Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZYG11B_chr1_52721453_52832336	52817801	ATATATAT others(19): Show ATATATATATATATATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01261.hp1 NA19084.hp1 HG00642.hp2 HG01261.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0008 a0001c0001t0057 a0001c0001t0006 a0001c0001t0008 a0001c0001t0057	a0001c0001t0006g0188 a0001c0001t0008g0162 a0001c0001t0057g0172 a0001c0001t0006g0188 a0001c0001t0008g0162 a0001c0001t0057g0172	3	352	0.0085	-26	c.204 others(45): Show c.2044+1174_2044+1199delATATATATATATATTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817805	ATATATAT others(19): Show ATATATATATATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG03654.hp1 NA18990.hp2 others(1): Show HG00558.hp1 HG03654.hp1 NA18990.hp2 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0049 a0001c0001t0050 others(1): Show a0001c0001t0002 a0001c0001t0049 a0001c0001t0050 a0001c0001t0054	a0001c0001t0002g0304 a0001c0001t0049g0305 a0001c0001t0050g0313 others(1): Show a0001c0001t0002g0304 a0001c0001t0049g0305 a0001c0001t0050g0313 a0001c0001t0054g0192	4	352	0.0114	-26	c.204 others(45): Show c.2044+1178_2044+1203delATATATATATTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817807	ATATATAT others(19): Show ATATATATATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG01071.hp1 HG02056.hp1 others(5): Show HG00544.hp2 HG01071.hp1 HG02056.hp1 HG02132.hp2 HG02257.hp1 NA18960.hp1 NA19001.hp2 NA19080.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0007 a0001c0001 a0004c0007	a0001c0001t0002 a0001c0001t0034 a0004c0007t0042 a0001c0001t0002 a0001c0001t0034 a0004c0007t0042	a0001c0001t0002g0295 a0001c0001t0002g0297 a0001c0001t0002g0308 others(5): Show a0001c0001t0002g0295 a0001c0001t0002g0297 a0001c0001t0002g0308 a0001c0001t0002g0316 a0001c0001t0002g0330 a0001c0001t0002g0334 a0001c0001t0034g0179 a0004c0007t0042g0306	8	352	0.0227	-26	c.204 others(45): Show c.2044+1180_2044+1205delATATATATTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817813	ATATTTTT others(19): Show ATATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02523.hp2 NA18973.hp2 HG00621.hp1 HG02523.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0022 a0001c0001t0001 a0001c0001t0022	a0001c0001t0001g0001 a0001c0001t0001g0071 a0001c0001t0022g0171 a0001c0001t0001g0001 a0001c0001t0001g0071 a0001c0001t0022g0171	3	352	0.0085	-26	c.204 others(45): Show c.2044+1186_2044+1211delATTTTTTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52817815	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0170 a0001c0001t0022g0170	1	352	0.0028	-26	c.204 others(45): Show c.2044+1201_2044+1226delTTTTTTTTTTTTTTTTTTTTTTTTTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	13/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52825420	ACAGTAAT others(19): Show ACAGTAATGCCTTATAGTGGCACTAGT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18961.hp1 NA18961.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0062 a0001c0001t0062	a0001c0001t0062g0088 a0001c0001t0062g0088	1	352	0.0028	-26	c.37 others(37): Show c.3794_*3819delGTAATGCCTTATAGTGGCACTAGTCA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	14/14				3794	INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZZEF1_chr17_3999445_4148030	4036803	ACACACAC others(19): Show ACACACACACACACACTCTCTCTCTCT	A A	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0004 a0003c0003t0004	a0003c0003t0004g0262 a0003c0003t0004g0262	1	296	0.0034	-26	c.630 others(45): Show c.6307-2537_6307-2512delAGAGAGAGAGAGTGTGTGTGTGTGTG		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	39/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4087783	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02818.hp2 HG03195.hp1 HG02145.hp1 HG02818.hp2 HG03195.hp1	a0014 a0014	a0014c0022 a0014c0040 a0014c0022 a0014c0040	a0014c0022t0017 a0014c0040t0031 a0014c0022t0017 a0014c0040t0031	a0014c0022t0017g0294 a0014c0022t0017g0295 a0014c0040t0031g0293 a0014c0022t0017g0294 a0014c0022t0017g0295 a0014c0040t0031g0293	3	296	0.0101	-26	c.224 others(43): Show c.2242-275_2242-250delGTGTGTGTGTGTGTGTGTGTGTGTGT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	13/54						chr17	TogoVar
	ZZEF1_chr17_3999445_4148030	4112033	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG03139.hp2 HG03239.hp1 HG02965.hp1 HG03139.hp2 HG03239.hp1	a0003 a0004 a0003 a0004	a0003c0003 a0004c0005 a0003c0003 a0004c0005	a0003c0003t0004 a0004c0005t0006 a0003c0003t0004 a0004c0005t0006	a0003c0003t0004g0277 a0004c0005t0006g0010 a0004c0005t0006g0011 a0003c0003t0004g0277 a0004c0005t0006g0010 a0004c0005t0006g0011	3	296	0.0101	-26	c.106 others(43): Show c.1066+550_1066+575delATATATATATATATATATATATATAT		ZZEF1	ENSG00000074755.15	transcript	ENST00000381638.7	protein_coding	5/54						chr17	TogoVar