Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CD180_chr5_67174613_67201799	67177782	ACGAGGTC others(19): Show ACGAGGTCAAGAGATCAAGACCATCCT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0030 a0002c0002t0030	a0002c0002t0030g0131 a0002c0002t0030g0131	1	408	0.0025	-26	c.50 others(37): Show c.5049_*5074delAGGATGGTCTTGATCTCTTGACCTCG	CD180	ENSG00000134061.5	transcript	ENST00000256447.5	protein_coding		1830		chr5	TogoVar
CD200_chr3_112328156_112367812	112329452	AAAAAATT others(19): Show AAAAAATTTATTGGTACTTGTTGAGAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0009 a0003c0004t0001g0009	1	408	0.0025	-26	c.-37 others(37): Show c.-3760_-3735delAAAAATTTATTGGTACTTGTTGAGAT	CD200	ENSG00000091972.18	transcript	ENST00000315711.12	protein_coding		3703		chr3	TogoVar
CD276_chr15_73679383_73719514	73718234	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG02523.hp2 HG00621.hp1 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0009t0002 a0001c0001t0001 a0001c0009t0002	a0001c0001t0001g0254 a0001c0009t0002g0216 a0001c0001t0001g0254 a0001c0009t0002g0216	2	384	0.0052	-26	c.52 others(37): Show c.5279_*5304delTATATATATATATATATATATATATA	CD276	ENSG00000103855.18	transcript	ENST00000318443.10	protein_coding		3721		chr15	TogoVar
CD276_chr15_73679383_73719514	73718256	ATATATAT others(19): Show ATATATATATATATATATATATATATT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG02015.hp1 NA18943.hp1 HG01255.hp1 HG02015.hp1 NA18943.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0002 a0004c0004t0003 a0001c0001t0001 a0001c0001t0002 a0004c0004t0003	a0001c0001t0001g0001 a0001c0001t0002g0267 a0004c0004t0003g0062 a0001c0001t0001g0001 a0001c0001t0002g0267 a0004c0004t0003g0062	3	384	0.0078	-26	c.53 others(37): Show c.5301_*5326delTATATATATATATATATATATATATT	CD276	ENSG00000103855.18	transcript	ENST00000318443.10	protein_coding		3743		chr15	TogoVar
CD276_chr15_73679383_73719514	73718258	ATATATAT others(19): Show ATATATATATATATATATATATATTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp2 HG02572.hp1 HG01109.hp2 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0018 a0001c0001t0002g0018	2	384	0.0052	-26	c.53 others(37): Show c.5303_*5328delTATATATATATATATATATATATTTT	CD276	ENSG00000103855.18	transcript	ENST00000318443.10	protein_coding		3745		chr15	TogoVar
CD276_chr15_73679383_73719514	73718260	ATATATAT others(19): Show ATATATATATATATATATATATTTTTT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0054 a0004c0004t0003g0054	1	384	0.0026	-26	c.53 others(37): Show c.5305_*5330delTATATATATATATATATATATTTTTT	CD276	ENSG00000103855.18	transcript	ENST00000318443.10	protein_coding		3747		chr15	TogoVar
CD300A_chr17_74461634_74489794	74481354	CAGGTGGC others(19): Show CAGGTGGCTGGGCGGAGGGTACAGAGG	C C	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0189 a0001c0001t0001g0189	1	424	0.0024	-26	c.666 others(39): Show c.666+29_666+54delAGGTGGCTGGGCGGAGGGTACAGAGG	CD300A	ENSG00000167851.15	transcript	ENST00000360141.8	protein_coding	5/6			chr17	TogoVar
CD300E_chr17_74604885_74628738	74612224	GCTCTCTC others(19): Show GCTCTCTCTCTCTCTCTCTCTCTGTCT	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01891.hp1 HG02723.hp2 HG01891.hp1 HG02723.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0054 a0003c0003t0032 a0002c0002t0054 a0003c0003t0032	a0002c0002t0054g0063 a0003c0003t0032g0057 a0002c0002t0054g0063 a0003c0003t0032g0057	2	450	0.0044	-26	c.40 others(35): Show c.403_*428delAGACAGAGAGAGAGAGAGAGAGAGAG	CD300E	ENSG00000186407.7	transcript	ENST00000392619.2	protein_coding	4/4	403		chr17	TogoVar
CD36_chr7_80633642_80684274	80682762	TATACGTG others(19): Show TATACGTGTATACACGTGTATGTACAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG01891.hp1 HG02257.hp1 others(2): Show HG01255.hp1 HG01891.hp1 HG02257.hp1 HG03041.hp2 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0038 a0001c0001t0015 a0001c0001t0038	a0001c0001t0015g0036 a0001c0001t0015g0201 a0001c0001t0015g0202 others(1): Show a0001c0001t0015g0036 a0001c0001t0015g0201 a0001c0001t0015g0202 a0001c0001t0038g0130	5	392	0.0128	-26	c.63 others(37): Show c.6380_*6405delATACGTGTATACACGTGTATGTACAC	CD36	ENSG00000135218.19	transcript	ENST00000447544.7	protein_coding		3489		chr7	TogoVar
CD36_chr7_80633642_80684274	80682921	ATATATAC others(19): Show ATATATACGTATACGTGTATATATGTG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0226 a0001c0001t0052g0226	1	392	0.0026	-26	c.65 others(37): Show c.6539_*6564delTATATACGTATACGTGTATATATGTG	CD36	ENSG00000135218.19	transcript	ENST00000447544.7	protein_coding		3648		chr7	TogoVar
CD3G_chr11_118339344_118360161	118355564	CATATGTA others(19): Show CATATGTATATATACACATATACACAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0026 a0002c0002t0008g0026	1	442	0.0023	-26	c.24 others(37): Show c.2465_*2490delATATGTATATATACACATATACACAT	CD3G	ENSG00000160654.11	transcript	ENST00000532917.3	protein_coding		404		chr11	TogoVar
CD47_chr3_108038091_108096031	108044422	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAAAAAAC	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00741.hp2 HG01069.hp2 HG01081.hp2 others(8): Show HG00741.hp2 HG01069.hp2 HG01081.hp2 HG01109.hp1 HG01123.hp1 HG01192.hp2 HG01346.hp2 HG01361.hp1 HG01496.hp1 HG02004.hp1 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0022 a0001c0001t0009g0023 a0001c0001t0009g0164 others(6): Show a0001c0001t0009g0022 a0001c0001t0009g0023 a0001c0001t0009g0164 a0001c0001t0009g0180 a0001c0001t0009g0182 a0001c0001t0009g0186 a0001c0001t0009g0187 a0001c0001t0009g0196 a0001c0001t0009g0197	11	386	0.0285	-26	c.28 others(37): Show c.2840_*2865delGTTTTTTTTTTTTTTTTTTTTTTTTT	CD47	ENSG00000196776.17	transcript	ENST00000361309.6	protein_coding	11/11	2840		chr3	TogoVar
CD86_chr3_122050362_122126136	122085361	AAAGAGGG others(19): Show AAAGAGGGTTTCTGCCCTGAGCTGCTC	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0095 a0001c0001t0007g0095	1	304	0.0033	-26	c.15- others(41): Show c.15-6214_15-6189delCAAGAGGGTTTCTGCCCTGAGCTGCT	CD86	ENSG00000114013.16	transcript	ENST00000330540.7	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
CDADC1_chr13_49242925_49298485	49275710	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0304 a0001c0001t0002g0304	1	368	0.0027	-26	c.105 others(45): Show c.1050+1372_1050+1397delTATATATATATATATAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275712	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0308 a0001c0001t0002g0308	1	368	0.0027	-26	c.105 others(45): Show c.1050+1374_1050+1399delTATATATATATATAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275714	TATATATA others(19): Show TATATATATATATAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA20805.hp1 NA21309.hp1 HG00408.hp1 NA20805.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0253 a0001c0001t0002g0270 a0001c0001t0002g0314 a0001c0001t0002g0253 a0001c0001t0002g0270 a0001c0001t0002g0314	3	368	0.0082	-26	c.105 others(45): Show c.1050+1376_1050+1401delTATATATATATAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275716	TATATATA others(19): Show TATATATATATAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01516.hp1 HG03239.hp2 others(1): Show HG00280.hp1 HG01516.hp1 HG03239.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005	a0001c0001t0002g0009 a0001c0001t0004g0353 a0001c0001t0005g0249 a0001c0001t0002g0009 a0001c0001t0004g0353 a0001c0001t0005g0249	4	368	0.0109	-26	c.105 others(45): Show c.1050+1378_1050+1403delTATATATATAGAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275718	TATATATA others(19): Show TATATATATAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0284 a0001c0001t0002g0284	1	368	0.0027	-26	c.105 others(45): Show c.1050+1380_1050+1405delTATATATAGAGAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275720	TATATATA others(19): Show TATATATAGAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG04228.hp2 NA18960.hp1 NA20752.hp1 HG04228.hp2 NA18960.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0009 a0001c0001t0002 a0001c0001t0009	a0001c0001t0002g0274 a0001c0001t0002g0299 a0001c0001t0009g0287 a0001c0001t0002g0274 a0001c0001t0002g0299 a0001c0001t0009g0287	3	368	0.0082	-26	c.105 others(45): Show c.1050+1382_1050+1407delTATATAGAGAGAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275722	TATATAGA others(19): Show TATATAGAGAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02135.hp1 HG03516.hp1 NA18946.hp1 HG02135.hp1 HG03516.hp1 NA18946.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0109 a0001c0001t0002g0275 a0001c0001t0002g0296 a0001c0001t0001g0109 a0001c0001t0002g0275 a0001c0001t0002g0296	3	368	0.0082	-26	c.105 others(45): Show c.1050+1384_1050+1409delTATAGAGAGAGAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275724	TATAGAGA others(19): Show TATAGAGAGAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19086.hp2 NA19058.hp2 NA19086.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0259 a0001c0001t0002g0334 a0001c0001t0002g0259 a0001c0001t0002g0334	2	368	0.0054	-26	c.105 others(45): Show c.1050+1386_1050+1411delTAGAGAGAGAGAGAGAGAGAGAGAGA	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49275726	TAGAGAGA others(19): Show TAGAGAGAGAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02723.hp2 NA19064.hp1 NA19075.hp1 others(1): Show HG02723.hp2 NA19064.hp1 NA19075.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0265 a0001c0001t0002g0331 a0001c0001t0003g0218 others(1): Show a0001c0001t0002g0265 a0001c0001t0002g0331 a0001c0001t0003g0218 a0001c0001t0003g0235	4	368	0.0109	-26	c.105 others(45): Show c.1050+1431_1050+1456delAGAGAGAGAGAGAGAGAGAGAGAGAG	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDC14A_chr1_100347506_100525277	100412714	ATATATAT others(19): Show ATATATATATTTTATATATATATATTT	A A	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0301 a0001c0001t0007g0301	1	306	0.0033	-26	c.310 others(45): Show c.310-11498_310-11473delTTTATATATATATATTTTATATATAT	CDC14A	ENSG00000079335.20	transcript	ENST00000336454.5	protein_coding	4/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC25A_chr3_48152146_48193417	48168360	CCACACAC others(19): Show CCACACACACACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0124 a0001c0001t0001g0124	1	340	0.0029	-26	c.931 others(41): Show c.931-442_931-417delTGTGTGTGTGTGTGTGTGTGTGTGTG	CDC25A	ENSG00000164045.12	transcript	ENST00000302506.8	protein_coding	9/14			chr3	TogoVar
CDC42BPA_chr1_226984865_227323492	227135854	CCAAAAAA others(19): Show CCAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01109.hp2 HG01168.hp1 others(13): Show HG01106.hp1 HG01109.hp2 HG01168.hp1 HG01169.hp2 HG01261.hp2 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02818.hp1 HG02896.hp1 HG02970.hp1 HG03195.hp2 HG03486.hp2 NA19030.hp2 NA19240.hp1 NA21309.hp2	a0001 a0011 a0001 a0011	a0001c0006 a0011c0028 a0001c0006 a0011c0028	a0001c0006t0008 a0001c0006t0027 a0001c0006t0064 others(1): Show a0001c0006t0008 a0001c0006t0027 a0001c0006t0064 a0011c0028t0012	a0001c0006t0008g0321 a0001c0006t0008g0322 a0001c0006t0008g0333 others(13): Show a0001c0006t0008g0321 a0001c0006t0008g0322 a0001c0006t0008g0333 a0001c0006t0008g0334 a0001c0006t0008g0335 a0001c0006t0008g0336 a0001c0006t0008g0338 a0001c0006t0008g0339 a0001c0006t0008g0340 a0001c0006t0008g0342 a0001c0006t0008g0343 a0001c0006t0008g0344 a0001c0006t0008g0345 a0001c0006t0027g0347 a0001c0006t0064g0349 a0011c0028t0012g0328	16	352	0.0455	-26	c.139 others(45): Show c.1390+3696_1390+3721delTTTTTTTTTTTTTTTTTTTTTTTTTG	CDC42BPA	ENSG00000143776.20	transcript	ENST00000366766.8	protein_coding	10/36			chr1	TogoVar
CDC42BPA_chr1_226984865_227323492	227163108	ATATGTGT others(19): Show ATATGTGTGTATGTTTCCAAACATATG	A A	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG06807.hp1 HG02280.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0010 a0001c0001t0014g0015 a0001c0001t0014g0010 a0001c0001t0014g0015	2	352	0.0057	-26	c.600 others(43): Show c.600-2498_600-2473delCATATGTTTGGAAACATACACACATA	CDC42BPA	ENSG00000143776.20	transcript	ENST00000366766.8	protein_coding	5/36			chr1	TogoVar
CDC42BPB_chr14_102927380_103062549	102972688	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00639.hp1 HG01192.hp2 others(11): Show HG00099.hp2 HG00639.hp1 HG01192.hp2 HG01358.hp1 HG01952.hp1 HG02273.hp2 HG02293.hp2 HG02559.hp1 HG03927.hp1 NA18973.hp2 NA18994.hp1 NA19009.hp2 NA19068.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0008 others(1): Show a0001c0001 a0001c0002 a0001c0008 a0001c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0001c0002t0033 a0001c0008t0003 a0001c0015t0024	a0001c0001t0001g0085 a0001c0001t0001g0088 a0001c0001t0002g0209 others(11): Show a0001c0001t0001g0085 a0001c0001t0001g0088 a0001c0001t0002g0209 a0001c0001t0002g0225 a0001c0001t0007g0208 a0001c0002t0001g0082 a0001c0002t0001g0084 a0001c0002t0001g0087 a0001c0002t0002g0224 a0001c0002t0004g0033 a0001c0002t0004g0086 a0001c0002t0033g0183 a0001c0008t0003g0097 a0001c0015t0024g0315	14	320	0.0438	-26	c.164 others(43): Show c.1642-553_1642-528delTTTTTTTTTTTTTTTTTTTTTTTTTT	CDC42BPB	ENSG00000198752.11	transcript	ENST00000361246.7	protein_coding	12/36			chr14	TogoVar
CDC42SE1_chr1_151045985_151064622	151057696	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01175.hp1 HG02280.hp2 others(9): Show HG00673.hp2 HG01175.hp1 HG02280.hp2 HG02602.hp1 HG02698.hp1 HG02723.hp1 HG02965.hp2 HG02970.hp1 HG03130.hp1 HG03704.hp1 NA18964.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0016 a0001c0001t0017 a0001c0001t0006 a0001c0001t0016 a0001c0001t0017	a0001c0001t0006g0006 a0001c0001t0016g0039 a0001c0001t0017g0111 a0001c0001t0006g0006 a0001c0001t0016g0039 a0001c0001t0017g0111	12	342	0.0351	-26	c.-26 others(45): Show c.-263-1729_-263-1704delGTGTGTGTGTGTGTGTGTGTGTGTGT	CDC42SE1	ENSG00000197622.13	transcript	ENST00000357235.6	protein_coding	1/4			chr1	TogoVar
CDC42_chr1_22047709_22106360	22054903	ATATATAT others(19): Show ATATATATATATATATATATTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0072 a0001c0001t0072	a0001c0001t0072g0271 a0001c0001t0072g0271	1	352	0.0028	-26	c.-51 others(43): Show c.-51+2163_-51+2188delATATATATATATATATATTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054905	ATATATAT others(19): Show ATATATATATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01952.hp2 NA18964.hp2 NA19074.hp2 HG01952.hp2 NA18964.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0020 a0001c0001t0002 a0001c0001t0013 a0001c0001t0020	a0001c0001t0002g0262 a0001c0001t0013g0303 a0001c0001t0020g0261 a0001c0001t0002g0262 a0001c0001t0013g0303 a0001c0001t0020g0261	3	352	0.0085	-26	c.-51 others(43): Show c.-51+2165_-51+2190delATATATATATATATATTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054907	ATATATAT others(19): Show ATATATATATATATATTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG04228.hp1 NA18961.hp2 others(1): Show HG01496.hp1 HG04228.hp1 NA18961.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0021 a0001c0001t0060 others(1): Show a0001c0001t0002 a0001c0001t0021 a0001c0001t0060 a0001c0001t0083	a0001c0001t0002g0245 a0001c0001t0021g0131 a0001c0001t0060g0244 others(1): Show a0001c0001t0002g0245 a0001c0001t0021g0131 a0001c0001t0060g0244 a0001c0001t0083g0093	4	352	0.0114	-26	c.-51 others(43): Show c.-51+2167_-51+2192delATATATATATATATTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054909	ATATATAT others(19): Show ATATATATATATATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0080 a0001c0001t0080	a0001c0001t0080g0225 a0001c0001t0080g0225	1	352	0.0028	-26	c.-51 others(43): Show c.-51+2169_-51+2194delATATATATATATTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054911	ATATATAT others(19): Show ATATATATATATTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0176 a0001c0001t0176	a0001c0001t0176g0216 a0001c0001t0176g0216	1	352	0.0028	-26	c.-51 others(43): Show c.-51+2171_-51+2196delATATATATATTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054913	ATATATAT others(19): Show ATATATATATTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01192.hp2 HG01361.hp1 others(6): Show HG01070.hp1 HG01192.hp2 HG01361.hp1 HG01433.hp1 HG02074.hp1 HG02559.hp1 HG02602.hp1 HG03139.hp1 NA18955.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0015 a0001c0001t0017 others(5): Show a0001c0001t0004 a0001c0001t0015 a0001c0001t0017 a0001c0001t0145 a0001c0001t0171 a0001c0001t0177 a0001c0001t0179 a0001c0001t0181	a0001c0001t0004g0205 a0001c0001t0004g0207 a0001c0001t0015g0120 others(6): Show a0001c0001t0004g0205 a0001c0001t0004g0207 a0001c0001t0015g0120 a0001c0001t0017g0208 a0001c0001t0145g0204 a0001c0001t0171g0149 a0001c0001t0177g0150 a0001c0001t0179g0206 a0001c0001t0181g0148	9	352	0.0256	-26	c.-51 others(43): Show c.-51+2173_-51+2198delATATATATTTTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054915	ATATATAT others(19): Show ATATATATTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0052 a0001c0001t0052	a0001c0001t0052g0192 a0001c0001t0052g0192	1	352	0.0028	-26	c.-51 others(43): Show c.-51+2175_-51+2200delATATATTTTTTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054917	ATATATTT others(19): Show ATATATTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG03831.hp2 NA20905.hp1 HG01515.hp1 HG03831.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0043 a0001c0001t0137 a0001c0001t0042 a0001c0001t0043 a0001c0001t0137	a0001c0001t0042g0335 a0001c0001t0043g0314 a0001c0001t0137g0087 a0001c0001t0042g0335 a0001c0001t0043g0314 a0001c0001t0137g0087	3	352	0.0085	-26	c.-51 others(43): Show c.-51+2177_-51+2202delATATTTTTTTTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054919	ATATTTTT others(19): Show ATATTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG03017.hp2 NA18952.hp1 others(2): Show HG02132.hp1 HG03017.hp2 NA18952.hp1 NA19011.hp1 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0028 a0001c0001t0043 others(2): Show a0001c0001t0014 a0001c0001t0028 a0001c0001t0043 a0001c0001t0170 a0001c0001t0173	a0001c0001t0014g0098 a0001c0001t0028g0315 a0001c0001t0043g0331 others(2): Show a0001c0001t0014g0098 a0001c0001t0028g0315 a0001c0001t0043g0331 a0001c0001t0170g0330 a0001c0001t0173g0316	5	352	0.0142	-26	c.-51 others(43): Show c.-51+2179_-51+2204delATTTTTTTTTTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC42_chr1_22047709_22106360	22054921	ATTTTTTT others(19): Show ATTTTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0020 a0001c0001t0005g0020	1	352	0.0028	-26	c.-51 others(43): Show c.-51+2204_-51+2229delTTTTTTTTTTTTTTTTTTTTTTTTTT	CDC42	ENSG00000070831.18	transcript	ENST00000656825.1	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC5L_chr6_44382706_44455425	44452867	ATGGTCTC others(19): Show ATGGTCTCACTCCATCCTGCCCAGGAG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0270 a0001c0002t0002g0270	1	352	0.0028	-26	c.61 others(37): Show c.6157_*6182delTGGTCTCACTCCATCCTGCCCAGGAG	CDC5L	ENSG00000096401.8	transcript	ENST00000371477.4	protein_coding		2443		chr6	TogoVar
CDC73_chr1_193117031_193259815	193161730	ATATATAA others(19): Show ATATATAATATATATCATATTATATTG	A A	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02055.hp1 HG01496.hp2 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0076 a0001c0001t0001g0045 a0001c0001t0001g0076	2	274	0.0073	-26	c.972 others(43): Show c.972+9644_972+9669delTATATTGTATATAATATATATCATAT	CDC73	ENSG00000134371.14	transcript	ENST00000367435.5	protein_coding	10/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
CDC7_chr1_91495851_91530764	91530720	ACAACAAC others(19): Show ACAACAACAATCAGGTCTATTTCATGC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp2 HG01433.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0181 a0001c0002t0002g0181	1	394	0.0025	-26	c.62 others(37): Show c.6286_*6311delCAACAACAATCAGGTCTATTTCATGC	CDC7	ENSG00000097046.13	transcript	ENST00000234626.11	protein_coding		4957		chr1	TogoVar
CDCA7L_chr7_21895899_21950899	21911003	ATAATTTT others(19): Show ATAATTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03471.hp1 NA18906.hp1 others(1): Show HG03139.hp2 HG03471.hp1 NA18906.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0067 a0001c0001t0010g0068 a0001c0001t0010g0069 others(1): Show a0001c0001t0010g0067 a0001c0001t0010g0068 a0001c0001t0010g0069 a0001c0001t0010g0289	4	432	0.0093	-26	c.303 others(41): Show c.303+588_303+613delAAAAAAAAAAAAAAAAAAAAAAATTA	CDCA7L	ENSG00000164649.20	transcript	ENST00000406877.8	protein_coding	3/9			chr7	TogoVar
CDH10_chr5_24482100_24649978	24511545	CAGAGAGA others(19): Show CAGAGAGAGAGAGAGAGAGAGAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02922.hp1 NA19043.hp1 HG02647.hp2 HG02922.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0264 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0264	3	290	0.0103	-26	c.815 others(39): Show c.815-57_815-32delCTCTCTCTCTCTCTCTCTCTCTCTCT	CDH10	ENSG00000040731.10	transcript	ENST00000264463.8	protein_coding	5/11			chr5	TogoVar
CDH12_chr5_21745673_22858344	22698713	ATATATAT others(19): Show ATATATATATATATATATATATAGTGT	A A	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0002 a0001c0008t0002	a0001c0008t0002g0039 a0001c0008t0002g0039	1	60	0.0167	-26	c.-52 others(49): Show c.-523+154319_-523+154344delACACTATATATATATATATATA TATA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14			chr5	TogoVar
CDH12_chr5_21745673_22858344	22698715	ATATATAT others(19): Show ATATATATATATATATATATAGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0001 a0001c0002t0007g0001	1	60	0.0167	-26	c.-52 others(49): Show c.-523+154317_-523+154342delACACACTATATATATATATATA TATA	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14			chr5	TogoVar
CDH12_chr5_21745673_22858344	22801660	TATATATA others(19): Show TATATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0025 a0001c0002t0025	a0001c0002t0025g0019 a0001c0002t0025g0019	1	60	0.0167	-26	c.-52 others(47): Show c.-523+51372_-523+51397delGTATATATATATATATATATATAT AT	CDH12	ENSG00000154162.15	transcript	ENST00000382254.6	protein_coding	1/14			chr5	TogoVar
CDH13_chr16_82621969_83805640	82842115	TATATATA others(19): Show TATATATATATATATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG03579.hp2 HG00642.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0008 a0001c0001t0007 a0001c0001t0008	a0001c0001t0007g0063 a0001c0001t0008g0066 a0001c0001t0007g0063 a0001c0001t0008g0066	2	110	0.0182	-26	c.46- others(43): Show c.46-16219_46-16194delTATATATATATATATATATATACACA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	83014802	ATGTATAT others(19): Show ATGTATATATATTTGTATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00597.hp1 HG00738.hp1 others(5): Show HG00438.hp2 HG00597.hp1 HG00738.hp1 HG01175.hp2 HG02027.hp1 HG02717.hp1 HG03491.hp2 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0010 a0001c0002 a0001c0004 a0001c0010	a0001c0002t0001 a0001c0002t0005 a0001c0002t0013 others(4): Show a0001c0002t0001 a0001c0002t0005 a0001c0002t0013 a0001c0004t0003 a0001c0004t0016 a0001c0004t0030 a0001c0010t0003	a0001c0002t0001g0025 a0001c0002t0001g0030 a0001c0002t0005g0082 others(5): Show a0001c0002t0001g0025 a0001c0002t0001g0030 a0001c0002t0005g0082 a0001c0002t0013g0092 a0001c0004t0003g0103 a0001c0004t0016g0056 a0001c0004t0030g0102 a0001c0010t0003g0062	8	110	0.0727	-26	c.158 others(45): Show c.158-17170_158-17145delTTGTATATATATATTTGTATATATAT	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	83134568	AGAGAGAG others(19): Show AGAGAGAGAGAGAGAGAGAGAGAGAGT	A A	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0022 a0001c0002t0022	a0001c0002t0022g0031 a0001c0002t0022g0031	1	110	0.0091	-26	c.483 others(43): Show c.483+9071_483+9096delAGAGAGAGAGAGAGAGAGAGAGTGAG	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
CDH13_chr16_82621969_83805640	83216397	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0030 a0001c0002t0001g0030	1	110	0.0091	-26	c.484 others(41): Show c.484-926_484-901delTATATATATATATATATATATATATA	CDH13	ENSG00000140945.17	transcript	ENST00000567109.6	protein_coding	4/13		INFO_REALIGN_3_PRIME	chr16	TogoVar

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