Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact

Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CSHL1_chr17_63904608_63916258	63912803	TTCTTTCT others(19): Show TTCTTTCTTTCTTTCTTTCTTTCTTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0007 a0002c0002t0003g0007	1	435	0.0023	-26	c.-16 others(37): Show c.-1633_-1608delGAAAGAAAGAAAGAAAGAAAGAAAGA	CSHL1	ENSG00000204414.14	transcript	ENST00000309894.6	protein_coding		1546		chr17	TogoVar
CSMD1_chr8_2930361_4999914	3182578	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00423.hp1 HG00438.hp1 others(9): Show HG00099.hp1 HG00423.hp1 HG00438.hp1 HG01243.hp2 HG01261.hp1 HG01934.hp2 HG02056.hp1 HG02056.hp2 HG02129.hp2 HG02486.hp1 HG03834.hp1 NA18982.hp1	a0001 a0003 a0009 others(3): Show a0001 a0003 a0009 a0010 a0014 a0017	a0001c0002 a0001c0007 a0001c0071 others(9): Show a0001c0002 a0001c0007 a0001c0071 a0001c0094 a0001c0108 a0003c0086 a0003c0087 a0003c0099 a0009c0097 a0010c0096 a0014c0098 a0017c0101	a0001c0002t0002 a0001c0007t0032 a0001c0071t0067 others(9): Show a0001c0002t0002 a0001c0007t0032 a0001c0071t0067 a0001c0094t0002 a0001c0108t0054 a0003c0086t0002 a0003c0087t0001 a0003c0099t0012 a0009c0097t0017 a0010c0096t0065 a0014c0098t0027 a0017c0101t0008	a0001c0002t0002g0083 a0001c0007t0032g0033 a0001c0071t0067g0115 others(9): Show a0001c0002t0002g0083 a0001c0007t0032g0033 a0001c0071t0067g0115 a0001c0094t0002g0110 a0001c0108t0054g0074 a0003c0086t0002g0118 a0003c0087t0001g0022 a0003c0099t0012g0020 a0009c0097t0017g0089 a0010c0096t0065g0116 a0014c0098t0027g0019 a0017c0101t0008g0023	12	31	0.3871	-26	c.562 others(45): Show c.5621-1390_5621-1365delCACACACACACACACACACACACACA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	36/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3237846	CTTATACT others(19): Show CTTATACTATAAATATAATTTTTATAA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG01255.hp1 HG01884.hp2 others(27): Show HG00438.hp2 HG01255.hp1 HG01884.hp2 HG02055.hp1 HG02056.hp2 HG02258.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp2 HG02723.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp2 HG03017.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp2 HG03225.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG04228.hp1 NA18522.hp1 NA18979.hp1 NA18982.hp2 NA19030.hp2 NA19043.hp2 NA19240.hp1	a0001 a0002 a0004 others(12): Show a0001 a0002 a0004 a0005 a0007 a0016 a0025 a0026 a0027 a0028 a0029 a0031 a0032 a0035 a0038	a0001c0001 a0001c0002 a0001c0005 others(27): Show a0001c0001 a0001c0002 a0001c0005 a0001c0025 a0001c0033 a0001c0039 a0001c0050 a0001c0071 a0001c0081 a0001c0085 a0001c0114 a0002c0022 a0002c0031 a0002c0036 a0002c0053 a0002c0078 a0004c0034 a0005c0065 a0007c0083 a0007c0116 a0016c0028 a0025c0066 a0026c0100 a0027c0110 a0028c0044 a0029c0027 a0031c0113 a0032c0024 a0035c0023 a0038c0104	a0001c0001t0002 a0001c0002t0026 a0001c0005t0002 others(27): Show a0001c0001t0002 a0001c0002t0026 a0001c0005t0002 a0001c0025t0003 a0001c0033t0003 a0001c0039t0064 a0001c0050t0052 a0001c0071t0067 a0001c0081t0036 a0001c0085t0020 a0001c0114t0003 a0002c0022t0035 a0002c0031t0015 a0002c0036t0030 a0002c0053t0022 a0002c0078t0044 a0004c0034t0029 a0005c0065t0023 a0007c0083t0004 a0007c0116t0004 a0016c0028t0024 a0025c0066t0010 a0026c0100t0016 a0027c0110t0074 a0028c0044t0071 a0029c0027t0003 a0031c0113t0013 a0032c0024t0077 a0035c0023t0001 a0038c0104t0069	a0001c0001t0002g0125 a0001c0002t0026g0005 a0001c0005t0002g0111 others(27): Show a0001c0001t0002g0125 a0001c0002t0026g0005 a0001c0005t0002g0111 a0001c0025t0003g0077 a0001c0033t0003g0059 a0001c0039t0064g0080 a0001c0050t0052g0120 a0001c0071t0067g0115 a0001c0081t0036g0030 a0001c0085t0020g0060 a0001c0114t0003g0119 a0002c0022t0035g0048 a0002c0031t0015g0001 a0002c0036t0030g0009 a0002c0053t0022g0041 a0002c0078t0044g0064 a0004c0034t0029g0038 a0005c0065t0023g0050 a0007c0083t0004g0006 a0007c0116t0004g0039 a0016c0028t0024g0040 a0025c0066t0010g0032 a0026c0100t0016g0121 a0027c0110t0074g0082 a0028c0044t0071g0085 a0029c0027t0003g0099 a0031c0113t0013g0043 a0032c0024t0077g0104 a0035c0023t0001g0052 a0038c0104t0069g0058	30	126	0.2381	-26	c.415 others(45): Show c.4154-7641_4154-7616delTTATAAAAATTATATTTATAGTATAA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	26/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3262184	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02257.hp2 HG02723.hp1 others(1): Show HG01934.hp1 HG02257.hp2 HG02723.hp1 NA19060.hp1	a0001 a0002 a0021 a0001 a0002 a0021	a0001c0003 a0001c0007 a0002c0075 others(1): Show a0001c0003 a0001c0007 a0002c0075 a0021c0038	a0001c0003t0019 a0001c0007t0001 a0002c0075t0028 others(1): Show a0001c0003t0019 a0001c0007t0001 a0002c0075t0028 a0021c0038t0075	a0001c0003t0019g0107 a0001c0007t0001g0035 a0002c0075t0028g0051 others(1): Show a0001c0003t0019g0107 a0001c0007t0001g0035 a0002c0075t0028g0051 a0021c0038t0075g0067	4	74	0.0541	-26	c.415 others(47): Show c.4153+21934_4153+21959delATATATATATATATATATATATAT AT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	26/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3306785	CTATGGTT others(19): Show CTATGGTTTTGGAGACAGATTTCTGAG	C C	intron_variant intron_variant	MODIFIER	NA19090.hp1 NA19090.hp1	a0001 a0001	a0001c0102 a0001c0102	a0001c0102t0005 a0001c0102t0005	a0001c0102t0005g0034 a0001c0102t0005g0034	1	126	0.0079	-26	c.395 others(43): Show c.3950+884_3950+909delCTCAGAAATCTGTCTCCAAAACCATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	25/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3388896	TACACACA others(19): Show TACACACACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01074.hp1 HG01081.hp1 others(34): Show HG00735.hp1 HG01074.hp1 HG01081.hp1 HG01081.hp2 HG01243.hp1 HG01261.hp2 HG01884.hp2 HG02258.hp1 HG02559.hp1 HG02615.hp2 HG02683.hp1 HG02723.hp2 HG02922.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp2 HG03669.hp2 HG03710.hp2 HG04204.hp2 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18983.hp1 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA20129.hp1 NA20129.hp2	a0001 a0002 a0004 others(14): Show a0001 a0002 a0004 a0005 a0011 a0012 a0013 a0015 a0022 a0029 a0030 a0031 a0032 a0033 a0035 a0038 a0039	a0001c0001 a0001c0004 a0001c0017 others(31): Show a0001c0001 a0001c0004 a0001c0017 a0001c0019 a0001c0020 a0001c0021 a0001c0026 a0001c0059 a0001c0061 a0001c0068 a0001c0111 a0001c0114 a0002c0012 a0002c0015 a0002c0022 a0002c0032 a0002c0060 a0004c0014 a0005c0064 a0005c0065 a0005c0107 a0011c0016 a0012c0011 a0013c0018 a0015c0063 a0022c0062 a0029c0027 a0030c0106 a0031c0113 a0032c0024 a0033c0013 a0035c0023 a0038c0104 a0039c0010	a0001c0001t0002 a0001c0001t0038 a0001c0004t0020 others(33): Show a0001c0001t0002 a0001c0001t0038 a0001c0004t0020 a0001c0004t0063 a0001c0017t0005 a0001c0019t0078 a0001c0020t0018 a0001c0021t0005 a0001c0026t0007 a0001c0059t0001 a0001c0061t0001 a0001c0068t0015 a0001c0111t0045 a0001c0114t0003 a0002c0012t0016 a0002c0015t0021 a0002c0022t0035 a0002c0032t0053 a0002c0060t0007 a0004c0014t0055 a0005c0064t0050 a0005c0065t0023 a0005c0107t0066 a0011c0016t0048 a0012c0011t0072 a0013c0018t0058 a0015c0063t0010 a0022c0062t0057 a0029c0027t0003 a0030c0106t0014 a0031c0113t0013 a0032c0024t0077 a0033c0013t0006 a0035c0023t0001 a0038c0104t0069 a0039c0010t0068	a0001c0001t0002g0102 a0001c0001t0002g0125 a0001c0001t0038g0017 others(34): Show a0001c0001t0002g0102 a0001c0001t0002g0125 a0001c0001t0038g0017 a0001c0004t0020g0086 a0001c0004t0063g0095 a0001c0017t0005g0003 a0001c0019t0078g0105 a0001c0020t0018g0065 a0001c0021t0005g0012 a0001c0026t0007g0093 a0001c0059t0001g0036 a0001c0061t0001g0021 a0001c0068t0015g0049 a0001c0111t0045g0063 a0001c0114t0003g0119 a0002c0012t0016g0088 a0002c0015t0021g0008 a0002c0022t0035g0048 a0002c0032t0053g0061 a0002c0060t0007g0094 a0004c0014t0055g0056 a0005c0064t0050g0078 a0005c0065t0023g0050 a0005c0107t0066g0073 a0011c0016t0048g0106 a0012c0011t0072g0101 a0013c0018t0058g0068 a0015c0063t0010g0045 a0022c0062t0057g0062 a0029c0027t0003g0099 a0030c0106t0014g0042 a0031c0113t0013g0043 a0032c0024t0077g0104 a0033c0013t0006g0112 a0035c0023t0001g0052 a0038c0104t0069g0058 a0039c0010t0068g0084	37	47	0.7872	-26	c.259 others(45): Show c.2594-1240_2594-1215delGTGTGTGTGTGTGTGTGTGTGTGTGT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	17/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3699882	GCTACATC others(19): Show GCTACATCCCTGGGTTATATCCCATAA	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG01255.hp1 HG01255.hp2 others(9): Show HG00438.hp1 HG01255.hp1 HG01255.hp2 HG02615.hp2 HG02622.hp1 HG02886.hp1 HG03098.hp2 HG03209.hp2 HG03710.hp1 NA18983.hp1 NA19060.hp1 NA19090.hp2	a0001 a0002 a0027 a0001 a0002 a0027	a0001c0004 a0001c0006 a0001c0007 others(9): Show a0001c0004 a0001c0006 a0001c0007 a0001c0039 a0001c0049 a0001c0061 a0001c0094 a0002c0030 a0002c0031 a0002c0060 a0002c0092 a0027c0110	a0001c0004t0063 a0001c0006t0060 a0001c0007t0001 others(9): Show a0001c0004t0063 a0001c0006t0060 a0001c0007t0001 a0001c0039t0064 a0001c0049t0002 a0001c0061t0001 a0001c0094t0002 a0002c0030t0018 a0002c0031t0015 a0002c0060t0007 a0002c0092t0001 a0027c0110t0074	a0001c0004t0063g0095 a0001c0006t0060g0103 a0001c0007t0001g0035 others(9): Show a0001c0004t0063g0095 a0001c0006t0060g0103 a0001c0007t0001g0035 a0001c0039t0064g0080 a0001c0049t0002g0071 a0001c0061t0001g0021 a0001c0094t0002g0110 a0002c0030t0018g0122 a0002c0031t0015g0001 a0002c0060t0007g0094 a0002c0092t0001g0011 a0027c0110t0074g0082	12	114	0.1053	-26	c.100 others(45): Show c.1009+8506_1009+8531delTTATGGGATATAACCCAGGGATGTAG	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	7/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3729936	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAAAAAAC	A A	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG01071.hp1 others(5): Show HG00438.hp1 HG00438.hp2 HG01071.hp1 HG03017.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp1 NA19090.hp2	a0001 a0002 a0026 a0001 a0002 a0026	a0001c0061 a0001c0080 a0001c0081 others(5): Show a0001c0061 a0001c0080 a0001c0081 a0001c0094 a0002c0036 a0002c0041 a0002c0092 a0026c0100	a0001c0061t0001 a0001c0080t0041 a0001c0081t0036 others(5): Show a0001c0061t0001 a0001c0080t0041 a0001c0081t0036 a0001c0094t0002 a0002c0036t0030 a0002c0041t0025 a0002c0092t0001 a0026c0100t0016	a0001c0061t0001g0021 a0001c0080t0041g0025 a0001c0081t0036g0030 others(5): Show a0001c0061t0001g0021 a0001c0080t0041g0025 a0001c0081t0036g0030 a0001c0094t0002g0110 a0002c0036t0030g0009 a0002c0041t0025g0018 a0002c0092t0001g0011 a0026c0100t0016g0121	8	126	0.0635	-26	c.932 others(45): Show c.932-21471_932-21446delGTTTTTTTTTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	6/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3838670	TAATATTA others(19): Show TAATATTATATAGTATAATATATAATA	T T	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02622.hp2 HG03139.hp1 others(7): Show HG02615.hp2 HG02622.hp2 HG03139.hp1 HG03195.hp2 HG03209.hp2 HG03540.hp2 NA18906.hp1 NA18984.hp1 NA19030.hp2 NA19240.hp2	a0001 a0002 a0020 others(3): Show a0001 a0002 a0020 a0029 a0031 a0038	a0001c0004 a0001c0045 a0001c0059 others(7): Show a0001c0004 a0001c0045 a0001c0059 a0002c0032 a0002c0060 a0002c0074 a0020c0112 a0029c0027 a0031c0113 a0038c0104	a0001c0004t0063 a0001c0045t0014 a0001c0059t0001 others(7): Show a0001c0004t0063 a0001c0045t0014 a0001c0059t0001 a0002c0032t0053 a0002c0060t0007 a0002c0074t0040 a0020c0112t0081 a0029c0027t0003 a0031c0113t0013 a0038c0104t0069	a0001c0004t0063g0095 a0001c0045t0014g0010 a0001c0059t0001g0036 others(7): Show a0001c0004t0063g0095 a0001c0045t0014g0010 a0001c0059t0001g0036 a0002c0032t0053g0061 a0002c0060t0007g0094 a0002c0074t0040g0031 a0020c0112t0081g0090 a0029c0027t0003g0099 a0031c0113t0013g0043 a0038c0104t0069g0058	10	93	0.1075	-26	c.819 others(45): Show c.819-84654_819-84629delTATTATATATTATACTATATAATATT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	5/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	3926082	TACACACA others(19): Show TACACACACACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 NA19043.hp1 HG02486.hp2 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0093 a0002c0070 a0001c0093 a0002c0070	a0001c0093t0009 a0002c0070t0046 a0001c0093t0009 a0002c0070t0046	a0001c0093t0009g0007 a0002c0070t0046g0092 a0001c0093t0009g0007 a0002c0070t0046g0092	2	73	0.0274	-26	c.818 others(45): Show c.818+71795_818+71820delGTGTGTGTGTGTGTGTGTGTGTGTGT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	5/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4078917	ATATATAT others(19): Show ATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00423.hp1 HG00423.hp2 others(48): Show HG00099.hp2 HG00423.hp1 HG00423.hp2 HG00735.hp2 HG01071.hp2 HG01074.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp1 HG01261.hp2 HG01934.hp1 HG01934.hp2 HG02056.hp2 HG02074.hp1 HG02129.hp1 HG02129.hp2 HG02257.hp2 HG02280.hp1 HG02559.hp2 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02965.hp2 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp2 HG03710.hp1 HG03710.hp2 HG04204.hp1 HG04228.hp1 HG04228.hp2 NA18971.hp1 NA18971.hp2 NA18979.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18984.hp2 NA18995.hp2 NA19060.hp1 NA19074.hp1 NA19074.hp2 NA19090.hp2 NA20129.hp1 NA20129.hp2	a0001 a0002 a0003 others(12): Show a0001 a0002 a0003 a0010 a0014 a0015 a0020 a0023 a0025 a0029 a0033 a0034 a0036 a0037 a0039	a0001c0001 a0001c0002 a0001c0003 others(45): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0007 a0001c0021 a0001c0025 a0001c0026 a0001c0039 a0001c0043 a0001c0047 a0001c0049 a0001c0059 a0001c0061 a0001c0071 a0001c0073 a0001c0079 a0001c0080 a0001c0090 a0001c0103 a0001c0108 a0001c0111 a0002c0012 a0002c0037 a0002c0053 a0002c0074 a0002c0075 a0002c0076 a0002c0077 a0002c0078 a0002c0089 a0002c0092 a0003c0056 a0003c0086 a0003c0099 a0010c0096 a0014c0098 a0015c0063 a0020c0112 a0023c0069 a0025c0066 a0029c0027 a0033c0013 a0034c0055 a0036c0095 a0037c0009 a0039c0010	a0001c0001t0002 a0001c0002t0026 a0001c0002t0061 others(48): Show a0001c0001t0002 a0001c0002t0026 a0001c0002t0061 a0001c0003t0011 a0001c0003t0019 a0001c0005t0006 a0001c0006t0060 a0001c0007t0001 a0001c0007t0032 a0001c0021t0005 a0001c0025t0003 a0001c0026t0007 a0001c0039t0064 a0001c0043t0031 a0001c0047t0012 a0001c0049t0002 a0001c0059t0001 a0001c0061t0001 a0001c0071t0067 a0001c0073t0006 a0001c0079t0070 a0001c0080t0041 a0001c0090t0001 a0001c0103t0033 a0001c0108t0054 a0001c0111t0045 a0002c0012t0016 a0002c0037t0009 a0002c0053t0022 a0002c0074t0040 a0002c0075t0028 a0002c0076t0039 a0002c0077t0001 a0002c0078t0044 a0002c0089t0001 a0002c0092t0001 a0003c0056t0062 a0003c0086t0002 a0003c0099t0012 a0010c0096t0065 a0014c0098t0027 a0015c0063t0010 a0020c0112t0081 a0023c0069t0043 a0025c0066t0010 a0029c0027t0003 a0033c0013t0006 a0034c0055t0034 a0036c0095t0002 a0037c0009t0001 a0039c0010t0068	a0001c0001t0002g0125 a0001c0002t0026g0005 a0001c0002t0061g0069 others(48): Show a0001c0001t0002g0125 a0001c0002t0026g0005 a0001c0002t0061g0069 a0001c0003t0011g0026 a0001c0003t0019g0107 a0001c0005t0006g0070 a0001c0006t0060g0103 a0001c0007t0001g0035 a0001c0007t0032g0033 a0001c0021t0005g0012 a0001c0025t0003g0077 a0001c0026t0007g0093 a0001c0039t0064g0080 a0001c0043t0031g0044 a0001c0047t0012g0024 a0001c0049t0002g0071 a0001c0059t0001g0036 a0001c0061t0001g0021 a0001c0071t0067g0115 a0001c0073t0006g0108 a0001c0079t0070g0113 a0001c0080t0041g0025 a0001c0090t0001g0027 a0001c0103t0033g0028 a0001c0108t0054g0074 a0001c0111t0045g0063 a0002c0012t0016g0088 a0002c0037t0009g0046 a0002c0053t0022g0041 a0002c0074t0040g0031 a0002c0075t0028g0051 a0002c0076t0039g0014 a0002c0077t0001g0016 a0002c0078t0044g0064 a0002c0089t0001g0037 a0002c0092t0001g0011 a0003c0056t0062g0072 a0003c0086t0002g0118 a0003c0099t0012g0020 a0010c0096t0065g0116 a0014c0098t0027g0019 a0015c0063t0010g0045 a0020c0112t0081g0090 a0023c0069t0043g0100 a0025c0066t0010g0032 a0029c0027t0003g0099 a0033c0013t0006g0112 a0034c0055t0034g0047 a0036c0095t0002g0124 a0037c0009t0001g0002 a0039c0010t0068g0084	51	126	0.4048	-26	c.416 others(45): Show c.416-46844_416-46819delCATATATATATATATATATATATATA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	3/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4295188	TTATGCAC others(19): Show TTATGCACATATAATCTTAAGATTTTC	T T	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG02056.hp1 HG02074.hp1 others(2): Show HG00423.hp2 HG02056.hp1 HG02074.hp1 HG02129.hp1 NA18983.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0079 a0001c0103 others(2): Show a0001c0002 a0001c0079 a0001c0103 a0001c0105 a0002c0089	a0001c0002t0002 a0001c0079t0070 a0001c0103t0033 others(2): Show a0001c0002t0002 a0001c0079t0070 a0001c0103t0033 a0001c0105t0001 a0002c0089t0001	a0001c0002t0002g0083 a0001c0079t0070g0113 a0001c0103t0033g0028 others(2): Show a0001c0002t0002g0083 a0001c0079t0070g0113 a0001c0103t0033g0028 a0001c0105t0001g0029 a0002c0089t0001g0037	5	57	0.0877	-26	c.415 others(47): Show c.415+124739_415+124764delGAAAATCTTAAGATTATATGTGCA TA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	3/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4342207	GTGTGTGT others(19): Show GTGTGTGTGTGTGTGTGTGTGTGTGTC	G G	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01243.hp1 HG01884.hp2 others(12): Show HG01123.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02258.hp1 HG02280.hp1 HG02451.hp2 HG02559.hp2 HG03139.hp2 HG03516.hp1 HG03579.hp1 NA18522.hp1 NA19030.hp1 NA19240.hp1 NA20129.hp2	a0001 a0002 a0004 others(5): Show a0001 a0002 a0004 a0005 a0006 a0007 a0016 a0035	a0001c0019 a0001c0033 a0001c0043 others(12): Show a0001c0019 a0001c0033 a0001c0043 a0001c0085 a0001c0111 a0001c0114 a0002c0022 a0002c0053 a0004c0014 a0005c0064 a0006c0008 a0007c0083 a0007c0116 a0016c0028 a0035c0023	a0001c0019t0078 a0001c0033t0003 a0001c0043t0031 others(12): Show a0001c0019t0078 a0001c0033t0003 a0001c0043t0031 a0001c0085t0020 a0001c0111t0045 a0001c0114t0003 a0002c0022t0035 a0002c0053t0022 a0004c0014t0055 a0005c0064t0050 a0006c0008t0082 a0007c0083t0004 a0007c0116t0004 a0016c0028t0024 a0035c0023t0001	a0001c0019t0078g0105 a0001c0033t0003g0059 a0001c0043t0031g0044 others(12): Show a0001c0019t0078g0105 a0001c0033t0003g0059 a0001c0043t0031g0044 a0001c0085t0020g0060 a0001c0111t0045g0063 a0001c0114t0003g0119 a0002c0022t0035g0048 a0002c0053t0022g0041 a0004c0014t0055g0056 a0005c0064t0050g0078 a0006c0008t0082g0126 a0007c0083t0004g0006 a0007c0116t0004g0039 a0016c0028t0024g0040 a0035c0023t0001g0052	15	126	0.1190	-26	c.415 others(45): Show c.415+77720_415+77745delGACACACACACACACACACACACACA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	3/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4446733	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGTGTGTCTGTG	C C	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG03130.hp1 HG03579.hp2 HG02965.hp2 HG03130.hp1 HG03579.hp2	a0001 a0025 a0032 a0001 a0025 a0032	a0001c0026 a0025c0066 a0032c0024 a0001c0026 a0025c0066 a0032c0024	a0001c0026t0007 a0025c0066t0010 a0032c0024t0077 a0001c0026t0007 a0025c0066t0010 a0032c0024t0077	a0001c0026t0007g0093 a0025c0066t0010g0032 a0032c0024t0077g0104 a0001c0026t0007g0093 a0025c0066t0010g0032 a0032c0024t0077g0104	3	122	0.0246	-26	c.303 others(45): Show c.303-26694_303-26669delCACAGACACACACACACACACACACA	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4484980	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0018 a0001c0020t0018	a0001c0020t0018g0065 a0001c0020t0018g0065	1	12	0.0833	-26	c.303 others(45): Show c.303-64941_303-64916delTTTTTTTTTTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4486162	CATATATA others(19): Show CATATATATATATACATACATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0022 a0022	a0022c0062 a0022c0062	a0022c0062t0057 a0022c0062t0057	a0022c0062t0057g0062 a0022c0062t0057g0062	1	118	0.0085	-26	c.303 others(45): Show c.303-66123_303-66098delATATATATGTATGTATATATATATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4486174	TACATACA others(19): Show TACATACATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0009 a0009	a0009c0097 a0009c0097	a0009c0097t0017 a0009c0097t0017	a0009c0097t0017g0089 a0009c0097t0017g0089	1	125	0.0080	-26	c.303 others(45): Show c.303-66135_303-66110delGTATATATATATATATATATGTATGT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4486180	CATATATA others(19): Show CATATATATATATATATATACATACAT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03225.hp2 HG02258.hp1 HG03225.hp2	a0001 a0001	a0001c0025 a0001c0114 a0001c0025 a0001c0114	a0001c0025t0003 a0001c0114t0003 a0001c0025t0003 a0001c0114t0003	a0001c0025t0003g0077 a0001c0114t0003g0119 a0001c0025t0003g0077 a0001c0114t0003g0119	2	121	0.0165	-26	c.303 others(45): Show c.303-66141_303-66116delATGTATGTATATATATATATATATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4565749	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG03130.hp1 HG06807.hp2 HG01123.hp1 HG03130.hp1 HG06807.hp2	a0001 a0006 a0001 a0006	a0001c0026 a0001c0068 a0006c0008 a0001c0026 a0001c0068 a0006c0008	a0001c0026t0007 a0001c0068t0015 a0006c0008t0082 a0001c0026t0007 a0001c0068t0015 a0006c0008t0082	a0001c0026t0007g0093 a0001c0068t0015g0049 a0006c0008t0082g0126 a0001c0026t0007g0093 a0001c0068t0015g0049 a0006c0008t0082g0126	3	15	0.2000	-26	c.302 others(45): Show c.302+71567_302+71592delATATATATATATATATATATATATAT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	2/69			chr8	TogoVar
CSMD1_chr8_2930361_4999914	4707886	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03540.hp2 NA18522.hp2 HG03540.hp2 NA18522.hp2	a0002 a0031 a0002 a0031	a0002c0072 a0031c0113 a0002c0072 a0031c0113	a0002c0072t0003 a0031c0113t0013 a0002c0072t0003 a0031c0113t0013	a0002c0072t0003g0066 a0031c0113t0013g0043 a0002c0072t0003g0066 a0031c0113t0013g0043	2	5	0.4000	-26	c.86- others(43): Show c.86-70354_86-70329delTTTTTTTTTTTTTTTTTTTTTTTTTT	CSMD1	ENSG00000183117.20	transcript	ENST00000635120.2	protein_coding	1/69			chr8	TogoVar
CSMD2_chr1_33508998_34170230	33707693	GCGCACAC others(19): Show GCGCACACACACACACACACACACACA	G G	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG03195.hp1 HG02717.hp1 HG03195.hp1	a0004 a0008 a0004 a0008	a0004c0051 a0008c0025 a0004c0051 a0008c0025	a0004c0051t0001 a0008c0025t0001 a0004c0051t0001 a0008c0025t0001	a0004c0051t0001g0019 a0008c0025t0001g0042 a0004c0051t0001g0019 a0008c0025t0001g0042	2	56	0.0357	-26	c.357 others(45): Show c.3576+1370_3576+1395delTGTGTGTGTGTGTGTGTGTGTGTGCG	CSMD2	ENSG00000121904.19	transcript	ENST00000373381.9	protein_coding	22/70			chr1	TogoVar
CSMD2_chr1_33508998_34170230	33989013	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0005 a0005	a0005c0015 a0005c0015	a0005c0015t0001 a0005c0015t0001	a0005c0015t0001g0022 a0005c0015t0001g0022	1	6	0.1667	-26	c.517 others(45): Show c.517+43555_517+43580delATATATATATATATATATATATATAT	CSMD2	ENSG00000121904.19	transcript	ENST00000373381.9	protein_coding	3/70			chr1	TogoVar
CSMD3_chr8_112217928_113441939	112342975	ATATATAT others(19): Show ATATATATATATTTATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0051 a0002c0003t0002g0051	1	78	0.0128	-26	c.644 others(45): Show c.6443-1315_6443-1290delAATATATATATATAAATATATATATA	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	41/70			chr8	TogoVar
CSMD3_chr8_112217928_113441939	113112386	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA19063.hp1 NA19063.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0001 a0002c0005t0001	a0002c0005t0001g0033 a0002c0005t0001g0033	1	8	0.1250	-26	c.710 others(45): Show c.710-13449_710-13424delATATATATATATATATATATATATAT	CSMD3	ENSG00000164796.18	transcript	ENST00000297405.10	protein_coding	4/70			chr8	TogoVar
CSNK1A1_chr5_149487982_149556439	149542614	ATATATAT others(19): Show ATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp1 HG02451.hp2 others(3): Show HG01069.hp1 HG01071.hp1 HG02451.hp2 HG02615.hp2 HG02970.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0009 a0001c0001t0013 others(1): Show a0001c0001t0003 a0001c0001t0009 a0001c0001t0013 a0001c0001t0036	a0001c0001t0003g0223 a0001c0001t0009g0235 a0001c0001t0009g0265 others(3): Show a0001c0001t0003g0223 a0001c0001t0009g0235 a0001c0001t0009g0265 a0001c0001t0009g0266 a0001c0001t0013g0120 a0001c0001t0036g0219	6	385	0.0156	-26	c.230 others(43): Show c.230+7435_230+7460delCATATATATATATATATATATATATA	CSNK1A1	ENSG00000113712.19	transcript	ENST00000377843.8	protein_coding	2/9			chr5	TogoVar
CSNK1G1_chr15_64160525_64361173	64277638	AATATATT others(19): Show AATATATTTAATAATATAGCAATATTG	A A	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp2 HG02109.hp1 others(28): Show HG01167.hp2 HG01169.hp2 HG02109.hp1 HG02258.hp2 HG02280.hp2 HG02451.hp1 HG02486.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02717.hp1 HG02723.hp2 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03225.hp2 HG03471.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp1 HG06807.hp2 NA18939.hp2 NA18957.hp2 NA19002.hp2 NA19030.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 others(8): Show a0001c0001t0003 a0001c0001t0005 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0026 a0001c0001t0036 a0001c0004t0035	a0001c0001t0003g0146 a0001c0001t0003g0147 a0001c0001t0003g0148 others(28): Show a0001c0001t0003g0146 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0001t0003g0153 a0001c0001t0003g0154 a0001c0001t0003g0155 a0001c0001t0003g0156 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0005g0166 a0001c0001t0005g0167 a0001c0001t0005g0169 a0001c0001t0005g0170 a0001c0001t0005g0171 a0001c0001t0005g0172 a0001c0001t0005g0174 a0001c0001t0005g0175 a0001c0001t0011g0106 a0001c0001t0011g0107 a0001c0001t0011g0108 a0001c0001t0012g0116 a0001c0001t0012g0119 a0001c0001t0015g0150 a0001c0001t0021g0109 a0001c0001t0022g0168 a0001c0001t0023g0121 a0001c0001t0026g0173 a0001c0001t0036g0117 a0001c0004t0035g0118	31	167	0.1856	-26	c.182 others(45): Show c.182-18423_182-18398delCAATATTGCTATATTATTAAATATAT	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	2/11			chr15	TogoVar
CSNK1G1_chr15_64160525_64361173	64277735	TAATATTG others(19): Show TAATATTGATATATTTAATAATATAGC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG00621.hp1 others(58): Show HG00099.hp1 HG00323.hp1 HG00621.hp1 HG00733.hp2 HG01167.hp2 HG01169.hp2 HG01257.hp2 HG01496.hp2 HG01934.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02132.hp1 HG02258.hp2 HG02486.hp1 HG02486.hp2 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02717.hp1 HG02723.hp2 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG03139.hp1 HG03195.hp2 HG03225.hp2 HG03239.hp1 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp2 HG03654.hp1 HG03688.hp2 HG03834.hp1 HG03927.hp2 HG04184.hp1 HG06807.hp2 NA18939.hp1 NA18939.hp2 NA18941.hp2 NA18942.hp2 NA18957.hp1 NA18974.hp1 NA18999.hp2 NA19002.hp1 NA19002.hp2 NA19003.hp2 NA19030.hp1 NA19054.hp2 NA19067.hp1 NA19088.hp2 NA19091.hp2 NA20752.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0006	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(14): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0001t0011 a0001c0001t0015 a0001c0001t0021 a0001c0001t0022 a0001c0001t0026 a0001c0001t0031 a0001c0001t0036 a0001c0002t0001 a0001c0002t0006 a0001c0002t0025 a0001c0002t0027 a0001c0004t0035 a0002c0006t0001	a0001c0001t0001g0077 a0001c0001t0001g0097 a0001c0001t0003g0146 others(58): Show a0001c0001t0001g0077 a0001c0001t0001g0097 a0001c0001t0003g0146 a0001c0001t0003g0147 a0001c0001t0003g0148 a0001c0001t0003g0151 a0001c0001t0003g0152 a0001c0001t0003g0153 a0001c0001t0003g0154 a0001c0001t0003g0155 a0001c0001t0003g0156 a0001c0001t0003g0157 a0001c0001t0003g0158 a0001c0001t0005g0166 a0001c0001t0005g0167 a0001c0001t0005g0169 a0001c0001t0005g0170 a0001c0001t0005g0171 a0001c0001t0005g0172 a0001c0001t0005g0174 a0001c0001t0005g0175 a0001c0001t0009g0002 a0001c0001t0009g0003 a0001c0001t0009g0004 a0001c0001t0011g0107 a0001c0001t0011g0108 a0001c0001t0015g0150 a0001c0001t0021g0109 a0001c0001t0022g0168 a0001c0001t0026g0173 a0001c0001t0031g0124 a0001c0001t0036g0117 a0001c0002t0001g0013 a0001c0002t0001g0014 a0001c0002t0001g0015 a0001c0002t0001g0021 a0001c0002t0001g0022 a0001c0002t0001g0024 a0001c0002t0001g0027 a0001c0002t0001g0042 a0001c0002t0001g0051 a0001c0002t0001g0052 a0001c0002t0001g0056 a0001c0002t0001g0057 a0001c0002t0001g0058 a0001c0002t0001g0060 a0001c0002t0001g0063 a0001c0002t0001g0080 a0001c0002t0001g0081 a0001c0002t0001g0082 a0001c0002t0001g0095 a0001c0002t0001g0098 a0001c0002t0001g0099 a0001c0002t0001g0100 a0001c0002t0001g0101 a0001c0002t0001g0102 a0001c0002t0006g0019 a0001c0002t0025g0054 a0001c0002t0027g0062 a0001c0004t0035g0118 a0002c0006t0001g0059	61	172	0.3547	-26	c.182 others(45): Show c.182-18520_182-18495delGCTATATTATTAAATATATCAATATT	CSNK1G1	ENSG00000169118.18	transcript	ENST00000303052.13	protein_coding	2/11			chr15	TogoVar
CSNK2A1_chr20_467498_548790	485066	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0301 a0001c0001t0031g0301	1	265	0.0038	-26	c.106 others(44): Show c.1061-1016_1061-991delTTTTTTTTTTTTTTTTTTTTTTTTTT	CSNK2A1	ENSG00000101266.19	transcript	ENST00000217244.9	protein_coding	13/13			chr20	TogoVar
CSNKA2IP_chr3_88333456_88472594	88446034	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0002 a0004c0005t0002	a0004c0005t0002g0365 a0004c0005t0002g0365	1	363	0.0028	-26	c.-27 others(47): Show c.-270-19052_-270-19027delTTCTTTCTTTCTTTCTTTCTTTCT TT	CSNKA2IP	ENSG00000283434.2	transcript	ENST00000637986.2	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
CSRP2_chr12_76853709_76884019	76869529	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG03453.hp2 HG06807.hp2 HG01261.hp1 HG03453.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0132 a0001c0001t0001g0310 a0001c0001t0001g0339 a0001c0001t0001g0132 a0001c0001t0001g0310 a0001c0001t0001g0339	3	77	0.0390	-26	c.-1- others(41): Show c.-1-3294_-1-3269delGTGTGTGTGTGTGTGTGTGTGTGTGT	CSRP2	ENSG00000175183.10	transcript	ENST00000311083.10	protein_coding	1/5			chr12	TogoVar
CSTF3_chr11_33079584_33166480	33163901	ATATATAT others(19): Show ATATATATATATATATATATATATATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp2 HG02896.hp2 NA21309.hp1 HG02647.hp2 HG02896.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0198 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0198 a0001c0001t0001g0292 a0001c0001t0001g0293	3	301	0.0100	-26	c.-26 others(37): Show c.-2602_-2577delAATATATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2422		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163905	ATATATAT others(19): Show ATATATATATATATATATATATTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0209 a0001c0001t0001g0209	1	347	0.0029	-26	c.-26 others(37): Show c.-2606_-2581delAAAAAATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2426		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163907	ATATATAT others(19): Show ATATATATATATATATATATTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp1 HG03540.hp2 HG00733.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0199 a0001c0001t0001g0213 a0001c0001t0001g0199 a0001c0001t0001g0213	2	353	0.0057	-26	c.-26 others(37): Show c.-2608_-2583delAAAAAAAATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2428		chr11	TogoVar
CT47A5_chrX_120958026_120971348	120960877	CCGACGCC others(19): Show CCGACGCCGGGTAGCGACGGGCGACCA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	1	130	0.0077	-26	c.22 others(37): Show c.2295_*2320delTGGTCGCCCGTCGCTACCCGGCGTCG	CT47A5	ENSG00000237957.6	transcript	ENST00000439466.3	protein_coding		2148		chrX	TogoVar
CTBP2_chr10_124979317_125033071	124986281	GCGCGCGC others(19): Show GCGCGCGCGCGCACACACACACACACA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG00597.hp2 others(64): Show HG00438.hp2 HG00558.hp1 HG00597.hp2 HG00621.hp2 HG01070.hp1 HG01071.hp1 HG01192.hp2 HG01255.hp1 HG01361.hp1 HG01981.hp1 HG02015.hp2 HG02027.hp2 HG02040.hp1 HG02056.hp1 HG02074.hp2 HG02129.hp2 HG02257.hp2 HG02258.hp1 HG02273.hp2 HG02300.hp2 HG02523.hp1 HG02809.hp1 HG02922.hp2 HG02970.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03225.hp2 HG03239.hp1 HG03516.hp2 HG03540.hp2 HG03654.hp2 HG06807.hp1 NA18906.hp1 NA18940.hp1 NA18942.hp2 NA18945.hp1 NA18948.hp2 NA18950.hp1 NA18952.hp1 NA18957.hp2 NA18961.hp1 NA18963.hp2 NA18964.hp1 NA18966.hp1 NA18967.hp2 NA18969.hp1 NA18975.hp1 NA18981.hp2 NA18983.hp2 NA18986.hp1 NA18994.hp1 NA19003.hp1 NA19005.hp2 NA19012.hp1 NA19043.hp2 NA19060.hp1 NA19062.hp2 NA19065.hp1 NA19077.hp1 NA19079.hp1 NA19080.hp1 NA19083.hp2 NA19089.hp1 NA19091.hp1 NA19240.hp2 NA20300.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0015	a0001c0001 a0002c0002 a0002c0010 others(6): Show a0001c0001 a0002c0002 a0002c0010 a0002c0025 a0002c0026 a0003c0004 a0004c0003 a0005c0006 a0015c0022	a0001c0001t0025 a0001c0001t0034 a0001c0001t0059 others(18): Show a0001c0001t0025 a0001c0001t0034 a0001c0001t0059 a0002c0002t0002 a0002c0002t0016 a0002c0002t0017 a0002c0002t0027 a0002c0002t0028 a0002c0002t0044 a0002c0002t0072 a0002c0002t0092 a0002c0002t0093 a0002c0002t0098 a0002c0010t0002 a0002c0025t0002 a0002c0026t0028 a0003c0004t0002 a0003c0004t0028 a0004c0003t0002 a0005c0006t0034 a0015c0022t0002	a0001c0001t0025g0092 a0001c0001t0025g0100 a0001c0001t0025g0148 others(53): Show a0001c0001t0025g0092 a0001c0001t0025g0100 a0001c0001t0025g0148 a0001c0001t0034g0096 a0001c0001t0059g0054 a0002c0002t0002g0003 a0002c0002t0002g0017 a0002c0002t0002g0020 a0002c0002t0002g0170 a0002c0002t0002g0173 a0002c0002t0002g0180 a0002c0002t0002g0183 a0002c0002t0002g0187 a0002c0002t0002g0202 a0002c0002t0002g0204 a0002c0002t0002g0206 a0002c0002t0002g0208 a0002c0002t0002g0214 a0002c0002t0002g0216 a0002c0002t0002g0217 a0002c0002t0002g0219 a0002c0002t0016g0019 a0002c0002t0016g0169 a0002c0002t0016g0175 a0002c0002t0016g0176 a0002c0002t0017g0016 a0002c0002t0017g0171 a0002c0002t0017g0172 a0002c0002t0017g0174 a0002c0002t0027g0023 a0002c0002t0027g0178 a0002c0002t0028g0218 a0002c0002t0044g0179 a0002c0002t0044g0184 a0002c0002t0072g0188 a0002c0002t0092g0203 a0002c0002t0093g0185 a0002c0002t0098g0212 a0002c0010t0002g0002 a0002c0010t0002g0165 a0002c0010t0002g0166 a0002c0025t0002g0207 a0002c0026t0028g0223 a0003c0004t0002g0004 a0003c0004t0002g0245 a0003c0004t0002g0249 a0003c0004t0002g0250 a0003c0004t0002g0254 a0003c0004t0002g0255 a0003c0004t0028g0248 a0004c0003t0002g0277 a0004c0003t0002g0282 a0004c0003t0002g0288 a0004c0003t0002g0296 a0005c0006t0034g0041 a0015c0022t0002g0160	67	307	0.2182	-26	c.32 others(37): Show c.3211_*3236delTGTGTGTGTGTGTGTGCGCGCGCGCG	CTBP2	ENSG00000175029.17	transcript	ENST00000309035.11	protein_coding	9/9	3211		chr10	TogoVar
CTCFL_chr20_57492166_57530140	57494161	TTGTGTGT others(19): Show TTGTGTGTGTGTGTGTGTGTGTGTGTG	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0011 a0001c0004t0011	a0001c0004t0011g0048 a0001c0004t0011g0048	1	267	0.0037	-26	c.43 others(37): Show c.4363_*4388delCACACACACACACACACACACACACA	CTCFL	ENSG00000124092.13	transcript	ENST00000243914.8	protein_coding		3004		chr20	TogoVar
CTCF_chr16_67557526_67644177	67563455	GGCTGGCT others(19): Show GGCTGGCTGAGCTGCTCGCACCTCTAC	G G	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0167 a0001c0001t0001g0167	1	166	0.0060	-26	c.-12 others(43): Show c.-127+736_-127+761delGCTGAGCTGCTCGCACCTCTACGCTG	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTCF_chr16_67557526_67644177	67629746	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 NA19007.hp2 HG02145.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0088 a0001c0001t0001g0078 a0001c0001t0001g0088	2	14	0.1429	-26	c.183 others(43): Show c.1837+234_1837+259delTTTTTTTTTTTTTTTTTTTTTTTTTT	CTCF	ENSG00000102974.16	transcript	ENST00000264010.10	protein_coding	10/11		INFO_REALIGN_3_PRIME	chr16	TogoVar
CTDP1_chr18_79674803_79759503	79742141	TGAGGTGG others(19): Show TGAGGTGGAGGCCTGGGGGCAGCAGAG	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0070 a0001c0003t0001g0070	1	376	0.0027	-26	c.274 others(45): Show c.2747+5623_2747+5648delGGTGGAGGCCTGGGGGCAGCAGAGGA	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDSPL2_chr15_44422629_44534038	44432300	ATATTATT others(19): Show ATATTATTATTTTATTATTATTATTAT	A A	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG03209.hp1 HG03225.hp1 others(1): Show HG02965.hp2 HG03209.hp1 HG03225.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 others(1): Show a0001c0001t0002g0020 a0001c0001t0002g0021 a0001c0001t0002g0022 a0001c0001t0002g0023	4	232	0.0172	-26	c.-25 others(43): Show c.-25+4540_-25+4565delTATTATTATTATTATTATTATTATTT	CTDSPL2	ENSG00000137770.14	transcript	ENST00000260327.9	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
CTDSPL_chr3_37856880_37989469	37986630	GCAGGACC others(19): Show GCAGGACCACAGTGGGCAAGGCAGTGA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0067 a0001c0001t0007g0067	1	164	0.0061	-26	c.57 others(37): Show c.5764_*5789delCAGGACCACAGTGGGCAAGGCAGTGA	CTDSPL	ENSG00000144677.15	transcript	ENST00000273179.10	protein_coding		2162		chr3	TogoVar
CTIF_chr18_48534031_48868217	48669790	CATTTATA others(19): Show CATTTATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0074 a0001c0001t0001g0074	1	104	0.0096	-26	c.432 others(41): Show c.432-876_432-851delTTATATATATATATATATATATATAT	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48669793	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0023 a0001c0001t0023	a0001c0001t0023g0051 a0001c0001t0023g0051	1	36	0.0278	-26	c.432 others(41): Show c.432-853_432-828delTATATATATATATATATATATATATA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTLA4_chr2_203862771_203878965	203873327	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00140.hp2 HG00408.hp1 HG00423.hp1 others(42): Show HG00140.hp2 HG00408.hp1 HG00423.hp1 HG01256.hp2 HG01358.hp2 HG01928.hp2 HG02074.hp2 HG02135.hp1 HG02135.hp2 HG02148.hp2 HG02165.hp2 HG02602.hp2 HG02630.hp2 HG02895.hp1 HG02897.hp2 HG03017.hp2 HG03130.hp1 HG03491.hp1 HG03831.hp2 HG04184.hp1 HG04228.hp1 NA18941.hp2 NA18943.hp1 NA18943.hp2 NA18947.hp1 NA18967.hp2 NA18969.hp1 NA18969.hp2 NA18971.hp2 NA18973.hp1 NA18978.hp1 NA18979.hp1 NA18983.hp1 NA18987.hp2 NA18993.hp1 NA19002.hp2 NA19004.hp2 NA19068.hp1 NA19068.hp2 NA19072.hp1 NA19080.hp2 NA19082.hp2 NA19087.hp1 NA19090.hp1 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0003 a0002c0002t0011 others(1): Show a0001c0001t0003 a0002c0002t0003 a0002c0002t0011 a0002c0002t0027	a0001c0001t0003g0002 a0002c0002t0003g0001 a0002c0002t0003g0026 others(3): Show a0001c0001t0003g0002 a0002c0002t0003g0001 a0002c0002t0003g0026 a0002c0002t0003g0032 a0002c0002t0011g0001 a0002c0002t0027g0001	45	66	0.6818	-26	c.54 others(35): Show c.546_*571delATATATATATATATATATATATATAT	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding	4/4	546	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(19): Show GTATATATATATATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	6	0.1667	-26	c.-42 others(37): Show c.-4257_-4232delTATATATATATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79552709	GCTTTTGG others(19): Show GCTTTTGGCTTGCACCCTATGAAGCAA	G G	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02148.hp2 HG00642.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0005t0002 a0001c0001t0002 a0001c0005t0002	a0001c0001t0002g0066 a0001c0005t0002g0063 a0001c0001t0002g0066 a0001c0005t0002g0063	2	68	0.0294	-26	c.-6+ others(43): Show c.-6+39504_-6+39529delTTTTGGCTTGCACCCTATGAAGCAAC	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80596279	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	4	0.2500	-26	c.218 others(45): Show c.2189+6817_2189+6842delTTTTTTTTTTTTTTTTTTTTTTTTTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	15/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA3_chr10_65907523_67701195	66346230	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG06807.hp1 NA18960.hp2 others(2): Show HG02895.hp1 HG06807.hp1 NA18960.hp2 NA18964.hp1 NA19080.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0008 a0001c0001 a0002c0002 a0005c0008	a0001c0001t0004 a0001c0001t0009 a0002c0002t0003 others(2): Show a0001c0001t0004 a0001c0001t0009 a0002c0002t0003 a0002c0002t0017 a0005c0008t0005	a0001c0001t0004g0041 a0001c0001t0009g0030 a0002c0002t0003g0042 others(2): Show a0001c0001t0004g0041 a0001c0001t0009g0030 a0002c0002t0003g0042 a0002c0002t0017g0040 a0005c0008t0005g0033	5	39	0.1282	-26	c.173 others(47): Show c.1732+32896_1732+32921delCTCTCTCTCTATATATATATATAT AT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66346232	TATATATA others(19): Show TATATATATATATATAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02818.hp2 HG02717.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0006 a0001c0004t0007 a0001c0001t0006 a0001c0004t0007	a0001c0001t0006g0027 a0001c0004t0007g0005 a0001c0001t0006g0027 a0001c0004t0007g0005	2	38	0.0526	-26	c.173 others(47): Show c.1732+32894_1732+32919delCTCTCTCTCTCTATATATATATAT AT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66346234	TATATATA others(19): Show TATATATATATATAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0009 a0001c0011t0009	a0001c0011t0009g0017 a0001c0011t0009g0017	1	42	0.0238	-26	c.173 others(47): Show c.1732+32892_1732+32917delCTCTCTCTCTCTCTATATATATAT AT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar

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