Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
L3MBTL3_chr6_130013581_130146438	130055639	CCTCCCTC others(19): Show CCTCCCTCTCTCTCCCTCCCTCCCTCT	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp2 HG01109.hp1 others(6): Show HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01175.hp1 HG01361.hp1 HG02109.hp1 HG02486.hp2 HG02622.hp1 HG03704.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0004 a0002c0001t0014 a0002c0001t0001 a0002c0001t0004 a0002c0001t0014	a0002c0001t0001g0047 a0002c0001t0001g0048 a0002c0001t0001g0049 others(6): Show a0002c0001t0001g0047 a0002c0001t0001g0048 a0002c0001t0001g0049 a0002c0001t0001g0126 a0002c0001t0004g0124 a0002c0001t0004g0125 a0002c0001t0004g0128 a0002c0001t0004g0129 a0002c0001t0014g0127	9	298	0.0302	-26	c.667 others(41): Show c.667+388_667+413delCCTCTCTCTCCCTCCCTCCCTCTCTC	L3MBTL3	ENSG00000198945.8	transcript	ENST00000361794.7	protein_coding	8/22		INFO_REALIGN_3_PRIME	chr6	TogoVar
L3MBTL4_chr18_5949717_6419911	6016989	AGTGGTAA others(19): Show AGTGGTAAATGGCCCAGAGCAGAGGGG	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01081.hp1 HG01099.hp1 others(34): Show HG00673.hp1 HG01081.hp1 HG01099.hp1 HG01099.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01952.hp2 HG01978.hp1 HG01981.hp1 HG02257.hp2 HG02258.hp2 HG02559.hp1 HG02622.hp2 HG02809.hp2 HG02818.hp1 HG02897.hp1 HG02922.hp1 HG02922.hp2 HG02970.hp1 HG02976.hp1 HG03130.hp1 HG03130.hp2 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 NA18522.hp2 NA18906.hp1 NA18975.hp1 NA18975.hp2 NA19002.hp2 NA19009.hp2 NA19030.hp2 NA19043.hp1 NA19240.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0003 a0001c0004 others(6): Show a0001c0001 a0001c0003 a0001c0004 a0001c0007 a0001c0008 a0002c0002 a0002c0006 a0003c0005 a0004c0009	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(12): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0003t0005 a0001c0004t0006 a0001c0007t0002 a0001c0008t0009 a0002c0002t0001 a0002c0006t0001 a0003c0005t0004 a0004c0009t0002	a0001c0001t0002g0003 a0001c0001t0002g0017 a0001c0001t0002g0026 others(34): Show a0001c0001t0002g0003 a0001c0001t0002g0017 a0001c0001t0002g0026 a0001c0001t0002g0029 a0001c0001t0002g0034 a0001c0001t0002g0037 a0001c0001t0002g0044 a0001c0001t0002g0065 a0001c0001t0002g0067 a0001c0001t0002g0092 a0001c0001t0003g0030 a0001c0001t0004g0007 a0001c0001t0004g0060 a0001c0001t0005g0040 a0001c0001t0005g0057 a0001c0001t0005g0088 a0001c0001t0006g0093 a0001c0001t0007g0077 a0001c0001t0008g0070 a0001c0003t0005g0002 a0001c0004t0006g0074 a0001c0007t0002g0081 a0001c0008t0009g0009 a0002c0002t0001g0001 a0002c0002t0001g0022 a0002c0002t0001g0035 a0002c0002t0001g0042 a0002c0002t0001g0053 a0002c0002t0001g0068 a0002c0002t0001g0073 a0002c0002t0001g0090 a0002c0002t0001g0091 a0002c0006t0001g0036 a0002c0006t0001g0051 a0003c0005t0004g0085 a0003c0005t0004g0086 a0004c0009t0002g0012	37	94	0.3936	-26	c.144 others(47): Show c.1445-47453_1445-47428delCCCCTCTGCTCTGGGCCATTTACC AC	L3MBTL4	ENSG00000154655.16	transcript	ENST00000317931.12	protein_coding	16/18			chr18	TogoVar
LAIR2_chr19_54497831_54515687	54514555	GTTTTTTT others(19): Show GTTTTTTTTTTTTTTTTTTTTTTTTTT	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp1 HG00733.hp2 HG01069.hp2 others(9): Show HG00642.hp1 HG00733.hp2 HG01069.hp2 HG01070.hp2 HG01071.hp2 HG01168.hp1 HG01346.hp2 HG03688.hp1 HG04184.hp2 NA18966.hp1 NA20905.hp1 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0011 a0004c0004t0001 others(1): Show a0001c0001t0001 a0001c0001t0011 a0004c0004t0001 a0004c0004t0003	a0001c0001t0001g0016 a0001c0001t0001g0044 a0001c0001t0011g0123 others(5): Show a0001c0001t0001g0016 a0001c0001t0001g0044 a0001c0001t0011g0123 a0004c0004t0001g0009 a0004c0004t0001g0061 a0004c0004t0003g0009 a0004c0004t0003g0097 a0004c0004t0003g0102	12	475	0.0253	-26	c.39 others(37): Show c.3987_*4012delTTTTTTTTTTTTTTTTTTTTTTTTTT	LAIR2	ENSG00000167618.10	transcript	ENST00000301202.7	protein_coding		3869		chr19	TogoVar
LAMA1_chr18_6936742_7122797	7117888	CCGTCCCG others(19): Show CCGTCCCGCCCCGGCTTGGCCCCGCCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02615.hp1 HG02630.hp1 others(4): Show HG02055.hp1 HG02615.hp1 HG02630.hp1 HG02723.hp1 HG02895.hp2 HG02897.hp1 NA19043.hp1	a0007 a0020 a0025 others(3): Show a0007 a0020 a0025 a0032 a0068 a0077	a0007c0163 a0020c0023 a0025c0135 others(3): Show a0007c0163 a0020c0023 a0025c0135 a0032c0009 a0068c0149 a0077c0157	a0007c0163t0002 a0020c0023t0002 a0025c0135t0002 others(3): Show a0007c0163t0002 a0020c0023t0002 a0025c0135t0002 a0032c0009t0002 a0068c0149t0002 a0077c0157t0002	a0007c0163t0002g0003 a0020c0023t0002g0009 a0020c0023t0002g0010 others(4): Show a0007c0163t0002g0003 a0020c0023t0002g0009 a0020c0023t0002g0010 a0025c0135t0002g0012 a0032c0009t0002g0008 a0068c0149t0002g0011 a0077c0157t0002g0007	7	278	0.0252	-26	c.-19 others(35): Show c.-194_-169delTGGCGGGGCCAAGCCGGGGCGGGACG	LAMA1	ENSG00000101680.16	transcript	ENST00000389658.4	protein_coding		92		chr18	TogoVar
LAMA2_chr6_128878138_129521566	128961318	GATATATA others(19): Show GATATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03130.hp1 HG03195.hp1 HG02970.hp1 HG03130.hp1 HG03195.hp1	a0002 a0011 a0022 a0002 a0011 a0022	a0002c0003 a0011c0028 a0022c0019 a0002c0003 a0011c0028 a0022c0019	a0002c0003t0005 a0011c0028t0003 a0022c0019t0002 a0002c0003t0005 a0011c0028t0003 a0022c0019t0002	a0002c0003t0005g0010 a0011c0028t0003g0011 a0022c0019t0002g0012 a0002c0003t0005g0010 a0011c0028t0003g0011 a0022c0019t0002g0012	3	88	0.0341	-26	c.112 others(45): Show c.112+77986_112+78011delATATATATATATATATATATATATAT	LAMA2	ENSG00000196569.14	transcript	ENST00000421865.3	protein_coding	1/64		INFO_REALIGN_3_PRIME	chr6	TogoVar
LAMA2_chr6_128878138_129521566	128961343	ATATATAT others(19): Show ATATATATATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0034 a0034	a0034c0055 a0034c0055	a0034c0055t0002 a0034c0055t0002	a0034c0055t0002g0030 a0034c0055t0002g0030	1	88	0.0114	-26	c.112 others(45): Show c.112+77987_112+78012delTATATATATATATATATATATATATT	LAMA2	ENSG00000196569.14	transcript	ENST00000421865.3	protein_coding	1/64			chr6	TogoVar
LAMA4_chr6_112102931_112259567	112131717	GTTTGGGT others(19): Show GTTTGGGTCAGAAGTTCTACAAAATGC	G G	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18971.hp1 NA18977.hp2 others(1): Show NA18947.hp1 NA18971.hp1 NA18977.hp2 NA19077.hp2	a0004 a0004	a0004c0007 a0004c0010 a0004c0007 a0004c0010	a0004c0007t0001 a0004c0007t0014 a0004c0010t0001 a0004c0007t0001 a0004c0007t0014 a0004c0010t0001	a0004c0007t0001g0267 a0004c0007t0001g0268 a0004c0007t0014g0300 others(1): Show a0004c0007t0001g0267 a0004c0007t0001g0268 a0004c0007t0014g0300 a0004c0010t0001g0166	4	314	0.0127	-26	c.383 others(43): Show c.3835-642_3835-617delGCATTTTGTAGAACTTCTGACCCAAA	LAMA4	ENSG00000112769.20	transcript	ENST00000230538.12	protein_coding	28/38			chr6	TogoVar
LAMA5_chr20_62304065_62372312	62315653	GCCCTTCC others(19): Show GCCCTTCCTGCAGGGTGTGCCCCAATC	G G	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0075 a0075	a0075c0110 a0075c0110	a0075c0110t0001 a0075c0110t0001	a0075c0110t0001g0162 a0075c0110t0001g0162	1	186	0.0054	-26	c.786 others(43): Show c.7867+269_7867+294delGATTGGGGCACACCCTGCAGGAAGGG	LAMA5	ENSG00000130702.15	transcript	ENST00000252999.7	protein_coding	58/79			chr20	TogoVar
LAMA5_chr20_62304065_62372312	62361582	CTGGGGCA others(19): Show CTGGGGCAGCGGCGGAGCCGGCTGGGA	C C	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0043 a0043	a0043c0097 a0043c0097	a0043c0097t0002 a0043c0097t0002	a0043c0097t0002g0088 a0043c0097t0002g0088	1	186	0.0054	-26	c.450 others(41): Show c.450+792_450+817delTCCCAGCCGGCTCCGCCGCTGCCCCA	LAMA5	ENSG00000130702.15	transcript	ENST00000252999.7	protein_coding	2/79			chr20	TogoVar
LAMB1_chr7_107918799_108008161	107976856	TCTCCTTC others(19): Show TCTCCTTCCTTCCTTCCTTTCCTCTTG	T T	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02896.hp2 HG02622.hp1 HG02896.hp2	a0001 a0028 a0001 a0028	a0001c0035 a0028c0034 a0001c0035 a0028c0034	a0001c0035t0001 a0028c0034t0001 a0001c0035t0001 a0028c0034t0001	a0001c0035t0001g0037 a0028c0034t0001g0031 a0001c0035t0001g0037 a0028c0034t0001g0031	2	364	0.0055	-26	c.100 others(44): Show c.1001-1005_1001-980delCAAGAGGAAAGGAAGGAAGGAAGGAG	LAMB1	ENSG00000091136.15	transcript	ENST00000222399.11	protein_coding	9/33			chr7	TogoVar
LAMC3_chr9_131004174_131099473	131032556	CGCTCTCT others(19): Show CGCTCTCTCTCTTGCTCTCTCTCGCTT	C C	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01361.hp2 HG02109.hp2 others(6): Show HG01106.hp2 HG01361.hp2 HG02109.hp2 HG02922.hp1 HG03098.hp1 HG03209.hp1 HG06807.hp1 NA18522.hp1 NA20129.hp1	a0015 a0021 a0031 others(3): Show a0015 a0021 a0031 a0033 a0034 a0059	a0015c0078 a0015c0080 a0015c0216 others(6): Show a0015c0078 a0015c0080 a0015c0216 a0021c0031 a0031c0019 a0033c0059 a0033c0079 a0034c0083 a0059c0209	a0015c0078t0002 a0015c0080t0002 a0015c0216t0014 others(6): Show a0015c0078t0002 a0015c0080t0002 a0015c0216t0014 a0021c0031t0002 a0031c0019t0004 a0033c0059t0004 a0033c0079t0002 a0034c0083t0001 a0059c0209t0008	a0015c0078t0002g0023 a0015c0080t0002g0198 a0015c0216t0014g0048 others(6): Show a0015c0078t0002g0023 a0015c0080t0002g0198 a0015c0216t0014g0048 a0021c0031t0002g0035 a0031c0019t0004g0010 a0033c0059t0004g0040 a0033c0079t0002g0022 a0034c0083t0001g0009 a0059c0209t0008g0357	9	360	0.0250	-26	c.809 others(41): Show c.809+389_809+414delCTCTTGCTCTCTCTCGCTTGCTCTCT	LAMC3	ENSG00000050555.19	transcript	ENST00000361069.9	protein_coding	3/27		INFO_REALIGN_3_PRIME	chr9	TogoVar
LAMP1_chr13_113292239_113328672	113301636	AAAAAAAA others(19): Show AAAAAAAAAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03579.hp1 NA18985.hp2 HG02630.hp2 HG03579.hp1 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0309 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0309	3	354	0.0085	-26	c.61+ others(41): Show c.61+4143_61+4168delAAAAAAAATATATATATATATATATA	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP1_chr13_113292239_113328672	113301638	AAAAAAAA others(19): Show AAAAAAAATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG02273.hp1 HG02572.hp1 others(7): Show HG00733.hp2 HG02273.hp1 HG02572.hp1 HG02572.hp2 HG02717.hp2 HG02922.hp2 HG03225.hp2 NA18906.hp1 NA18989.hp1 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0245 a0001c0001t0001g0246 others(7): Show a0001c0001t0001g0075 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308	10	354	0.0283	-26	c.61+ others(41): Show c.61+4145_61+4170delAAAAAATATATATATATATATATATA	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP1_chr13_113292239_113328672	113301640	AAAAAATA others(19): Show AAAAAATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00323.hp1 others(66): Show HG00099.hp1 HG00099.hp2 HG00323.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00639.hp2 HG00642.hp2 HG00673.hp2 HG00733.hp1 HG00738.hp2 HG00741.hp2 HG01069.hp1 HG01099.hp2 HG01167.hp1 HG01255.hp1 HG01256.hp1 HG01261.hp1 HG01346.hp1 HG01433.hp2 HG01516.hp2 HG01884.hp2 HG01975.hp1 HG02004.hp1 HG02040.hp2 HG02071.hp1 HG02109.hp1 HG02135.hp1 HG02257.hp2 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02647.hp1 HG02698.hp2 HG02735.hp2 HG02976.hp1 HG03195.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp2 HG03654.hp1 HG03688.hp2 HG03710.hp2 HG03831.hp2 HG04184.hp2 HG04204.hp2 HG06807.hp1 NA18747.hp1 NA18747.hp2 NA18939.hp1 NA18951.hp1 NA18955.hp1 NA18957.hp2 NA18964.hp2 NA18968.hp1 NA18969.hp1 NA18969.hp2 NA18986.hp1 NA18989.hp2 NA18990.hp2 NA19007.hp1 NA19057.hp2 NA19078.hp1 NA19081.hp2 NA20805.hp2 NA20905.hp1 NA20905.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0008c0010 a0001c0001 a0008c0010	a0001c0001t0001 a0001c0001t0006 a0001c0001t0023 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0023 a0001c0001t0031 a0001c0001t0036 a0008c0010t0001	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 others(59): Show a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0087 a0001c0001t0001g0097 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0257 a0001c0001t0001g0258 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0001g0299 a0001c0001t0001g0301 a0001c0001t0001g0310 a0001c0001t0001g0312 a0001c0001t0001g0316 a0001c0001t0006g0007 a0001c0001t0006g0096 a0001c0001t0006g0098 a0001c0001t0023g0099 a0001c0001t0031g0290 a0001c0001t0036g0300 a0008c0010t0001g0298	69	354	0.1949	-26	c.61+ others(41): Show c.61+4147_61+4172delAAAATATATATATATATATATATATA	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP1_chr13_113292239_113328672	113301642	AAAATATA others(19): Show AAAATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00735.hp2 HG00741.hp1 others(34): Show HG00408.hp1 HG00735.hp2 HG00741.hp1 HG01074.hp2 HG01109.hp2 HG01123.hp2 HG01891.hp1 HG02040.hp1 HG02135.hp2 HG02145.hp2 HG02257.hp1 HG02258.hp2 HG02615.hp1 HG02698.hp1 HG02735.hp1 HG03516.hp1 HG04115.hp2 HG04204.hp1 NA18522.hp2 NA18940.hp2 NA18942.hp2 NA18946.hp1 NA18946.hp2 NA18951.hp2 NA18957.hp1 NA18960.hp1 NA18980.hp2 NA18985.hp1 NA18993.hp1 NA19003.hp2 NA19009.hp2 NA19064.hp2 NA19067.hp1 NA19067.hp2 NA19087.hp1 NA19087.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0009 a0001c0001t0015 others(1): Show a0001c0001t0001 a0001c0001t0009 a0001c0001t0015 a0001c0005t0001	a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 others(34): Show a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0261 a0001c0001t0001g0262 a0001c0001t0001g0265 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0009g0263 a0001c0001t0009g0264 a0001c0001t0015g0086 a0001c0005t0001g0123	37	354	0.1045	-26	c.61+ others(41): Show c.61+4149_61+4174delAATATATATATATATATATATATATA	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP1_chr13_113292239_113328672	113322760	CTCTCTGA others(19): Show CTCTCTGAGGGGGTGGGGGTGCCGCTT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01884.hp1 HG03195.hp2 HG01884.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0025 a0001c0001t0013 a0001c0001t0025	a0001c0001t0013g0058 a0001c0001t0025g0313 a0001c0001t0013g0058 a0001c0001t0025g0313	2	354	0.0057	-26	c.36 others(35): Show c.365_*390delTTCTCTGAGGGGGTGGGGGTGCCGCT	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	9/9	365	INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP1_chr13_113292239_113328672	113322786	TTCTCTGA others(19): Show TTCTCTGAGGGGGTGGGGGTGCCGCTC	T T	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0171 a0001c0001t0033g0171	1	354	0.0028	-26	c.38 others(35): Show c.387_*412delCGCTCTCTCTGAGGGGGTGGGGGTGC	LAMP1	ENSG00000185896.11	transcript	ENST00000332556.5	protein_coding	9/9	387	INFO_REALIGN_3_PRIME	chr13	TogoVar
LAMP3_chr3_183117215_183167734	183149562	AAAAAAAA others(19): Show AAAAAAAAAAAAAATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG03834.hp1 NA19003.hp1 others(2): Show HG00642.hp2 HG03834.hp1 NA19003.hp1 NA19058.hp2 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0001 a0002c0002t0004	a0001c0001t0001g0220 a0001c0001t0001g0221 a0002c0002t0001g0182 others(2): Show a0001c0001t0001g0220 a0001c0001t0001g0221 a0002c0002t0001g0182 a0002c0002t0001g0197 a0002c0002t0004g0329	5	372	0.0134	-26	c.888 others(43): Show c.888+2787_888+2812delATATATATATATATTTTTTTTTTTTT	LAMP3	ENSG00000078081.8	transcript	ENST00000265598.8	protein_coding	3/5			chr3	TogoVar
LANCL3_chrX_37566661_37689463	37622522	TTATACTA others(19): Show TTATACTAATCATCTGTTATCATCTGG	T T	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0053 a0001c0002t0053	a0001c0002t0053g0181 a0001c0002t0053g0181	1	201	0.0050	-26	c.574 others(45): Show c.574-33163_574-33138delTACTAATCATCTGTTATCATCTGGTA	LANCL3	ENSG00000147036.12	transcript	ENST00000378619.4	protein_coding	1/4		INFO_REALIGN_3_PRIME	chrX	TogoVar
LAPTM4B_chr8_97770788_97858013	97776283	CTGGGGGA others(19): Show CTGGGGGAGGCCAGGAGTTTGGGGCGA	C C	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02717.hp1 HG02809.hp1 others(1): Show HG02615.hp2 HG02717.hp1 HG02809.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0029 a0001c0001t0003 a0001c0001t0029	a0001c0001t0003g0371 a0001c0001t0003g0372 a0001c0001t0003g0373 others(1): Show a0001c0001t0003g0371 a0001c0001t0003g0372 a0001c0001t0003g0373 a0001c0001t0029g0374	4	380	0.0105	-26	c.99+ others(39): Show c.99+190_99+215delAGTTTGGGGCGATGGGGGAGGCCAGG	LAPTM4B	ENSG00000104341.17	transcript	ENST00000521545.7	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr8	TogoVar
LARGE1_chr22_33267509_33925476	33766913	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG03453.hp2 HG02559.hp1 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0006 a0001c0001t0001 a0001c0002t0006	a0001c0001t0001g0053 a0001c0002t0006g0080 a0001c0001t0001g0053 a0001c0002t0006g0080	2	110	0.0182	-26	c.-82 others(43): Show c.-82-5381_-82-5356delATATATATATATATATATATATATAT	LARGE1	ENSG00000133424.22	transcript	ENST00000397394.8	protein_coding	1/14			chr22	TogoVar
LARGE1_chr22_33267509_33925476	33828395	TGAAGTGC others(19): Show TGAAGTGCCACTGCAGAGTTCAGAAAA	T T	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01255.hp1 HG01071.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0026 a0001c0016t0020 a0001c0001t0026 a0001c0016t0020	a0001c0001t0026g0091 a0001c0016t0020g0002 a0001c0001t0026g0091 a0001c0016t0020g0002	2	110	0.0182	-26	c.-82 others(45): Show c.-82-66863_-82-66838delTTTTCTGAACTCTGCAGTGGCACTTC	LARGE1	ENSG00000133424.22	transcript	ENST00000397394.8	protein_coding	1/14			chr22	TogoVar
LAT2_chr7_74205006_74234834	74214091	AATATATA others(19): Show AATATATATAAATATATATATGAAAAT	A A	intron_variant intron_variant	MODIFIER	HG01943.hp1 NA18977.hp1 NA19079.hp2 HG01943.hp1 NA18977.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0053 a0001c0001t0001g0003 a0001c0001t0001g0053	3	344	0.0087	-26	c.-21 others(43): Show c.-218-697_-218-672delTAAATATATATATGAAAATATATATA	LAT2	ENSG00000086730.17	transcript	ENST00000460943.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LAT2_chr7_74205006_74234834	74214255	TATATATA others(19): Show TATATATATATGAAAATATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02015.hp2 HG02572.hp2 others(3): Show HG01884.hp1 HG02015.hp2 HG02572.hp2 NA18962.hp2 NA18979.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0027 a0001c0001t0001g0068 others(3): Show a0001c0001t0001g0012 a0001c0001t0001g0027 a0001c0001t0001g0068 a0001c0001t0001g0077 a0001c0001t0001g0102 a0001c0001t0001g0103	6	344	0.0174	-26	c.-21 others(43): Show c.-218-504_-218-479delGAAAATATATATATAAATATATATAT	LAT2	ENSG00000086730.17	transcript	ENST00000460943.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LAT2_chr7_74205006_74234834	74214419	TATATATA others(19): Show TATATATATATGAAAATATATATATAA	T T	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00323.hp1 HG02056.hp1 others(9): Show HG00280.hp1 HG00323.hp1 HG02056.hp1 HG02145.hp1 HG02257.hp2 HG02647.hp1 HG02895.hp1 HG02965.hp2 HG03195.hp2 HG03942.hp2 NA18999.hp2 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0036 others(9): Show a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0003g0058	12	344	0.0349	-26	c.-21 others(43): Show c.-218-366_-218-341delGAAAATATATATATAAATATATATAT	LAT2	ENSG00000086730.17	transcript	ENST00000460943.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LATS2_chr13_20968036_21066586	20969695	AAAATATA others(19): Show AAAATATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0166 a0001c0001t0002g0166	1	316	0.0032	-26	c.51 others(37): Show c.5149_*5174delATATATATATATATATATATATATTT	LATS2	ENSG00000150457.9	transcript	ENST00000382592.5	protein_coding		3340		chr13	TogoVar
LATS2_chr13_20968036_21066586	20969697	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp1 NA20300.hp1 NA19005.hp1 NA20300.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0010 a0002c0002t0024 a0002c0002t0010 a0002c0002t0024	a0002c0002t0010g0281 a0002c0002t0024g0152 a0002c0002t0010g0281 a0002c0002t0024g0152	2	316	0.0063	-26	c.51 others(37): Show c.5147_*5172delATATATATATATATATATATATATAT	LATS2	ENSG00000150457.9	transcript	ENST00000382592.5	protein_coding		3338		chr13	TogoVar
LATS2_chr13_20968036_21066586	21044689	GGTGTGTG others(19): Show GGTGTGTGTGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01358.hp1 HG01496.hp2 others(15): Show HG00642.hp2 HG01358.hp1 HG01496.hp2 HG01943.hp2 HG02145.hp2 HG02148.hp1 HG03490.hp2 HG03492.hp1 HG03704.hp2 NA18956.hp1 NA18988.hp1 NA19011.hp1 NA19057.hp2 NA19064.hp1 NA19076.hp2 NA19079.hp2 NA19088.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0007	a0001c0001 a0002c0006 a0003c0003 others(2): Show a0001c0001 a0002c0006 a0003c0003 a0007c0013 a0007c0021	a0001c0001t0001 a0002c0006t0004 a0003c0003t0002 others(2): Show a0001c0001t0001 a0002c0006t0004 a0003c0003t0002 a0007c0013t0002 a0007c0021t0002	a0001c0001t0001g0024 a0002c0006t0004g0011 a0002c0006t0004g0012 others(15): Show a0001c0001t0001g0024 a0002c0006t0004g0011 a0002c0006t0004g0012 a0002c0006t0004g0015 a0002c0006t0004g0019 a0002c0006t0004g0020 a0002c0006t0004g0021 a0002c0006t0004g0022 a0003c0003t0002g0008 a0003c0003t0002g0010 a0003c0003t0002g0014 a0003c0003t0002g0016 a0003c0003t0002g0017 a0003c0003t0002g0018 a0007c0013t0002g0009 a0007c0013t0002g0023 a0007c0013t0002g0093 a0007c0021t0002g0013	18	316	0.0570	-26	c.342 others(41): Show c.342+970_342+995delACACACACACACACACACACACACAC	LATS2	ENSG00000150457.9	transcript	ENST00000382592.5	protein_coding	2/7			chr13	TogoVar
LAYN_chr11_111535720_111566745	111564617	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp2 HG01884.hp2 HG01891.hp2 others(7): Show HG00733.hp2 HG01884.hp2 HG01891.hp2 HG02280.hp1 HG02486.hp2 HG02970.hp2 HG02976.hp1 HG06807.hp2 NA19240.hp1 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0003 a0001c0001t0001 a0003c0004t0003	a0001c0001t0001g0018 a0003c0004t0003g0007 a0003c0004t0003g0128 others(2): Show a0001c0001t0001g0018 a0003c0004t0003g0007 a0003c0004t0003g0128 a0003c0004t0003g0129 a0003c0004t0003g0130	10	298	0.0336	-26	c.41 others(37): Show c.4160_*4185delACACACACACACACACACACACACAC	LAYN	ENSG00000204381.12	transcript	ENST00000375614.7	protein_coding		2873		chr11	TogoVar
LCE4A_chr1_152703160_152714434	152710010	CTCTCTGT others(19): Show CTCTCTGTGTGTGTGTGTGTGTGTGTG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG02145.hp2 HG02486.hp1 others(2): Show HG01884.hp2 HG02145.hp2 HG02486.hp1 HG02922.hp2 HG02976.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0001 a0003c0004t0001g0001	5	416	0.0120	-26	c.63 others(35): Show c.636_*661delTCTCTGTGTGTGTGTGTGTGTGTGTG	LCE4A	ENSG00000187170.6	transcript	ENST00000368777.2	protein_coding		577		chr1	TogoVar
LCE4A_chr1_152703160_152714434	152710012	CTCTGTGT others(19): Show CTCTGTGTGTGTGTGTGTGTGTGTGTG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp1 HG00558.hp2 HG00609.hp1 others(34): Show HG00423.hp1 HG00558.hp2 HG00609.hp1 HG00673.hp2 HG01928.hp2 HG02055.hp1 HG02083.hp1 HG02109.hp1 HG02135.hp2 HG02148.hp2 HG02970.hp2 HG03195.hp1 HG03491.hp2 HG03492.hp1 HG03516.hp2 HG03669.hp1 HG03927.hp1 NA18522.hp1 NA18612.hp2 NA18941.hp2 NA18951.hp2 NA18957.hp2 NA18963.hp2 NA18984.hp2 NA18986.hp1 NA18999.hp1 NA19054.hp1 NA19060.hp2 NA19063.hp1 NA19067.hp2 NA19070.hp1 NA19072.hp2 NA19075.hp2 NA19079.hp2 NA19087.hp1 NA19240.hp2 NA21309.hp2	a0003 a0003	a0003c0003 a0003c0004 a0003c0003 a0003c0004	a0003c0003t0002 a0003c0004t0001 a0003c0003t0002 a0003c0004t0001	a0003c0003t0002g0001 a0003c0004t0001g0001 a0003c0004t0001g0002 others(1): Show a0003c0003t0002g0001 a0003c0004t0001g0001 a0003c0004t0001g0002 a0003c0004t0001g0003	37	416	0.0889	-26	c.63 others(35): Show c.638_*663delTCTGTGTGTGTGTGTGTGTGTGTGTG	LCE4A	ENSG00000187170.6	transcript	ENST00000368777.2	protein_coding		579		chr1	TogoVar
LCK_chr1_32246265_32291165	32266745	TCTTCCCC others(19): Show TCTTCCCCCTCCTCCCCTCCCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0078	1	274	0.0037	-26	c.-5- others(41): Show c.-5-7563_-5-7538delTCCCCCTCCCCTTCCCCCTCCTCCCC	LCK	ENSG00000182866.18	transcript	ENST00000336890.10	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr1	TogoVar
LCK_chr1_32246265_32291165	32272605	AAGAGAGA others(19): Show AAGAGAGAGAGAGAGAGAAAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0048 a0001c0001t0002g0048	1	274	0.0037	-26	c.-5- others(41): Show c.-5-1702_-5-1677delAAGAGAGAGAGAGAGAGAGAGAGAGA	LCK	ENSG00000182866.18	transcript	ENST00000336890.10	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr1	TogoVar
LCLAT1_chr2_30442246_30649225	30447646	GGCCGCGC others(19): Show GGCCGCGCGAGCGGCGAGGGCGAGGTA	G G	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02280.hp1 HG02258.hp2 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0048 a0001c0001t0049 a0001c0001t0048 a0001c0001t0049	a0001c0001t0048g0363 a0001c0001t0049g0364 a0001c0001t0048g0363 a0001c0001t0049g0364	2	366	0.0055	-26	c.-5+ others(39): Show c.-5+270_-5+295delCGAGCGGCGAGGGCGAGGTAGCCGCG	LCLAT1	ENSG00000172954.14	transcript	ENST00000379509.8	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
LCLAT1_chr2_30442246_30649225	30607845	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00642.hp1 HG00738.hp2 others(22): Show HG00140.hp2 HG00642.hp1 HG00738.hp2 HG00741.hp1 HG01071.hp1 HG01081.hp1 HG01106.hp2 HG01261.hp1 HG01496.hp1 HG02055.hp2 HG02257.hp1 HG02258.hp2 HG02451.hp2 HG02647.hp1 HG02717.hp2 HG02735.hp2 HG02970.hp2 HG02976.hp1 HG03225.hp2 HG03486.hp2 HG03688.hp1 HG03704.hp2 NA18942.hp1 NA18964.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0049 a0001c0001t0073 others(3): Show a0001c0001t0004 a0001c0001t0049 a0001c0001t0073 a0001c0001t0074 a0001c0001t0075 a0001c0001t0077	a0001c0001t0004g0262 a0001c0001t0004g0263 a0001c0001t0004g0264 others(22): Show a0001c0001t0004g0262 a0001c0001t0004g0263 a0001c0001t0004g0264 a0001c0001t0004g0265 a0001c0001t0004g0266 a0001c0001t0004g0267 a0001c0001t0004g0268 a0001c0001t0004g0269 a0001c0001t0004g0270 a0001c0001t0004g0271 a0001c0001t0004g0272 a0001c0001t0004g0273 a0001c0001t0004g0276 a0001c0001t0004g0277 a0001c0001t0004g0278 a0001c0001t0004g0279 a0001c0001t0004g0280 a0001c0001t0004g0289 a0001c0001t0004g0290 a0001c0001t0004g0351 a0001c0001t0049g0364 a0001c0001t0073g0274 a0001c0001t0074g0275 a0001c0001t0075g0286 a0001c0001t0077g0109	25	366	0.0683	-26	c.629 others(45): Show c.629-32242_629-32217delGTGTGTGTGTGTGTGTGTGTGTGTGT	LCLAT1	ENSG00000172954.14	transcript	ENST00000379509.8	protein_coding	5/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
LCN10_chr9_136733170_136747940	136737590	ATAATATA others(19): Show ATAATATATACTATATATATATAATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00733.hp2 HG01081.hp2 others(15): Show HG00140.hp2 HG00733.hp2 HG01081.hp2 HG01109.hp1 HG01255.hp1 HG01257.hp1 HG01258.hp1 HG01361.hp2 HG01433.hp2 HG01928.hp2 HG01943.hp2 HG01952.hp2 HG02273.hp1 HG02293.hp2 HG03491.hp1 HG03492.hp1 NA20752.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0020 a0001c0001t0001g0001 a0001c0001t0001g0020	18	392	0.0459	-26	c.19 others(37): Show c.1909_*1934delATATTATATATATATAGTATATATTA	LCN10	ENSG00000187922.14	transcript	ENST00000497771.6	protein_coding		579		chr9	TogoVar
LCN12_chr9_136947273_136960497	136956969	AGATGGTG others(19): Show AGATGGTGGATGGTTGGATATTGGGTG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp1 HG03225.hp1 HG03453.hp1 HG02717.hp1 HG03225.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0016 a0001c0001t0001g0011 a0001c0001t0001g0016	3	382	0.0079	-26	c.15 others(37): Show c.1571_*1596delGATGGTGGATGGTTGGATATTGGGTG	LCN12	ENSG00000184925.12	transcript	ENST00000371633.8	protein_coding		1473		chr9	TogoVar
LCN15_chr9_136754634_136769518	136769203	CCCCCCCA others(19): Show CCCCCCCATGCACTGCCCCCCCCGCCA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp2 NA18998.hp1 NA18906.hp2 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0003 a0001c0001t0002g0006 a0001c0001t0001g0003 a0001c0001t0002g0006	2	356	0.0056	-26	c.-47 others(37): Show c.-4741_-4716delTGGCGGGGGGGGCAGTGCATGGGGGG	LCN15	ENSG00000177984.7	transcript	ENST00000316144.6	protein_coding		4686		chr9	TogoVar
LCN15_chr9_136754634_136769518	136769218	CCCCCCCC others(19): Show CCCCCCCCGCCACCCCCCCATGCACTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG03453.hp2 HG03669.hp2 others(3): Show HG01891.hp2 HG03453.hp2 HG03669.hp2 NA18747.hp2 NA19011.hp2 NA19030.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0006 a0001c0001 a0002c0002 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0004c0006t0001	a0001c0001t0001g0003 a0001c0001t0002g0006 a0002c0002t0001g0009 others(1): Show a0001c0001t0001g0003 a0001c0001t0002g0006 a0002c0002t0001g0009 a0004c0006t0001g0021	6	356	0.0169	-26	c.-47 others(37): Show c.-4756_-4731delCAGTGCATGGGGGGGTGGCGGGGGGG	LCN15	ENSG00000177984.7	transcript	ENST00000316144.6	protein_coding		4701		chr9	TogoVar
LCN15_chr9_136754634_136769518	136769298	ACCCCTCC others(19): Show ACCCCTCCATGCACTGCCCCCCGCCAC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	356	0.0028	-26	c.-48 others(37): Show c.-4836_-4811delGTGGCGGGGGGCAGTGCATGGAGGGG	LCN15	ENSG00000177984.7	transcript	ENST00000316144.6	protein_coding		4781		chr9	TogoVar
LCORL_chr4_17836187_18026755	17998981	AAAAAATA others(19): Show AAAAAATATATATATATATATATACAC	A A	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG03209.hp1 NA19240.hp1 HG02145.hp2 HG03209.hp1 NA19240.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0011 a0005c0006t0011	a0005c0006t0011g0208 a0005c0006t0011g0229 a0005c0006t0011g0230 a0005c0006t0011g0208 a0005c0006t0011g0229 a0005c0006t0011g0230	3	292	0.0103	-26	c.154 others(45): Show c.154+22591_154+22616delGTGTATATATATATATATATATTTTT	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LCORL_chr4_17836187_18026755	17998983	AAAATATA others(19): Show AAAATATATATATATATATATACACAC	A A	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0005 a0005c0006t0005	a0005c0006t0005g0231 a0005c0006t0005g0231	1	292	0.0034	-26	c.154 others(45): Show c.154+22589_154+22614delGTGTGTATATATATATATATATATTT	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LCORL_chr4_17836187_18026755	17998985	AATATATA others(19): Show AATATATATATATATATATACACACAT	A A	intron_variant intron_variant	MODIFIER	HG02055.hp2 NA19043.hp1 HG02055.hp2 NA19043.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0008 a0004c0005t0008	a0004c0005t0008g0281 a0004c0005t0008g0282 a0004c0005t0008g0281 a0004c0005t0008g0282	2	292	0.0069	-26	c.154 others(45): Show c.154+22587_154+22612delATGTGTGTATATATATATATATATAT	LCORL	ENSG00000178177.17	transcript	ENST00000635767.2	protein_coding	1/7			chr4	TogoVar
LCOR_chr10_96827298_97000956	96873571	CGTGTGTG others(19): Show CGTGTGTGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0254 a0001c0001t0012g0254	1	288	0.0035	-26	c.-32 others(47): Show c.-329-33673_-329-33648delGTGTGTGTGTGTGTGTGTGTGTGT GT	LCOR	ENSG00000196233.14	transcript	ENST00000421806.4	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr10	TogoVar
LCP2_chr5_170241233_170302777	170289590	CTTTTCTT others(19): Show CTTTTCTTTCTTTCTTTCTTTCTTTCT	C C	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01361.hp2 HG02735.hp1 others(1): Show HG01074.hp1 HG01361.hp2 HG02735.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0002 a0001c0001t0001 a0001c0004t0002	a0001c0001t0001g0149 a0001c0004t0002g0141 a0001c0004t0002g0142 others(1): Show a0001c0001t0001g0149 a0001c0004t0002g0141 a0001c0004t0002g0142 a0001c0004t0002g0150	4	384	0.0104	-26	c.142 others(43): Show c.142-1600_142-1575delAGAAAGAAAGAAAGAAAGAAAGAAAA	LCP2	ENSG00000043462.13	transcript	ENST00000046794.10	protein_coding	2/20			chr5	TogoVar
LCP2_chr5_170241233_170302777	170290966	AAGAAAGA others(19): Show AAGAAAGAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG01891.hp1 HG02027.hp1 others(24): Show HG00280.hp2 HG01891.hp1 HG02027.hp1 HG02135.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02630.hp1 HG02738.hp2 HG03098.hp2 HG03209.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp2 HG03688.hp1 HG03688.hp2 HG03831.hp2 HG04184.hp1 HG06807.hp2 NA18522.hp1 NA18947.hp1 NA18954.hp2 NA19030.hp1 NA19058.hp2 NA19240.hp1 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0003c0012	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(10): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0006 a0001c0002t0008 a0001c0003t0002 a0001c0003t0008 a0001c0003t0013 a0001c0004t0001 a0001c0004t0002 a0001c0005t0002 a0001c0006t0001 a0003c0012t0001	a0001c0001t0001g0281 a0001c0001t0001g0300 a0001c0001t0001g0325 others(24): Show a0001c0001t0001g0281 a0001c0001t0001g0300 a0001c0001t0001g0325 a0001c0002t0001g0245 a0001c0002t0001g0290 a0001c0002t0001g0291 a0001c0002t0001g0292 a0001c0002t0001g0334 a0001c0002t0003g0006 a0001c0002t0006g0286 a0001c0002t0008g0287 a0001c0003t0002g0246 a0001c0003t0002g0247 a0001c0003t0002g0280 a0001c0003t0002g0336 a0001c0003t0008g0243 a0001c0003t0008g0332 a0001c0003t0013g0289 a0001c0004t0001g0244 a0001c0004t0001g0333 a0001c0004t0002g0298 a0001c0005t0002g0294 a0001c0005t0002g0296 a0001c0006t0001g0295 a0001c0006t0001g0297 a0001c0006t0001g0299 a0003c0012t0001g0288	27	384	0.0703	-26	c.141 others(43): Show c.141+2318_141+2343delCTTTCTTTCTTTCTTTCTTTCTTTCT	LCP2	ENSG00000043462.13	transcript	ENST00000046794.10	protein_coding	2/20			chr5	TogoVar
LCTL_chr15_66542532_66570998	66568865	CACACACA others(19): Show CACACACACACATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0141 a0001c0001t0002g0141	1	434	0.0023	-26	c.-30 others(37): Show c.-3057_-3032delATATATATATATATATGTGTGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2868		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568867	CACACACA others(19): Show CACACACACATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0203 a0001c0001t0001g0203	1	434	0.0023	-26	c.-30 others(37): Show c.-3059_-3034delATATATATATATATATATGTGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2870		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568869	CACACACA others(19): Show CACACACATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02155.hp1 NA18959.hp1 NA19010.hp1 others(1): Show HG02155.hp1 NA18959.hp1 NA19010.hp1 NA19067.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0093 a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0093	4	434	0.0092	-26	c.-30 others(37): Show c.-3061_-3036delATATATATATATATATATATGTGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2872		chr15	TogoVar
LCTL_chr15_66542532_66570998	66568871	CACACATA others(19): Show CACACATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp1 HG00733.hp1 HG00735.hp1 others(22): Show HG00408.hp1 HG00733.hp1 HG00735.hp1 HG01081.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp2 HG01257.hp1 HG01346.hp1 HG01496.hp2 HG01516.hp2 HG01517.hp1 HG01943.hp1 HG02040.hp1 HG02074.hp2 HG02293.hp1 HG02738.hp1 HG03239.hp2 HG03490.hp1 HG03492.hp2 HG03688.hp2 HG03704.hp2 HG04115.hp2 NA19062.hp2 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 others(15): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0128 a0001c0001t0001g0140 a0001c0001t0001g0185 a0001c0001t0001g0189	25	434	0.0576	-26	c.-30 others(37): Show c.-3063_-3038delATATATATATATATATATATATGTGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2874		chr15	TogoVar

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