Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SUSD6_chr14_69606596_69720144	69635595	CCACACAC others(17): Show CCACACACACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00558.hp2 HG00597.hp2 others(34): Show HG00099.hp2 HG00558.hp2 HG00597.hp2 HG00673.hp2 HG00735.hp2 HG01069.hp2 HG01261.hp2 HG02056.hp2 HG02071.hp2 HG02080.hp1 HG02155.hp1 HG02165.hp1 HG02735.hp1 HG03491.hp1 HG03834.hp2 HG03927.hp1 HG04199.hp2 HG04204.hp1 NA18939.hp2 NA18941.hp2 NA18953.hp2 NA18956.hp2 NA18957.hp2 NA18959.hp2 NA18960.hp2 NA18965.hp1 NA18966.hp2 NA18967.hp2 NA18970.hp1 NA18985.hp1 NA18993.hp2 NA19002.hp1 NA19003.hp2 NA19056.hp1 NA19062.hp2 NA19079.hp2 NA20805.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0003 a0001c0001t0016 a0001c0001t0017 others(5): Show a0001c0001t0003 a0001c0001t0016 a0001c0001t0017 a0001c0001t0020 a0001c0001t0025 a0001c0001t0049 a0001c0001t0050 a0004c0003t0003	a0001c0001t0003g0001 a0001c0001t0003g0003 a0001c0001t0003g0114 others(32): Show a0001c0001t0003g0001 a0001c0001t0003g0003 a0001c0001t0003g0114 a0001c0001t0003g0116 a0001c0001t0003g0117 a0001c0001t0003g0118 a0001c0001t0003g0119 a0001c0001t0003g0120 a0001c0001t0003g0122 a0001c0001t0003g0125 a0001c0001t0003g0126 a0001c0001t0003g0127 a0001c0001t0003g0128 a0001c0001t0003g0130 a0001c0001t0003g0133 a0001c0001t0003g0134 a0001c0001t0003g0137 a0001c0001t0003g0139 a0001c0001t0003g0142 a0001c0001t0003g0143 a0001c0001t0003g0259 a0001c0001t0016g0001 a0001c0001t0016g0113 a0001c0001t0016g0135 a0001c0001t0016g0136 a0001c0001t0017g0001 a0001c0001t0017g0112 a0001c0001t0017g0129 a0001c0001t0020g0123 a0001c0001t0020g0131 a0001c0001t0025g0115 a0001c0001t0025g0121 a0001c0001t0049g0141 a0001c0001t0050g0132 a0004c0003t0003g0124	37	288	0.1285	-24	c.-80 others(43): Show c.-80-22893_-80-22870delCACACACACACACACACACACACA	SUSD6	ENSG00000100647.8	transcript	ENST00000342745.5	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
SV2C_chr5_76078383_76338956	76223440	CATACATA others(17): Show CATACATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02896.hp1 HG02970.hp2 others(3): Show HG02738.hp1 HG02896.hp1 HG02970.hp2 HG03209.hp1 HG03834.hp1 HG04204.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0126 a0001c0001t0133 a0001c0002t0096 others(3): Show a0001c0001t0126 a0001c0001t0133 a0001c0002t0096 a0002c0003t0013 a0002c0003t0071 a0002c0003t0085	a0001c0001t0126g0172 a0001c0001t0133g0157 a0001c0002t0096g0112 others(3): Show a0001c0001t0126g0172 a0001c0001t0133g0157 a0001c0002t0096g0112 a0002c0003t0013g0226 a0002c0003t0071g0228 a0002c0003t0085g0215	6	234	0.0256	-24	c.913 others(43): Show c.913+13557_913+13580delCATATATATATATATATATATATA	SV2C	ENSG00000122012.14	transcript	ENST00000502798.7	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr5	TogoVar
SV2C_chr5_76078383_76338956	76223444	CATATATA others(17): Show CATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA19005.hp1 NA18968.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0011 a0001c0001t0003 a0001c0001t0011	a0001c0001t0003g0165 a0001c0001t0011g0056 a0001c0001t0003g0165 a0001c0001t0011g0056	2	234	0.0086	-24	c.913 others(43): Show c.913+13586_913+13609delATATATATATATATATATATATAT	SV2C	ENSG00000122012.14	transcript	ENST00000502798.7	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr5	TogoVar
SV2C_chr5_76078383_76338956	76223473	ATATATAT others(17): Show ATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0174 a0001c0002t0006g0174	1	234	0.0043	-24	c.913 others(43): Show c.913+13592_913+13615delATATATATATATATATATGTATAT	SV2C	ENSG00000122012.14	transcript	ENST00000502798.7	protein_coding	4/12		INFO_REALIGN_3_PRIME	chr5	TogoVar
SVBP_chr1_42802052_42822397	42808139	GTGTGTGT others(17): Show GTGTGTGTGTGTATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA19043.hp1 HG06807.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0193 a0001c0001t0002g0177 a0001c0001t0001g0193 a0001c0001t0002g0177	2	394	0.0051	-24	c.115 others(39): Show c.115-663_115-640delTATATATATATATACACACACACA	SVBP	ENSG00000177868.12	transcript	ENST00000372521.9	protein_coding	2/2			chr1	TogoVar
SVEP1_chr9_110360248_110584741	110533594	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGCACGCACACG	C C	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0037 a0037	a0037c0027 a0037c0027	a0037c0027t0003 a0037c0027t0003	a0037c0027t0003g0187 a0037c0027t0003g0187	1	362	0.0028	-24	c.964 others(43): Show c.964+12497_964+12520delCGTGTGCGTGCACACACACACACA	SVEP1	ENSG00000165124.19	transcript	ENST00000374469.6	protein_coding	3/47			chr9	TogoVar
SVEP1_chr9_110360248_110584741	110541797	ATATATAT others(17): Show ATATATATCTATATACATAGATATC	A A	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0001 a0004c0007t0001	a0004c0007t0001g0175 a0004c0007t0001g0175	1	362	0.0028	-24	c.964 others(41): Show c.964+4294_964+4317delGATATCTATGTATATAGATATATA	SVEP1	ENSG00000165124.19	transcript	ENST00000374469.6	protein_coding	3/47			chr9	TogoVar
SVOPL_chr7_138589285_138706362	138621814	GTATCTAT others(17): Show GTATCTATGTATCTATGTATCTATC	G G	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01258.hp1 HG02155.hp2 others(15): Show HG00609.hp2 HG01258.hp1 HG02155.hp2 HG02809.hp1 HG03453.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03834.hp2 HG03927.hp2 NA18945.hp1 NA18950.hp2 NA18993.hp1 NA19010.hp2 NA19011.hp1 NA19066.hp1 NA19085.hp1 NA19090.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0005 others(5): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008 a0002c0004 a0002c0006 a0002c0010 a0003c0007	a0001c0001t0001 a0001c0001t0010 a0001c0002t0001 others(7): Show a0001c0001t0001 a0001c0001t0010 a0001c0002t0001 a0001c0002t0003 a0001c0005t0002 a0001c0008t0002 a0002c0004t0001 a0002c0006t0002 a0002c0010t0002 a0003c0007t0001	a0001c0001t0001g0060 a0001c0001t0001g0132 a0001c0001t0001g0187 others(15): Show a0001c0001t0001g0060 a0001c0001t0001g0132 a0001c0001t0001g0187 a0001c0001t0001g0232 a0001c0001t0001g0332 a0001c0001t0010g0298 a0001c0002t0001g0143 a0001c0002t0001g0287 a0001c0002t0003g0052 a0001c0002t0003g0066 a0001c0002t0003g0067 a0001c0005t0002g0294 a0001c0008t0002g0185 a0002c0004t0001g0250 a0002c0006t0002g0006 a0002c0010t0002g0094 a0002c0010t0002g0181 a0003c0007t0001g0275	18	360	0.0500	-24	c.126 others(41): Show c.1264-703_1264-680delGATAGATACATAGATACATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138621894	CTATCTAT others(17): Show CTATCTATCTATGTATCTATCTATG	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0025 a0001c0025	a0001c0025t0001 a0001c0025t0001	a0001c0025t0001g0293 a0001c0025t0001g0293	1	360	0.0028	-24	c.126 others(41): Show c.1264-783_1264-760delCATAGATAGATACATAGATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138621994	CTATCTAT others(17): Show CTATCTATCTATGTATCTATCTATG	C C	intron_variant intron_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0004 a0003c0007t0004	a0003c0007t0004g0075 a0003c0007t0004g0075	1	360	0.0028	-24	c.126 others(41): Show c.1264-883_1264-860delCATAGATAGATACATAGATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138622006	GTATCTAT others(17): Show GTATCTATCTATGTATCTATCTATC	G G	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0046 a0002c0004t0001g0046	1	360	0.0028	-24	c.126 others(41): Show c.1264-895_1264-872delGATAGATAGATACATAGATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138622070	GTATCTAT others(17): Show GTATCTATCTATCTATCTATGTATC	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0351 a0001c0001t0001g0351	1	360	0.0028	-24	c.126 others(41): Show c.1264-959_1264-936delGATACATAGATAGATAGATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138622090	GTATCTAT others(17): Show GTATCTATCTATCTATCTATCTATC	G G	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0064 a0001c0001t0002g0064	1	360	0.0028	-24	c.126 others(41): Show c.1264-979_1264-956delGATAGATAGATAGATAGATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138622114	CTATCTAT others(17): Show CTATCTATGTATCTATCTATCTATG	C C	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	360	0.0028	-24	c.126 others(42): Show c.1264-1003_1264-980delCATAGATAGATAGATACATAGATA	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	13/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138637481	GATATAGA others(17): Show GATATAGATAGATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01243.hp1 HG01884.hp2 others(15): Show HG00733.hp2 HG01243.hp1 HG01884.hp2 HG02615.hp1 HG02622.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp2 HG03139.hp2 HG03225.hp1 HG06807.hp1 NA18522.hp2 NA19240.hp2	a0001 a0002 a0012 a0001 a0002 a0012	a0001c0001 a0001c0005 a0002c0003 others(2): Show a0001c0001 a0001c0005 a0002c0003 a0002c0004 a0012c0023	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(5): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0005t0001 a0001c0005t0002 a0002c0003t0001 a0002c0004t0001 a0012c0023t0001	a0001c0001t0001g0016 a0001c0001t0001g0174 a0001c0001t0001g0242 others(15): Show a0001c0001t0001g0016 a0001c0001t0001g0174 a0001c0001t0001g0242 a0001c0001t0001g0322 a0001c0001t0001g0323 a0001c0001t0001g0328 a0001c0001t0001g0332 a0001c0001t0003g0348 a0001c0001t0006g0357 a0001c0001t0006g0358 a0001c0005t0001g0058 a0001c0005t0001g0059 a0001c0005t0001g0171 a0001c0005t0002g0117 a0002c0003t0001g0042 a0002c0003t0001g0183 a0002c0004t0001g0116 a0012c0023t0001g0118	18	360	0.0500	-24	c.789 others(41): Show c.789+7212_789+7235delATATATATATATATCTATCTATAT	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	9/15			chr7	TogoVar
SVOPL_chr7_138589285_138706362	138693529	AAAAGAAA others(17): Show AAAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02622.hp2 HG02976.hp1 others(2): Show HG02280.hp1 HG02622.hp2 HG02976.hp1 HG03209.hp2 HG03579.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0003 others(1): Show a0001c0001 a0001c0005 a0002c0003 a0002c0015	a0001c0001t0001 a0001c0005t0001 a0002c0003t0002 others(1): Show a0001c0001t0001 a0001c0005t0001 a0002c0003t0002 a0002c0015t0001	a0001c0001t0001g0012 a0001c0001t0001g0040 a0001c0005t0001g0226 others(2): Show a0001c0001t0001g0012 a0001c0001t0001g0040 a0001c0005t0001g0226 a0002c0003t0002g0010 a0002c0015t0001g0013	5	360	0.0139	-24	c.-35 others(41): Show c.-35+7625_-35+7648delCTTTCTTTCTTTCTTTCTTTCTTT	SVOPL	ENSG00000157703.16	transcript	ENST00000674285.1	protein_coding	1/15			chr7	TogoVar
SWAP70_chr11_9659077_9757993	9675322	AGAGAGAG others(17): Show AGAGAGAGAGAGAGAGAGAGGGAGC	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00673.hp1 HG03017.hp1 others(13): Show HG00280.hp2 HG00673.hp1 HG03017.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG04115.hp1 NA18942.hp1 NA18950.hp1 NA18952.hp2 NA18965.hp2 NA18977.hp1 NA18984.hp2 NA18999.hp1 NA19006.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 others(1): Show a0001c0002 a0001c0003 a0002c0001 a0002c0004	a0001c0002t0002 a0001c0003t0003 a0002c0001t0001 others(4): Show a0001c0002t0002 a0001c0003t0003 a0002c0001t0001 a0002c0001t0006 a0002c0001t0012 a0002c0001t0023 a0002c0004t0001	a0001c0002t0002g0128 a0001c0002t0002g0135 a0001c0002t0002g0141 others(13): Show a0001c0002t0002g0128 a0001c0002t0002g0135 a0001c0002t0002g0141 a0001c0002t0002g0152 a0001c0002t0002g0163 a0001c0003t0003g0109 a0002c0001t0001g0035 a0002c0001t0001g0036 a0002c0001t0001g0054 a0002c0001t0001g0062 a0002c0001t0006g0103 a0002c0001t0012g0057 a0002c0001t0012g0060 a0002c0001t0023g0053 a0002c0004t0001g0139 a0002c0004t0001g0168	16	294	0.0544	-24	c.99+ others(41): Show c.99+11064_99+11087delGGAGCGAGAGAGAGAGAGAGAGAG	SWAP70	ENSG00000133789.15	transcript	ENST00000318950.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
SWAP70_chr11_9659077_9757993	9675346	CGAGAGAG others(17): Show CGAGAGAGAGAGAGAGAGAGAGAGA	C C	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02109.hp2 HG02572.hp2 HG01891.hp1 HG02109.hp2 HG02572.hp2	a0002 a0002	a0002c0001 a0002c0006 a0002c0001 a0002c0006	a0002c0001t0014 a0002c0006t0001 a0002c0001t0014 a0002c0006t0001	a0002c0001t0014g0239 a0002c0006t0001g0022 a0002c0006t0001g0237 a0002c0001t0014g0239 a0002c0006t0001g0022 a0002c0006t0001g0237	3	294	0.0102	-24	c.99+ others(41): Show c.99+11120_99+11143delAGAGAGAGAGAGAGAGAGAGAGAG	SWAP70	ENSG00000133789.15	transcript	ENST00000318950.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
SWI5_chr9_128271276_128293989	128291978	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp2 HG00438.hp1 HG01167.hp2 others(5): Show HG00408.hp2 HG00438.hp1 HG01167.hp2 HG02080.hp1 HG02080.hp2 NA18944.hp2 NA19000.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0001g0017 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0026 a0001c0001t0001g0029 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0234	8	386	0.0207	-24	c.32 others(35): Show c.3263_*3286delAAAAAAAAAAAAAAAAAAAAAAAA	SWI5	ENSG00000175854.15	transcript	ENST00000418976.3	protein_coding		2990		chr9	TogoVar
SYCE1_chr10_133549847_133570583	133562261	ATGTGTGT others(17): Show ATGTGTGTGTGTGTGTGTGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00438.hp1 HG00558.hp2 others(50): Show HG00408.hp2 HG00438.hp1 HG00558.hp2 HG00609.hp1 HG00733.hp2 HG01099.hp2 HG01109.hp2 HG01243.hp2 HG01261.hp1 HG01433.hp2 HG01943.hp2 HG01978.hp1 HG02015.hp1 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02135.hp1 HG02148.hp1 HG02293.hp2 NA18747.hp2 NA18944.hp1 NA18945.hp1 NA18950.hp1 NA18951.hp2 NA18953.hp2 NA18955.hp1 NA18956.hp2 NA18962.hp1 NA18967.hp1 NA18974.hp1 NA18979.hp1 NA18985.hp1 NA18992.hp2 NA18995.hp1 NA18998.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp2 NA19011.hp1 NA19012.hp1 NA19055.hp1 NA19057.hp1 NA19057.hp2 NA19063.hp2 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp2 NA19082.hp2 NA19085.hp2 NA19091.hp2 NA20752.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0005 a0002c0002t0002 a0002c0002t0005	a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0011 others(7): Show a0002c0002t0002g0003 a0002c0002t0002g0007 a0002c0002t0002g0011 a0002c0002t0002g0027 a0002c0002t0002g0029 a0002c0002t0002g0041 a0002c0002t0002g0044 a0002c0002t0002g0045 a0002c0002t0002g0046 a0002c0002t0005g0109	53	384	0.1380	-24	c.74- others(39): Show c.74-2132_74-2109delCACACACACACACACACACACACA	SYCE1	ENSG00000171772.17	transcript	ENST00000343131.7	protein_coding	1/12			chr10	TogoVar
SYCP2L_chr6_10882052_10979309	10888066	CTTTTTTT others(17): Show CTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp1 HG00609.hp1 others(34): Show HG00099.hp1 HG00280.hp1 HG00609.hp1 HG00642.hp2 HG00733.hp2 HG01070.hp2 HG01168.hp2 HG01175.hp2 HG01243.hp1 HG01257.hp2 HG01433.hp1 HG02027.hp1 HG02074.hp2 HG02300.hp2 HG02698.hp1 HG02818.hp1 HG04115.hp2 NA18612.hp2 NA18946.hp1 NA18954.hp1 NA18954.hp2 NA18955.hp2 NA18960.hp2 NA18969.hp1 NA18970.hp1 NA18983.hp1 NA18983.hp2 NA18989.hp2 NA18991.hp1 NA19000.hp1 NA19011.hp2 NA19012.hp2 NA19062.hp2 NA19070.hp2 NA19080.hp2 NA19088.hp1 NA21309.hp1	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0004 a0005 a0009 a0011	a0001c0001 a0001c0002 a0002c0003 others(5): Show a0001c0001 a0001c0002 a0002c0003 a0003c0004 a0004c0005 a0005c0008 a0009c0015 a0011c0017	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0002c0003t0002 a0003c0004t0001 a0004c0005t0001 a0005c0008t0001 a0009c0015t0002 a0011c0017t0002	a0001c0001t0001g0256 a0001c0001t0001g0349 a0001c0001t0002g0003 others(32): Show a0001c0001t0001g0256 a0001c0001t0001g0349 a0001c0001t0002g0003 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0266 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0275 a0001c0001t0002g0278 a0001c0001t0002g0280 a0001c0001t0002g0281 a0001c0002t0001g0259 a0001c0002t0001g0260 a0001c0002t0001g0261 a0001c0002t0001g0262 a0001c0002t0001g0263 a0001c0002t0001g0264 a0001c0002t0001g0265 a0001c0002t0001g0267 a0001c0002t0001g0276 a0001c0002t0001g0279 a0002c0003t0002g0252 a0002c0003t0002g0257 a0003c0004t0001g0268 a0003c0004t0001g0269 a0003c0004t0001g0277 a0003c0004t0001g0348 a0004c0005t0001g0270 a0005c0008t0001g0271 a0005c0008t0001g0272 a0009c0015t0002g0002 a0009c0015t0002g0258 a0011c0017t0002g0251	37	354	0.1045	-24	c.9+9 others(35): Show c.9+956_9+979delTTTTTTTTTTTTTTTTTTTTTTTT	SYCP2L	ENSG00000153157.14	transcript	ENST00000283141.11	protein_coding	1/29		INFO_REALIGN_3_PRIME	chr6	TogoVar
SYCP2L_chr6_10882052_10979309	10891609	CTCTCTGT others(17): Show CTCTCTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG02056.hp2 NA18952.hp2 NA18988.hp2 HG02056.hp2 NA18952.hp2 NA18988.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0176 a0001c0002t0001g0177 a0001c0002t0001g0233 a0001c0002t0001g0176 a0001c0002t0001g0177 a0001c0002t0001g0233	3	354	0.0085	-24	c.78+ others(35): Show c.78+30_78+53delCTCTGTGTGTGTGTGTGTGTGTGT	SYCP2L	ENSG00000153157.14	transcript	ENST00000283141.11	protein_coding	2/29		INFO_REALIGN_3_PRIME	chr6	TogoVar
SYCP2_chr20_59858571_59938637	59879818	AATAAATA others(17): Show AATAAATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01884.hp1 HG02559.hp1 others(6): Show HG00741.hp2 HG01884.hp1 HG02559.hp1 HG02886.hp2 HG03098.hp1 HG03195.hp2 HG03453.hp1 HG03486.hp1 NA19030.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0011 a0001c0001 a0006c0011	a0001c0001t0001 a0006c0011t0001 a0001c0001t0001 a0006c0011t0001	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 others(6): Show a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0113 a0006c0011t0001g0027 a0006c0011t0001g0264	9	276	0.0326	-24	c.294 others(41): Show c.2941+461_2941+484delATATATATATATATATATATTTAT	SYCP2	ENSG00000196074.13	transcript	ENST00000357552.8	protein_coding	31/44			chr20	TogoVar
SYN3_chr22_32502820_33063381	32564693	TCGGACTG others(17): Show TCGGACTGCACCCAAACAGTGCTCC	T T	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0039 a0001c0001t0039	a0001c0001t0039g0144 a0001c0001t0039g0144	1	184	0.0054	-24	c.775 others(43): Show c.775-23004_775-22981delGGAGCACTGTTTGGGTGCAGTCCG	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32564852	TGCTCCCG others(17): Show TGCTCCCGGACTGCACCCTAACAGC	T T	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01258.hp1 HG02071.hp1 others(3): Show HG00673.hp2 HG01258.hp1 HG02071.hp1 HG02165.hp2 NA19063.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0062 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0062 a0001c0001t0068	a0001c0001t0001g0051 a0001c0001t0001g0117 a0001c0001t0001g0179 others(3): Show a0001c0001t0001g0051 a0001c0001t0001g0117 a0001c0001t0001g0179 a0001c0001t0002g0123 a0001c0001t0062g0181 a0001c0001t0068g0122	6	184	0.0326	-24	c.775 others(43): Show c.775-23163_775-23140delGCTGTTAGGGTGCAGTCCGGGAGC	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32564937	TACCCAAA others(17): Show TACCCAAACAGTGCTCCTGGACTGC	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp2 HG00673.hp1 others(48): Show HG00323.hp1 HG00323.hp2 HG00673.hp1 HG00673.hp2 HG00741.hp2 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01109.hp1 HG01175.hp2 HG01192.hp2 HG01258.hp1 HG01261.hp2 HG01358.hp1 HG01978.hp2 HG02040.hp1 HG02055.hp1 HG02055.hp2 HG02056.hp1 HG02071.hp1 HG02071.hp2 HG02165.hp2 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02630.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03492.hp1 HG03688.hp2 HG03704.hp2 HG03927.hp1 NA18906.hp1 NA18906.hp2 NA18957.hp2 NA18969.hp2 NA18980.hp1 NA18984.hp1 NA19063.hp1 NA19063.hp2 NA19091.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0001c0006 others(1): Show a0001c0001 a0001c0004 a0001c0006 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0015 a0001c0001t0018 a0001c0001t0020 a0001c0001t0021 a0001c0001t0026 a0001c0001t0030 a0001c0001t0038 a0001c0001t0045 a0001c0001t0054 a0001c0001t0058 a0001c0001t0059 a0001c0001t0062 a0001c0001t0066 a0001c0001t0068 a0001c0001t0070 a0001c0001t0073 a0001c0001t0078 a0001c0001t0079 a0001c0004t0017 a0001c0006t0007 a0002c0002t0004 a0002c0002t0011 a0002c0002t0051	a0001c0001t0001g0011 a0001c0001t0001g0048 a0001c0001t0001g0051 others(48): Show a0001c0001t0001g0011 a0001c0001t0001g0048 a0001c0001t0001g0051 a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0162 a0001c0001t0001g0179 a0001c0001t0002g0018 a0001c0001t0002g0037 a0001c0001t0002g0049 a0001c0001t0002g0057 a0001c0001t0002g0072 a0001c0001t0002g0123 a0001c0001t0002g0182 a0001c0001t0003g0016 a0001c0001t0003g0107 a0001c0001t0003g0128 a0001c0001t0007g0079 a0001c0001t0007g0172 a0001c0001t0008g0047 a0001c0001t0008g0133 a0001c0001t0009g0170 a0001c0001t0015g0043 a0001c0001t0018g0106 a0001c0001t0020g0022 a0001c0001t0020g0156 a0001c0001t0021g0064 a0001c0001t0026g0026 a0001c0001t0026g0171 a0001c0001t0030g0015 a0001c0001t0038g0038 a0001c0001t0045g0068 a0001c0001t0054g0002 a0001c0001t0058g0180 a0001c0001t0059g0078 a0001c0001t0062g0181 a0001c0001t0066g0052 a0001c0001t0068g0122 a0001c0001t0070g0006 a0001c0001t0073g0175 a0001c0001t0078g0003 a0001c0001t0079g0004 a0001c0004t0017g0095 a0001c0006t0007g0074 a0002c0002t0004g0027 a0002c0002t0004g0110 a0002c0002t0004g0152 a0002c0002t0004g0159 a0002c0002t0011g0061 a0002c0002t0011g0102 a0002c0002t0051g0142	51	184	0.2772	-24	c.775 others(43): Show c.775-23248_775-23225delGCAGTCCAGGAGCACTGTTTGGGT	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32564978	TGGACTGC others(17): Show TGGACTGCACCCAAACAGTGCTCCC	T T	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01192.hp1 HG01433.hp2 others(26): Show HG01099.hp1 HG01192.hp1 HG01433.hp2 HG01496.hp2 HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02257.hp1 HG02280.hp2 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG02717.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02965.hp1 HG02970.hp2 HG03098.hp2 HG03471.hp2 HG03486.hp1 HG03579.hp1 HG03579.hp2 HG03927.hp2 NA19030.hp2 NA20129.hp2 NA20752.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(21): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0018 a0001c0001t0021 a0001c0001t0024 a0001c0001t0031 a0001c0001t0033 a0001c0001t0041 a0001c0001t0042 a0001c0001t0076 a0001c0003t0004 a0001c0003t0005 a0001c0003t0037 a0001c0003t0043 a0002c0002t0004 a0002c0002t0011 a0002c0002t0023 a0002c0002t0048 a0002c0002t0055	a0001c0001t0001g0097 a0001c0001t0003g0157 a0001c0001t0003g0169 others(26): Show a0001c0001t0001g0097 a0001c0001t0003g0157 a0001c0001t0003g0169 a0001c0001t0007g0082 a0001c0001t0008g0134 a0001c0001t0009g0067 a0001c0001t0009g0090 a0001c0001t0010g0087 a0001c0001t0010g0183 a0001c0001t0014g0101 a0001c0001t0018g0146 a0001c0001t0021g0149 a0001c0001t0024g0147 a0001c0001t0031g0143 a0001c0001t0033g0148 a0001c0001t0041g0096 a0001c0001t0042g0088 a0001c0001t0076g0069 a0001c0003t0004g0105 a0001c0003t0005g0099 a0001c0003t0037g0103 a0001c0003t0043g0161 a0002c0002t0004g0059 a0002c0002t0004g0140 a0002c0002t0011g0166 a0002c0002t0023g0119 a0002c0002t0023g0164 a0002c0002t0048g0084 a0002c0002t0055g0063	29	184	0.1576	-24	c.775 others(43): Show c.775-23289_775-23266delGGGAGCACTGTTTGGGTGCAGTCC	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32565025	CCGGACTG others(17): Show CCGGACTGCACCCAAACAGTGATCT	C C	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0049 a0001c0003t0049	a0001c0003t0049g0120 a0001c0003t0049g0120	1	184	0.0054	-24	c.775 others(43): Show c.775-23336_775-23313delAGATCACTGTTTGGGTGCAGTCCG	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32565149	GCTGCACC others(17): Show GCTGCACCCAAACAGTGCTCTCGGA	G G	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01258.hp1 HG02071.hp1 others(16): Show HG00673.hp2 HG01258.hp1 HG02071.hp1 HG02074.hp2 HG02165.hp2 HG02622.hp1 HG03669.hp1 HG03831.hp1 HG03831.hp2 HG04184.hp2 NA18957.hp1 NA18960.hp1 NA18960.hp2 NA18984.hp2 NA18995.hp2 NA19063.hp1 NA19065.hp2 NA19088.hp2 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0015 a0001c0001t0061 a0001c0001t0062 a0001c0001t0068 a0001c0001t0069 a0001c0001t0074 a0001c0001t0075 a0002c0002t0022 a0002c0002t0071	a0001c0001t0001g0035 a0001c0001t0001g0051 a0001c0001t0001g0117 others(16): Show a0001c0001t0001g0035 a0001c0001t0001g0051 a0001c0001t0001g0117 a0001c0001t0001g0179 a0001c0001t0002g0007 a0001c0001t0002g0123 a0001c0001t0002g0174 a0001c0001t0003g0017 a0001c0001t0003g0125 a0001c0001t0003g0176 a0001c0001t0015g0058 a0001c0001t0061g0034 a0001c0001t0062g0181 a0001c0001t0068g0122 a0001c0001t0069g0126 a0001c0001t0074g0071 a0001c0001t0075g0178 a0002c0002t0022g0001 a0002c0002t0071g0155	19	184	0.1033	-24	c.775 others(43): Show c.775-23460_775-23437delTCCGAGAGCACTGTTTGGGTGCAG	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	7/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32962801	CATCTATC others(17): Show CATCTATCTATCTATCTATCTATCT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01884.hp1 HG02055.hp2 others(8): Show HG01081.hp2 HG01884.hp1 HG02055.hp2 HG02258.hp1 HG02622.hp1 HG02630.hp2 HG02723.hp2 HG02818.hp1 HG06807.hp2 NA19240.hp1 NA20129.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0007 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 others(8): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0009 a0001c0001t0010 a0001c0001t0032 a0001c0003t0004 a0001c0004t0017 a0001c0007t0080 a0002c0002t0004 a0002c0002t0011 a0002c0002t0071	a0001c0001t0001g0011 a0001c0001t0003g0169 a0001c0001t0009g0170 others(8): Show a0001c0001t0001g0011 a0001c0001t0003g0169 a0001c0001t0009g0170 a0001c0001t0010g0165 a0001c0001t0032g0150 a0001c0003t0004g0040 a0001c0004t0017g0055 a0001c0007t0080g0112 a0002c0002t0004g0111 a0002c0002t0011g0166 a0002c0002t0071g0155	11	184	0.0598	-24	c.369 others(43): Show c.369+17820_369+17843delAGATAGATAGATAGATAGATAGAT	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	3/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32990267	CCCATCCA others(17): Show CCCATCCATGAATCCATCCATGAAT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01099.hp2 HG01106.hp1 others(11): Show HG00735.hp1 HG01099.hp2 HG01106.hp1 HG02145.hp1 HG02257.hp1 HG02647.hp2 HG02895.hp2 HG02965.hp1 HG02976.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp2 HG03540.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0002c0002	a0001c0001t0001 a0001c0001t0018 a0001c0001t0030 others(8): Show a0001c0001t0001 a0001c0001t0018 a0001c0001t0030 a0001c0001t0034 a0001c0001t0042 a0001c0001t0072 a0001c0003t0004 a0001c0003t0005 a0001c0003t0037 a0001c0004t0017 a0002c0002t0004	a0001c0001t0001g0029 a0001c0001t0001g0097 a0001c0001t0018g0106 others(11): Show a0001c0001t0001g0029 a0001c0001t0001g0097 a0001c0001t0018g0106 a0001c0001t0030g0028 a0001c0001t0034g0108 a0001c0001t0042g0088 a0001c0001t0072g0031 a0001c0003t0004g0105 a0001c0003t0005g0098 a0001c0003t0005g0099 a0001c0003t0037g0103 a0001c0004t0017g0095 a0002c0002t0004g0027 a0002c0002t0004g0167	14	184	0.0761	-24	c.312 others(41): Show c.312-9589_312-9566delATTCATGGATGGATTCATGGATGG	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	2/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	32990407	GCCATCCA others(17): Show GCCATCCATCCATCCATCCATCCAT	G G	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG03195.hp1 HG03471.hp1 others(3): Show HG02280.hp2 HG03195.hp1 HG03471.hp1 HG03471.hp2 HG03516.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0009 a0001c0001t0010 a0001c0001t0016 others(3): Show a0001c0001t0009 a0001c0001t0010 a0001c0001t0016 a0001c0001t0053 a0001c0004t0035 a0002c0002t0011	a0001c0001t0009g0067 a0001c0001t0010g0087 a0001c0001t0016g0145 others(3): Show a0001c0001t0009g0067 a0001c0001t0010g0087 a0001c0001t0016g0145 a0001c0001t0053g0041 a0001c0004t0035g0066 a0002c0002t0011g0061	6	184	0.0326	-24	c.312 others(41): Show c.312-9729_312-9706delATGGATGGATGGATGGATGGATGG	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	2/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	33028643	ATGGTGGT others(17): Show ATGGTGGTGGTGGTGGTGGTGGTGG	A A	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0162 a0001c0001t0001g0162	1	184	0.0054	-24	c.-16 others(45): Show c.-162-21843_-162-21820delCCACCACCACCACCACCACCACCA	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	1/13			chr22	TogoVar
SYN3_chr22_32502820_33063381	33028667	GTGGTGGT others(17): Show GTGGTGGTGGTGGTGGTGGTGGTGA	G G	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02886.hp2 HG06807.hp1 HG01099.hp1 HG02886.hp2 HG06807.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0021 a0001c0001t0033 a0002c0002t0005 a0001c0001t0021 a0001c0001t0033 a0002c0002t0005	a0001c0001t0021g0149 a0001c0001t0033g0148 a0002c0002t0005g0141 a0001c0001t0021g0149 a0001c0001t0033g0148 a0002c0002t0005g0141	3	184	0.0163	-24	c.-16 others(45): Show c.-162-21867_-162-21844delTCACCACCACCACCACCACCACCA	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	1/13			chr22	TogoVar
SYNCRIP_chr6_85608976_85647886	85616567	ACCCACCT others(17): Show ACCCACCTCGGCCTAGAGTGATCTG	A A	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG02293.hp1 HG01433.hp1 HG02293.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0181 a0001c0001t0001g0165 a0001c0001t0001g0181	2	364	0.0055	-24	c.128 others(43): Show c.1281-1244_1281-1221delCAGATCACTCTAGGCCGAGGTGGG	SYNCRIP	ENSG00000135316.20	transcript	ENST00000369622.8	protein_coding	10/10			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152184631	TATAGATA others(17): Show TATAGATAGATAGATAGATAGATAG	T T	intron_variant intron_variant	MODIFIER	NA18957.hp1 NA19066.hp1 NA18957.hp1 NA19066.hp1	a0001 a0056 a0001 a0056	a0001c0139 a0056c0045 a0001c0139 a0056c0045	a0001c0139t0006 a0056c0045t0007 a0001c0139t0006 a0056c0045t0007	a0001c0139t0006g0146 a0056c0045t0007g0161 a0001c0139t0006g0146 a0056c0045t0007g0161	2	174	0.0115	-24	c.233 others(45): Show c.23302-4361_23302-4338delCTATCTATCTATCTATCTATCTAT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	128/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152253817	GGTTTTTT others(17): Show GGTTTTTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02572.hp1 HG02622.hp1 others(1): Show HG02559.hp2 HG02572.hp1 HG02622.hp1 HG02647.hp1	a0014 a0034 a0045 others(1): Show a0014 a0034 a0045 a0125	a0014c0115 a0034c0103 a0045c0041 others(1): Show a0014c0115 a0034c0103 a0045c0041 a0125c0014	a0014c0115t0004 a0034c0103t0004 a0045c0041t0002 others(1): Show a0014c0115t0004 a0034c0103t0004 a0045c0041t0002 a0125c0014t0005	a0014c0115t0004g0019 a0034c0103t0004g0092 a0045c0041t0002g0089 others(1): Show a0014c0115t0004g0019 a0034c0103t0004g0092 a0045c0041t0002g0089 a0125c0014t0005g0090	4	174	0.0230	-24	c.194 others(45): Show c.19470+1039_19470+1062delAAAAAAAAAAAAAAAAAAAAAAAC	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	104/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152363497	CTAAATAA others(17): Show CTAAATAAATAAATAAATAAATAAA	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp1 HG01069.hp1 HG01071.hp1	a0015 a0015	a0015c0001 a0015c0001	a0015c0001t0001 a0015c0001t0001	a0015c0001t0001g0077 a0015c0001t0001g0078 a0015c0001t0001g0077 a0015c0001t0001g0078	2	174	0.0115	-24	c.101 others(45): Show c.10146-1198_10146-1175delTTTATTTATTTATTTATTTATTTA	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	63/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152377624	AAAAAAAA others(17): Show AAAAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02258.hp1 HG02572.hp2 others(3): Show HG01109.hp1 HG02258.hp1 HG02572.hp2 HG02622.hp1 HG03139.hp1 HG03486.hp2	a0021 a0071 a0083 others(3): Show a0021 a0071 a0083 a0089 a0120 a0125	a0021c0154 a0071c0098 a0083c0039 others(3): Show a0021c0154 a0071c0098 a0083c0039 a0089c0108 a0120c0117 a0125c0014	a0021c0154t0003 a0071c0098t0004 a0083c0039t0002 others(3): Show a0021c0154t0003 a0071c0098t0004 a0083c0039t0002 a0089c0108t0005 a0120c0117t0004 a0125c0014t0005	a0021c0154t0003g0113 a0071c0098t0004g0012 a0083c0039t0002g0025 others(3): Show a0021c0154t0003g0113 a0071c0098t0004g0012 a0083c0039t0002g0025 a0089c0108t0005g0067 a0120c0117t0004g0009 a0125c0014t0005g0090	6	174	0.0345	-24	c.901 others(41): Show c.9010-736_9010-713delATATATATTTTTTTTTTTTTTTTT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	56/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152604986	AAGAAAGA others(17): Show AAGAAAGAAAGAAAGAAAGAAAGAG	A A	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0094 a0094	a0094c0143 a0094c0143	a0094c0143t0004 a0094c0143t0004	a0094c0143t0004g0037 a0094c0143t0004g0037	1	174	0.0058	-24	c.67+ others(41): Show c.67+23255_67+23278delCTCTTTCTTTCTTTCTTTCTTTCT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	3/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152605025	AGAGAGAG others(17): Show AGAGAGAGAGAGGGAGGGAGGGAGG	A A	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0075 a0075	a0075c0099 a0075c0099	a0075c0099t0003 a0075c0099t0003	a0075c0099t0003g0097 a0075c0099t0003g0097	1	174	0.0058	-24	c.67+ others(41): Show c.67+23216_67+23239delCCTCCCTCCCTCCCTCTCTCTCTC	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	3/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152605062	GAGGGAGG others(17): Show GAGGGAGGGAGGAAAGAAGGAAGGA	G G	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0023 a0023	a0023c0012 a0023c0012	a0023c0012t0004 a0023c0012t0004	a0023c0012t0004g0054 a0023c0012t0004g0054	1	174	0.0058	-24	c.67+ others(41): Show c.67+23179_67+23202delTCCTTCCTTCTTTCCTCCCTCCCT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	3/145			chr6	TogoVar
SYNE2_chr14_63848004_64231433	63974884	GTGTGTGT others(17): Show GTGTGTGTGTATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG04199.hp1 NA18986.hp2 HG04199.hp1 NA18986.hp2	a0019 a0045 a0019 a0045	a0019c0021 a0045c0073 a0019c0021 a0045c0073	a0019c0021t0002 a0045c0073t0002 a0019c0021t0002 a0045c0073t0002	a0019c0021t0002g0021 a0045c0073t0002g0019 a0019c0021t0002g0021 a0045c0073t0002g0019	2	150	0.0133	-24	c.112 others(43): Show c.1129-1677_1129-1654delGTGTGTGTATATATATATATATAT	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	11/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNE2_chr14_63848004_64231433	63974890	GTGTATAT others(17): Show GTGTATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02809.hp1 HG02922.hp1 others(2): Show HG02257.hp1 HG02809.hp1 HG02922.hp1 NA18906.hp1 NA19240.hp1	a0007 a0065 a0066 a0007 a0065 a0066	a0007c0011 a0065c0046 a0066c0045 a0007c0011 a0065c0046 a0066c0045	a0007c0011t0004 a0007c0011t0010 a0065c0046t0001 others(1): Show a0007c0011t0004 a0007c0011t0010 a0065c0046t0001 a0066c0045t0001	a0007c0011t0004g0029 a0007c0011t0004g0055 a0007c0011t0010g0054 others(2): Show a0007c0011t0004g0029 a0007c0011t0004g0055 a0007c0011t0010g0054 a0065c0046t0001g0114 a0066c0045t0001g0115	5	150	0.0333	-24	c.112 others(43): Show c.1129-1671_1129-1648delGTATATATATATATATATATATAT	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	11/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNE2_chr14_63848004_64231433	64217257	ATGGTCGT others(17): Show ATGGTCGTGATTATTATTCCTGTAT	A A	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02897.hp2 HG02965.hp1 others(4): Show HG01074.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03130.hp2 HG03195.hp1 NA18747.hp1	a0003 a0008 a0013 others(3): Show a0003 a0008 a0013 a0016 a0021 a0032	a0003c0002 a0008c0078 a0013c0032 others(4): Show a0003c0002 a0008c0078 a0013c0032 a0016c0070 a0021c0024 a0021c0048 a0032c0082	a0003c0002t0011 a0008c0078t0001 a0013c0032t0001 others(4): Show a0003c0002t0011 a0008c0078t0001 a0013c0032t0001 a0016c0070t0001 a0021c0024t0001 a0021c0048t0001 a0032c0082t0001	a0003c0002t0011g0009 a0008c0078t0001g0085 a0013c0032t0001g0103 others(4): Show a0003c0002t0011g0009 a0008c0078t0001g0085 a0013c0032t0001g0103 a0016c0070t0001g0092 a0021c0024t0001g0146 a0021c0048t0001g0042 a0032c0082t0001g0100	7	150	0.0467	-24	c.195 others(43): Show c.19542+899_19542+922delCGTGATTATTATTCCTGTATTGGT	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	108/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNJ1_chr21_32623763_32733013	32713348	GTCAACAT others(17): Show GTCAACATGGATGATTTCCCATATA	G G	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02723.hp2 HG02818.hp1 others(1): Show HG00741.hp2 HG02723.hp2 HG02818.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0098 a0001c0001t0002g0099 a0001c0001t0002g0100 others(1): Show a0001c0001t0002g0098 a0001c0001t0002g0099 a0001c0001t0002g0100 a0001c0001t0002g0101	4	346	0.0116	-24	c.125 others(43): Show c.125-11325_125-11302delTATATGGGAAATCATCCATGTTGA	SYNJ1	ENSG00000159082.18	transcript	ENST00000674351.1	protein_coding	2/32			chr21	TogoVar
SYNJ1_chr21_32623763_32733013	32713372	ATCAACAT others(17): Show ATCAACATGGATGATTTCCCATATG	A A	intron_variant intron_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0127 a0001c0001t0007g0127	1	346	0.0029	-24	c.125 others(43): Show c.125-11349_125-11326delCATATGGGAAATCATCCATGTTGA	SYNJ1	ENSG00000159082.18	transcript	ENST00000674351.1	protein_coding	2/32			chr21	TogoVar
SYNJ1_chr21_32623763_32733013	32713548	AGATGATT others(17): Show AGATGATTTCCCATATGTCAACATG	A A	intron_variant intron_variant	MODIFIER	NA19002.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0128 a0001c0001t0002g0128	1	346	0.0029	-24	c.125 others(43): Show c.125-11525_125-11502delCATGTTGACATATGGGAAATCATC	SYNJ1	ENSG00000159082.18	transcript	ENST00000674351.1	protein_coding	2/32			chr21	TogoVar
SYNJ1_chr21_32623763_32733013	32713732	ATCAACAT others(17): Show ATCAACATGGATGATTTCCCATATG	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 NA21309.hp1 HG03098.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0091 a0001c0001t0002g0129 a0001c0001t0002g0091 a0001c0001t0002g0129	2	346	0.0058	-24	c.125 others(43): Show c.125-11709_125-11686delCATATGGGAAATCATCCATGTTGA	SYNJ1	ENSG00000159082.18	transcript	ENST00000674351.1	protein_coding	2/32			chr21	TogoVar
SYNJ2_chr6_157976863_158104176	157989427	AATATATA others(17): Show AATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18971.hp2 NA18966.hp2 NA18971.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0173 a0002c0002t0003g0174 a0002c0002t0003g0173 a0002c0002t0003g0174	2	312	0.0064	-24	c.127 others(41): Show c.127+7356_127+7379delATATATATATATATATATATATAT	SYNJ2	ENSG00000078269.15	transcript	ENST00000355585.9	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr6	TogoVar

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