Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LCTL_chr15_66542532_66570998	66568873	CACATATA others(19): Show CACATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01167.hp2 HG02273.hp1 others(1): Show HG00735.hp2 HG01167.hp2 HG02273.hp1 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0007 a0001c0001t0001g0015 a0001c0001t0001g0020	4	434	0.0092	-26	c.-30 others(37): Show c.-3065_-3040delATATATATATATATATATATATATGT	LCTL	ENSG00000188501.12	transcript	ENST00000695545.1	protein_coding		2876		chr15	TogoVar
LCT_chr2_135782850_135842184	135835482	GTATATAT others(19): Show GTATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01884.hp2 HG02055.hp2 others(16): Show HG01175.hp2 HG01884.hp2 HG02055.hp2 HG02109.hp1 HG02280.hp1 HG02486.hp2 HG02615.hp1 HG02630.hp2 HG02647.hp2 HG02965.hp1 HG02976.hp2 HG03098.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp2 HG03540.hp1 HG03579.hp1 NA18906.hp1 NA19240.hp1	a0003 a0004 a0005 others(1): Show a0003 a0004 a0005 a0018	a0003c0003 a0004c0006 a0004c0021 others(2): Show a0003c0003 a0004c0006 a0004c0021 a0005c0020 a0018c0027	a0003c0003t0001 a0004c0006t0001 a0004c0006t0006 others(3): Show a0003c0003t0001 a0004c0006t0001 a0004c0006t0006 a0004c0021t0006 a0005c0020t0001 a0018c0027t0001	a0003c0003t0001g0221 a0003c0003t0001g0222 a0003c0003t0001g0229 others(14): Show a0003c0003t0001g0221 a0003c0003t0001g0222 a0003c0003t0001g0229 a0003c0003t0001g0231 a0003c0003t0001g0232 a0004c0006t0001g0012 a0004c0006t0001g0013 a0004c0006t0001g0224 a0004c0006t0001g0225 a0004c0006t0001g0228 a0004c0006t0001g0230 a0004c0006t0006g0223 a0004c0006t0006g0227 a0004c0021t0006g0226 a0005c0020t0001g0025 a0005c0020t0001g0027 a0018c0027t0001g0024	19	366	0.0519	-26	c.640 others(43): Show c.640+1022_640+1047delTATATATATATATATATATATATATA	LCT	ENSG00000115850.10	transcript	ENST00000264162.7	protein_coding	1/16			chr2	TogoVar
LDB2_chr4_16496541_16903645	16505334	TGTGTGTG others(19): Show TGTGTGTGTGTGTGAGAGAGAGAGAGC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	162	0.0062	-26	c.892 others(43): Show c.892-2487_892-2462delGCTCTCTCTCTCTCACACACACACAC	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	7/7			chr4	TogoVar
LDB2_chr4_16496541_16903645	16755504	TGTGTGTG others(19): Show TGTGTGTGTGTGTGTGTGTGTATGTGA	T T	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0154	1	162	0.0062	-26	c.235 others(43): Show c.235+3628_235+3653delTCACATACACACACACACACACACAC	LDB2	ENSG00000169744.13	transcript	ENST00000304523.10	protein_coding	2/7			chr4	TogoVar
LDHAL6A_chr11_18450856_18484601	18453602	GTGTATAT others(19): Show GTGTATATATATATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0355 a0001c0001t0004g0355	1	420	0.0024	-26	c.-30 others(37): Show c.-3078_-3053delTGTATATATATATATATATATATATA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding		2253		chr11	TogoVar
LDHAL6A_chr11_18450856_18484601	18467944	CATATATA others(19): Show CATATATATATACGTATATATATACGT	C C	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02258.hp2 HG03017.hp2 others(11): Show HG02027.hp2 HG02258.hp2 HG03017.hp2 HG03453.hp2 NA18951.hp1 NA18955.hp2 NA18968.hp2 NA18992.hp1 NA19055.hp2 NA19066.hp2 NA19079.hp2 NA19084.hp1 NA19085.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0022 a0001c0001t0047 a0001c0002t0006	a0001c0001t0001g0167 a0001c0001t0004g0031 a0001c0001t0004g0325 others(10): Show a0001c0001t0001g0167 a0001c0001t0004g0031 a0001c0001t0004g0325 a0001c0001t0004g0326 a0001c0001t0004g0327 a0001c0001t0004g0342 a0001c0001t0004g0344 a0001c0001t0004g0346 a0001c0001t0004g0347 a0001c0001t0005g0026 a0001c0001t0022g0274 a0001c0001t0047g0179 a0001c0002t0006g0293	14	420	0.0333	-26	c.418 others(43): Show c.418+2144_418+2169delTACGTATATATATACGTATATATATA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHAL6A_chr11_18450856_18484601	18468038	CATATATA others(19): Show CATATATATACGTATATATATATACAT	C C	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG00621.hp2 HG00733.hp1 others(17): Show HG00323.hp1 HG00621.hp2 HG00733.hp1 HG01167.hp2 HG01256.hp2 HG01358.hp2 HG01981.hp1 HG02622.hp2 HG03209.hp2 HG03579.hp1 HG03834.hp2 HG04184.hp1 NA18965.hp1 NA18995.hp2 NA19001.hp1 NA19065.hp2 NA19075.hp1 NA19077.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(6): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0024 a0001c0001t0026 a0001c0001t0065 a0001c0001t0066 a0001c0002t0006 a0001c0002t0018	a0001c0001t0001g0245 a0001c0001t0004g0324 a0001c0001t0004g0334 others(17): Show a0001c0001t0001g0245 a0001c0001t0004g0324 a0001c0001t0004g0334 a0001c0001t0004g0338 a0001c0001t0004g0339 a0001c0001t0004g0341 a0001c0001t0004g0352 a0001c0001t0006g0291 a0001c0001t0024g0241 a0001c0001t0024g0243 a0001c0001t0026g0244 a0001c0001t0065g0337 a0001c0001t0066g0323 a0001c0002t0006g0272 a0001c0002t0006g0295 a0001c0002t0006g0304 a0001c0002t0006g0307 a0001c0002t0006g0309 a0001c0002t0018g0103 a0001c0002t0018g0104	20	420	0.0476	-26	c.418 others(43): Show c.418+2238_418+2263delCGTATATATATATACATATATATATA	LDHAL6A	ENSG00000166800.11	transcript	ENST00000280706.3	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHA_chr11_18389563_18413425	18400429	CCACACAC others(19): Show CCACACACACACACACACACACACACA	C C	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00621.hp2 HG00741.hp1 others(38): Show HG00438.hp1 HG00621.hp2 HG00741.hp1 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01167.hp2 HG01169.hp1 HG01257.hp2 HG01515.hp1 HG01884.hp1 HG02083.hp2 HG02135.hp2 HG02257.hp1 HG02486.hp1 HG02895.hp1 HG02897.hp2 HG03017.hp1 HG03710.hp2 HG03831.hp2 NA18612.hp1 NA18906.hp1 NA18945.hp1 NA18955.hp2 NA18956.hp2 NA18965.hp2 NA18968.hp1 NA18988.hp2 NA18992.hp2 NA18995.hp2 NA19009.hp1 NA19043.hp1 NA19054.hp1 NA19055.hp2 NA19065.hp2 NA19066.hp1 NA19075.hp1 NA19084.hp2 NA19088.hp2 NA19090.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0003 a0001c0002t0008 a0001c0001t0004 a0001c0002t0003 a0001c0002t0008	a0001c0001t0004g0220 a0001c0001t0004g0221 a0001c0002t0003g0006 others(16): Show a0001c0001t0004g0220 a0001c0001t0004g0221 a0001c0002t0003g0006 a0001c0002t0003g0008 a0001c0002t0003g0015 a0001c0002t0003g0016 a0001c0002t0003g0018 a0001c0002t0003g0030 a0001c0002t0003g0031 a0001c0002t0003g0060 a0001c0002t0003g0062 a0001c0002t0003g0063 a0001c0002t0003g0064 a0001c0002t0003g0065 a0001c0002t0003g0070 a0001c0002t0003g0110 a0001c0002t0003g0111 a0001c0002t0008g0066 a0001c0002t0008g0067	41	390	0.1051	-26	c.245 others(41): Show c.245-380_245-355delACACACACACACACACACACACACAC	LDHA	ENSG00000134333.15	transcript	ENST00000422447.8	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHC_chr11_18407318_18457063	18444604	GTATATAT others(19): Show GTATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	348	0.0029	-26	c.711 others(43): Show c.711-1586_711-1561delATATATATATATATATATATATATAT	LDHC	ENSG00000166796.12	transcript	ENST00000541669.6	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDHC_chr11_18407318_18457063	18453602	GTGTATAT others(19): Show GTGTATATATATATATATATATATATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0324 a0001c0001t0003g0324	1	348	0.0029	-26	c.24 others(37): Show c.2476_*2501delTGTATATATATATATATATATATATA	LDHC	ENSG00000166796.12	transcript	ENST00000541669.6	protein_coding		1540		chr11	TogoVar
LDLRAD2_chr1_21807265_21830225	21816114	GAGGGAAG others(19): Show GAGGGAAGCCTGGCCCTAACTCCCCTT	G G	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0117 a0001c0001t0034g0117	1	454	0.0022	-26	c.643 others(39): Show c.643+41_643+66delAGGGAAGCCTGGCCCTAACTCCCCTT	LDLRAD2	ENSG00000187942.12	transcript	ENST00000344642.7	protein_coding	3/4			chr1	TogoVar
LDLRAD3_chr11_35939062_36237136	35948997	AGCATCAT others(19): Show AGCATCATTACTGTGCATCATTACTGT	A A	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02074.hp1 NA19068.hp1 HG00609.hp1 HG02074.hp1 NA19068.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0160 a0001c0002t0001g0158 a0001c0002t0001g0159 a0001c0002t0001g0160	3	236	0.0127	-26	c.46+ others(41): Show c.46+4885_46+4910delATTACTGTGCATCATTACTGTGCATC	LDLRAD3	ENSG00000179241.13	transcript	ENST00000315571.6	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LDLRAD4_chr18_13213760_13657751	13624154	CCCCACCA others(19): Show CCCCACCAGGTGCTGAGCACTGCCGGA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp1 HG00408.hp1 others(85): Show HG00099.hp2 HG00140.hp1 HG00408.hp1 HG00408.hp2 HG00597.hp2 HG00609.hp2 HG01071.hp2 HG01074.hp2 HG01192.hp1 HG01255.hp2 HG01261.hp1 HG01884.hp1 HG01891.hp2 HG01952.hp1 HG01952.hp2 HG01978.hp1 HG01981.hp1 HG02027.hp2 HG02074.hp1 HG02080.hp1 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02486.hp1 HG02486.hp2 HG02559.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02976.hp1 HG02976.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG06807.hp2 NA18906.hp2 NA18939.hp2 NA18942.hp1 NA18945.hp1 NA18948.hp1 NA18948.hp2 NA18954.hp1 NA18954.hp2 NA18959.hp1 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18971.hp2 NA18980.hp2 NA18990.hp2 NA19004.hp1 NA19004.hp2 NA19010.hp2 NA19057.hp2 NA19060.hp2 NA20129.hp2 NA20300.hp1 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0003 a0001c0001 a0001c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(42): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0019 a0001c0001t0022 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0033 a0001c0001t0034 a0001c0001t0036 a0001c0001t0037 a0001c0001t0039 a0001c0001t0041 a0001c0001t0045 a0001c0001t0046 a0001c0001t0047 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0052 a0001c0001t0053 a0001c0001t0054 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0064 a0001c0001t0065 a0001c0001t0069 a0001c0002t0001 a0001c0002t0005 a0001c0002t0014 a0001c0002t0068 a0003c0003t0005	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0037 others(85): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0001g0044 a0001c0001t0001g0065 a0001c0001t0001g0068 a0001c0001t0001g0097 a0001c0001t0001g0110 a0001c0001t0001g0116 a0001c0001t0001g0119 a0001c0001t0001g0125 a0001c0001t0001g0134 a0001c0001t0001g0140 a0001c0001t0001g0146 a0001c0001t0001g0152 a0001c0001t0001g0160 a0001c0001t0002g0008 a0001c0001t0002g0046 a0001c0001t0002g0058 a0001c0001t0002g0087 a0001c0001t0002g0090 a0001c0001t0002g0101 a0001c0001t0003g0006 a0001c0001t0003g0064 a0001c0001t0003g0130 a0001c0001t0003g0137 a0001c0001t0003g0145 a0001c0001t0003g0147 a0001c0001t0003g0154 a0001c0001t0004g0057 a0001c0001t0005g0135 a0001c0001t0006g0103 a0001c0001t0006g0132 a0001c0001t0006g0176 a0001c0001t0007g0020 a0001c0001t0007g0073 a0001c0001t0007g0142 a0001c0001t0008g0053 a0001c0001t0008g0108 a0001c0001t0008g0174 a0001c0001t0010g0055 a0001c0001t0010g0099 a0001c0001t0012g0028 a0001c0001t0012g0040 a0001c0001t0012g0079 a0001c0001t0013g0005 a0001c0001t0013g0143 a0001c0001t0013g0169 a0001c0001t0015g0071 a0001c0001t0015g0086 a0001c0001t0016g0070 a0001c0001t0018g0075 a0001c0001t0018g0081 a0001c0001t0019g0048 a0001c0001t0019g0072 a0001c0001t0022g0004 a0001c0001t0029g0027 a0001c0001t0030g0085 a0001c0001t0031g0039 a0001c0001t0033g0082 a0001c0001t0034g0102 a0001c0001t0036g0129 a0001c0001t0037g0098 a0001c0001t0039g0049 a0001c0001t0041g0029 a0001c0001t0045g0011 a0001c0001t0046g0078 a0001c0001t0047g0114 a0001c0001t0048g0041 a0001c0001t0049g0067 a0001c0001t0050g0168 a0001c0001t0052g0060 a0001c0001t0053g0083 a0001c0001t0054g0076 a0001c0001t0056g0059 a0001c0001t0057g0038 a0001c0001t0058g0063 a0001c0001t0064g0003 a0001c0001t0065g0113 a0001c0001t0069g0172 a0001c0002t0001g0136 a0001c0002t0005g0054 a0001c0002t0005g0074 a0001c0002t0014g0052 a0001c0002t0014g0123 a0001c0002t0068g0171 a0003c0003t0005g0080	88	178	0.4944	-26	c.336 others(43): Show c.336+2914_336+2939delCCAGGTGCTGAGCACTGCCGGACCCA	LDLRAD4	ENSG00000168675.19	transcript	ENST00000359446.11	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr18	TogoVar
LEMD3_chr12_65164583_65253355	65194817	CTTTAGAT others(19): Show CTTTAGATTATAATTTATAAATTATAA	C C	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	398	0.0025	-26	c.152 others(47): Show c.1523-16062_1523-16037delTTATAATTTAGATTATAATTTATA AA	LEMD3	ENSG00000174106.3	transcript	ENST00000308330.3	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr12	TogoVar
LEPR_chr1_65415668_65646559	65518897	CTTTCTTT others(19): Show CTTTCTTTCTTTCTTTCTTTCTCTCTT	C C	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0002 a0005c0007t0002	a0005c0007t0002g0186 a0005c0007t0002g0186	1	216	0.0046	-26	c.-20 others(45): Show c.-20-46647_-20-46622delTTCTTTCTTTCTTTCTTTCTCTCTTT	LEPR	ENSG00000116678.20	transcript	ENST00000349533.11	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr1	TogoVar
LGALS16_chr19_39650913_39665647	39663782	CTCTCTCT others(19): Show CTCTCTCTATATATATATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	442	0.0023	-26	c.32 others(37): Show c.3263_*3288delTCTCTCTATATATATATATATATATA	LGALS16	ENSG00000249861.4	transcript	ENST00000392051.4	protein_coding		3136		chr19	TogoVar
LGI1_chr10_93752936_93803159	93801014	CAACTAAT others(19): Show CAACTAATTTTTTAAATTTTTGTAGAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0162 a0001c0001t0001g0162	1	376	0.0027	-26	c.32 others(37): Show c.3212_*3237delAACTAATTTTTTAAATTTTTGTAGAG	LGI1	ENSG00000108231.14	transcript	ENST00000371418.9	protein_coding		2856		chr10	TogoVar
LGMN_chr14_92698809_92753627	92719249	CCACCACC others(19): Show CCACCACCACCGCCACCGCCGCCGCCG	C C	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0005 a0005	a0005c0013 a0005c0013	a0005c0013t0001 a0005c0013t0001	a0005c0013t0001g0386 a0005c0013t0001g0386	1	420	0.0024	-26	c.139 others(41): Show c.139-431_139-406delCGGCGGCGGCGGTGGCGGTGGTGGTG	LGMN	ENSG00000100600.15	transcript	ENST00000334869.9	protein_coding	2/13			chr14	TogoVar
LHFPL6_chr13_39337892_39608193	39562589	TACATATA others(19): Show TACATATATACACATATACATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00323.hp1 others(53): Show HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00609.hp1 HG00621.hp2 HG00639.hp2 HG00642.hp2 HG00735.hp1 HG00738.hp1 HG01070.hp1 HG01081.hp2 HG01123.hp1 HG01167.hp1 HG01261.hp1 HG01433.hp2 HG01934.hp2 HG01975.hp2 HG02015.hp1 HG02145.hp1 HG02683.hp1 HG02683.hp2 HG02723.hp1 HG02738.hp2 HG02818.hp1 HG02895.hp2 HG03098.hp1 HG03209.hp2 HG03490.hp1 HG03540.hp1 HG03579.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04199.hp1 NA18942.hp2 NA18949.hp2 NA18951.hp1 NA18953.hp1 NA18953.hp2 NA18956.hp1 NA18964.hp2 NA18973.hp2 NA18975.hp1 NA18981.hp2 NA18983.hp2 NA18989.hp2 NA18991.hp1 NA18993.hp1 NA18994.hp2 NA19010.hp1 NA19011.hp2 NA19056.hp1 NA19070.hp2 NA19084.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(16): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020 a0001c0001t0024 a0001c0001t0027 a0001c0001t0028 a0001c0002t0007	a0001c0001t0001g0107 a0001c0001t0001g0138 a0001c0001t0001g0142 others(53): Show a0001c0001t0001g0107 a0001c0001t0001g0138 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0146 a0001c0001t0001g0152 a0001c0001t0001g0170 a0001c0001t0001g0172 a0001c0001t0001g0182 a0001c0001t0002g0040 a0001c0001t0002g0103 a0001c0001t0002g0135 a0001c0001t0002g0162 a0001c0001t0002g0166 a0001c0001t0003g0041 a0001c0001t0003g0104 a0001c0001t0003g0134 a0001c0001t0003g0157 a0001c0001t0003g0163 a0001c0001t0003g0181 a0001c0001t0004g0045 a0001c0001t0004g0092 a0001c0001t0004g0160 a0001c0001t0004g0165 a0001c0001t0004g0174 a0001c0001t0004g0183 a0001c0001t0004g0224 a0001c0001t0004g0225 a0001c0001t0005g0169 a0001c0001t0005g0171 a0001c0001t0006g0123 a0001c0001t0006g0125 a0001c0001t0006g0147 a0001c0001t0006g0168 a0001c0001t0006g0230 a0001c0001t0007g0154 a0001c0001t0007g0180 a0001c0001t0008g0122 a0001c0001t0008g0164 a0001c0001t0008g0204 a0001c0001t0009g0055 a0001c0001t0009g0151 a0001c0001t0009g0156 a0001c0001t0009g0159 a0001c0001t0009g0184 a0001c0001t0011g0124 a0001c0001t0012g0158 a0001c0001t0012g0161 a0001c0001t0013g0167 a0001c0001t0015g0173 a0001c0001t0016g0145 a0001c0001t0020g0003 a0001c0001t0024g0150 a0001c0001t0027g0175 a0001c0001t0028g0153 a0001c0002t0007g0005	56	242	0.2314	-26	c.385 others(45): Show c.385+38217_385+38242delGTATATATGTATATGTGTATATATGT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHFPL6_chr13_39337892_39608193	39563091	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01071.hp1 HG01123.hp2 others(11): Show HG00597.hp2 HG01071.hp1 HG01123.hp2 HG01167.hp2 HG01261.hp2 HG01433.hp1 HG02738.hp1 HG03486.hp2 HG04199.hp2 NA18984.hp2 NA19011.hp1 NA19083.hp2 NA19088.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0013 a0001c0001t0026	a0001c0001t0001g0054 a0001c0001t0001g0066 a0001c0001t0002g0074 others(11): Show a0001c0001t0001g0054 a0001c0001t0001g0066 a0001c0001t0002g0074 a0001c0001t0002g0207 a0001c0001t0003g0004 a0001c0001t0003g0095 a0001c0001t0003g0097 a0001c0001t0003g0232 a0001c0001t0004g0100 a0001c0001t0004g0101 a0001c0001t0007g0186 a0001c0001t0007g0233 a0001c0001t0013g0094 a0001c0001t0026g0177	14	242	0.0579	-26	c.385 others(45): Show c.385+37715_385+37740delGTGTGTGTGTGTGTGTGTGTGTGTGT	LHFPL6	ENSG00000183722.9	transcript	ENST00000379589.4	protein_coding	2/3			chr13	TogoVar
LHPP_chr10_124456823_124619141	124457310	TCTCTCTC others(19): Show TCTCTCTCTCCCTCCCTCCCTCCCTTC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01261.hp2 HG02015.hp1 HG02015.hp2 others(7): Show HG01261.hp2 HG02015.hp1 HG02015.hp2 HG02135.hp1 HG02523.hp1 NA18942.hp1 NA18954.hp1 NA18966.hp1 NA19012.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0038 others(7): Show a0001c0001t0001g0017 a0001c0001t0001g0028 a0001c0001t0001g0038 a0001c0001t0001g0044 a0001c0001t0001g0048 a0001c0001t0001g0051 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0004g0020	10	260	0.0385	-26	c.-45 others(37): Show c.-4552_-4527delCTCTCTCTCCCTCCCTCCCTCCCTTC	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding		4512		chr10	TogoVar
LHPP_chr10_124456823_124619141	124507254	TCGGGGGG others(19): Show TCGGGGGGGTAGACAGGATTTCAGGTG	T T	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	260	0.0039	-26	c.624 others(43): Show c.624+9127_624+9152delCGGGGGGGTAGACAGGATTTCAGGTG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507380	GGGGATAG others(19): Show GGGGATAGGGAGTATTTCAGGTGGGGA	G G	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03041.hp2 HG01891.hp1 HG03041.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0002 a0001c0001t0001 a0003c0003t0002	a0001c0001t0001g0099 a0003c0003t0002g0259 a0001c0001t0001g0099 a0003c0003t0002g0259	2	260	0.0077	-26	c.624 others(43): Show c.624+9256_624+9281delATAGGGAGTATTTCAGGTGGGGAGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507503	GGGGATAG others(19): Show GGGGATAGGGAGTATTTCAGGTGGGGA	G G	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0174	1	260	0.0039	-26	c.624 others(43): Show c.624+9379_624+9404delATAGGGAGTATTTCAGGTGGGGAGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507528	GAGGGTAG others(19): Show GAGGGTAGGGAGGATTTCAGGTGTGGA	G G	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	260	0.0039	-26	c.624 others(43): Show c.624+9401_624+9426delAGGGTAGGGAGGATTTCAGGTGTGGA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507602	GAGGGTAG others(19): Show GAGGGTAGACAGGATTTCAGGTGTGGA	G G	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0134 a0001c0001t0001g0134	1	260	0.0039	-26	c.624 others(43): Show c.624+9475_624+9500delAGGGTAGACAGGATTTCAGGTGTGGA	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6			chr10	TogoVar
LHPP_chr10_124456823_124619141	124507651	GGGGATAG others(19): Show GGGGATAGGGAGTATTTCAGGTGGGGA	G G	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	260	0.0039	-26	c.625 others(43): Show c.625-9525_625-9500delATAGGGAGTATTTCAGGTGGGGAGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507697	TGTGGAGG others(19): Show TGTGGAGGGTAGACAGGATTTCAGGTG	T T	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01169.hp1 HG01168.hp2 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0230 a0001c0001t0001g0227 a0001c0001t0001g0230	2	260	0.0077	-26	c.625 others(43): Show c.625-9481_625-9456delTGGAGGGTAGACAGGATTTCAGGTGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHPP_chr10_124456823_124619141	124507799	GGGGGTAG others(19): Show GGGGGTAGGGAGGATTTCAGGTGTGGA	G G	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0120 a0002c0002t0001g0120	1	260	0.0039	-26	c.625 others(43): Show c.625-9377_625-9352delGTAGGGAGGATTTCAGGTGTGGAGGG	LHPP	ENSG00000107902.14	transcript	ENST00000368842.10	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LHX4_chr1_180225264_180283984	180234169	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA19012.hp2 NA18950.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0082 a0001c0001t0002g0204 a0001c0001t0001g0082 a0001c0001t0002g0204	2	402	0.0050	-26	c.76+ others(41): Show c.76+3591_76+3616delTATATATATATATATATATATATATA	LHX4	ENSG00000121454.6	transcript	ENST00000263726.4	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr1	TogoVar
LIFR_chr5_38469668_38561646	38553622	CTATATAT others(19): Show CTATATATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0267 a0001c0001t0001g0267	1	374	0.0027	-26	c.-20 others(43): Show c.-20+2686_-20+2711delTATATATATATATATATATATATATA	LIFR	ENSG00000113594.10	transcript	ENST00000453190.7	protein_coding	1/19			chr5	TogoVar
LILRA5_chr19_54302070_54318166	54308354	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 NA18986.hp2 HG01884.hp2 NA18986.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0105 a0001c0001t0006g0117 a0001c0001t0001g0105 a0001c0001t0006g0117	2	409	0.0049	-26	c.713 others(41): Show c.713-632_713-607delATATATATATATATATATATATATAT	LILRA5	ENSG00000187116.14	transcript	ENST00000432233.8	protein_coding	5/6			chr19	TogoVar
LIMD1_chr3_45589751_45691341	45594778	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp1 others(6): Show HG00099.hp2 HG00140.hp2 HG00323.hp1 HG01069.hp1 HG01952.hp2 HG02486.hp1 HG03490.hp1 NA18747.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0047 a0001c0001t0194 others(3): Show a0001c0001t0016 a0001c0001t0047 a0001c0001t0194 a0001c0001t0195 a0001c0001t0196 a0001c0001t0197	a0001c0001t0016g0001 a0001c0001t0016g0108 a0001c0001t0047g0182 others(5): Show a0001c0001t0016g0001 a0001c0001t0016g0108 a0001c0001t0047g0182 a0001c0001t0047g0226 a0001c0001t0194g0246 a0001c0001t0195g0136 a0001c0001t0196g0165 a0001c0001t0197g0114	9	358	0.0251	-26	c.-61 others(33): Show c.-61_-36delACACACACACACACACACACACACAC	LIMD1	ENSG00000144791.10	transcript	ENST00000273317.5	protein_coding	1/8	36	INFO_REALIGN_3_PRIME	chr3	TogoVar
LIMS1_chr2_108529470_108692246	108587290	TTGTGTGT others(19): Show TTGTGTGTGTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp2 HG02055.hp1 others(8): Show HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02257.hp1 HG02280.hp1 HG02451.hp1 HG02723.hp2 HG02895.hp2 HG02922.hp1 HG03098.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0015 a0001c0001t0003 a0001c0001t0015	a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 others(8): Show a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 a0001c0001t0003g0205 a0001c0001t0003g0206 a0001c0001t0003g0207 a0001c0001t0003g0208 a0001c0001t0003g0209 a0001c0001t0003g0211 a0001c0001t0003g0212 a0001c0001t0015g0210	11	246	0.0447	-26	c.32+ others(43): Show c.32+52722_32+52747delGTGTGTGTGTGTGTGTGTGTGTGTGT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIMS1_chr2_108529470_108692246	108642339	TTTGTTTT others(19): Show TTTGTTTTTTTTTTTTTTTGTTTTTTG	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp2 HG02055.hp1 others(7): Show HG01884.hp1 HG01891.hp2 HG02055.hp1 HG02257.hp1 HG02280.hp1 HG02451.hp1 HG02723.hp2 HG02895.hp2 HG02922.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0015 a0001c0001t0003 a0001c0001t0015	a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 others(7): Show a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0204 a0001c0001t0003g0205 a0001c0001t0003g0206 a0001c0001t0003g0207 a0001c0001t0003g0209 a0001c0001t0003g0211 a0001c0001t0003g0212 a0001c0001t0015g0210	10	246	0.0407	-26	c.33- others(43): Show c.33-17263_33-17238delGTTTTTTTTTTTTTTTGTTTTTTGTT	LIMS1	ENSG00000169756.17	transcript	ENST00000544547.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
LIN28A_chr1_26405817_26434728	26410377	GGTGTGTG others(19): Show GGTGTGTGTGTGTGTGTGTGTGTGTGT	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0075 a0001c0001t0003g0075	1	376	0.0027	-26	c.-51 others(35): Show c.-514_-489delGTGTGTGTGTGTGTGTGTGTGTGTGT	LIN28A	ENSG00000131914.11	transcript	ENST00000326279.11	protein_coding		439		chr1	TogoVar
LIN28B_chr6_104952107_105088332	105084991	CACACACA others(19): Show CACACACACACACACACACACACACAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0078 a0001c0001t0003g0078	1	278	0.0036	-26	c.62 others(37): Show c.6209_*6234delACACACACACACACACACACACACAG	LIN28B	ENSG00000187772.8	transcript	ENST00000345080.5	protein_coding		1660		chr6	TogoVar
LINGO2_chr9_27932617_29218601	27981534	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAGAAAAAAAAG	C C	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG02630.hp1 HG02630.hp2 others(1): Show HG00408.hp1 HG02630.hp1 HG02630.hp2 NA19074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0021 a0001c0001t0034 a0001c0001t0003 a0001c0001t0021 a0001c0001t0034	a0001c0001t0003g0032 a0001c0001t0003g0034 a0001c0001t0021g0051 others(1): Show a0001c0001t0003g0032 a0001c0001t0003g0034 a0001c0001t0021g0051 a0001c0001t0034g0061	4	62	0.0645	-26	c.-35 others(45): Show c.-35-30854_-35-30829delCTTTTTTTTCTTTTTTTTTTTTTTTT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28057559	ATATATAC others(19): Show ATATATACATATATATACACATATATG	A A	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00438.hp1 HG00438.hp2 others(28): Show HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00741.hp1 HG01074.hp1 HG01261.hp1 HG01261.hp2 HG02027.hp1 HG02056.hp2 HG02572.hp2 HG02630.hp2 HG02922.hp2 HG02976.hp2 HG03130.hp1 HG03139.hp2 HG03486.hp1 HG06807.hp1 HG06807.hp2 NA18990.hp1 NA18990.hp2 NA18995.hp1 NA19043.hp1 NA19060.hp1 NA19074.hp1 NA19074.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0014 a0001c0001t0016 a0001c0001t0020 a0001c0001t0021 a0001c0001t0025 a0001c0001t0028 a0001c0001t0029 a0001c0001t0032 a0001c0001t0033 a0002c0002t0001	a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0035 others(28): Show a0001c0001t0001g0016 a0001c0001t0001g0019 a0001c0001t0001g0035 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0002g0014 a0001c0001t0002g0028 a0001c0001t0002g0044 a0001c0001t0002g0045 a0001c0001t0002g0052 a0001c0001t0003g0025 a0001c0001t0003g0034 a0001c0001t0004g0033 a0001c0001t0007g0006 a0001c0001t0007g0009 a0001c0001t0008g0040 a0001c0001t0009g0056 a0001c0001t0012g0005 a0001c0001t0014g0008 a0001c0001t0016g0011 a0001c0001t0020g0042 a0001c0001t0021g0051 a0001c0001t0025g0055 a0001c0001t0028g0038 a0001c0001t0029g0024 a0001c0001t0032g0023 a0001c0001t0033g0058 a0002c0002t0001g0050	31	62	0.5000	-26	c.-35 others(47): Show c.-35-106879_-35-106854delCATATATGTGTATATATATGTATA TA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	6/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28506409	TATATATA others(19): Show TATATATATATATACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0014 a0001c0001t0002g0014	1	62	0.0161	-26	c.-31 others(47): Show c.-313-30410_-313-30385delGTGTGTGTGTGTGTATATATATAT AT	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	3/6			chr9	TogoVar
LINGO2_chr9_27932617_29218601	28769506	ATATATAT others(19): Show ATATATATATATATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA18995.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0007 a0001c0001t0017g0007	1	62	0.0161	-26	c.-39 others(47): Show c.-394-99252_-394-99227delAAAAAAAAAAAAAATATATATATA TA	LINGO2	ENSG00000174482.11	transcript	ENST00000698399.1	protein_coding	2/6			chr9	TogoVar
LIPG_chr18_49557057_49604185	49579768	CTTTTCTT others(19): Show CTTTTCTTTTCTTTTCTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0355 a0002c0002t0009g0355	1	384	0.0026	-26	c.794 others(43): Show c.794-1643_794-1618delTCTTTTCTTTTCTTTTCTTTTCTTTT	LIPG	ENSG00000101670.12	transcript	ENST00000261292.9	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr18	TogoVar
LIPH_chr3_185501262_185557588	185529952	AAGAAAGA others(19): Show AAGAAAGAAAGAAGGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02145.hp1 HG02809.hp1 others(1): Show HG01891.hp2 HG02145.hp1 HG02809.hp1 NA18980.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0005 a0001c0002t0004 a0001c0001t0003 a0001c0001t0005 a0001c0002t0004	a0001c0001t0003g0110 a0001c0001t0003g0282 a0001c0001t0005g0109 others(1): Show a0001c0001t0003g0110 a0001c0001t0003g0282 a0001c0001t0005g0109 a0001c0002t0004g0331	4	358	0.0112	-26	c.527 others(43): Show c.527-2393_527-2368delCTTTCTTTCTTTCCTTCTTTCTTTCT	LIPH	ENSG00000163898.10	transcript	ENST00000296252.9	protein_coding	3/9			chr3	TogoVar
LIPI_chr21_14103813_14215955	14106194	AAAAAAAA others(19): Show AAAAAAAAAAAATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02293.hp2 HG02293.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0002 a0005c0004t0002	a0005c0004t0002g0321 a0005c0004t0002g0321	1	362	0.0028	-26	c.27 others(37): Show c.2773_*2798delATATATATATATATATTTTTTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2618		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106196	AAAAAAAA others(19): Show AAAAAAAAAATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01516.hp2 HG01517.hp2 HG03654.hp2 others(7): Show HG01516.hp2 HG01517.hp2 HG03654.hp2 HG03688.hp1 NA18946.hp1 NA18953.hp1 NA18984.hp2 NA19056.hp1 NA19066.hp1 NA20905.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0004 a0001c0001 a0005c0004	a0001c0001t0001 a0005c0004t0002 a0001c0001t0001 a0005c0004t0002	a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0143 others(7): Show a0001c0001t0001g0139 a0001c0001t0001g0141 a0001c0001t0001g0143 a0001c0001t0001g0157 a0001c0001t0001g0168 a0001c0001t0001g0202 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0214 a0005c0004t0002g0063	10	362	0.0276	-26	c.27 others(37): Show c.2771_*2796delATATATATATATATATATTTTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2616		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106198	AAAAAAAA others(19): Show AAAAAAAATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG01070.hp1 HG01071.hp2 others(16): Show HG00609.hp1 HG01070.hp1 HG01071.hp2 HG01192.hp1 HG01255.hp1 HG01346.hp1 HG01346.hp2 HG02165.hp2 NA18612.hp2 NA18939.hp1 NA18945.hp2 NA18947.hp1 NA18960.hp1 NA18963.hp1 NA18979.hp1 NA19056.hp2 NA19076.hp2 NA19079.hp1 NA19087.hp1	a0001 a0005 a0016 a0001 a0005 a0016	a0001c0001 a0001c0008 a0005c0004 others(1): Show a0001c0001 a0001c0008 a0005c0004 a0016c0019	a0001c0001t0001 a0001c0008t0005 a0005c0004t0002 others(1): Show a0001c0001t0001 a0001c0008t0005 a0005c0004t0002 a0016c0019t0001	a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0056 others(16): Show a0001c0001t0001g0006 a0001c0001t0001g0016 a0001c0001t0001g0056 a0001c0001t0001g0140 a0001c0001t0001g0156 a0001c0001t0001g0159 a0001c0001t0001g0167 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0180 a0001c0001t0001g0186 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0238 a0001c0008t0005g0341 a0005c0004t0002g0133 a0005c0004t0002g0224 a0016c0019t0001g0158	19	362	0.0525	-26	c.27 others(37): Show c.2769_*2794delATATATATATATATATATATTTTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2614		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106200	AAAAAATA others(19): Show AAAAAATATATATATATATATATATAT	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03710.hp1 HG03831.hp2 HG03710.hp1 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0215 a0001c0001t0001g0207 a0001c0001t0001g0215	2	362	0.0055	-26	c.27 others(37): Show c.2767_*2792delATATATATATATATATATATATTTTT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2612		chr21	TogoVar
LIPI_chr21_14103813_14215955	14106226	TATATATA others(19): Show TATATATATATATATATATATATAAAA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0005 a0005	a0005c0004 a0005c0004	a0005c0004t0002 a0005c0004t0002	a0005c0004t0002g0222 a0005c0004t0002g0222	1	362	0.0028	-26	c.27 others(37): Show c.2741_*2766delTTTTATATATATATATATATATATAT	LIPI	ENSG00000188992.12	transcript	ENST00000681601.1	protein_coding		2586		chr21	TogoVar
LIPN_chr10_88755020_88784626	88767644	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02897.hp1 NA18950.hp2 NA19087.hp1 others(2): Show HG02897.hp1 NA18950.hp2 NA19087.hp1 NA20905.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0007 a0001c0009 others(1): Show a0001c0002 a0001c0007 a0001c0009 a0002c0001	a0001c0002t0007 a0001c0007t0004 a0001c0009t0004 others(2): Show a0001c0002t0007 a0001c0007t0004 a0001c0009t0004 a0002c0001t0001 a0002c0001t0002	a0001c0002t0007g0189 a0001c0007t0004g0235 a0001c0009t0004g0191 others(2): Show a0001c0002t0007g0189 a0001c0007t0004g0235 a0001c0009t0004g0191 a0002c0001t0001g0107 a0002c0001t0002g0188	5	394	0.0127	-26	c.536 others(43): Show c.536-1125_536-1100delAAAAAAAAAAAAAAAAAAAAAAAAAA	LIPN	ENSG00000204020.6	transcript	ENST00000404459.2	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr10	TogoVar
LIPT1_chr2_99149967_99168137	99161273	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02083.hp1 NA19005.hp1 HG00544.hp1 HG02083.hp1 NA19005.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	3	406	0.0074	-26	c.-1- others(39): Show c.-1-682_-1-657delAAAAAAAAAAAAAAAAAATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar

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