hp1 HG02965.hp2 HG03098.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0077 a0001c0001t0002g0081 a0001c0001t0002g0086 others(1): Show a0001c0001t0002g0077 a0001c0001t0002g0081 a0001c0001t0002g0086 a0001c0002t0002g0078	4	280	0.0143	-24	c.-19 others(45): Show c.-197+61720_-197+61743delTATATATATATATATATATATATA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41670282	TATATATA others(17): Show TATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02109.hp1 HG01261.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0004 a0001c0001t0004 a0001c0002t0004	a0001c0001t0004g0223 a0001c0002t0004g0224 a0001c0001t0004g0223 a0001c0002t0004g0224	2	280	0.0071	-24	c.-19 others(45): Show c.-197+61722_-197+61745delTATATATATATATATATATATACA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41759478	CACACACA others(17): Show CACACACACACACACACACACAGAG	C C	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0102 a0001c0002t0001g0102	1	280	0.0036	-24	c.-19 others(43): Show c.-196-7374_-196-7351delCACACACACACACACACACAGAGA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41781558	GAGAAAGA others(17): Show GAGAAAGAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02965.hp2 HG01884.hp1 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0020 a0001c0001t0002 a0001c0001t0020	a0001c0001t0002g0086 a0001c0001t0020g0216 a0001c0001t0002g0086 a0001c0001t0020g0216	2	280	0.0071	-24	c.-21 others(43): Show c.-21+14565_-21+14588delAAGAAAGAAAGAAAGAAAGAAAGA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41781600	GAAAGAAA others(17): Show GAAAGAAAGAAAGAAAGAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 NA20300.hp1 HG02145.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0012 a0001c0001t0011 a0001c0001t0012	a0001c0001t0011g0115 a0001c0001t0012g0114 a0001c0001t0011g0115 a0001c0001t0012g0114	2	280	0.0071	-24	c.-21 others(43): Show c.-21+14573_-21+14596delAAGAAAGAAAGAAAGAGAAAGAAA		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41808529	TGGAGGAA others(17): Show TGGAGGAAGGAAGGGAGGGATGAAG	T T	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02109.hp1 HG02257.hp1 others(11): Show HG01496.hp1 HG02109.hp1 HG02257.hp1 HG02258.hp1 HG02451.hp1 HG02559.hp2 HG02647.hp1 HG02970.hp2 HG03225.hp2 HG03471.hp1 HG03540.hp1 HG03579.hp2 HG06807.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0026 a0001c0002t0004	a0001c0001t0001g0171 a0001c0001t0001g0215 a0001c0001t0001g0219 others(11): Show a0001c0001t0001g0171 a0001c0001t0001g0215 a0001c0001t0001g0219 a0001c0001t0002g0081 a0001c0001t0003g0226 a0001c0001t0003g0227 a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 a0001c0001t0004g0036 a0001c0001t0005g0002 a0001c0001t0006g0277 a0001c0001t0026g0100 a0001c0002t0004g0224	14	280	0.0500	-24	c.-21 others(43): Show c.-21+41502_-21+41525delGAGGAAGGAAGGGAGGGATGAAGG		LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRG1_chr19_4531402_4545036	4535135	GCTCCCGG others(17): Show GCTCCCGGACGCCGCCCTCAGGGCA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0021 a0003c0003t0004g0021	1	420	0.0024	-24	c.27 others(35): Show c.2781_*2804delTGCCCTGAGGGCGGCGTCCGGGAG		LRG1	ENSG00000171236.10	transcript	ENST00000306390.7	protein_coding					1266		chr19	TogoVar
LRGUK_chr7_134122340_134269595	134169133	GACACACA others(17): Show GACACACACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01952.hp1 HG02080.hp2 others(21): Show HG00408.hp2 HG01952.hp1 HG02080.hp2 HG02293.hp2 HG02451.hp2 HG02647.hp1 HG03239.hp2 HG03486.hp2 HG03654.hp1 NA18943.hp1 NA18946.hp2 NA18948.hp1 NA18951.hp1 NA18960.hp1 NA18979.hp1 NA19000.hp2 NA19004.hp1 NA19007.hp2 NA19060.hp2 NA19062.hp1 NA19066.hp1 NA19091.hp1 NA20300.hp1 NA20300.hp2	a0001 a0007 a0011 a0001 a0007 a0011	a0001c0001 a0001c0003 a0007c0011 others(1): Show a0001c0001 a0001c0003 a0007c0011 a0011c0022	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0003t0003 a0001c0003t0004 a0007c0011t0003 a0011c0022t0001	a0001c0001t0001g0013 a0001c0001t0001g0118 a0001c0001t0001g0135 others(21): Show a0001c0001t0001g0013 a0001c0001t0001g0118 a0001c0001t0001g0135 a0001c0001t0004g0211 a0001c0001t0004g0212 a0001c0001t0005g0105 a0001c0003t0003g0005 a0001c0003t0003g0024 a0001c0003t0003g0110 a0001c0003t0003g0111 a0001c0003t0003g0128 a0001c0003t0003g0129 a0001c0003t0003g0130 a0001c0003t0003g0132 a0001c0003t0003g0133 a0001c0003t0003g0136 a0001c0003t0003g0137 a0001c0003t0003g0138 a0001c0003t0003g0157 a0001c0003t0003g0220 a0001c0003t0004g0041 a0007c0011t0003g0117 a0007c0011t0003g0119 a0011c0022t0001g0151	24	220	0.1091	-24	c.940 others(41): Show c.940-5384_940-5361delACACACACACACACACACACACAC		LRGUK	ENSG00000155530.4	transcript	ENST00000285928.3	protein_coding	7/19					INFO_REALIGN_3_PRIME	chr7	TogoVar
LRGUK_chr7_134122340_134269595	134180290	GTCCATCC others(17): Show GTCCATCCATCCATCCATCCATCCA	G G	intron_variant intron_variant	MODIFIER	NA19066.hp2 NA19066.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0142	1	220	0.0046	-24	c.121 others(43): Show c.1214+1706_1214+1729delTCCATCCATCCATCCATCCATCCA		LRGUK	ENSG00000155530.4	transcript	ENST00000285928.3	protein_coding	10/19					INFO_REALIGN_3_PRIME	chr7	TogoVar

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