Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FOXK2_chr17_82514732_82609602	82596369	CCCTCAGA others(17): Show CCCTCAGAGCTTGGTGTAGGGGGAG	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0018 a0001c0001t0052g0018	1	308	0.0033	-24	c.178 others(43): Show c.1787-4877_1787-4854delCTTGGTGTAGGGGGAGCCTCAGAG	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr17	TogoVar
FOXN3_chr14_89151177_89422233	89288651	GCTGTAAT others(17): Show GCTGTAATAGGCACTCTCTTTCTCT	G G	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG03471.hp2 NA18943.hp1 others(2): Show HG01978.hp2 HG03471.hp2 NA18943.hp1 NA18950.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0009 a0001c0001t0035 others(2): Show a0001c0001t0005 a0001c0001t0009 a0001c0001t0035 a0001c0001t0038 a0001c0001t0057	a0001c0001t0005g0108 a0001c0001t0009g0150 a0001c0001t0035g0009 others(2): Show a0001c0001t0005g0108 a0001c0001t0009g0150 a0001c0001t0035g0009 a0001c0001t0038g0012 a0001c0001t0057g0018	5	230	0.0217	-24	c.681 others(41): Show c.681-7661_681-7638delAGAGAAAGAGAGTGCCTATTACAG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288712	CTCTCTCT others(17): Show CTCTCTCTCTCTCTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0089 a0001c0001t0089	a0001c0001t0089g0170 a0001c0001t0089g0170	1	230	0.0044	-24	c.681 others(41): Show c.681-7722_681-7699delTATATATATATAGAGAGAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288718	CTCTCTCT others(17): Show CTCTCTCTATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0197 a0001c0001t0053g0197	1	230	0.0044	-24	c.681 others(41): Show c.681-7728_681-7705delTATATATATATATATATAGAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288720	CTCTCTAT others(17): Show CTCTCTATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18995.hp1 NA18964.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0025 a0001c0001t0001 a0001c0001t0025	a0001c0001t0001g0227 a0001c0001t0025g0228 a0001c0001t0001g0227 a0001c0001t0025g0228	2	230	0.0087	-24	c.681 others(41): Show c.681-7730_681-7707delTATATATATATATATATATAGAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89288722	CTCTATAT others(17): Show CTCTATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02165.hp1 NA18747.hp2 HG02165.hp1 NA18747.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0046 a0001c0001t0006 a0001c0001t0046	a0001c0001t0006g0157 a0001c0001t0046g0203 a0001c0001t0006g0157 a0001c0001t0046g0203	2	230	0.0087	-24	c.681 others(41): Show c.681-7732_681-7709delTATATATATATATATATATATAGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89306327	GACGCATG others(17): Show GACGCATGCACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0048	a0001c0001t0048g0038 a0001c0001t0048g0038	1	230	0.0044	-24	c.681 others(43): Show c.681-25337_681-25314delGTGTGTGTGTGTGTGTGCATGCGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360750	ACCACCAC others(17): Show ACCACCACCTCCACCACTACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG04228.hp1 HG02040.hp2 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0001 a0001c0001t0010	a0001c0001t0001g0204 a0001c0001t0010g0056 a0001c0001t0001g0204 a0001c0001t0010g0056	2	230	0.0087	-24	c.544 others(41): Show c.544-9966_544-9943delAGGTGGTAGTGGTGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360809	CACCTCCA others(17): Show CACCTCCACCACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0224 a0001c0001t0042g0224	1	230	0.0044	-24	c.544 others(43): Show c.544-10025_544-10002delAGTGGTGGAGGTGGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360828	ACCACTAC others(17): Show ACCACTACCACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02895.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0060 a0001c0002t0060	a0001c0002t0060g0114 a0001c0002t0060g0114	1	230	0.0044	-24	c.544 others(43): Show c.544-10044_544-10021delAGGTGGTGCTGGAGGTGGTAGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360963	AGCACCAC others(17): Show AGCACCACCTCCACCACTACCACCT	A A	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01123.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0096 a0001c0001t0005g0096	1	230	0.0044	-24	c.544 others(43): Show c.544-10179_544-10156delAGGTGGTAGTGGTGGAGGTGGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360967	CCACCTCC others(17): Show CCACCTCCACCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0224 a0001c0001t0042g0224	1	230	0.0044	-24	c.544 others(43): Show c.544-10183_544-10160delCTGGAGGTGGTAGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361042	CCACCACC others(17): Show CCACCACCTCCAGCACTACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0094 a0001c0001t0094	a0001c0001t0094g0034 a0001c0001t0094g0034	1	230	0.0044	-24	c.544 others(43): Show c.544-10258_544-10235delCTGGAGGTAGTGCTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361159	GCACTACC others(17): Show GCACTACCTCCAGCACCACCTCCAC	G G	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0157 a0001c0001t0006g0157	1	230	0.0044	-24	c.544 others(43): Show c.544-10375_544-10352delGTGGAGGTGGTGCTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361179	TCCACCAC others(17): Show TCCACCACCACCACCTCCAGCACCA	T T	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0156 a0001c0001t0041g0156	1	230	0.0044	-24	c.544 others(43): Show c.544-10395_544-10372delTGGTGCTGGAGGTGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361198	GCACCACC others(17): Show GCACCACCACCACCACCTCCACCAC	G G	intron_variant intron_variant	MODIFIER	NA19065.hp1 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0093 a0001c0001t0025g0093	1	230	0.0044	-24	c.544 others(43): Show c.544-10414_544-10391delGTGGTGGAGGTGGTGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361293	AGCACCAC others(17): Show AGCACCACCTCCACCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp2 HG02451.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0048 a0001c0001t0002 a0001c0001t0048	a0001c0001t0002g0044 a0001c0001t0048g0038 a0001c0001t0002g0044 a0001c0001t0048g0038	2	230	0.0087	-24	c.544 others(43): Show c.544-10509_544-10486delAGGTGGTGGTGGTGGAGGTGGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361332	ACCACCAC others(17): Show ACCACCACCACCTCCAGCACCACCT	A A	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0156 a0001c0001t0041g0156	1	230	0.0044	-24	c.544 others(43): Show c.544-10548_544-10525delAGGTGGTGCTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361523	CCACCTCC others(17): Show CCACCTCCACCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01255.hp2 HG01123.hp1 HG01255.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0012 a0001c0001t0005 a0001c0001t0012	a0001c0001t0005g0096 a0001c0001t0012g0107 a0001c0001t0005g0096 a0001c0001t0012g0107	2	230	0.0087	-24	c.544 others(43): Show c.544-10739_544-10716delCTGGAGGTGGTGGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361680	CACCTCCA others(17): Show CACCTCCACCACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03195.hp2 HG03041.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0011 a0001c0001t0002 a0001c0001t0011	a0001c0001t0002g0179 a0001c0001t0011g0209 a0001c0001t0002g0179 a0001c0001t0011g0209	2	230	0.0087	-24	c.544 others(43): Show c.544-10896_544-10873delAGTGGTGGAGGTGGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361695	CTCCACCA others(17): Show CTCCACCACTACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 NA18997.hp2 HG00140.hp2 NA18997.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0109 a0001c0001t0003g0194 a0001c0001t0001g0109 a0001c0001t0003g0194	2	230	0.0087	-24	c.544 others(43): Show c.544-10911_544-10888delAGTGCTGGAGGTGGTAGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361830	CTCCACCA others(17): Show CTCCACCACTACCACCTCCAGCACT	C C	intron_variant intron_variant	MODIFIER	HG02155.hp1 NA18999.hp1 HG02155.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0078 a0001c0001t0006 a0001c0001t0078	a0001c0001t0006g0078 a0001c0001t0078g0067 a0001c0001t0006g0078 a0001c0001t0078g0067	2	230	0.0087	-24	c.544 others(43): Show c.544-11046_544-11023delAGTGCTGGAGGTGGTAGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361834	ACCACTAC others(17): Show ACCACTACCACCTCCAGCACTACCT	A A	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0163 a0001c0001t0076g0163	1	230	0.0044	-24	c.544 others(43): Show c.544-11050_544-11027delAGGTAGTGCTGGAGGTGGTAGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361853	CTACCTCC others(17): Show CTACCTCCACCACCACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0173 a0001c0001t0014g0173	1	230	0.0044	-24	c.544 others(43): Show c.544-11069_544-11046delCTGGAGGTGGTGGTGGTGGAGGTA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361986	TACCACCT others(17): Show TACCACCTCCAGCACCACCTCCACC	T T	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	230	0.0044	-24	c.544 others(43): Show c.544-11202_544-11179delGGTGGAGGTGGTGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362081	CCACCTCC others(17): Show CCACCTCCACCACTACCACCTCCAG	C C	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0104 a0001c0001t0002g0104	1	230	0.0044	-24	c.544 others(43): Show c.544-11297_544-11274delCTGGAGGTGGTAGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362175	CACCTCCA others(17): Show CACCTCCACCACCACCTCCACCACT	C C	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0219 a0001c0001t0006g0219	1	230	0.0044	-24	c.544 others(43): Show c.544-11391_544-11368delAGTGGTGGAGGTGGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362191	TCCACCAC others(17): Show TCCACCACTACCACCTCCAGCACCA	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0002 a0001c0001t0031g0002	1	230	0.0044	-24	c.544 others(43): Show c.544-11407_544-11384delTGGTGCTGGAGGTGGTAGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362252	GCACCACC others(17): Show GCACCACCACCACCTCCTCCTCCTC	G G	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0087 a0001c0001t0004g0087	1	230	0.0044	-24	c.544 others(43): Show c.544-11468_544-11445delGAGGAGGAGGAGGTGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362602	ACCATCTC others(17): Show ACCATCTCTACGACCACCACCACCT	A A	intron_variant intron_variant	MODIFIER	NA18985.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0060 a0001c0001t0007g0060	1	230	0.0044	-24	c.544 others(43): Show c.544-11818_544-11795delAGGTGGTGGTGGTCGTAGAGATGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363947	AATATATA others(17): Show AATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	230	0.0044	-24	c.544 others(43): Show c.544-13163_544-13140delATATATATATATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89396523	GCTGGACT others(17): Show GCTGGACTGGAGCATCAAGAAGCCA	G G	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA18906.hp1 NA21309.hp2 HG02257.hp2 NA18906.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0028 a0001c0001t0065 a0001c0001t0001 a0001c0001t0028 a0001c0001t0065	a0001c0001t0001g0174 a0001c0001t0028g0202 a0001c0001t0065g0201 a0001c0001t0001g0174 a0001c0001t0028g0202 a0001c0001t0065g0201	3	230	0.0130	-24	c.543 others(43): Show c.543+15387_543+15410delTGGCTTCTTGATGCTCCAGTCCAG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109285144	TTGTGTGT others(17): Show TTGTGTGTGTGCGCATATTTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0122 a0001c0004t0001g0122	1	368	0.0027	-24	c.901 others(39): Show c.901+136_901+159delCACACAAATATGCGCACACACACA	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	8/9			chr12	TogoVar
FOXN4_chr12_109272978_109314284	109304221	GAGAAAGA others(17): Show GAGAAAGAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0143 a0001c0001t0001g0143	1	368	0.0027	-24	c.86+ others(39): Show c.86+3991_86+4014delTTCTTTCTTTCTTTCTTTCTTTCT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	2/9			chr12	TogoVar
FOXO1_chr13_40550667_40671641	40564945	GAGTCGGG others(17): Show GAGTCGGGGAACCCCGACATGGTGT	G G	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0264 a0001c0001t0004g0264	1	394	0.0025	-24	c.631 others(41): Show c.631-4109_631-4086delACACCATGTCGGGGTTCCCCGACT	FOXO1	ENSG00000150907.10	transcript	ENST00000379561.6	protein_coding	1/2			chr13	TogoVar
FOXO4_chrX_71090851_71108532	71094237	GAAGGAAG others(17): Show GAAGGAAGGAAGGAAGGAGAAAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp1 NA19030.hp2 HG02970.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	2	295	0.0068	-24	c.-22 others(35): Show c.-2291_-2268delAAGGAAGGAAGGAAGGAGAAAGAA	FOXO4	ENSG00000184481.17	transcript	ENST00000374259.8	protein_coding		1613		chrX	TogoVar
FOXO4_chrX_71090851_71108532	71094241	GAAGGAAG others(17): Show GAAGGAAGGAAGGAGAAAGAAAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01168.hp2 HG02109.hp2 HG02165.hp1 others(5): Show HG01168.hp2 HG02109.hp2 HG02165.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp1 HG03486.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0003g0003	8	295	0.0271	-24	c.-22 others(35): Show c.-2287_-2264delAAGGAAGGAAGGAGAAAGAAAGAA	FOXO4	ENSG00000184481.17	transcript	ENST00000374259.8	protein_coding		1609		chrX	TogoVar
FOXO4_chrX_71090851_71108532	71094249	GAAGGAGA others(17): Show GAAGGAGAAAGAAAGAAAGAAAGAA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00673.hp1 HG01109.hp1 HG01496.hp1 others(4): Show HG00673.hp1 HG01109.hp1 HG01496.hp1 HG01993.hp2 HG02148.hp1 NA18991.hp2 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0005 a0001c0001t0002g0002 a0001c0001t0001g0005 a0001c0001t0002g0002	7	295	0.0237	-24	c.-22 others(35): Show c.-2279_-2256delAAGGAGAAAGAAAGAAAGAAAGAA	FOXO4	ENSG00000184481.17	transcript	ENST00000374259.8	protein_coding		1601		chrX	TogoVar
FOXP1_chr3_70949708_71588728	70978339	CTCACCTA others(17): Show CTCACCTATAGGCTTTGATCGCCCA	C C	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0078 a0001c0001t0044g0078	1	96	0.0104	-24	c.114 others(41): Show c.1147-334_1147-311delTGGGCGATCAAAGCCTATAGGTGA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	14/20			chr3	TogoVar
FOXP3_chrX_49245438_49269710	49256220	AAGAGAGA others(17): Show AAGAGAGAGAGAGAGAGAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0090 a0001c0001t0001g0090	1	299	0.0033	-24	c.648 others(39): Show c.648-442_648-419delCTCTCTCTCTCTCTCTCTCTCTCT	FOXP3	ENSG00000049768.18	transcript	ENST00000376207.10	protein_coding	6/11			chrX	TogoVar
FOXQ1_chr6_1307098_1319758	1311648	GGTGTCCC others(17): Show GGTGTCCCCCTAGGGGAACTGTGGC	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0001 a0005c0007t0001	a0005c0007t0001g0000 a0005c0007t0001g0000	1	406	0.0025	-24	c.-10 others(35): Show c.-1056_-1033delGTGTCCCCCTAGGGGAACTGTGGC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		449		chr6	TogoVar
FOXR1_chr11_118966761_118986287	118983537	TTGTGTGT others(17): Show TTGTGTGTGTGTGTGTGTGTGTGTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG01069.hp2 HG01099.hp2 others(44): Show HG00280.hp2 HG01069.hp2 HG01099.hp2 HG01106.hp1 HG01175.hp1 HG01175.hp2 HG01517.hp2 HG01993.hp1 HG02015.hp2 HG02027.hp2 HG02056.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02559.hp1 HG02602.hp1 HG02698.hp2 HG03471.hp1 HG03490.hp1 HG03654.hp1 HG03669.hp1 HG03688.hp2 HG03834.hp1 HG04204.hp1 HG06807.hp1 NA18940.hp1 NA18944.hp2 NA18960.hp2 NA18963.hp2 NA18966.hp2 NA18969.hp2 NA18971.hp1 NA18972.hp1 NA18980.hp2 NA18985.hp2 NA18990.hp1 NA18993.hp1 NA19004.hp1 NA19005.hp2 NA19006.hp1 NA19010.hp1 NA19030.hp2 NA19058.hp2 NA19060.hp1 NA19091.hp2 NA19240.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0007 a0001c0001 a0001c0005 a0001c0007	a0001c0001t0001 a0001c0005t0001 a0001c0005t0003 others(1): Show a0001c0001t0001 a0001c0005t0001 a0001c0005t0003 a0001c0007t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 others(13): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0040 a0001c0001t0001g0043 a0001c0001t0001g0051 a0001c0001t0001g0071 a0001c0005t0001g0021 a0001c0005t0001g0081 a0001c0005t0003g0021 a0001c0007t0001g0042	47	430	0.1093	-24	c.23 others(35): Show c.2302_*2325delTGTGTGTGTGTGTGTGTGTGTGTG	FOXR1	ENSG00000176302.13	transcript	ENST00000317011.8	protein_coding		2251		chr11	TogoVar
FRAS1_chr4_78052323_78549269	78420879	CATATATA others(17): Show CATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00738.hp1 HG01071.hp1 others(10): Show HG00323.hp2 HG00738.hp1 HG01071.hp1 HG01099.hp1 HG02280.hp1 HG02738.hp1 HG03453.hp2 HG03471.hp2 HG03704.hp2 HG03710.hp2 HG03834.hp2 HG04199.hp2 homoSapiens_chm13v2.hp1	a0006 a0007 a0012 others(7): Show a0006 a0007 a0012 a0013 a0032 a0033 a0048 a0076 a0078 a0095	a0006c0016 a0007c0041 a0012c0046 others(8): Show a0006c0016 a0007c0041 a0012c0046 a0012c0055 a0013c0009 a0032c0036 a0033c0035 a0048c0060 a0076c0094 a0078c0093 a0095c0123	a0006c0016t0008 a0007c0041t0054 a0012c0046t0005 others(8): Show a0006c0016t0008 a0007c0041t0054 a0012c0046t0005 a0012c0055t0005 a0013c0009t0020 a0032c0036t0005 a0033c0035t0005 a0048c0060t0006 a0076c0094t0001 a0078c0093t0004 a0095c0123t0005	a0006c0016t0008g0111 a0006c0016t0008g0178 a0007c0041t0054g0009 others(10): Show a0006c0016t0008g0111 a0006c0016t0008g0178 a0007c0041t0054g0009 a0012c0046t0005g0044 a0012c0055t0005g0069 a0013c0009t0020g0008 a0013c0009t0020g0013 a0032c0036t0005g0022 a0033c0035t0005g0026 a0048c0060t0006g0039 a0076c0094t0001g0110 a0078c0093t0004g0145 a0095c0123t0005g0108	13	178	0.0730	-24	c.454 others(41): Show c.4541-965_4541-942delATATATATATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	33/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78520104	CCCACACC others(17): Show CCCACACCTCACCCCCACTCAGTTT	C C	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0099 a0099	a0099c0069 a0099c0069	a0099c0069t0008 a0099c0069t0008	a0099c0069t0008g0101 a0099c0069t0008g0101	1	178	0.0056	-24	c.105 others(43): Show c.10540+656_10540+679delCACCCCCACTCAGTTTCCACACCT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	67/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FREM1_chr9_14732152_14915428	14861020	CACATATA others(17): Show CACATATATACATATATACATATAT	C C	intron_variant intron_variant	MODIFIER	NA18941.hp2 NA18975.hp1 NA19001.hp2 NA18941.hp2 NA18975.hp1 NA19001.hp2	a0009 a0018 a0056 a0009 a0018 a0056	a0009c0103 a0018c0106 a0056c0081 a0009c0103 a0018c0106 a0056c0081	a0009c0103t0001 a0018c0106t0001 a0056c0081t0001 a0009c0103t0001 a0018c0106t0001 a0056c0081t0001	a0009c0103t0001g0285 a0018c0106t0001g0290 a0056c0081t0001g0193 a0009c0103t0001g0285 a0018c0106t0001g0290 a0056c0081t0001g0193	3	346	0.0087	-24	c.330 others(41): Show c.330-1560_330-1537delATATATGTATATATGTATATATGT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM2_chr13_38682077_38892131	38813496	CTCTCTCT others(17): Show CTCTCTCTCTCTCTCTCTCTCTCCT	C C	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG01981.hp1	a0023 a0023	a0023c0042 a0023c0042	a0023c0042t0048 a0023c0042t0048	a0023c0042t0048g0236 a0023c0042t0048g0236	1	262	0.0038	-24	c.601 others(45): Show c.6019+28689_6019+28712delTCTCTCTCTCTCTCTCTCTCTCCT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23			chr13	TogoVar
FREM2_chr13_38682077_38892131	38813498	CTCTCTCT others(17): Show CTCTCTCTCTCTCTCTCTCTCCTCT	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0008 a0001c0017t0008	a0001c0017t0008g0261 a0001c0017t0008g0261	1	262	0.0038	-24	c.601 others(45): Show c.6019+28691_6019+28714delTCTCTCTCTCTCTCTCTCTCCTCT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23			chr13	TogoVar
FREM2_chr13_38682077_38892131	38813500	CTCTCTCT others(17): Show CTCTCTCTCTCTCTCTCTCCTCTCT	C C	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03516.hp1 HG02280.hp1 HG03516.hp1	a0014 a0032 a0014 a0032	a0014c0022 a0032c0058 a0014c0022 a0032c0058	a0014c0022t0003 a0032c0058t0003 a0014c0022t0003 a0032c0058t0003	a0014c0022t0003g0002 a0032c0058t0003g0195 a0014c0022t0003g0002 a0032c0058t0003g0195	2	262	0.0076	-24	c.601 others(45): Show c.6019+28693_6019+28716delTCTCTCTCTCTCTCTCTCCTCTCT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23			chr13	TogoVar
FREM2_chr13_38682077_38892131	38830730	TTTTCCTC others(17): Show TTTTCCTCTTCAATGCTGCCAAGCA	T T	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01981.hp1 HG02257.hp2 others(6): Show HG01496.hp1 HG01981.hp1 HG02257.hp2 HG02559.hp2 HG02572.hp2 HG02723.hp1 HG03098.hp1 HG03130.hp1 NA19240.hp2	a0001 a0004 a0008 others(5): Show a0001 a0004 a0008 a0010 a0016 a0023 a0041 a0052	a0001c0017 a0004c0004 a0008c0019 others(6): Show a0001c0017 a0004c0004 a0008c0019 a0010c0013 a0016c0059 a0016c0060 a0023c0042 a0041c0079 a0052c0045	a0001c0017t0055 a0004c0004t0012 a0008c0019t0012 others(6): Show a0001c0017t0055 a0004c0004t0012 a0008c0019t0012 a0010c0013t0003 a0016c0059t0043 a0016c0060t0029 a0023c0042t0048 a0041c0079t0039 a0052c0045t0054	a0001c0017t0055g0256 a0004c0004t0012g0196 a0008c0019t0012g0115 others(6): Show a0001c0017t0055g0256 a0004c0004t0012g0196 a0008c0019t0012g0115 a0010c0013t0003g0107 a0016c0059t0043g0101 a0016c0060t0029g0106 a0023c0042t0048g0236 a0041c0079t0039g0093 a0052c0045t0054g0257	9	262	0.0344	-24	c.602 others(45): Show c.6020-15840_6020-15817delTCCTCTTCAATGCTGCCAAGCATT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr13	TogoVar
FRG2C_chr3_75659328_75672173	75669847	GAGTCCGC others(17): Show GAGTCCGCGGTGGGGCTGGAGCCCC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0002 a0002c0002t0002g0002	1	410	0.0024	-24	c.38 others(35): Show c.3807_*3830delAGTCCGCGGTGGGGCTGGAGCCCC	FRG2C	ENSG00000172969.8	transcript	ENST00000308062.8	protein_coding		2675		chr3	TogoVar

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