Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LIPT1_chr2_99149967_99168137	99161275	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0151 a0001c0001t0001g0151	1	406	0.0025	-26	c.-1- others(39): Show c.-1-680_-1-655delAAAAAAAAAAAAAAAATATATATATA	LIPT1	ENSG00000144182.17	transcript	ENST00000651691.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr2	TogoVar
LITAF_chr16_11542722_11591919	11574027	GTTTTTAA others(19): Show GTTTTTAAAGACAGGTTCTCACTGGGT	G G	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0358 a0001c0001t0002g0358	1	412	0.0024	-26	c.-6+ others(43): Show c.-6+12833_-6+12858delACCCAGTGAGAACCTGTCTTTAAAAA	LITAF	ENSG00000189067.14	transcript	ENST00000622633.5	protein_coding	1/3			chr16	TogoVar
LMBR1L_chr12_49092139_49115847	49111931	TTGTGTGT others(19): Show TTGTGTGTGTGTGTGTGTGTGTGTGTG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG02922.hp1 HG03486.hp2 HG02809.hp1 HG02922.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0115 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0115	3	380	0.0079	-26	c.-14 others(37): Show c.-1402_-1377delCACACACACACACACACACACACACA	LMBR1L	ENSG00000139636.16	transcript	ENST00000267102.13	protein_coding		1085		chr12	TogoVar
LMBR1_chr7_156672791_156898183	156817500	GAGAGAGA others(19): Show GAGAGAGAGAGAGAGACAGAGACAGAC	G G	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0123 a0001c0001t0035g0125 a0001c0001t0035g0123 a0001c0001t0035g0125	2	314	0.0064	-26	c.319 others(43): Show c.319+9079_319+9104delGTCTGTCTCTGTCTCTCTCTCTCTCT	LMBR1	ENSG00000105983.23	transcript	ENST00000353442.10	protein_coding	4/16			chr7	TogoVar
LMNB1_chr5_126772136_126842020	126791766	CTTTTTTA others(19): Show CTTTTTTATTCCCTTGATGTCTCTTTT	C C	intron_variant intron_variant	MODIFIER	NA19075.hp2 NA19075.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0177 a0001c0001t0001g0177	1	374	0.0027	-26	c.360 others(45): Show c.360-13006_360-12981delTTTATTCCCTTGATGTCTCTTTTTTT	LMNB1	ENSG00000113368.12	transcript	ENST00000261366.10	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr5	TogoVar
LMNTD1_chr12_25471082_25558283	25527663	TATATATA others(19): Show TATATATATATATATATATACACACAC	T T	intron_variant intron_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	388	0.0026	-26	c.492 others(41): Show c.492-734_492-709delGTGTGTGTATATATATATATATATAT	LMNTD1	ENSG00000152936.11	transcript	ENST00000458174.7	protein_coding	4/9			chr12	TogoVar
LMNTD1_chr12_25471082_25558283	25527665	TATATATA others(19): Show TATATATATATATATATACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0288 a0001c0001t0001g0288	1	388	0.0026	-26	c.492 others(41): Show c.492-736_492-711delGTGTGTGTGTATATATATATATATAT	LMNTD1	ENSG00000152936.11	transcript	ENST00000458174.7	protein_coding	4/9			chr12	TogoVar
LMO3_chr12_16543372_16611162	16565983	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02451.hp2 HG01109.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	2	354	0.0057	-26	c.207 others(43): Show c.207-5471_207-5446delATATATATATATATATATATATATAT	LMO3	ENSG00000048540.16	transcript	ENST00000537304.6	protein_coding	2/3			chr12	TogoVar
LMO7_chr13_75631330_75864866	75655637	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02280.hp1 HG02056.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0058 a0001c0001t0002g0083 a0001c0001t0002g0058 a0001c0001t0002g0083	2	272	0.0074	-26	c.69+ others(43): Show c.69+18939_69+18964delATATATATATATATATATATATATAT	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr13	TogoVar
LMOD1_chr1_201891456_201951548	201901527	TATGTATA others(19): Show TATGTATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0291 a0001c0001t0001g0291	1	400	0.0025	-26	c.262 others(41): Show c.262-802_262-777delGTATATATATATATATATATATACAT	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding	1/2			chr1	TogoVar
LMOD1_chr1_201891456_201951548	201901664	ATATATAT others(19): Show ATATATATATACACATATATATATGTG	A A	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0381 a0001c0001t0003g0381	1	400	0.0025	-26	c.262 others(41): Show c.262-939_262-914delCACATATATATATGTGTATATATATA	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding	1/2			chr1	TogoVar
LMTK2_chr7_98101862_98214638	98140142	CTTTTCTT others(19): Show CTTTTCTTTTCTTTTCTTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03225.hp1 NA18906.hp1 HG02258.hp2 HG03225.hp1 NA18906.hp1	a0001 a0006 a0001 a0006	a0001c0037 a0006c0017 a0001c0037 a0006c0017	a0001c0037t0042 a0006c0017t0027 a0001c0037t0042 a0006c0017t0027	a0001c0037t0042g0011 a0006c0017t0027g0107 a0006c0017t0027g0108 a0001c0037t0042g0011 a0006c0017t0027g0107 a0006c0017t0027g0108	3	390	0.0077	-26	c.232 others(43): Show c.232-1251_232-1226delTCTTTTCTTTTCTTTTCTTTTCTTTT	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LMX1A_chr1_165196867_165361715	165251015	AAGTCATG others(19): Show AAGTCATGACCCAATCACACACTAAGG	A A	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG00408.hp2 others(89): Show HG00280.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00597.hp2 HG00621.hp1 HG00642.hp1 HG00741.hp2 HG01071.hp1 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01256.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01358.hp1 HG01361.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG01978.hp1 HG01978.hp2 HG02004.hp2 HG02055.hp1 HG02056.hp1 HG02056.hp2 HG02145.hp1 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02257.hp2 HG02293.hp1 HG02300.hp1 HG02523.hp2 HG02602.hp2 HG02622.hp1 HG02922.hp2 HG03139.hp2 HG03195.hp2 HG03491.hp1 HG03492.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18939.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp1 NA18944.hp2 NA18946.hp1 NA18948.hp1 NA18951.hp1 NA18955.hp2 NA18959.hp1 NA18962.hp2 NA18970.hp1 NA18970.hp2 NA18982.hp1 NA18985.hp2 NA18987.hp1 NA18988.hp2 NA18990.hp1 NA18992.hp1 NA18992.hp2 NA18998.hp1 NA19005.hp1 NA19011.hp1 NA19011.hp2 NA19056.hp1 NA19056.hp2 NA19060.hp2 NA19077.hp2 NA19088.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20905.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 others(12): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0002t0006 a0001c0002t0007 a0001c0002t0008 a0001c0002t0009 a0001c0002t0010 a0001c0002t0011 a0001c0002t0012 a0001c0002t0013 a0001c0002t0014 a0001c0002t0021 a0001c0002t0032	a0001c0002t0001g0024 a0001c0002t0001g0025 a0001c0002t0001g0030 others(89): Show a0001c0002t0001g0024 a0001c0002t0001g0025 a0001c0002t0001g0030 a0001c0002t0001g0035 a0001c0002t0001g0038 a0001c0002t0001g0045 a0001c0002t0001g0050 a0001c0002t0001g0059 a0001c0002t0001g0060 a0001c0002t0001g0062 a0001c0002t0001g0067 a0001c0002t0001g0069 a0001c0002t0001g0073 a0001c0002t0001g0082 a0001c0002t0001g0086 a0001c0002t0001g0088 a0001c0002t0001g0091 a0001c0002t0001g0097 a0001c0002t0001g0098 a0001c0002t0001g0100 a0001c0002t0001g0105 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0113 a0001c0002t0001g0117 a0001c0002t0001g0121 a0001c0002t0001g0122 a0001c0002t0001g0132 a0001c0002t0001g0134 a0001c0002t0001g0140 a0001c0002t0001g0142 a0001c0002t0001g0146 a0001c0002t0001g0151 a0001c0002t0001g0165 a0001c0002t0001g0178 a0001c0002t0001g0195 a0001c0002t0001g0209 a0001c0002t0001g0210 a0001c0002t0002g0227 a0001c0002t0002g0230 a0001c0002t0002g0235 a0001c0002t0002g0236 a0001c0002t0002g0238 a0001c0002t0002g0241 a0001c0002t0002g0242 a0001c0002t0002g0243 a0001c0002t0002g0244 a0001c0002t0002g0249 a0001c0002t0002g0251 a0001c0002t0002g0252 a0001c0002t0002g0255 a0001c0002t0002g0256 a0001c0002t0002g0258 a0001c0002t0002g0260 a0001c0002t0002g0263 a0001c0002t0002g0264 a0001c0002t0002g0279 a0001c0002t0003g0034 a0001c0002t0003g0079 a0001c0002t0003g0087 a0001c0002t0003g0099 a0001c0002t0003g0101 a0001c0002t0003g0107 a0001c0002t0003g0115 a0001c0002t0003g0136 a0001c0002t0004g0208 a0001c0002t0004g0211 a0001c0002t0006g0141 a0001c0002t0006g0143 a0001c0002t0006g0200 a0001c0002t0007g0037 a0001c0002t0007g0110 a0001c0002t0007g0112 a0001c0002t0007g0181 a0001c0002t0007g0184 a0001c0002t0008g0250 a0001c0002t0008g0257 a0001c0002t0008g0259 a0001c0002t0008g0270 a0001c0002t0008g0271 a0001c0002t0008g0278 a0001c0002t0009g0005 a0001c0002t0009g0012 a0001c0002t0010g0013 a0001c0002t0010g0015 a0001c0002t0011g0021 a0001c0002t0012g0280 a0001c0002t0013g0233 a0001c0002t0013g0239 a0001c0002t0014g0167 a0001c0002t0021g0265 a0001c0002t0032g0182	92	288	0.3194	-26	c.264 others(43): Show c.264-1401_264-1376delCCTTAGTGTGTGATTGGGTCATGACT	LMX1A	ENSG00000162761.14	transcript	ENST00000342310.7	protein_coding	3/8			chr1	TogoVar
LNP1_chr3_100396539_100461319	100431990	GTTTATAT others(19): Show GTTTATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp2 HG00673.hp1 others(16): Show HG00438.hp1 HG00609.hp2 HG00673.hp1 HG01167.hp2 HG01496.hp2 HG01952.hp2 HG01978.hp2 HG02300.hp1 NA18944.hp1 NA18970.hp1 NA18989.hp2 NA18995.hp2 NA19005.hp1 NA19043.hp1 NA19072.hp2 NA19085.hp1 NA19090.hp2 NA19240.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0015 others(13): Show a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0029 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0073 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0282 a0001c0001t0001g0283 a0001c0001t0001g0285 a0001c0001t0001g0288 a0001c0001t0001g0289 a0001c0001t0001g0290 a0001c0001t0002g0363	19	398	0.0477	-26	c.156 others(43): Show c.156+2107_156+2132delTTATATATATATATATATATATATAT	LNP1	ENSG00000206535.8	transcript	ENST00000383693.8	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr3	TogoVar
LNP1_chr3_100396539_100461319	100431992	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0025 a0002c0002t0004g0025	1	398	0.0025	-26	c.156 others(43): Show c.156+2143_156+2168delATATATATATATATATATATATATAT	LNP1	ENSG00000206535.8	transcript	ENST00000383693.8	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr3	TogoVar
LNX2_chr13_27540913_27625529	27583169	AGTGTGTG others(19): Show AGTGTGTGTGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0138 a0002c0002t0006g0138	1	358	0.0028	-26	c.-10 others(45): Show c.-100-1392_-100-1367delACACACACACACACACACACACACAC	LNX2	ENSG00000139517.9	transcript	ENST00000316334.5	protein_coding	1/9			chr13	TogoVar
LOC122539214_chr19_52645447_52695496	52683228	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	NA18987.hp2 NA19084.hp2 NA19086.hp2 NA18987.hp2 NA19084.hp2 NA19086.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0023 a0003c0003t0002 a0002c0002t0023 a0003c0003t0002	a0002c0002t0023g0176 a0003c0003t0002g0140 a0003c0003t0002g0231 a0002c0002t0023g0176 a0003c0003t0002g0140 a0003c0003t0002g0231	3	452	0.0066	-26	c.-20 others(43): Show c.-20+7189_-20+7214delCACACACACACACACACACACACACA	LOC122539214	ENSG00000269825.3	transcript	ENST00000598322.3	protein_coding	1/3			chr19	TogoVar
LOC122539214_chr19_52645447_52695496	52683256	GTGTGTGT others(19): Show GTGTGTGTGTGTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02922.hp1 HG02004.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0073 a0001c0001t0014g0411 a0001c0001t0014g0073 a0001c0001t0014g0411	2	452	0.0044	-26	c.-20 others(43): Show c.-20+7161_-20+7186delTACACACACACACACACACACACACA	LOC122539214	ENSG00000269825.3	transcript	ENST00000598322.3	protein_coding	1/3			chr19	TogoVar
LOC127898562_chr13_77321905_77331988	77326240	GACACACA others(19): Show GACACACACACACACACACACACACAC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG01952.hp1 HG02559.hp1 others(4): Show HG01891.hp1 HG01952.hp1 HG02559.hp1 HG02559.hp2 HG02622.hp2 HG02886.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	7	422	0.0166	-26	c.63 others(35): Show c.639_*664delGTGTGTGTGTGTGTGTGTGTGTGTGT	LOC127898562	ENSG00000288716.1	transcript	ENST00000684204.1	protein_coding		664		chr13	TogoVar
LOC128462377_chr16_89312046_89423292	89349861	AACACACA others(19): Show AACACACACACACACACACACACACAC	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01243.hp1 HG02258.hp1 others(9): Show HG01081.hp2 HG01243.hp1 HG02258.hp1 HG02559.hp2 HG03041.hp1 HG03139.hp2 HG03453.hp2 HG03471.hp1 HG03540.hp1 HG03579.hp2 NA20129.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0008 a0001c0001t0000g0020 a0001c0001t0000g0021 others(9): Show a0001c0001t0000g0008 a0001c0001t0000g0020 a0001c0001t0000g0021 a0001c0001t0000g0022 a0001c0001t0000g0023 a0001c0001t0000g0024 a0001c0001t0000g0025 a0001c0001t0000g0026 a0001c0001t0000g0040 a0001c0001t0000g0302 a0001c0001t0000g0303 a0001c0001t0000g0320	12	366	0.0328	-26	c.10- others(43): Show c.10-32812_10-32787delGTGTGTGTGTGTGTGTGTGTGTGTGT	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89349887	CACACACA others(19): Show CACACACACACACACACACACACACAT	C C	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0185 a0001c0001t0000g0185	1	366	0.0027	-26	c.10- others(43): Show c.10-32838_10-32813delATGTGTGTGTGTGTGTGTGTGTGTGT	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC728743_chr7_150400676_150417470	150404256	TCTGTCAA others(19): Show TCTGTCAAATGTACACCCTCAGGCACG	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	432	0.0023	-26	c.-16 others(37): Show c.-1676_-1651delCTGTCAAATGTACACCCTCAGGCACG	LOC728743	ENSG00000284691.1	transcript	ENST00000642087.2	protein_coding		1419		chr7	TogoVar
LONP2_chr16_48239300_48362349	48298626	GGTGTGTG others(19): Show GGTGTGTGTGTGTGTGTGTGTGTGTGT	G G	intron_variant intron_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0140 a0001c0001t0007g0140	1	154	0.0065	-26	c.153 others(44): Show c.1535-1017_1535-992delGTGTGTGTGTGTGTGTGTGTGTGTGT	LONP2	ENSG00000102910.14	transcript	ENST00000285737.9	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr16	TogoVar
LONRF1_chr8_12716906_12760526	12758791	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG03927.hp2 HG00642.hp1 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0229 a0001c0001t0001g0046 a0001c0001t0001g0229	2	404	0.0050	-26	c.-33 others(37): Show c.-3397_-3372delTATATATATATAGAGAGAGAGAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3266		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758793	CTCTCTCT others(19): Show CTCTCTCTCTCTCTATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG01071.hp2 HG01123.hp1 others(7): Show HG00738.hp2 HG01071.hp2 HG01123.hp1 HG01255.hp2 HG01978.hp1 NA18961.hp1 NA19001.hp1 NA19004.hp2 NA19080.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0046 others(5): Show a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0046 a0001c0001t0001g0158 a0001c0001t0001g0214 a0001c0001t0001g0227 a0001c0001t0001g0254 a0001c0001t0001g0255	10	404	0.0248	-26	c.-33 others(37): Show c.-3399_-3374delTATATATATATATAGAGAGAGAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3268		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758795	CTCTCTCT others(19): Show CTCTCTCTCTCTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00438.hp2 HG01243.hp1 others(17): Show HG00280.hp1 HG00438.hp2 HG01243.hp1 HG01256.hp2 HG01261.hp1 NA18747.hp2 NA18946.hp1 NA18957.hp2 NA18966.hp1 NA18971.hp2 NA18972.hp2 NA18985.hp1 NA18995.hp2 NA18998.hp2 NA19002.hp1 NA19011.hp1 NA19030.hp1 NA19054.hp1 NA19057.hp1 NA19064.hp2	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0002 a0006c0011 a0001c0001 a0002c0002 a0006c0011	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0006c0011t0001	a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0039 others(14): Show a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0094 a0001c0001t0001g0149 a0001c0001t0001g0190 a0001c0001t0001g0196 a0001c0001t0001g0201 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0212 a0001c0001t0001g0223 a0001c0001t0001g0253 a0001c0001t0002g0258 a0002c0002t0001g0005 a0006c0011t0001g0207	20	404	0.0495	-26	c.-34 others(37): Show c.-3401_-3376delTATATATATATATATAGAGAGAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3270		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758797	CTCTCTCT others(19): Show CTCTCTCTCTATATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG00558.hp1 others(28): Show HG00280.hp2 HG00408.hp1 HG00558.hp1 HG01081.hp1 HG01175.hp1 HG02148.hp2 HG02970.hp1 HG03704.hp2 NA18941.hp2 NA18942.hp1 NA18952.hp2 NA18966.hp2 NA18969.hp1 NA18970.hp2 NA18973.hp1 NA18978.hp1 NA18982.hp1 NA18987.hp1 NA18988.hp2 NA18989.hp1 NA18990.hp2 NA19005.hp1 NA19005.hp2 NA19060.hp2 NA19063.hp2 NA19070.hp2 NA19076.hp1 NA19076.hp2 NA19084.hp2 NA19087.hp1 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0001 a0001c0001t0007 a0001c0012t0001 a0001c0001t0001 a0001c0001t0007 a0001c0012t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0009 others(20): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0037 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0071 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0162 a0001c0001t0001g0194 a0001c0001t0001g0199 a0001c0001t0001g0203 a0001c0001t0001g0208 a0001c0001t0001g0219 a0001c0001t0001g0222 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0246 a0001c0001t0007g0043 a0001c0012t0001g0216	31	404	0.0767	-26	c.-34 others(37): Show c.-3403_-3378delTATATATATATATATATAGAGAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3272		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758799	CTCTCTCT others(19): Show CTCTCTCTATATATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp2 HG01123.hp2 HG02135.hp1 others(9): Show HG00733.hp2 HG01123.hp2 HG02135.hp1 NA18954.hp1 NA18957.hp1 NA18962.hp1 NA18970.hp1 NA18975.hp2 NA18994.hp1 NA19007.hp1 NA19082.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0017 others(7): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0017 a0001c0001t0001g0019 a0001c0001t0001g0037 a0001c0001t0001g0193 a0001c0001t0001g0197 a0001c0001t0001g0206 a0001c0001t0001g0252 a0001c0001t0008g0218	12	404	0.0297	-26	c.-34 others(37): Show c.-3405_-3380delTATATATATATATATATATAGAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3274		chr8	TogoVar
LONRF1_chr8_12716906_12760526	12758801	CTCTCTAT others(19): Show CTCTCTATATATATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0200 a0001c0001t0001g0200	1	404	0.0025	-26	c.-34 others(37): Show c.-3407_-3382delTATATATATATATATATATATAGAGA	LONRF1	ENSG00000154359.13	transcript	ENST00000398246.8	protein_coding		3276		chr8	TogoVar
LONRF3_chrX_118969618_119023355	119000775	TTCTCTCT others(19): Show TTCTCTCTCTCTCTCTCTCTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00597.hp1 HG00609.hp1 others(57): Show HG00544.hp1 HG00597.hp1 HG00609.hp1 HG00738.hp1 HG01070.hp1 HG01071.hp1 HG01081.hp1 HG01168.hp2 HG01255.hp1 HG01346.hp2 HG01517.hp1 HG01891.hp1 HG01891.hp2 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp2 HG01993.hp1 HG02015.hp1 HG02129.hp1 HG02132.hp1 HG02148.hp1 HG02148.hp2 HG02165.hp1 HG02559.hp2 HG02886.hp1 HG03139.hp1 HG03195.hp2 HG03491.hp1 HG03492.hp1 HG03704.hp2 HG03834.hp2 HG03927.hp2 HG04184.hp1 NA18747.hp1 NA18940.hp1 NA18946.hp1 NA18954.hp2 NA18963.hp1 NA18964.hp1 NA18964.hp2 NA18977.hp1 NA18988.hp1 NA18990.hp1 NA18992.hp1 NA18992.hp2 NA19003.hp2 NA19004.hp1 NA19006.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19057.hp2 NA19065.hp1 NA19080.hp1 NA19086.hp1 NA19087.hp2 NA20752.hp1 NA20805.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0003c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0002t0001 a0001c0002t0004 a0001c0003t0001 a0001c0004t0001 a0003c0007t0001	a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0027 others(53): Show a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0001g0027 a0001c0001t0001g0100 a0001c0001t0001g0111 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0212 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0222 a0001c0001t0001g0224 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0255 a0001c0001t0001g0257 a0001c0001t0001g0259 a0001c0001t0001g0260 a0001c0001t0001g0264 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0270 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0275 a0001c0001t0002g0106 a0001c0001t0009g0208 a0001c0002t0001g0024 a0001c0002t0001g0164 a0001c0002t0004g0021 a0001c0003t0001g0174 a0001c0003t0001g0220 a0001c0003t0001g0266 a0001c0004t0001g0211 a0003c0007t0001g0225	60	309	0.1942	-26	c.141 others(45): Show c.1416-5307_1416-5282delTCTCTCTCTCTCTCTCTCTCTCTCTC	LONRF3	ENSG00000175556.17	transcript	ENST00000371628.8	protein_coding	5/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
LONRF3_chrX_118969618_119023355	119021449	GTGTATAT others(19): Show GTGTATATATATATATATATATATATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG01517.hp1 HG00323.hp2 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0254 a0001c0003t0001g0266 a0001c0001t0001g0254 a0001c0003t0001g0266	2	309	0.0065	-26	c.37 others(37): Show c.3760_*3785delTGTATATATATATATATATATATATA	LONRF3	ENSG00000175556.17	transcript	ENST00000371628.8	protein_coding		3095		chrX	TogoVar
LOXL2_chr8_23291897_23409120	23294897	CTGTGTGT others(19): Show CTGTGTGTGTGTGTGTGCGTGCGAGCA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0001 a0001	a0001c0024 a0001c0024	a0001c0024t0001 a0001c0024t0001	a0001c0024t0001g0073 a0001c0024t0001g0073	1	348	0.0029	-26	c.31 others(37): Show c.3120_*3145delTGCTCGCACGCACACACACACACACA	LOXL2	ENSG00000134013.16	transcript	ENST00000389131.8	protein_coding		1999		chr8	TogoVar
LPAR1_chr9_110868263_111043470	111009998	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02922.hp1 HG01891.hp2 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0020 a0001c0001t0009g0235 a0001c0001t0001g0020 a0001c0001t0009g0235	2	302	0.0066	-26	c.-18 others(47): Show c.-182+26098_-182+26123delATATATATATATATATATATATAT AT	LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5			chr9	TogoVar
LPAR1_chr9_110868263_111043470	111010021	ATATATAT others(19): Show ATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG02572.hp1 HG02622.hp2 others(5): Show HG01081.hp2 HG02572.hp1 HG02622.hp2 HG02818.hp1 HG03098.hp1 HG03471.hp1 NA18522.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 others(1): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0002t0003	a0001c0001t0004g0019 a0001c0001t0005g0089 a0001c0001t0006g0011 others(5): Show a0001c0001t0004g0019 a0001c0001t0005g0089 a0001c0001t0006g0011 a0001c0001t0006g0013 a0001c0001t0006g0016 a0001c0001t0006g0017 a0001c0001t0006g0129 a0001c0002t0003g0012	8	302	0.0265	-26	c.-18 others(47): Show c.-182+26075_-182+26100delCATATATATATATATATATATATA TA	LPAR1	ENSG00000198121.15	transcript	ENST00000683809.1	protein_coding	2/5			chr9	TogoVar
LPA_chr6_160526482_160669275	160576392	ATATATAT others(19): Show ATATATATATATATATATATATATGGG	A A	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0032 a0032	a0032c0052 a0032c0052	a0032c0052t0001 a0032c0052t0001	a0032c0052t0001g0113 a0032c0052t0001g0113	1	148	0.0068	-26	c.463 others(43): Show c.4631+718_4631+743delCCCATATATATATATATATATATATA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	28/38			chr6	TogoVar
LPA_chr6_160526482_160669275	160654039	ATATAATA others(19): Show ATATAATATATAATATATTATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0023 a0023	a0023c0038 a0023c0038	a0023c0038t0001 a0023c0038t0001	a0023c0038t0001g0047 a0023c0038t0001g0047	1	148	0.0068	-26	c.50- others(41): Show c.50-3568_50-3543delATATATATAATATATTATATATTATA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	1/38			chr6	TogoVar
LPP_chr3_188149157_188895671	188276669	GTCTCTCT others(19): Show GTCTCTCTCTCTCTCTCTCTCTCTCTT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00639.hp1 HG01358.hp1 others(17): Show HG00438.hp1 HG00639.hp1 HG01358.hp1 HG02074.hp2 HG02602.hp2 HG02622.hp1 HG02630.hp1 HG02886.hp2 HG02896.hp1 HG02896.hp2 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG03098.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03453.hp1 HG03540.hp2 HG03704.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0001c0002 a0002c0003 others(6): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0002c0007 a0002c0008 a0002c0014 a0003c0011 a0005c0016	a0001c0001t0001 a0001c0001t0017 a0001c0002t0010 others(17): Show a0001c0001t0001 a0001c0001t0017 a0001c0002t0010 a0001c0002t0011 a0001c0002t0024 a0001c0002t0050 a0002c0003t0009 a0002c0003t0013 a0002c0003t0022 a0002c0003t0029 a0002c0003t0053 a0002c0003t0056 a0002c0004t0039 a0002c0004t0045 a0002c0004t0067 a0002c0007t0021 a0002c0008t0027 a0002c0014t0065 a0003c0011t0004 a0005c0016t0043	a0001c0001t0001g0035 a0001c0001t0017g0064 a0001c0002t0010g0025 others(17): Show a0001c0001t0001g0035 a0001c0001t0017g0064 a0001c0002t0010g0025 a0001c0002t0011g0038 a0001c0002t0024g0036 a0001c0002t0050g0052 a0002c0003t0009g0070 a0002c0003t0013g0027 a0002c0003t0022g0054 a0002c0003t0029g0059 a0002c0003t0053g0010 a0002c0003t0056g0016 a0002c0004t0039g0053 a0002c0004t0045g0026 a0002c0004t0067g0008 a0002c0007t0021g0063 a0002c0008t0027g0042 a0002c0014t0065g0009 a0003c0011t0004g0071 a0005c0016t0043g0058	20	76	0.2632	-26	c.-67 others(45): Show c.-67+51168_-67+51193delTTCTCTCTCTCTCTCTCTCTCTCTCT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188462564	ATATATAT others(19): Show ATATATATATATATATATATATGCATG	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG01074.hp2 HG01256.hp2 others(2): Show HG00673.hp1 HG01074.hp2 HG01256.hp2 HG01361.hp1 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0006 a0001c0001 a0001c0002 a0001c0006	a0001c0001t0005 a0001c0001t0051 a0001c0001t0055 others(2): Show a0001c0001t0005 a0001c0001t0051 a0001c0001t0055 a0001c0002t0054 a0001c0006t0041	a0001c0001t0005g0032 a0001c0001t0051g0019 a0001c0001t0055g0012 others(2): Show a0001c0001t0005g0032 a0001c0001t0051g0019 a0001c0001t0055g0012 a0001c0002t0054g0018 a0001c0006t0041g0002	5	76	0.0658	-26	c.194 others(45): Show c.194-22026_194-22001delATATATATATATATATATATGCATGT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188607370	GATATATA others(19): Show GATATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00673.hp2 HG01074.hp1 others(24): Show HG00438.hp2 HG00673.hp2 HG01074.hp1 HG01167.hp1 HG01256.hp1 HG01358.hp1 HG01361.hp1 HG01978.hp1 HG02074.hp1 HG02486.hp1 HG02486.hp2 HG02602.hp1 HG02615.hp2 HG02622.hp1 HG02886.hp2 HG02896.hp1 HG02970.hp2 HG03017.hp2 HG03130.hp2 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp2 HG03453.hp1 HG03834.hp1 NA18522.hp1 NA18522.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0002 a0001c0005 others(6): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0003 a0002c0004 a0002c0007 a0002c0015 a0004c0010	a0001c0001t0005 a0001c0001t0020 a0001c0001t0057 others(24): Show a0001c0001t0005 a0001c0001t0020 a0001c0001t0057 a0001c0002t0001 a0001c0002t0010 a0001c0002t0016 a0001c0002t0019 a0001c0002t0050 a0001c0002t0054 a0001c0002t0058 a0001c0005t0036 a0001c0006t0034 a0001c0006t0064 a0002c0003t0004 a0002c0003t0029 a0002c0003t0052 a0002c0003t0053 a0002c0003t0056 a0002c0004t0003 a0002c0004t0012 a0002c0004t0039 a0002c0004t0068 a0002c0007t0002 a0002c0007t0007 a0002c0007t0021 a0002c0015t0037 a0004c0010t0035	a0001c0001t0005g0032 a0001c0001t0020g0067 a0001c0001t0057g0006 others(24): Show a0001c0001t0005g0032 a0001c0001t0020g0067 a0001c0001t0057g0006 a0001c0002t0001g0029 a0001c0002t0010g0025 a0001c0002t0016g0028 a0001c0002t0019g0041 a0001c0002t0050g0052 a0001c0002t0054g0018 a0001c0002t0058g0013 a0001c0005t0036g0075 a0001c0006t0034g0039 a0001c0006t0064g0007 a0002c0003t0004g0044 a0002c0003t0029g0059 a0002c0003t0052g0014 a0002c0003t0053g0010 a0002c0003t0056g0016 a0002c0004t0003g0050 a0002c0004t0012g0040 a0002c0004t0039g0053 a0002c0004t0068g0020 a0002c0007t0002g0073 a0002c0007t0007g0049 a0002c0007t0021g0063 a0002c0015t0037g0051 a0004c0010t0035g0060	27	76	0.3553	-26	c.430 others(43): Show c.430-1769_430-1744delTATATATATATATATATATATATATA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188755809	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01167.hp2 HG01256.hp2 others(5): Show HG01081.hp1 HG01167.hp2 HG01256.hp2 HG01361.hp2 HG03017.hp2 HG03195.hp1 HG03239.hp1 HG03834.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0002c0015	a0001c0001t0018 a0001c0001t0051 a0001c0002t0001 others(4): Show a0001c0001t0018 a0001c0001t0051 a0001c0002t0001 a0001c0002t0016 a0001c0005t0042 a0001c0006t0032 a0002c0015t0037	a0001c0001t0018g0072 a0001c0001t0051g0019 a0001c0002t0001g0029 others(5): Show a0001c0001t0018g0072 a0001c0001t0051g0019 a0001c0002t0001g0029 a0001c0002t0001g0055 a0001c0002t0016g0028 a0001c0005t0042g0037 a0001c0006t0032g0005 a0002c0015t0037g0051	8	76	0.1053	-26	c.124 others(45): Show c.1241-4273_1241-4248delAAAAAAAAAAAAAAAAAAAAAAAAAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	8/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150639811	GTGTGTGT others(19): Show GTGTGTGTGTATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG02559.hp1 HG04115.hp2 HG01167.hp1 HG02559.hp1 HG04115.hp2	a0001 a0022 a0001 a0022	a0001c0001 a0001c0005 a0022c0039 a0001c0001 a0001c0005 a0022c0039	a0001c0001t0001 a0001c0005t0001 a0022c0039t0001 a0001c0001t0001 a0001c0005t0001 a0022c0039t0001	a0001c0001t0001g0088 a0001c0005t0001g0004 a0022c0039t0001g0073 a0001c0001t0001g0088 a0001c0005t0001g0004 a0022c0039t0001g0073	3	180	0.0167	-26	c.592 others(47): Show c.5922-40706_5922-40681delTATATATATATATATATACACACA CA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150639819	GTATATAT others(19): Show GTATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0003 a0003	a0003c0042 a0003c0042	a0003c0042t0003 a0003c0042t0003	a0003c0042t0003g0180 a0003c0042t0003g0180	1	180	0.0056	-26	c.592 others(47): Show c.5922-40714_5922-40689delTATATATATATATATATATATATA TA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46673803	GGAGTGCA others(19): Show GGAGTGCAGCGGCTGTCGCCGAGGCTA	G G	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01123.hp1 HG01167.hp1 others(7): Show HG00099.hp1 HG01123.hp1 HG01167.hp1 HG01169.hp1 HG01261.hp1 HG01496.hp1 HG02083.hp1 HG02280.hp1 HG03490.hp1 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0018 a0001c0001 a0001c0002 a0001c0018	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0003 a0001c0018t0029	a0001c0001t0001g0062 a0001c0001t0002g0075 a0001c0001t0003g0053 others(7): Show a0001c0001t0001g0062 a0001c0001t0002g0075 a0001c0001t0003g0053 a0001c0001t0003g0066 a0001c0001t0003g0124 a0001c0001t0003g0135 a0001c0001t0003g0140 a0001c0001t0003g0141 a0001c0002t0003g0185 a0001c0018t0029g0113	10	274	0.0365	-26	c.579 others(43): Show c.579+4660_579+4685delTGTCGCCGAGGCTAGAGTGCAGCGGC	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115221192	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02257.hp2 HG02818.hp1 others(3): Show HG00597.hp2 HG02257.hp2 HG02818.hp1 HG03471.hp1 NA18906.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0001t0001g0046 others(3): Show a0001c0001t0001g0020 a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049	6	238	0.0252	-26	c.349 others(45): Show c.349+12475_349+12500delATATATATTTTTTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH2_chrX_115105616_115239096	115221194	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00558.hp1 HG00597.hp1 others(106): Show HG00140.hp1 HG00558.hp1 HG00597.hp1 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01261.hp1 HG01496.hp2 HG01884.hp2 HG01891.hp2 HG01928.hp1 HG01934.hp1 HG01975.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp1 HG02109.hp2 HG02129.hp1 HG02132.hp1 HG02165.hp2 HG02273.hp2 HG02293.hp1 HG02293.hp2 HG02300.hp1 HG02451.hp1 HG02559.hp2 HG02602.hp1 HG02622.hp1 HG02630.hp1 HG02895.hp1 HG02896.hp2 HG02922.hp1 HG03017.hp1 HG03041.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03239.hp1 HG03453.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03540.hp2 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03834.hp2 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18984.hp1 NA18989.hp1 NA18990.hp1 NA18998.hp1 NA19000.hp1 NA19007.hp1 NA19012.hp1 NA19062.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19074.hp1 NA19076.hp1 NA19079.hp1 NA19081.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19090.hp1 NA19091.hp1 NA19240.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20805.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0002c0002 a0003c0007 others(2): Show a0001c0001 a0002c0002 a0003c0007 a0004c0006 a0005c0008	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0002c0002t0001 a0003c0007t0007 a0004c0006t0001 a0005c0008t0001	a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0013 others(106): Show a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0103 a0001c0001t0001g0104 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0125 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0129 a0001c0001t0001g0130 a0001c0001t0001g0137 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0001g0163 a0001c0001t0001g0205 a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0233 a0001c0001t0005g0121 a0001c0001t0005g0124 a0001c0001t0006g0041 a0001c0001t0006g0223 a0002c0002t0001g0078 a0002c0002t0001g0126 a0003c0007t0007g0217 a0004c0006t0001g0206 a0005c0008t0001g0102	109	238	0.4580	-26	c.349 others(45): Show c.349+12473_349+12498delATATATATATTTTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRCH2_chrX_115105616_115239096	115221196	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAATATATATATAT	A A	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0001 a0001c0009t0001	a0001c0009t0001g0236 a0001c0009t0001g0236	1	238	0.0042	-26	c.349 others(45): Show c.349+12471_349+12496delATATATATATATTTTTTTTTTTTTTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	1/20			chrX	TogoVar
LRFN2_chr6_40386591_40592364	40435032	TATATATA others(19): Show TATATATATATATATATATATAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0025 a0001c0001t0001g0025	1	228	0.0044	-26	c.-18 others(43): Show c.-18-1927_-18-1902delCTCTCTATATATATATATATATATAT	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN2_chr6_40386591_40592364	40435034	TATATATA others(19): Show TATATATATATATATATATAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0041 a0001c0002t0001g0041	1	228	0.0044	-26	c.-18 others(43): Show c.-18-1929_-18-1904delCTCTCTCTATATATATATATATATAT	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN2_chr6_40386591_40592364	40435036	TATATATA others(19): Show TATATATATATATATATAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0001 a0001c0002t0007g0001	1	228	0.0044	-26	c.-18 others(43): Show c.-18-1931_-18-1906delCTCTCTCTCTATATATATATATATAT	LRFN2	ENSG00000156564.10	transcript	ENST00000338305.7	protein_coding	1/2			chr6	TogoVar
LRFN5_chr14_41601876_41909549	41670280	TATATATA others(19): Show TATATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03225.hp2 HG03471.hp1 others(1): Show HG02257.hp1 HG03225.hp2 HG03471.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 others(1): Show a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 a0001c0001t0004g0036	4	280	0.0143	-26	c.-19 others(47): Show c.-197+61720_-197+61745delTATATATATATATATATATATATA CA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar

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