Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CHAF1B_chr21_36380392_36424015	36401352	AATATATT others(17): Show AATATATTTTTATATTATACATAAT	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01981.hp2 HG03225.hp2 others(5): Show HG00673.hp1 HG01981.hp2 HG03225.hp2 HG03239.hp1 NA18942.hp2 NA18966.hp1 NA18983.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0094 others(5): Show a0001c0001t0001g0090 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0119 a0001c0001t0001g0150 a0001c0001t0001g0214	8	346	0.0231	-24	c.664 others(41): Show c.664-1180_664-1157delTATATTATACATAATATATATTTT	CHAF1B	ENSG00000159259.8	transcript	ENST00000314103.6	protein_coding	7/13		INFO_REALIGN_3_PRIME	chr21	TogoVar
CHAT_chr10_49609037_49672942	49647740	TTTCCTTC others(17): Show TTTCCTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00544.hp2 HG00642.hp2 others(65): Show HG00280.hp1 HG00544.hp2 HG00642.hp2 HG00733.hp2 HG00741.hp2 HG01167.hp1 HG01169.hp1 HG01257.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp2 HG01934.hp2 HG02056.hp1 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02155.hp2 HG02523.hp2 HG02809.hp1 HG02809.hp2 HG02976.hp1 HG03831.hp2 NA18943.hp2 NA18946.hp2 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18949.hp2 NA18952.hp1 NA18955.hp2 NA18960.hp1 NA18960.hp2 NA18965.hp1 NA18966.hp1 NA18968.hp1 NA18973.hp1 NA18983.hp1 NA18988.hp1 NA18990.hp2 NA18994.hp2 NA18995.hp2 NA18998.hp1 NA18998.hp2 NA18999.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19002.hp2 NA19007.hp1 NA19009.hp1 NA19009.hp2 NA19030.hp1 NA19060.hp1 NA19060.hp2 NA19068.hp1 NA19076.hp1 NA19080.hp1 NA19081.hp1 NA19084.hp1 NA19088.hp1 NA19090.hp1 NA19240.hp2 NA20129.hp1 NA20805.hp1 NA20805.hp2 NA21309.hp2	a0001 a0002 a0003 others(4): Show a0001 a0002 a0003 a0007 a0008 a0011 a0013	a0001c0001 a0001c0005 a0002c0002 others(8): Show a0001c0001 a0001c0005 a0002c0002 a0002c0012 a0003c0004 a0003c0006 a0003c0007 a0007c0024 a0008c0038 a0011c0033 a0013c0029	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0014 a0001c0001t0016 a0001c0005t0009 a0002c0002t0002 a0002c0002t0007 a0002c0012t0009 a0003c0004t0001 a0003c0006t0005 a0003c0007t0003 a0007c0024t0009 a0008c0038t0004 a0011c0033t0009 a0013c0029t0009	a0001c0001t0001g0048 a0001c0001t0001g0057 a0001c0001t0001g0062 others(58): Show a0001c0001t0001g0048 a0001c0001t0001g0057 a0001c0001t0001g0062 a0001c0001t0001g0066 a0001c0001t0001g0224 a0001c0001t0001g0302 a0001c0001t0001g0359 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0194 a0001c0001t0002g0203 a0001c0001t0002g0263 a0001c0001t0002g0273 a0001c0001t0003g0053 a0001c0001t0003g0065 a0001c0001t0003g0277 a0001c0001t0004g0313 a0001c0001t0007g0181 a0001c0001t0007g0236 a0001c0001t0007g0240 a0001c0001t0008g0001 a0001c0001t0008g0201 a0001c0001t0008g0211 a0001c0001t0008g0266 a0001c0001t0014g0281 a0001c0001t0016g0219 a0001c0005t0009g0186 a0001c0005t0009g0193 a0001c0005t0009g0249 a0001c0005t0009g0252 a0001c0005t0009g0265 a0001c0005t0009g0272 a0002c0002t0002g0002 a0002c0002t0002g0009 a0002c0002t0002g0011 a0002c0002t0002g0097 a0002c0002t0002g0103 a0002c0002t0002g0107 a0002c0002t0002g0379 a0002c0002t0007g0070 a0002c0002t0007g0091 a0002c0002t0007g0106 a0002c0002t0007g0363 a0002c0002t0007g0381 a0002c0012t0009g0077 a0003c0004t0001g0014 a0003c0004t0001g0147 a0003c0006t0005g0134 a0003c0006t0005g0146 a0003c0006t0005g0148 a0003c0006t0005g0149 a0003c0006t0005g0152 a0003c0006t0005g0157 a0003c0006t0005g0161 a0003c0007t0003g0122 a0003c0007t0003g0125 a0003c0007t0003g0158 a0007c0024t0009g0101 a0008c0038t0004g0233 a0011c0033t0009g0177 a0013c0029t0009g0251	68	418	0.1627	-24	c.128 others(41): Show c.1282-720_1282-697delCCTTCCTTCCTTCCTTCCTTCCTT	CHAT	ENSG00000070748.19	transcript	ENST00000337653.7	protein_coding	8/14		INFO_REALIGN_3_PRIME	chr10	TogoVar
CHAT_chr10_49609037_49672942	49647787	CCTTCCTT others(17): Show CCTTCCTTCCTTCCTTCCTTCCTTT	C C	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG02145.hp1 HG02257.hp2 others(9): Show HG01167.hp2 HG02145.hp1 HG02257.hp2 HG02451.hp2 HG02818.hp1 HG02896.hp1 HG03041.hp1 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03453.hp2 HG03540.hp1	a0001 a0001	a0001c0010 a0001c0017 a0001c0028 a0001c0010 a0001c0017 a0001c0028	a0001c0010t0003 a0001c0010t0008 a0001c0017t0003 others(2): Show a0001c0010t0003 a0001c0010t0008 a0001c0017t0003 a0001c0017t0004 a0001c0028t0005	a0001c0010t0003g0044 a0001c0010t0003g0045 a0001c0010t0003g0223 others(9): Show a0001c0010t0003g0044 a0001c0010t0003g0045 a0001c0010t0003g0223 a0001c0010t0003g0257 a0001c0010t0003g0258 a0001c0010t0003g0259 a0001c0010t0003g0260 a0001c0010t0003g0262 a0001c0010t0008g0268 a0001c0017t0003g0256 a0001c0017t0004g0228 a0001c0028t0005g0370	12	418	0.0287	-24	c.128 others(41): Show c.1282-719_1282-696delCTTCCTTCCTTCCTTCCTTCCTTT	CHAT	ENSG00000070748.19	transcript	ENST00000337653.7	protein_coding	8/14			chr10	TogoVar
CHCHD6_chr3_126699240_126965420	126861711	GACCATCA others(17): Show GACCATCACCACCTCCCCCTTCACT	G G	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02055.hp1 HG01884.hp2 HG02055.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0028 a0003c0004t0001g0029 a0003c0004t0001g0028 a0003c0004t0001g0029	2	216	0.0093	-24	c.495 others(41): Show c.495+9001_495+9024delTCACTACCATCACCACCTCCCCCT	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126861731	TCACTACC others(17): Show TCACTACCATCACCACCTCCCCCTC	T T	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG03540.hp2 HG01167.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0196 a0001c0001t0001g0197	2	216	0.0093	-24	c.495 others(41): Show c.495+9029_495+9052delTACCATCACCACCTCCCCCTCCAC	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126861801	CTCCTCCA others(17): Show CTCCTCCACCATCACCACCTCCCCT	C C	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	216	0.0046	-24	c.495 others(41): Show c.495+9095_495+9118delTTCCTCCACCATCACCACCTCCCC	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126861825	TTCCTCCA others(17): Show TTCCTCCACCATCACCACCTCCCCC	T T	intron_variant intron_variant	MODIFIER	HG02155.hp2 NA18980.hp2 HG02155.hp2 NA18980.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0055 a0002c0002t0001g0056 a0002c0002t0001g0055 a0002c0002t0001g0056	2	216	0.0093	-24	c.495 others(41): Show c.495+9147_495+9170delTCCACCATCACCACCTCCCCCTCC	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126862114	ACCACCAT others(17): Show ACCACCATCACCACCTCCCCCTCCT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG00280.hp2 others(118): Show HG00140.hp1 HG00280.hp1 HG00280.hp2 HG00323.hp1 HG00323.hp2 HG00408.hp2 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00735.hp1 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01255.hp1 HG01255.hp2 HG01258.hp1 HG01346.hp2 HG01361.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01496.hp2 HG01884.hp2 HG01928.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp2 HG02055.hp1 HG02055.hp2 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02148.hp1 HG02148.hp2 HG02155.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02300.hp2 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02647.hp2 HG02683.hp2 HG02717.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG02896.hp1 HG02897.hp2 HG02965.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp1 HG03704.hp1 HG03710.hp2 HG03942.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp2 NA18612.hp1 NA18906.hp1 NA18939.hp1 NA18943.hp1 NA18945.hp1 NA18954.hp1 NA18960.hp1 NA18962.hp2 NA18971.hp1 NA18971.hp2 NA18980.hp2 NA18983.hp2 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA19000.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19088.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20905.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0006 a0007	a0001c0001 a0001c0003 a0002c0002 others(4): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0004c0007 a0006c0008 a0007c0005	a0001c0001t0001 a0001c0001t0003 a0001c0003t0001 others(6): Show a0001c0001t0001 a0001c0001t0003 a0001c0003t0001 a0002c0002t0001 a0002c0002t0002 a0003c0004t0001 a0004c0007t0004 a0006c0008t0002 a0007c0005t0001	a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 others(118): Show a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0110 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0132 a0001c0001t0001g0134 a0001c0001t0001g0141 a0001c0001t0001g0150 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0158 a0001c0001t0001g0171 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0215 a0001c0001t0003g0173 a0001c0001t0003g0179 a0001c0003t0001g0107 a0001c0003t0001g0108 a0001c0003t0001g0109 a0001c0003t0001g0111 a0002c0002t0001g0002 a0002c0002t0001g0003 a0002c0002t0001g0004 a0002c0002t0001g0006 a0002c0002t0001g0007 a0002c0002t0001g0008 a0002c0002t0001g0009 a0002c0002t0001g0010 a0002c0002t0001g0011 a0002c0002t0001g0012 a0002c0002t0001g0013 a0002c0002t0001g0014 a0002c0002t0001g0015 a0002c0002t0001g0016 a0002c0002t0001g0019 a0002c0002t0001g0020 a0002c0002t0001g0021 a0002c0002t0001g0022 a0002c0002t0001g0023 a0002c0002t0001g0025 a0002c0002t0001g0026 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0032 a0002c0002t0001g0033 a0002c0002t0001g0034 a0002c0002t0001g0035 a0002c0002t0001g0036 a0002c0002t0001g0037 a0002c0002t0001g0038 a0002c0002t0001g0039 a0002c0002t0001g0041 a0002c0002t0001g0042 a0002c0002t0001g0043 a0002c0002t0001g0044 a0002c0002t0001g0045 a0002c0002t0001g0046 a0002c0002t0001g0053 a0002c0002t0001g0054 a0002c0002t0001g0055 a0002c0002t0001g0056 a0002c0002t0001g0057 a0002c0002t0001g0058 a0002c0002t0001g0059 a0002c0002t0001g0060 a0002c0002t0001g0061 a0002c0002t0001g0062 a0002c0002t0001g0064 a0002c0002t0001g0066 a0002c0002t0001g0067 a0002c0002t0001g0068 a0002c0002t0001g0069 a0002c0002t0001g0070 a0002c0002t0001g0071 a0002c0002t0001g0072 a0002c0002t0001g0073 a0002c0002t0001g0074 a0002c0002t0001g0075 a0002c0002t0001g0076 a0002c0002t0001g0078 a0002c0002t0001g0079 a0002c0002t0001g0080 a0002c0002t0001g0081 a0002c0002t0002g0094 a0002c0002t0002g0095 a0002c0002t0002g0096 a0002c0002t0002g0097 a0003c0004t0001g0028 a0003c0004t0001g0029 a0004c0007t0004g0216 a0006c0008t0002g0098 a0007c0005t0001g0051	121	216	0.5602	-24	c.495 others(41): Show c.495+9426_495+9449delCCCTCCTCCACCATCACCACCTCC	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHCHD6_chr3_126699240_126965420	126864579	TCTCCACC others(17): Show TCTCCACCTCCACCACCTCCTTCTC	T T	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp2 HG02965.hp1 others(1): Show HG02280.hp2 HG02615.hp2 HG02965.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0112 a0001c0001t0001g0113 others(1): Show a0001c0001t0001g0088 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114	4	216	0.0185	-24	c.495 others(43): Show c.495+11881_495+11904delTCCACCACCTCCTTCTCCTCCACC	CHCHD6	ENSG00000159685.11	transcript	ENST00000290913.8	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHD2_chr15_92895324_93032996	92993883	GGCTGCAG others(17): Show GGCTGCAGTGAGTTGAGATCATGCC	G G	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0239 a0001c0002t0001g0239	1	306	0.0033	-24	c.359 others(41): Show c.3595+910_3595+933delGCTGCAGTGAGTTGAGATCATGCC	CHD2	ENSG00000173575.24	transcript	ENST00000394196.9	protein_coding	28/38		INFO_REALIGN_3_PRIME	chr15	TogoVar
CHD9_chr16_53049991_53332497	53108511	TATAGATA others(17): Show TATAGATAGATAGATAGATAGATAG	T T	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02897.hp1 HG02922.hp2 others(4): Show HG02615.hp2 HG02897.hp1 HG02922.hp2 HG02976.hp2 HG03195.hp2 NA19240.hp1 NA20300.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0004	a0001c0005t0004g0231 a0001c0005t0004g0232 a0001c0005t0004g0233 others(4): Show a0001c0005t0004g0231 a0001c0005t0004g0232 a0001c0005t0004g0233 a0001c0005t0004g0234 a0001c0005t0004g0235 a0001c0005t0004g0236 a0001c0005t0004g0238	7	238	0.0294	-24	c.-16 others(45): Show c.-164-47388_-164-47365delAGATAGATAGATAGATAGATAGAT	CHD9	ENSG00000177200.18	transcript	ENST00000447540.6	protein_coding	1/38		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHD9_chr16_53049991_53332497	53217912	TTTTCTTT others(17): Show TTTTCTTTCTTTCTTTCTTTCTTTC	T T	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00323.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0129 a0002c0002t0001g0129	1	238	0.0042	-24	c.178 others(43): Show c.1785-4708_1785-4685delCTTTCTTTCTTTCTTTCTTTCTTT	CHD9	ENSG00000177200.18	transcript	ENST00000447540.6	protein_coding	3/38		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHD9_chr16_53049991_53332497	53287815	TGTGTCTT others(17): Show TGTGTCTTGGGCTCTTCTGGCTAGA	T T	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0091	1	238	0.0042	-24	c.519 others(41): Show c.5190-140_5190-117delTGTCTTGGGCTCTTCTGGCTAGAG	CHD9	ENSG00000177200.18	transcript	ENST00000447540.6	protein_coding	26/38		INFO_REALIGN_3_PRIME	chr16	TogoVar
CHGB_chr20_5906510_5930353	5926078	TATATATA others(17): Show TATATATATATATATATATATATAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18957.hp2 NA18997.hp1 NA20129.hp2 NA18957.hp2 NA18997.hp1 NA20129.hp2	a0004 a0006 a0004 a0006	a0004c0004 a0006c0006 a0004c0004 a0006c0006	a0004c0004t0001 a0006c0006t0002 a0004c0004t0001 a0006c0006t0002	a0004c0004t0001g0046 a0006c0006t0002g0008 a0006c0006t0002g0090 a0004c0004t0001g0046 a0006c0006t0002g0008 a0006c0006t0002g0090	3	440	0.0068	-24	c.10 others(35): Show c.1030_*1053delATATATATATATATATATATATAC	CHGB	ENSG00000089199.10	transcript	ENST00000378961.9	protein_coding		726		chr20	TogoVar
CHGB_chr20_5906510_5930353	5926100	TACATATA others(17): Show TACATATATATATATATATATATAG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0002 a0006c0006t0002	a0006c0006t0002g0011 a0006c0006t0002g0011	1	440	0.0023	-24	c.10 others(35): Show c.1052_*1075delACATATATATATATATATATATAG	CHGB	ENSG00000089199.10	transcript	ENST00000378961.9	protein_coding		748		chr20	TogoVar
CHL1_chr3_191763_414417	314329	GTATATAT others(17): Show GTATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02451.hp1 HG03486.hp1 HG00639.hp2 HG02451.hp1 HG03486.hp1	a0001 a0003 a0020 a0001 a0003 a0020	a0001c0001 a0003c0003 a0020c0023 a0001c0001 a0003c0003 a0020c0023	a0001c0001t0001 a0003c0003t0058 a0020c0023t0017 a0001c0001t0001 a0003c0003t0058 a0020c0023t0017	a0001c0001t0001g0277 a0003c0003t0058g0208 a0020c0023t0017g0287 a0001c0001t0001g0277 a0003c0003t0058g0208 a0020c0023t0017g0287	3	290	0.0103	-24	c.-94 others(41): Show c.-94-5336_-94-5313delATATATATATATATATATATATAT	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	2/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHL1_chr3_191763_414417	373351	GTCAGGGT others(17): Show GTCAGGGTCAGGCCTGAAAAGGCAC	G G	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp1 HG03540.hp2 HG01167.hp1 HG01169.hp1 HG03540.hp2	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0012 a0006c0008t0024 a0006c0008t0012 a0006c0008t0024	a0006c0008t0012g0094 a0006c0008t0024g0252 a0006c0008t0024g0253 a0006c0008t0012g0094 a0006c0008t0024g0252 a0006c0008t0024g0253	3	290	0.0103	-24	c.175 others(43): Show c.1752-4449_1752-4426delAAGGCACTCAGGGTCAGGCCTGAA	CHL1	ENSG00000134121.10	transcript	ENST00000256509.7	protein_coding	15/27		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHM_chrX_85856180_86052558	85913332	AAAAGAAA others(17): Show AAAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01071.hp2 HG01168.hp2 others(1): Show HG01070.hp2 HG01071.hp2 HG01168.hp2 NA18940.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0070 others(1): Show a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0070 a0001c0002t0002g0073	4	245	0.0163	-24	c.116 others(43): Show c.1167-2018_1167-1995delCTTTCTTTCTTTCTTTCTTTCTTT	CHM	ENSG00000188419.14	transcript	ENST00000357749.7	protein_coding	8/14			chrX	TogoVar
CHN1_chr2_174793809_175010381	174807446	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03654.hp2 NA18982.hp2 HG03516.hp2 HG03654.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0198 a0001c0001t0001g0206 a0001c0001t0006g0027 a0001c0001t0001g0198 a0001c0001t0001g0206 a0001c0001t0006g0027	3	276	0.0109	-24	c.110 others(43): Show c.1102+1435_1102+1458delCACACACACACACACACACACACA	CHN1	ENSG00000128656.15	transcript	ENST00000409900.9	protein_coding	11/12			chr2	TogoVar
CHN2_chr7_29189775_29519328	29273366	TATATATA others(17): Show TATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG03209.hp1 HG03471.hp2 others(2): Show HG00609.hp1 HG03209.hp1 HG03471.hp2 NA18970.hp2 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0012 others(1): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0012 a0001c0001t0023	a0001c0001t0003g0111 a0001c0001t0003g0200 a0001c0001t0006g0217 others(2): Show a0001c0001t0003g0111 a0001c0001t0003g0200 a0001c0001t0006g0217 a0001c0001t0012g0172 a0001c0001t0023g0206	5	232	0.0216	-24	c.49+ others(41): Show c.49+78378_49+78401delTATATATATATATATATATATACA	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29405164	TACACACA others(17): Show TACACACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00558.hp2 HG00597.hp1 others(27): Show HG00438.hp1 HG00558.hp2 HG00597.hp1 HG00673.hp2 HG01167.hp1 HG01257.hp2 HG02074.hp1 HG02109.hp2 HG02129.hp1 HG02273.hp2 HG03017.hp1 HG03017.hp2 HG03225.hp2 HG03239.hp2 HG03579.hp1 HG03704.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp2 HG04228.hp2 NA18970.hp2 NA18982.hp1 NA18986.hp1 NA19005.hp1 NA19060.hp2 NA19063.hp1 NA19079.hp2 NA19082.hp1 NA19085.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 others(1): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(12): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0002t0002 a0001c0002t0004 a0001c0002t0010 a0002c0003t0004 a0002c0003t0021 a0002c0004t0001 a0002c0004t0005 a0002c0004t0007	a0001c0001t0001g0183 a0001c0001t0001g0224 a0001c0001t0003g0014 others(27): Show a0001c0001t0001g0183 a0001c0001t0001g0224 a0001c0001t0003g0014 a0001c0001t0003g0057 a0001c0001t0003g0111 a0001c0001t0003g0143 a0001c0001t0005g0018 a0001c0001t0005g0028 a0001c0001t0005g0127 a0001c0001t0005g0133 a0001c0001t0006g0145 a0001c0001t0008g0139 a0001c0001t0009g0091 a0001c0001t0009g0158 a0001c0001t0009g0232 a0001c0001t0010g0125 a0001c0002t0002g0027 a0001c0002t0002g0105 a0001c0002t0002g0189 a0001c0002t0004g0169 a0001c0002t0004g0199 a0001c0002t0010g0062 a0002c0003t0004g0124 a0002c0003t0021g0112 a0002c0004t0001g0038 a0002c0004t0001g0059 a0002c0004t0005g0202 a0002c0004t0007g0084 a0002c0004t0007g0094 a0002c0004t0007g0157	30	232	0.1293	-24	c.576 others(41): Show c.576+4371_576+4394delACACACACACACACACACACACAC	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHN2_chr7_29189775_29519328	29482797	CTTTTTTT others(17): Show CTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA19074.hp1 NA19074.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0095 a0001c0002t0004g0095	1	232	0.0043	-24	c.654 others(41): Show c.654+2460_654+2483delTTTTTTTTTTTTTTTTTTTTTTTT	CHN2	ENSG00000106069.26	transcript	ENST00000222792.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHP2_chr16_23750026_23763935	23750869	TTTTCTTT others(17): Show TTTTCTTTCTTTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	392	0.0026	-24	c.-41 others(35): Show c.-4180_-4157delTTTCTTTCTTTCTTTCTTTCTTTC	CHP2	ENSG00000166869.3	transcript	ENST00000300113.3	protein_coding		4156		chr16	TogoVar
CHRDL1_chrX_110668856_110800817	110669056	ATATATAT others(17): Show ATATATATATATTTATATATATATT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG01433.hp1 HG01515.hp1 others(6): Show HG01167.hp1 HG01433.hp1 HG01515.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG03098.hp1 HG06807.hp1 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 others(1): Show a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 a0001c0002t0007	a0001c0002t0003g0029 a0001c0002t0003g0078 a0001c0002t0004g0032 others(6): Show a0001c0002t0003g0029 a0001c0002t0003g0078 a0001c0002t0004g0032 a0001c0002t0004g0049 a0001c0002t0004g0051 a0001c0002t0004g0053 a0001c0002t0006g0030 a0001c0002t0006g0150 a0001c0002t0007g0052	9	172	0.0523	-24	c.71 others(35): Show c.7151_*7174delAATATATATATAAATATATATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding		4799		chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110690015	ATATATCT others(17): Show ATATATCTGTATATCTATATATATC	A A	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0050 a0004c0005t0050	a0004c0005t0050g0072 a0004c0005t0050g0072	1	172	0.0058	-24	c.779 others(41): Show c.779-1236_779-1213delGATATATATAGATATACAGATATA	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	8/11			chrX	TogoVar
CHRDL1_chrX_110668856_110800817	110697814	CCACACAC others(17): Show CCACACACACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03579.hp1 HG02630.hp1 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0011 a0001c0002t0006 a0001c0002t0011	a0001c0002t0006g0041 a0001c0002t0011g0042 a0001c0002t0006g0041 a0001c0002t0011g0042	2	172	0.0116	-24	c.609 others(41): Show c.609+2816_609+2839delTGTGTGTGTGTGTGTGTGTGTGTG	CHRDL1	ENSG00000101938.15	transcript	ENST00000372042.6	protein_coding	7/11			chrX	TogoVar
CHRD_chr3_184375054_184394829	184388387	GCATCCAT others(17): Show GCATCCATCCATCCATCCATCCATC	G G	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0011 a0011	a0011c0031 a0011c0031	a0011c0031t0001 a0011c0031t0001	a0011c0031t0001g0166 a0011c0031t0001g0166	1	428	0.0023	-24	c.255 others(41): Show c.2555-178_2555-155delATCCATCCATCCATCCATCCATCC	CHRD	ENSG00000090539.16	transcript	ENST00000204604.6	protein_coding	20/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CHRFAM7A_chr15_30355566_30398540	30393863	GTGTGTGT others(17): Show GTGTGTGTGTGTGTGTGTGTGTCTA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 HG03579.hp1 HG03486.hp2 HG03579.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0010 a0002c0008t0017 a0002c0008t0010 a0002c0008t0017	a0002c0008t0010g0119 a0002c0008t0017g0127 a0002c0008t0010g0119 a0002c0008t0017g0127	2	133	0.0150	-24	c.-79 others(33): Show c.-792_-769delTAGACACACACACACACACACACA	CHRFAM7A	ENSG00000166664.15	transcript	ENST00000299847.7	protein_coding		324		chr15	TogoVar
CHRM2_chr7_136863652_137025213	136867625	TTTGAGAG others(17): Show TTTGAGAGAGATATATATATATATA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01167.hp1 HG01168.hp1 HG01169.hp1 others(18): Show HG01167.hp1 HG01168.hp1 HG01169.hp1 HG01257.hp1 HG01433.hp2 HG01516.hp1 HG01891.hp1 HG01952.hp2 HG02148.hp1 HG02273.hp1 HG02559.hp1 HG03139.hp2 HG03492.hp1 HG03834.hp1 HG04115.hp1 HG04228.hp2 NA18945.hp1 NA18980.hp1 NA19043.hp1 NA19054.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 others(6): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0013 a0001c0001t0024 a0001c0001t0041 a0001c0001t0050 a0001c0010t0004	a0001c0001t0002g0092 a0001c0001t0004g0075 a0001c0001t0004g0076 others(18): Show a0001c0001t0002g0092 a0001c0001t0004g0075 a0001c0001t0004g0076 a0001c0001t0004g0077 a0001c0001t0004g0080 a0001c0001t0004g0082 a0001c0001t0004g0090 a0001c0001t0007g0088 a0001c0001t0008g0073 a0001c0001t0008g0074 a0001c0001t0008g0083 a0001c0001t0008g0084 a0001c0001t0008g0086 a0001c0001t0008g0087 a0001c0001t0008g0089 a0001c0001t0008g0091 a0001c0001t0013g0068 a0001c0001t0024g0067 a0001c0001t0041g0318 a0001c0001t0050g0085 a0001c0010t0004g0081	21	320	0.0656	-24	c.-16 others(35): Show c.-1649_-1626delTTGAGAGAGATATATATATATATA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding		1026		chr7	TogoVar
CHRM2_chr7_136863652_137025213	136938915	CAAAAAAA others(17): Show CAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02622.hp1 NA18964.hp1 HG02622.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0021 a0001c0001t0001 a0001c0001t0021	a0001c0001t0001g0157 a0001c0001t0021g0050 a0001c0001t0001g0157 a0001c0001t0021g0050	2	320	0.0063	-24	c.-12 others(45): Show c.-124-53247_-124-53224delAAAAAAAAAAAAAAAAAAAAAAAA	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM2_chr7_136863652_137025213	137003473	TACACACA others(17): Show TACACACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00733.hp2 HG00735.hp2 others(45): Show HG00099.hp2 HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01070.hp2 HG01074.hp1 HG01074.hp2 HG01175.hp2 HG01243.hp2 HG01257.hp1 HG01361.hp2 HG01891.hp1 HG01943.hp1 HG02055.hp2 HG02109.hp2 HG02145.hp2 HG02148.hp1 HG02280.hp1 HG02559.hp1 HG02735.hp2 HG02809.hp1 HG02818.hp2 HG02895.hp2 HG02896.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03486.hp1 HG03516.hp2 HG03579.hp2 HG03654.hp1 HG04115.hp1 HG04115.hp2 HG04199.hp1 HG06807.hp1 NA18906.hp1 NA18945.hp1 NA18954.hp1 NA18973.hp2 NA18980.hp1 NA18982.hp1 NA18995.hp1 NA19043.hp1 NA19043.hp2 NA19054.hp1 NA19075.hp2 NA20129.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0010 a0001c0001 a0001c0003 a0001c0010	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(18): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0013 a0001c0001t0014 a0001c0001t0016 a0001c0001t0024 a0001c0001t0025 a0001c0001t0031 a0001c0001t0033 a0001c0001t0036 a0001c0001t0039 a0001c0001t0049 a0001c0001t0050 a0001c0001t0055 a0001c0001t0061 a0001c0001t0062 a0001c0003t0023 a0001c0010t0004	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(45): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0284 a0001c0001t0004g0080 a0001c0001t0005g0135 a0001c0001t0007g0088 a0001c0001t0007g0132 a0001c0001t0007g0141 a0001c0001t0007g0204 a0001c0001t0007g0287 a0001c0001t0007g0288 a0001c0001t0007g0300 a0001c0001t0007g0301 a0001c0001t0007g0302 a0001c0001t0007g0305 a0001c0001t0007g0316 a0001c0001t0008g0074 a0001c0001t0008g0086 a0001c0001t0008g0089 a0001c0001t0008g0091 a0001c0001t0008g0131 a0001c0001t0008g0272 a0001c0001t0013g0068 a0001c0001t0013g0069 a0001c0001t0013g0070 a0001c0001t0013g0247 a0001c0001t0014g0052 a0001c0001t0014g0093 a0001c0001t0016g0255 a0001c0001t0024g0067 a0001c0001t0024g0221 a0001c0001t0025g0094 a0001c0001t0025g0123 a0001c0001t0031g0010 a0001c0001t0031g0096 a0001c0001t0033g0103 a0001c0001t0036g0056 a0001c0001t0036g0059 a0001c0001t0039g0317 a0001c0001t0049g0117 a0001c0001t0050g0085 a0001c0001t0055g0261 a0001c0001t0061g0155 a0001c0001t0062g0309 a0001c0003t0023g0218 a0001c0010t0004g0081	48	320	0.1500	-24	c.-47 others(43): Show c.-47+11250_-47+11273delACACACACACACACACACACACAC	CHRM2	ENSG00000181072.12	transcript	ENST00000680005.1	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr7	TogoVar
CHRM3_chr1_239381568_239920450	239383397	TTCTTTCT others(17): Show TTCTTTCTTTCTTTCTTTCTTTCTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0048 a0001c0005t0048	a0001c0005t0048g0081 a0001c0005t0048g0081	1	116	0.0086	-24	c.-43 others(35): Show c.-4350_-4327delTCTTTCTTTCTTTCTTTCTTTCTC	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		3170		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239385936	AGTGTGTG others(17): Show AGTGTGTGTGTGTGTGTGTGTGTGT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0107	1	116	0.0086	-24	c.-18 others(35): Show c.-1811_-1788delGTGTGTGTGTGTGTGTGTGTGTGT	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding		631		chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404396	GAAAGAAA others(17): Show GAAAGAAAGAAAGAAAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0027 a0001c0001t0061g0027	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17171_-521+17194delAAGAAAGAAAGAAAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404398	AAGAAAGA others(17): Show AAGAAAGAAAGAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0095 a0001c0001t0014g0095	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17173_-521+17196delGAAAGAAAGAAAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404402	AAGAAAGA others(17): Show AAGAAAGAAAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0033 a0001c0001t0015g0033	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17177_-521+17200delGAAAGAAAAAGAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404404	GAAAGAAA others(17): Show GAAAGAAAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0116 a0001c0001t0031g0116	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17179_-521+17202delAAGAAAAAGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404406	AAGAAAAA others(17): Show AAGAAAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0032 a0001c0001t0038g0032	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17181_-521+17204delGAAAAAGAAAGAAAGAAAGAAAGA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404408	GAAAAAGA others(17): Show GAAAAAGAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02735.hp2 HG02040.hp1 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0050 a0001c0001t0022 a0001c0001t0050	a0001c0001t0022g0008 a0001c0001t0050g0015 a0001c0001t0022g0008 a0001c0001t0050g0015	2	116	0.0172	-24	c.-52 others(45): Show c.-521+17183_-521+17206delAAAAGAAAGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRM3_chr1_239381568_239920450	239404410	AAAAGAAA others(17): Show AAAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18939.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0048 a0001c0001t0002g0048	1	116	0.0086	-24	c.-52 others(45): Show c.-521+17219_-521+17242delGAAAGAAAGAAAGAAAGAAAGAAA	CHRM3	ENSG00000133019.12	transcript	ENST00000676153.1	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr1	TogoVar
CHRNA3_chr15_78590309_78625996	78625748	CAGAACAC others(17): Show CAGAACACCTGGAAATCCTGCTGTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0210 a0001c0001t0011g0210	1	410	0.0024	-24	c.-49 others(35): Show c.-4978_-4955delAACAGCAGGATTTCCAGGTGTTCT	CHRNA3	ENSG00000080644.16	transcript	ENST00000326828.6	protein_coding		4753		chr15	TogoVar
CHRNB1_chr17_7440061_7462710	7446303	TTGTGTGT others(17): Show TTGTGTGTGTGTGTGTGTGTGTGTC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02717.hp1 HG02738.hp1 others(2): Show HG01884.hp1 HG02717.hp1 HG02738.hp1 HG03209.hp2 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0033 a0001c0001t0001g0034 a0002c0002t0001g0266 a0001c0001t0001g0033 a0001c0001t0001g0034 a0002c0002t0001g0266	5	368	0.0136	-24	c.243 others(39): Show c.243+214_243+237delCTGTGTGTGTGTGTGTGTGTGTGT	CHRNB1	ENSG00000170175.11	transcript	ENST00000306071.7	protein_coding	3/10		INFO_REALIGN_3_PRIME	chr17	TogoVar
CHST11_chr12_104451948_104767014	104610043	CTGTGTGT others(17): Show CTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02572.hp2 HG02615.hp1 HG01243.hp1 HG02572.hp2 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0033 a0001c0001t0054 a0001c0001t0002 a0001c0001t0033 a0001c0001t0054	a0001c0001t0002g0204 a0001c0001t0033g0055 a0001c0001t0054g0003 a0001c0001t0002g0204 a0001c0001t0033g0055 a0001c0001t0054g0003	3	240	0.0125	-24	c.204 others(41): Show c.204+8082_204+8105delGTGTGTGTGTGTGTGTGTGTGTGT	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST11_chr12_104451948_104767014	104610073	GTGTGTGT others(17): Show GTGTGTGTGTGTGTGTGTGTGTGTC	G G	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0187 a0001c0001t0043g0187	1	240	0.0042	-24	c.204 others(41): Show c.204+8087_204+8110delTGTGTGTGTGTGTGTGTGTCTGTG	CHST11	ENSG00000171310.11	transcript	ENST00000303694.6	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr12	TogoVar
CHST15_chr10_124002668_124098598	124034612	GACCCTGG others(17): Show GACCCTGGCTTCACCCCTGATAGGT	G G	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02647.hp2 HG03130.hp2 others(1): Show HG02572.hp1 HG02647.hp2 HG03130.hp2 HG03486.hp1	a0001 a0007 a0001 a0007	a0001c0007 a0001c0018 a0007c0020 a0001c0007 a0001c0018 a0007c0020	a0001c0007t0002 a0001c0007t0004 a0001c0018t0015 others(1): Show a0001c0007t0002 a0001c0007t0004 a0001c0018t0015 a0007c0020t0002	a0001c0007t0002g0227 a0001c0007t0004g0294 a0001c0018t0015g0015 others(1): Show a0001c0007t0002g0227 a0001c0007t0004g0294 a0001c0018t0015g0015 a0007c0020t0002g0247	4	392	0.0102	-24	c.119 others(43): Show c.1190+3879_1190+3902delACCTATCAGGGGTGAAGCCAGGGT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124034712	CCCCGGCT others(17): Show CCCCGGCTCCACCCCCTAACAGGGA	C C	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0306 a0001c0001t0004g0306	1	392	0.0026	-24	c.119 others(43): Show c.1190+3779_1190+3802delTCCCTGTTAGGGGGTGGAGCCGGG	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124034782	AGGGACGC others(17): Show AGGGACGCCGGCTCCGCCCCTAACG	A A	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02647.hp2 HG03486.hp1 HG02572.hp1 HG02647.hp2 HG03486.hp1	a0001 a0007 a0001 a0007	a0001c0007 a0007c0020 a0001c0007 a0007c0020	a0001c0007t0002 a0001c0007t0004 a0007c0020t0002 a0001c0007t0002 a0001c0007t0004 a0007c0020t0002	a0001c0007t0002g0227 a0001c0007t0004g0294 a0007c0020t0002g0247 a0001c0007t0002g0227 a0001c0007t0004g0294 a0007c0020t0002g0247	3	392	0.0077	-24	c.119 others(43): Show c.1190+3709_1190+3732delCGTTAGGGGCGGAGCCGGCGTCCC	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124034994	CCCCCTAA others(17): Show CCCCCTAATAGGGACCCTGGCTCTA	C C	intron_variant intron_variant	MODIFIER	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0313 a0001c0001t0005g0313	1	392	0.0026	-24	c.119 others(43): Show c.1190+3497_1190+3520delTAGAGCCAGGGTCCCTATTAGGGG	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124035031	GACCCTGG others(17): Show GACCCTGGCTCTACCCCTGATAGGT	G G	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0113 a0001c0001t0024g0113	1	392	0.0026	-24	c.119 others(43): Show c.1190+3460_1190+3483delACCTATCAGGGGTAGAGCCAGGGT	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar
CHST15_chr10_124002668_124098598	124035167	CCCCCTAA others(17): Show CCCCCTAACGGGGACCCTGGTTCCA	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02055.hp2 HG02258.hp1 others(8): Show HG01109.hp1 HG02055.hp2 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02809.hp2 HG02922.hp1 HG03130.hp2 HG03225.hp2 HG03540.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0018 a0001c0001 a0001c0003 a0001c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0013 a0001c0001t0037 a0001c0003t0002 a0001c0018t0015	a0001c0001t0001g0254 a0001c0001t0001g0368 a0001c0001t0002g0020 others(8): Show a0001c0001t0001g0254 a0001c0001t0001g0368 a0001c0001t0002g0020 a0001c0001t0008g0220 a0001c0001t0008g0235 a0001c0001t0008g0250 a0001c0001t0008g0252 a0001c0001t0013g0215 a0001c0001t0037g0374 a0001c0003t0002g0219 a0001c0018t0015g0015	11	392	0.0281	-24	c.119 others(43): Show c.1190+3324_1190+3347delTGGAACCAGGGTCCCCGTTAGGGG	CHST15	ENSG00000182022.18	transcript	ENST00000435907.6	protein_coding	5/7			chr10	TogoVar

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