Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LCN15_chr9_136754634_136769518	136769303	TCCATGCA others(18): Show TCCATGCACTGCCCCCCGCCACCCCC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01074.hp1 HG02976.hp1 HG01074.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	2	356	0.0056	-25	c.-48 others(36): Show c.-4840_-4816delGGGGGTGGCGGGGGGCAGTGCATGG	LCN15	ENSG00000177984.7	transcript	ENST00000316144.6	protein_coding		4786		chr9	TogoVar
LCN1_chr9_135516440_135531540	135529097	AAAAATAA others(18): Show AAAAATAAAATAAAATAAAATAAAAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 HG02080.hp2 NA19240.hp1 HG02055.hp2 HG02080.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0095 a0001c0001t0001g0001 a0001c0001t0001g0025 a0001c0001t0001g0095	3	436	0.0069	-25	c.27 others(36): Show c.2756_*2780delAAAATAAAATAAAATAAAATAAAAT	LCN1	ENSG00000160349.10	transcript	ENST00000371781.4	protein_coding		2558		chr9	TogoVar
LCORL_chr4_17836187_18026755	17998986	ATATATAT others(18): Show ATATATATATATATATATACACACAT	A A	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03453.hp1 HG02809.hp1 HG03453.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0008 a0004c0005t0031 a0004c0005t0008 a0004c0005t0031	a0004c0005t0008g0289 a0004c0005t0031g0284 a0004c0005t0008g0289 a0004c0005t0031g0284	2	292	0.0069	-25	c.154 others(44): Show c.154+22587_154+22611delATGTGTGTATATATATATATATATA	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LDB1_chr10_102101489_102125368	102106541	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01928.hp2 HG01993.hp1 HG02273.hp2 HG01928.hp2 HG01993.hp1 HG02273.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0047 a0001c0001t0025g0086 a0001c0001t0025g0047 a0001c0001t0025g0086	3	376	0.0080	-25	c.15 others(36): Show c.1527_*1551delTTTTTTTTTTTTTTTTTTTTTTTTT	LDB1	ENSG00000198728.11	transcript	ENST00000673968.1	protein_coding	11/11	1527		chr10	TogoVar
LDB2_chr4_16496541_16903645	16581991	GGGAAGGA others(18): Show GGGAAGGAAGGGAAGGAAGGAAGGAA	G G	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0116 a0001c0001t0003g0116	1	162	0.0062	-25	c.615 others(42): Show c.615+3906_615+3930delTTCCTTCCTTCCTTCCCTTCCTTCC	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	5/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16586503	CACACACA others(18): Show CACACACACACACACACACACACAAA	C C	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0107	1	162	0.0062	-25	c.532 others(40): Show c.532-523_532-499delTTTGTGTGTGTGTGTGTGTGTGTGT	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	4/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16854362	ATAATTCT others(18): Show ATAATTCTGTTGTGGGTTCTTCCCCT	A A	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02809.hp2 HG02897.hp1 others(2): Show HG01243.hp2 HG02809.hp2 HG02897.hp1 HG03098.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0005 a0001c0002t0001 a0001c0001t0001 a0001c0001t0005 a0001c0002t0001	a0001c0001t0001g0031 a0001c0001t0001g0143 a0001c0001t0005g0144 others(2): Show a0001c0001t0001g0031 a0001c0001t0001g0143 a0001c0001t0005g0144 a0001c0002t0001g0030 a0001c0002t0001g0142	5	162	0.0309	-25	c.132 others(44): Show c.132+43967_132+43991delAGGGGAAGAACCCACAACAGAATTA	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	1/7			chr4	TogoVar
LDHA_chr11_18389563_18413425	18400446	CACACACA others(18): Show CACACACACACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0068 a0001c0002t0003g0068	1	390	0.0026	-25	c.245 others(40): Show c.245-390_245-366delACACACACACACACACACACACACA	LDHA	ENSG00000134333.15	transcript	ENST00000422447.8	protein_coding	3/7			chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36133343	ATTTTCTT others(18): Show ATTTTCTTTTCCTTTCTTTTCTTTTC	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00639.hp1 others(47): Show HG00099.hp1 HG00099.hp2 HG00639.hp1 HG00639.hp2 HG00741.hp1 HG01167.hp1 HG01175.hp2 HG01192.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01515.hp1 HG01517.hp2 HG01884.hp2 HG01934.hp1 HG02004.hp2 HG02027.hp2 HG02056.hp1 HG02074.hp1 HG02129.hp1 HG02155.hp1 HG02280.hp1 HG02523.hp2 HG02602.hp1 HG02735.hp2 HG02895.hp1 HG03139.hp1 HG03669.hp2 HG03834.hp1 HG04204.hp2 NA18612.hp2 NA18747.hp2 NA18943.hp2 NA18945.hp1 NA18945.hp2 NA18949.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18965.hp2 NA18975.hp1 NA18979.hp2 NA19012.hp2 NA19056.hp1 NA19068.hp2 NA19079.hp2 NA19084.hp1 NA19085.hp1 NA19087.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0007	a0001c0001 a0001c0002 a0002c0003 others(4): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0002c0006 a0005c0010 a0007c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(14): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0016 a0001c0001t0019 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0014 a0001c0002t0017 a0002c0003t0001 a0002c0004t0001 a0002c0004t0007 a0002c0006t0001 a0005c0010t0001 a0007c0008t0001	a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0056 others(47): Show a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0065 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0087 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0123 a0001c0001t0001g0135 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0164 a0001c0001t0001g0169 a0001c0001t0001g0172 a0001c0001t0001g0175 a0001c0001t0002g0088 a0001c0001t0002g0107 a0001c0001t0002g0122 a0001c0001t0002g0124 a0001c0001t0003g0051 a0001c0001t0003g0052 a0001c0001t0003g0153 a0001c0001t0007g0053 a0001c0001t0016g0034 a0001c0001t0019g0098 a0001c0002t0001g0068 a0001c0002t0001g0081 a0001c0002t0001g0090 a0001c0002t0001g0102 a0001c0002t0001g0113 a0001c0002t0001g0130 a0001c0002t0001g0160 a0001c0002t0001g0176 a0001c0002t0001g0183 a0001c0002t0002g0026 a0001c0002t0003g0128 a0001c0002t0003g0133 a0001c0002t0014g0220 a0001c0002t0017g0182 a0002c0003t0001g0228 a0002c0003t0001g0229 a0002c0004t0001g0226 a0002c0004t0001g0230 a0002c0004t0007g0233 a0002c0006t0001g0227 a0005c0010t0001g0041 a0007c0008t0001g0032	50	236	0.2119	-25	c.454 others(44): Show c.454+34893_454+34917delCTTTCTTTTCTTTTCTTTTCTTTTC	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD3_chr11_35939062_36237136	36133354	CTTTCTTT others(18): Show CTTTCTTTTCTTTTCTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00609.hp1 HG00642.hp1 others(63): Show HG00558.hp1 HG00609.hp1 HG00642.hp1 HG00741.hp2 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01109.hp2 HG01167.hp2 HG01175.hp1 HG01261.hp2 HG01361.hp2 HG01496.hp1 HG01884.hp1 HG01891.hp2 HG01952.hp2 HG01993.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp2 HG02129.hp2 HG02155.hp2 HG02280.hp2 HG02602.hp2 HG02622.hp1 HG02717.hp2 HG02735.hp1 HG02818.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp2 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03492.hp2 HG03516.hp2 HG03540.hp2 HG03710.hp1 HG03831.hp2 HG03834.hp2 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18906.hp2 NA18949.hp2 NA18965.hp1 NA18975.hp2 NA18999.hp2 NA19056.hp2 NA19068.hp1 NA19079.hp1 NA19085.hp2 NA19087.hp1 NA19088.hp1 NA21309.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0003c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0001t0015 a0001c0001t0021 a0001c0001t0024 a0001c0002t0001 a0001c0002t0002 a0001c0002t0007 a0001c0002t0008 a0001c0002t0018 a0001c0002t0022 a0002c0003t0002 a0002c0004t0001 a0003c0005t0004	a0001c0001t0001g0005 a0001c0001t0001g0024 a0001c0001t0001g0027 others(63): Show a0001c0001t0001g0005 a0001c0001t0001g0024 a0001c0001t0001g0027 a0001c0001t0001g0031 a0001c0001t0001g0054 a0001c0001t0001g0059 a0001c0001t0001g0079 a0001c0001t0001g0086 a0001c0001t0001g0100 a0001c0001t0001g0118 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0168 a0001c0001t0001g0174 a0001c0001t0001g0187 a0001c0001t0001g0222 a0001c0001t0002g0033 a0001c0001t0002g0069 a0001c0001t0002g0131 a0001c0001t0003g0025 a0001c0001t0003g0071 a0001c0001t0003g0109 a0001c0001t0003g0190 a0001c0001t0003g0194 a0001c0001t0003g0224 a0001c0001t0004g0016 a0001c0001t0004g0188 a0001c0001t0004g0189 a0001c0001t0005g0044 a0001c0001t0005g0092 a0001c0001t0005g0094 a0001c0001t0005g0205 a0001c0001t0007g0018 a0001c0001t0007g0045 a0001c0001t0008g0143 a0001c0001t0008g0199 a0001c0001t0012g0001 a0001c0001t0012g0008 a0001c0001t0015g0204 a0001c0001t0021g0170 a0001c0001t0024g0141 a0001c0002t0001g0028 a0001c0002t0001g0061 a0001c0002t0001g0072 a0001c0002t0001g0091 a0001c0002t0001g0116 a0001c0002t0001g0139 a0001c0002t0001g0152 a0001c0002t0001g0157 a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0163 a0001c0002t0001g0186 a0001c0002t0001g0196 a0001c0002t0001g0212 a0001c0002t0002g0134 a0001c0002t0007g0084 a0001c0002t0007g0215 a0001c0002t0008g0038 a0001c0002t0008g0039 a0001c0002t0018g0129 a0001c0002t0022g0101 a0002c0003t0002g0225 a0002c0004t0001g0232 a0003c0005t0004g0093 a0003c0005t0004g0209	66	236	0.2797	-25	c.454 others(44): Show c.454+34912_454+34936delCTTTTCTTTTCTTTTCTTTTCTTTT	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD4_chr18_13213760_13657751	13321861	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00639.hp1 HG01071.hp1 others(3): Show HG00099.hp1 HG00639.hp1 HG01071.hp1 HG01255.hp1 HG01516.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0025 a0001c0001t0027 others(1): Show a0001c0001t0002 a0001c0001t0025 a0001c0001t0027 a0001c0001t0028	a0001c0001t0002g0061 a0001c0001t0002g0139 a0001c0001t0002g0158 others(3): Show a0001c0001t0002g0061 a0001c0001t0002g0139 a0001c0001t0002g0158 a0001c0001t0025g0106 a0001c0001t0027g0069 a0001c0001t0028g0144	6	178	0.0337	-25	c.-38 others(46): Show c.-383+43690_-383+43714delAAAAAAAAAAAAAAAAAAAAAAAA A	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr18	TogoVar
LEKR1_chr3_156821353_157051129	156987022	CTATTGTA others(18): Show CTATTGTATTGTATTGTATTGTATTG	C C	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0122 a0001c0003t0001g0122	1	244	0.0041	-25	c.828 others(42): Show c.828-5585_828-5561delTATTGTATTGTATTGTATTGTATTG	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LEKR1_chr3_156821353_157051129	157028526	AAATCACA others(18): Show AAATCACATCCTGGTGCTCTGTCCTT	A A	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02809.hp2 HG02451.hp1 HG02809.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0156 a0001c0004t0001g0157 a0001c0004t0001g0156 a0001c0004t0001g0157	2	244	0.0082	-25	c.166 others(42): Show c.1668+152_1668+176delTCACATCCTGGTGCTCTGTCCTTAA	LEKR1	ENSG00000197980.14	transcript	ENST00000356539.9	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr3	TogoVar
LENG8_chr19_54444199_54467016	54444671	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02165.hp1 HG04199.hp2 HG02165.hp1 HG04199.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0002 a0001c0001t0006g0021 a0001c0001t0001g0002 a0001c0001t0006g0021	2	431	0.0046	-25	c.-46 others(36): Show c.-4694_-4670delAAAAAAAAAAAAAAAAAAAAAAAAA	LENG8	ENSG00000167615.18	transcript	ENST00000326764.10	protein_coding		4527		chr19	TogoVar
LEPR_chr1_65415668_65646559	65531867	CTAGTATA others(18): Show CTAGTATACGAAGTTTCTTTAGAGCG	C C	intron_variant intron_variant	MODIFIER	HG00738.hp1 NA20300.hp1 NA20752.hp2 HG00738.hp1 NA20300.hp1 NA20752.hp2	a0001 a0004 a0001 a0004	a0001c0009 a0004c0003 a0001c0009 a0004c0003	a0001c0009t0012 a0004c0003t0004 a0001c0009t0012 a0004c0003t0004	a0001c0009t0012g0112 a0004c0003t0004g0110 a0004c0003t0004g0111 a0001c0009t0012g0112 a0004c0003t0004g0110 a0004c0003t0004g0111	3	216	0.0139	-25	c.-20 others(44): Show c.-20-33676_-20-33652delGTATACGAAGTTTCTTTAGAGCGTA	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LEP_chr7_128236278_128262629	128258709	CTTTCTTT others(18): Show CTTTCTTTCTTTCTTTCTTTCTTTCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0046 a0001c0002t0013g0046	1	395	0.0025	-25	c.39 others(36): Show c.3947_*3971delTTTCTTTCTTTCTTTCTTTCTTTCT	LEP	ENSG00000174697.5	transcript	ENST00000308868.5	protein_coding		1081		chr7	TogoVar
LETM1_chr4_1806479_1861156	1825530	GTGCCGGC others(18): Show GTGCCGGCCTGGCACCAGGCCAATAT	G G	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0175	1	200	0.0050	-25	c.120 others(39): Show c.1200+9_1200+33delATATTGGCCTGGTGCCAGGCCGGCA	LETM1	ENSG00000168924.15	transcript	ENST00000302787.3	protein_coding	7/13			chr4	TogoVar
LGALSL_chr2_64449162_64466381	64466345	TTCAGCTC others(18): Show TTCAGCTCCATGCATTTATCACCAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18989.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0008 a0001c0001t0005g0008	1	422	0.0024	-25	c.79 others(36): Show c.7918_*7942delTCAGCTCCATGCATTTATCACCAAA	LGALSL	ENSG00000119862.13	transcript	ENST00000238875.10	protein_coding		4965		chr2	TogoVar
LHFPL3_chr7_104323603_104913561	104833311	TATATATA others(18): Show TATATATATATTATATATATAATAGG	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp2 HG02074.hp2 others(1): Show HG00558.hp1 HG00558.hp2 HG02074.hp2 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0013 a0001c0001t0004 a0001c0001t0005 a0001c0001t0013	a0001c0001t0004g0028 a0001c0001t0004g0054 a0001c0001t0005g0020 others(1): Show a0001c0001t0004g0028 a0001c0001t0004g0054 a0001c0001t0005g0020 a0001c0001t0013g0049	4	86	0.0465	-25	c.683 others(44): Show c.683-72865_683-72841delTATATATATAATAGGATATATATAT	LHFPL3	ENSG00000187416.13	transcript	ENST00000424859.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr7	TogoVar
LHFPL5_chr6_35800352_35829070	35818333	ATATATAT others(18): Show ATATATATATATATATGTATTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00733.hp2 HG01192.hp1 others(5): Show HG00140.hp1 HG00733.hp2 HG01192.hp1 HG01515.hp1 NA18950.hp2 NA18960.hp1 NA18965.hp1 NA19070.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0030 a0003c0003t0086	a0001c0001t0001g0104 a0001c0001t0001g0341 a0001c0001t0002g0103 others(5): Show a0001c0001t0001g0104 a0001c0001t0001g0341 a0001c0001t0002g0103 a0001c0001t0002g0162 a0001c0001t0005g0331 a0001c0001t0007g0342 a0001c0001t0030g0339 a0003c0003t0086g0036	8	386	0.0207	-25	c.650 others(42): Show c.650-1102_650-1078delATATATATATATATGTATTTTTTTT	LHFPL5	ENSG00000197753.11	transcript	ENST00000360215.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr6	TogoVar
LHPP_chr10_124456823_124619141	124506962	GGGCGGGT others(18): Show GGGCGGGTAGACAGGATTTCAGGTGA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0191 a0001c0001t0001g0191	1	260	0.0039	-25	c.624 others(42): Show c.624+8837_624+8861delCGGGTAGACAGGATTTCAGGTGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507206	GGGGGGAT others(18): Show GGGGGGATAGGGAAGATTTCAGGTGT	G G	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01952.hp1 HG03831.hp1 HG00323.hp1 HG01952.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0088 a0001c0001t0001g0185 a0001c0001t0001g0186	3	260	0.0115	-25	c.624 others(42): Show c.624+9081_624+9105delGGGATAGGGAAGATTTCAGGTGTGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507209	GGGATAGG others(18): Show GGGATAGGGAAGATTTCAGGTGTGGA	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03041.hp2 HG02922.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0131 a0001c0001t0001g0099 a0001c0001t0001g0131	2	260	0.0077	-25	c.624 others(42): Show c.624+9084_624+9108delATAGGGAAGATTTCAGGTGTGGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507217	GAAGATTT others(18): Show GAAGATTTCAGGTGTGGAGGGTAGGC	G G	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0077	1	260	0.0039	-25	c.624 others(42): Show c.624+9091_624+9115delAGATTTCAGGTGTGGAGGGTAGGCA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507291	GAGGATTT others(18): Show GAGGATTTCAGGTGTGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01943.hp1 HG00597.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0055 a0001c0001t0001g0043 a0001c0001t0001g0055	2	260	0.0077	-25	c.624 others(42): Show c.624+9177_624+9201delTGGAGGGTAGACAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507381	GGGATAGG others(18): Show GGGATAGGGAGTATTTCAGGTGGGGA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG01074.hp2 others(8): Show HG00099.hp2 HG00140.hp1 HG01074.hp2 HG02145.hp1 HG03704.hp2 NA18944.hp1 NA18947.hp2 NA18966.hp1 NA19004.hp2 NA19011.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 a0001c0001t0001 a0001c0001t0004 a0001c0001t0012	a0001c0001t0001g0032 a0001c0001t0001g0077 a0001c0001t0001g0133 others(8): Show a0001c0001t0001g0032 a0001c0001t0001g0077 a0001c0001t0001g0133 a0001c0001t0001g0156 a0001c0001t0001g0191 a0001c0001t0001g0217 a0001c0001t0001g0234 a0001c0001t0001g0237 a0001c0001t0001g0244 a0001c0001t0004g0029 a0001c0001t0012g0027	11	260	0.0423	-25	c.624 others(42): Show c.624+9256_624+9280delATAGGGAGTATTTCAGGTGGGGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507414	GAGGATTT others(18): Show GAGGATTTCAGGTGTGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02559.hp1 NA18975.hp1 HG01891.hp2 HG02559.hp1 NA18975.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0005 a0001c0001t0001 a0003c0003t0005	a0001c0001t0001g0040 a0003c0003t0005g0255 a0003c0003t0005g0256 a0001c0001t0001g0040 a0003c0003t0005g0255 a0003c0003t0005g0256	3	260	0.0115	-25	c.624 others(42): Show c.624+9300_624+9324delTGGAGGGTAGACAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507463	GAGGATTT others(18): Show GAGGATTTCAGGTGTGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0074 a0001c0001t0001g0074	1	260	0.0039	-25	c.624 others(42): Show c.624+9349_624+9373delTGGAGGGTAGACAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507504	GGGATAGG others(18): Show GGGATAGGGAGTATTTCAGGTGGGGA	G G	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01168.hp2 HG01169.hp1 others(6): Show HG00597.hp1 HG01168.hp2 HG01169.hp1 HG02015.hp1 HG02145.hp1 NA18965.hp1 NA19011.hp2 NA19064.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0070 others(6): Show a0001c0001t0001g0017 a0001c0001t0001g0043 a0001c0001t0001g0070 a0001c0001t0001g0227 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0244	9	260	0.0346	-25	c.624 others(42): Show c.624+9379_624+9403delATAGGGAGTATTTCAGGTGGGGAGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507586	GAGTATTT others(18): Show GAGTATTTCAGGTGTGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02523.hp2 HG02602.hp1 others(2): Show HG01496.hp2 HG02523.hp2 HG02602.hp1 HG04199.hp2 NA19065.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0017 a0002c0002t0001 a0001c0001t0001 a0001c0001t0017 a0002c0002t0001	a0001c0001t0001g0074 a0001c0001t0001g0127 a0001c0001t0001g0214 others(2): Show a0001c0001t0001g0074 a0001c0001t0001g0127 a0001c0001t0001g0214 a0001c0001t0017g0025 a0002c0002t0001g0031	5	260	0.0192	-25	c.624 others(42): Show c.624+9461_624+9485delTATTTCAGGTGTGGAGGGTAGACAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507660	GAGTATTT others(18): Show GAGTATTTCAGGTGGGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00738.hp1 HG01257.hp2 others(5): Show HG00280.hp2 HG00738.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp2 HG01496.hp2 NA19004.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0126 others(5): Show a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0214 a0001c0001t0001g0234	8	260	0.0308	-25	c.625 others(42): Show c.625-9517_625-9493delTATTTCAGGTGGGGAGGGTAGACAG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507771	TGGGGGGA others(18): Show TGGGGGGATAGGGAGTATTTCAGGTG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00597.hp1 others(43): Show HG00099.hp2 HG00140.hp1 HG00597.hp1 HG00738.hp1 HG01074.hp2 HG01168.hp2 HG01169.hp1 HG01192.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp2 HG01496.hp2 HG01891.hp2 HG02015.hp1 HG02145.hp1 HG02280.hp1 HG02300.hp1 HG02523.hp2 HG02559.hp1 HG02683.hp1 HG02738.hp2 HG02922.hp1 HG02970.hp2 HG03041.hp2 HG03130.hp2 HG03471.hp1 HG03704.hp1 HG03831.hp1 HG03927.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp2 HG04228.hp1 HG06807.hp2 NA18522.hp2 NA18944.hp1 NA18945.hp2 NA18947.hp2 NA18965.hp2 NA18966.hp1 NA18970.hp1 NA19004.hp2 NA19011.hp2 NA19064.hp1 NA19065.hp1 NA19090.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 others(4): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0012 a0001c0001t0014 a0002c0002t0001 a0003c0003t0002 a0003c0003t0005	a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0043 others(43): Show a0001c0001t0001g0017 a0001c0001t0001g0033 a0001c0001t0001g0043 a0001c0001t0001g0070 a0001c0001t0001g0074 a0001c0001t0001g0077 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0091 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0109 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0134 a0001c0001t0001g0136 a0001c0001t0001g0138 a0001c0001t0001g0156 a0001c0001t0001g0167 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0184 a0001c0001t0001g0191 a0001c0001t0001g0196 a0001c0001t0001g0214 a0001c0001t0001g0217 a0001c0001t0001g0227 a0001c0001t0001g0230 a0001c0001t0001g0234 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0249 a0001c0001t0004g0029 a0001c0001t0012g0027 a0001c0001t0014g0096 a0002c0002t0001g0023 a0002c0002t0001g0122 a0002c0002t0001g0125 a0002c0002t0001g0198 a0003c0003t0002g0007 a0003c0003t0002g0089 a0003c0003t0002g0090 a0003c0003t0005g0255 a0003c0003t0005g0256	46	260	0.1769	-25	c.625 others(42): Show c.625-9402_625-9378delATAGGGAGTATTTCAGGTGGGGGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507808	GAGGATTT others(18): Show GAGGATTTCAGGTGTGGAGGGTAGAC	G G	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02970.hp1 HG02922.hp2 HG02970.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0002 a0001c0001t0001 a0003c0003t0002	a0001c0001t0001g0131 a0003c0003t0002g0260 a0001c0001t0001g0131 a0003c0003t0002g0260	2	260	0.0077	-25	c.625 others(42): Show c.625-9358_625-9334delTGGAGGGTAGACAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHX4_chr1_180225264_180283984	180234193	ATATATAT others(18): Show ATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18747.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0369 a0002c0002t0001g0369	1	402	0.0025	-25	c.76+ others(40): Show c.76+3589_76+3613delTATATATATATATATATATATATAT	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	1/5			chr1	TogoVar
LIFR_chr5_38469668_38561646	38482336	TCTGTATT others(18): Show TCTGTATTTCACACAACAGCACAGCC	T T	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02615.hp1 HG02622.hp1 others(12): Show HG01243.hp1 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02922.hp1 HG03041.hp1 HG03139.hp1 HG03540.hp2 HG03704.hp1 HG03834.hp1 HG03942.hp1 HG04199.hp2 NA18522.hp1 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0010 a0005c0005 a0001c0001 a0001c0010 a0005c0005	a0001c0001t0008 a0001c0001t0014 a0001c0001t0028 others(3): Show a0001c0001t0008 a0001c0001t0014 a0001c0001t0028 a0001c0001t0046 a0001c0010t0014 a0005c0005t0011	a0001c0001t0008g0036 a0001c0001t0008g0037 a0001c0001t0008g0038 others(12): Show a0001c0001t0008g0036 a0001c0001t0008g0037 a0001c0001t0008g0038 a0001c0001t0008g0039 a0001c0001t0008g0040 a0001c0001t0008g0074 a0001c0001t0014g0042 a0001c0001t0028g0041 a0001c0001t0046g0046 a0001c0010t0014g0043 a0001c0010t0014g0044 a0005c0005t0011g0268 a0005c0005t0011g0269 a0005c0005t0011g0270 a0005c0005t0011g0271	15	374	0.0401	-25	c.267 others(42): Show c.2671-143_2671-119delGGCTGTGCTGTTGTGTGAAATACAG	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	19/19			chr5	TogoVar
LILRA6_chr19_54231590_54247790	54242406	AGAACTAC others(18): Show AGAACTACTGTCTCCTCCCCACCCAG	A A	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0035 a0035	a0035c0053 a0035c0053	a0035c0053t0060 a0035c0053t0060	a0035c0053t0060g0186 a0035c0053t0060g0186	1	450	0.0022	-25	c.70+ others(36): Show c.70+88_71-97delCTGGGTGGGGAGGAGACAGTAGTTC	LILRA6	ENSG00000244482.11	transcript	ENST00000396365.7	protein_coding	2/7			chr19	TogoVar
LIMA1_chr12_50170788_50288520	50212257	GAGAGTCC others(18): Show GAGAGTCCCCTGCCTCACTTAGCCAC	G G	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0168 a0001c0001t0001g0168	1	294	0.0034	-25	c.631 others(42): Show c.631-6214_631-6190delGTGGCTAAGTGAGGCAGGGGACTCT	LIMA1	ENSG00000050405.14	transcript	ENST00000341247.9	protein_coding	4/10			chr12	TogoVar
LIMCH1_chr4_41533157_41705044	41574230	ATCCCCTC others(18): Show ATCCCCTCCCCTCCCCTCCCCTCCCC	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00639.hp1 HG00639.hp2 others(78): Show HG00621.hp1 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG01071.hp1 HG01071.hp2 HG01099.hp1 HG01167.hp1 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01255.hp1 HG01261.hp1 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01978.hp1 HG01978.hp2 HG02055.hp2 HG02257.hp2 HG02258.hp2 HG02300.hp1 HG02451.hp2 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02630.hp1 HG02723.hp1 HG02735.hp1 HG02738.hp2 HG02809.hp1 HG02886.hp2 HG02895.hp2 HG02897.hp2 HG02922.hp1 HG02970.hp1 HG02970.hp2 HG03041.hp2 HG03139.hp1 HG03209.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp2 HG03490.hp2 HG03491.hp1 HG03492.hp2 HG03516.hp1 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03704.hp1 HG03710.hp1 HG03710.hp2 HG03927.hp1 HG04184.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18747.hp1 NA18945.hp2 NA18971.hp1 NA18971.hp2 NA19004.hp1 NA19004.hp2 NA19009.hp1 NA19009.hp2 NA19056.hp1 NA19056.hp2 NA19060.hp1 NA19088.hp2 NA20129.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(11): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0010 a0011 a0014 a0015 a0016 a0017	a0001c0001 a0001c0013 a0001c0015 others(23): Show a0001c0001 a0001c0013 a0001c0015 a0001c0022 a0001c0025 a0001c0029 a0002c0002 a0002c0004 a0002c0014 a0002c0031 a0003c0003 a0003c0009 a0003c0034 a0004c0005 a0004c0032 a0005c0019 a0006c0008 a0006c0012 a0008c0006 a0009c0010 a0010c0017 a0011c0016 a0014c0038 a0015c0027 a0016c0026 a0017c0023	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(42): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0013t0031 a0001c0015t0001 a0001c0022t0001 a0001c0025t0001 a0001c0029t0001 a0002c0002t0001 a0002c0002t0005 a0002c0002t0007 a0002c0002t0016 a0002c0002t0017 a0002c0002t0021 a0002c0002t0030 a0002c0004t0003 a0002c0004t0022 a0002c0014t0004 a0002c0031t0016 a0003c0003t0001 a0003c0003t0004 a0003c0003t0006 a0003c0003t0019 a0003c0009t0001 a0003c0009t0004 a0003c0034t0026 a0004c0005t0001 a0004c0005t0002 a0004c0032t0001 a0005c0019t0005 a0005c0019t0014 a0006c0008t0001 a0006c0008t0024 a0006c0012t0020 a0008c0006t0001 a0008c0006t0005 a0008c0006t0008 a0009c0010t0019 a0009c0010t0033 a0010c0017t0015 a0011c0016t0010 a0014c0038t0002 a0015c0027t0003 a0016c0026t0001 a0017c0023t0009	a0001c0001t0001g0016 a0001c0001t0001g0023 a0001c0001t0001g0026 others(78): Show a0001c0001t0001g0016 a0001c0001t0001g0023 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0050 a0001c0001t0001g0053 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0001g0143 a0001c0001t0002g0119 a0001c0001t0002g0120 a0001c0001t0002g0121 a0001c0001t0002g0122 a0001c0001t0006g0004 a0001c0001t0006g0013 a0001c0001t0006g0063 a0001c0001t0006g0103 a0001c0013t0031g0111 a0001c0015t0001g0034 a0001c0022t0001g0019 a0001c0025t0001g0036 a0001c0029t0001g0144 a0002c0002t0001g0024 a0002c0002t0001g0032 a0002c0002t0001g0033 a0002c0002t0001g0062 a0002c0002t0001g0072 a0002c0002t0001g0115 a0002c0002t0001g0116 a0002c0002t0005g0021 a0002c0002t0007g0047 a0002c0002t0007g0048 a0002c0002t0016g0038 a0002c0002t0017g0118 a0002c0002t0021g0124 a0002c0002t0030g0098 a0002c0004t0003g0014 a0002c0004t0003g0018 a0002c0004t0003g0020 a0002c0004t0003g0029 a0002c0004t0003g0035 a0002c0004t0003g0039 a0002c0004t0003g0043 a0002c0004t0003g0049 a0002c0004t0003g0102 a0002c0004t0022g0132 a0002c0014t0004g0128 a0002c0031t0016g0141 a0003c0003t0001g0005 a0003c0003t0001g0058 a0003c0003t0004g0135 a0003c0003t0004g0136 a0003c0003t0006g0112 a0003c0003t0019g0114 a0003c0009t0001g0025 a0003c0009t0004g0011 a0003c0034t0026g0093 a0004c0005t0001g0094 a0004c0005t0001g0097 a0004c0005t0002g0080 a0004c0005t0002g0126 a0004c0032t0001g0095 a0005c0019t0005g0022 a0005c0019t0014g0149 a0006c0008t0001g0123 a0006c0008t0024g0006 a0006c0012t0020g0109 a0006c0012t0020g0110 a0008c0006t0001g0085 a0008c0006t0005g0042 a0008c0006t0008g0040 a0008c0006t0008g0041 a0009c0010t0019g0113 a0009c0010t0033g0105 a0010c0017t0015g0059 a0011c0016t0010g0096 a0014c0038t0002g0142 a0015c0027t0003g0017 a0016c0026t0001g0008 a0017c0023t0009g0084	81	154	0.5260	-25	c.-24 others(46): Show c.-240-24642_-240-24618delCCCTCCCCTCCCCTCCCCTCCCCT C	LIMCH1	ENSG00000064042.18	transcript	ENST00000503057.6	protein_coding	1/31		INFO_REALIGN_3_PRIME	chr4	TogoVar
LIME1_chr20_63731664_63744103	63734899	GGGGTCCC others(18): Show GGGGTCCCGCAGCCATCGGGTTCCCA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp2 HG03041.hp1 HG03209.hp2 others(1): Show HG02109.hp2 HG03041.hp1 HG03209.hp2 NA18522.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0004 a0003c0003t0001g0004	4	394	0.0102	-25	c.-18 others(36): Show c.-1830_-1806delGGGTCCCGCAGCCATCGGGTTCCCA	LIME1	ENSG00000203896.10	transcript	ENST00000309546.8	protein_coding		1764		chr20	TogoVar
LIMS1_chr2_108529470_108692246	108642340	TTGTTTTT others(18): Show TTGTTTTTTTTTTTTTTTGTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0208 a0001c0001t0003g0208	1	246	0.0041	-25	c.33- others(42): Show c.33-17263_33-17239delGTTTTTTTTTTTTTTTGTTTTTTGT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668668	CAAAAAAA others(18): Show CAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA18939.hp1 NA18978.hp2 NA19009.hp2 NA18939.hp1 NA18978.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203	3	348	0.0086	-25	c.11+ others(40): Show c.11+6321_11+6345delTTTTTTTTTTTTTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668687	AAAAAAAA others(18): Show AAAAAAAAAAAAAAAAAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG04184.hp2 HG02602.hp1 HG04184.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0141 a0001c0003t0011g0142 a0001c0003t0011g0141 a0001c0003t0011g0142	2	348	0.0058	-25	c.11+ others(40): Show c.11+6302_11+6326delGTTTTTTTTTTTTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIMS2_chr2_127633426_127680530	127668689	AAAAAAAA others(18): Show AAAAAAAAAAAAAAAAAAAAAAACAC	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0009 a0001c0005t0009	a0001c0005t0009g0079 a0001c0005t0009g0079	1	348	0.0029	-25	c.11+ others(40): Show c.11+6300_11+6324delGTGTTTTTTTTTTTTTTTTTTTTTT	LIMS2	ENSG00000072163.20	transcript	ENST00000355119.9	protein_coding	1/9			chr2	TogoVar
LIN7C_chr11_27489418_27511769	27493213	CGGCCTCC others(18): Show CGGCCTCCCAGAGTGCTGGGATTACA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0092 a0001c0001t0029g0092	1	406	0.0025	-25	c.54 others(36): Show c.5411_*5435delTGTAATCCCAGCACTCTGGGAGGCC	LIN7C	ENSG00000148943.12	transcript	ENST00000278193.7	protein_coding		1204		chr11	TogoVar
LINGO2_chr9_27932617_29218601	28096683	GTCCTGGC others(18): Show GTCCTGGCCAGGCACAGATGAGTATA	G G	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00438.hp1 HG00597.hp1 others(13): Show HG00408.hp2 HG00438.hp1 HG00597.hp1 HG00642.hp1 HG00741.hp1 HG01261.hp1 HG02027.hp1 HG02056.hp2 HG02572.hp2 HG02809.hp2 HG03130.hp1 HG06807.hp1 NA18990.hp2 NA18995.hp1 NA19043.hp1 NA19060.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0001t0016 a0001c0001t0020 a0001c0001t0022 a0002c0002t0001	a0001c0001t0001g0035 a0001c0001t0001g0047 a0001c0001t0001g0048 others(13): Show a0001c0001t0001g0035 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0002g0028 a0001c0001t0002g0044 a0001c0001t0003g0025 a0001c0001t0003g0049 a0001c0001t0004g0033 a0001c0001t0007g0006 a0001c0001t0007g0009 a0001c0001t0008g0040 a0001c0001t0012g0005 a0001c0001t0016g0011 a0001c0001t0020g0042 a0001c0001t0022g0031 a0002c0002t0001g0050	16	62	0.2581	-25	c.-35 others(46): Show c.-35-146002_-35-145978delTATACTCATCTGTGCCTGGCCAGG A	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28769504	ATATATAT others(18): Show ATATATATATATATATTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03209.hp2 NA19060.hp2 HG03209.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0003 a0001c0001t0005	a0001c0001t0003g0049 a0001c0001t0005g0057 a0001c0001t0003g0049 a0001c0001t0005g0057	2	62	0.0323	-25	c.-39 others(46): Show c.-394-99249_-394-99225delAAAAAAAAAAATATATATATATAT A	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28769508	ATATATAT others(18): Show ATATATATATATTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0021 a0001c0001t0031g0021	1	62	0.0161	-25	c.-39 others(46): Show c.-394-99253_-394-99229delAAAAAAAAAAAAAAATATATATAT A	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28884971	AATATATA others(18): Show AATATATATAATATATAATAATATAT	A A	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0022 a0001c0001t0004g0022	1	62	0.0161	-25	c.-39 others(46): Show c.-395+62822_-395+62846delATATATTATTATATATTATATATA T	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	29071154	TTATTGTA others(18): Show TTATTGTATTGTATTGTATTGTATTG	T T	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0051 a0001c0001t0021g0051	1	62	0.0161	-25	c.-49 others(48): Show c.-491-123265_-491-123241delCAATACAATACAATACAATACA ATA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	1/6			chr9	TogoVar
LIPA_chr10_89208572_89256775	89248439	TTTATATT others(18): Show TTTATATTTATTTATTTATTTATTTA	T T	intron_variant intron_variant	MODIFIER	HG02080.hp2 NA18969.hp2 HG02080.hp2 NA18969.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0099 a0002c0002t0001g0100 a0002c0002t0001g0099 a0002c0002t0001g0100	2	384	0.0052	-25	c.-1- others(38): Show c.-1-815_-1-791delTAAATAAATAAATAAATAAATATAA	LIPA	ENSG00000107798.18	transcript	ENST00000336233.10	protein_coding	1/9			chr10	TogoVar

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