Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRMDA_chr10_75426624_76565168	75692564	CGTGTGTG others(19): Show CGTGTGTGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0022 a0001c0001t0013g0022	1	46	0.0217	-26	c.131 others(47): Show c.131+254087_131+254112delGTGTGTGTGTGTGTGTGTGTGTGT GT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRMDA_chr10_75426624_76565168	76264406	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	46	0.0217	-26	c.517 others(45): Show c.517-59969_517-59944delAAAAAAAAAAAAAAAAAAAAAAAAAA	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP1B_chr2_140226423_142136016	140595087	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0024 a0001c0001t0006g0024	1	28	0.0357	-26	c.719 others(45): Show c.7194+3518_7194+3543delATATATATATATATATATATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	43/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	140843059	TTTTTTTT others(19): Show TTTTTTTTGTTTTTTTTTTTTTGTTTG	T T	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02723.hp1 HG03225.hp1 others(1): Show HG01261.hp2 HG02723.hp1 HG03225.hp1 HG03516.hp2	a0001 a0004 a0001 a0004	a0001c0011 a0001c0025 a0001c0026 others(1): Show a0001c0011 a0001c0025 a0001c0026 a0004c0009	a0001c0011t0001 a0001c0025t0005 a0001c0026t0001 others(1): Show a0001c0011t0001 a0001c0025t0005 a0001c0026t0001 a0004c0009t0001	a0001c0011t0001g0014 a0001c0025t0005g0018 a0001c0026t0001g0025 others(1): Show a0001c0011t0001g0014 a0001c0025t0005g0018 a0001c0026t0001g0025 a0004c0009t0001g0007	4	28	0.1429	-26	c.494 others(45): Show c.4940-1993_4940-1968delCAAACAAAAAAAAAAAAACAAAAAAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	29/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141467098	ATGTGTAT others(19): Show ATGTGTATATATATATATATATATATC	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0011 a0001c0016t0001g0011	1	28	0.0357	-26	c.343 others(45): Show c.343+13272_343+13297delGATATATATATATATATATATACACA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141810095	AAAAGAAA others(19): Show AAAAGAAAGAAAGAAAGAAAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG02145.hp2 NA19240.hp2 HG01261.hp2 HG02145.hp2 NA19240.hp2	a0001 a0001	a0001c0013 a0001c0019 a0001c0026 a0001c0013 a0001c0019 a0001c0026	a0001c0013t0002 a0001c0019t0001 a0001c0026t0001 a0001c0013t0002 a0001c0019t0001 a0001c0026t0001	a0001c0013t0002g0012 a0001c0019t0001g0016 a0001c0026t0001g0025 a0001c0013t0002g0012 a0001c0019t0001g0016 a0001c0026t0001g0025	3	28	0.1071	-26	c.205 others(41): Show c.205+158_205+183delCTTTCTTTTTCTTTCTTTCTTTCTTT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP2_chr2_169122109_169367534	169361330	GTCTCTCT others(19): Show GTCTCTCTCTGTCTCTCTCTGTCTCTC	G G	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0012 a0012	a0012c0095 a0012c0095	a0012c0095t0001 a0012c0095t0001	a0012c0095t0001g0007 a0012c0095t0001g0007	1	250	0.0040	-26	c.79+ others(39): Show c.79+965_79+990delGAGAGACAGAGAGAGACAGAGAGAGA	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRP5_chr11_68307591_68454275	68434759	GGAGCTGT others(19): Show GGAGCTGTTGATGCCCTCGCTCTCCCA	G G	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01167.hp1 HG01169.hp1 others(5): Show HG01074.hp2 HG01167.hp1 HG01169.hp1 HG01257.hp1 HG01258.hp1 HG03471.hp2 NA20300.hp1 NA20752.hp2	a0001 a0017 a0001 a0017	a0001c0002 a0017c0022 a0001c0002 a0017c0022	a0001c0002t0001 a0017c0022t0001 a0001c0002t0001 a0017c0022t0001	a0001c0002t0001g0008 a0001c0002t0001g0125 a0001c0002t0001g0182 others(5): Show a0001c0002t0001g0008 a0001c0002t0001g0125 a0001c0002t0001g0182 a0001c0002t0001g0183 a0001c0002t0001g0187 a0001c0002t0001g0188 a0001c0002t0001g0189 a0017c0022t0001g0020	8	212	0.0377	-26	c.400 others(43): Show c.4000+926_4000+951delTGTTGATGCCCTCGCTCTCCCAGAGC	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP5_chr11_68307591_68454275	68443563	ATATATAT others(19): Show ATATATATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG03492.hp2 NA18998.hp2 HG03492.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0173 a0001c0001t0001g0071 a0001c0001t0001g0173	2	212	0.0094	-26	c.448 others(45): Show c.4489-2871_4489-2846delATATATATATATATATATATATTTTT	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	21/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP6_chr12_12111025_12272044	12119990	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0107 a0002c0002t0107	a0002c0002t0107g0096 a0002c0002t0107g0096	1	262	0.0038	-26	c.11 others(37): Show c.1110_*1135delATATATATATATATATATATATATAT	LRP6	ENSG00000070018.9	transcript	ENST00000261349.9	protein_coding	23/23	1110		chr12	TogoVar
LRP8_chr1_53237364_53333070	53313386	GGGCACAG others(19): Show GGGCACAGTGCACACTCGGAGCCCAGA	G G	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01258.hp1 others(22): Show HG01168.hp1 HG01169.hp2 HG01258.hp1 HG01891.hp1 HG02055.hp2 HG02071.hp1 HG02083.hp2 HG02486.hp1 HG02683.hp1 HG02717.hp2 HG02818.hp1 HG03139.hp1 HG03669.hp1 HG03834.hp1 NA18522.hp2 NA18942.hp2 NA18960.hp2 NA18998.hp1 NA18998.hp2 NA19003.hp2 NA19004.hp2 NA19010.hp2 NA19011.hp1 NA20300.hp2 NA20752.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0011	a0001c0001 a0001c0004 a0001c0006 others(5): Show a0001c0001 a0001c0004 a0001c0006 a0001c0020 a0002c0002 a0003c0005 a0004c0007 a0011c0022	a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 others(15): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0025 a0001c0004t0002 a0001c0004t0006 a0001c0004t0022 a0001c0006t0018 a0001c0006t0026 a0001c0006t0036 a0001c0020t0008 a0002c0002t0001 a0003c0005t0009 a0004c0007t0009 a0011c0022t0048	a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0155 others(21): Show a0001c0001t0001g0151 a0001c0001t0001g0152 a0001c0001t0001g0155 a0001c0001t0001g0177 a0001c0001t0001g0234 a0001c0001t0005g0178 a0001c0001t0010g0146 a0001c0001t0014g0005 a0001c0001t0015g0179 a0001c0001t0016g0284 a0001c0001t0025g0140 a0001c0004t0002g0157 a0001c0004t0002g0176 a0001c0004t0006g0156 a0001c0004t0022g0154 a0001c0006t0018g0149 a0001c0006t0026g0153 a0001c0006t0036g0012 a0001c0020t0008g0246 a0002c0002t0001g0034 a0002c0002t0001g0047 a0003c0005t0009g0073 a0004c0007t0009g0233 a0011c0022t0048g0162	25	296	0.0845	-26	c.244 others(45): Show c.244+13461_244+13486delTCTGGGCTCCGAGTGTGCACTGTGCC	LRP8	ENSG00000157193.18	transcript	ENST00000306052.12	protein_coding	2/18			chr1	TogoVar
LRPPRC_chr2_43881224_44000989	43915228	TCTCTCAC others(19): Show TCTCTCACACACACACACACACACACA	T T	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG02055.hp1 HG02109.hp1 others(6): Show HG01346.hp2 HG02055.hp1 HG02109.hp1 HG03209.hp2 NA18964.hp1 NA19004.hp1 NA19005.hp1 NA19012.hp2 NA20300.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0016	a0001c0003 a0002c0006 a0003c0005 others(1): Show a0001c0003 a0002c0006 a0003c0005 a0016c0014	a0001c0003t0033 a0001c0003t0060 a0002c0006t0001 others(5): Show a0001c0003t0033 a0001c0003t0060 a0002c0006t0001 a0002c0006t0018 a0002c0006t0034 a0003c0005t0046 a0003c0005t0062 a0016c0014t0033	a0001c0003t0033g0139 a0001c0003t0060g0109 a0002c0006t0001g0115 others(5): Show a0001c0003t0033g0139 a0001c0003t0060g0109 a0002c0006t0001g0115 a0002c0006t0018g0114 a0002c0006t0034g0001 a0003c0005t0046g0354 a0003c0005t0062g0349 a0016c0014t0033g0138	9	358	0.0251	-26	c.314 others(45): Show c.3149-2696_3149-2671delTGTGTGTGTGTGTGTGTGTGTGAGAG	LRPPRC	ENSG00000138095.20	transcript	ENST00000260665.12	protein_coding	29/37			chr2	TogoVar
LRRC27_chr10_132327193_132386508	132358592	CAGCGTAG others(19): Show CAGCGTAGGGAGGAGCCGAGGTGGTGG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0246 a0001c0002t0003g0246	1	290	0.0035	-26	c.117 others(45): Show c.1170+2712_1170+2737delAGGGAGGAGCCGAGGTGGTGGAGCGT	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358763	CAGTGTGG others(19): Show CAGTGTGGGGAGGAGCCGAGGTGGTGG	C C	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	290	0.0035	-26	c.117 others(45): Show c.1171-2665_1171-2640delTGTGGGGAGGAGCCGAGGTGGTGGAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358809	GTGGTGGA others(19): Show GTGGTGGAGCGTGGGAAGGAGCCGAGC	G G	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02922.hp2 HG03017.hp1 others(4): Show HG02809.hp2 HG02922.hp2 HG03017.hp1 HG03225.hp1 NA18906.hp2 NA18984.hp1 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0021 a0001c0001t0031 others(2): Show a0001c0001t0001 a0001c0001t0021 a0001c0001t0031 a0001c0005t0008 a0001c0005t0015	a0001c0001t0001g0141 a0001c0001t0001g0146 a0001c0001t0021g0287 others(4): Show a0001c0001t0001g0141 a0001c0001t0001g0146 a0001c0001t0021g0287 a0001c0001t0031g0221 a0001c0005t0008g0225 a0001c0005t0015g0223 a0001c0005t0015g0224	7	290	0.0241	-26	c.117 others(45): Show c.1171-2638_1171-2613delGTGGGAAGGAGCCGAGCTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132358966	GAGGAGCC others(19): Show GAGGAGCCGAGGTGGTGGAGCGTGGGA	G G	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00673.hp1 HG01109.hp2 others(14): Show HG00280.hp2 HG00673.hp1 HG01109.hp2 HG01175.hp1 HG01358.hp2 HG01952.hp1 HG02027.hp1 HG02027.hp2 HG02056.hp2 HG02698.hp1 HG03017.hp1 HG03017.hp2 NA18747.hp2 NA18950.hp1 NA18964.hp1 NA19009.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0010	a0001c0001t0001 a0001c0001t0003 a0001c0001t0031 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0031 a0001c0002t0019 a0001c0003t0007 a0001c0010t0001 a0001c0010t0033	a0001c0001t0001g0030 a0001c0001t0001g0044 a0001c0001t0001g0062 others(14): Show a0001c0001t0001g0030 a0001c0001t0001g0044 a0001c0001t0001g0062 a0001c0001t0001g0148 a0001c0001t0001g0153 a0001c0001t0001g0161 a0001c0001t0001g0166 a0001c0001t0001g0172 a0001c0001t0001g0220 a0001c0001t0001g0222 a0001c0001t0003g0155 a0001c0001t0003g0160 a0001c0001t0031g0221 a0001c0002t0019g0214 a0001c0003t0007g0085 a0001c0010t0001g0110 a0001c0010t0033g0109	17	290	0.0586	-26	c.117 others(45): Show c.1171-2470_1171-2445delGTGGGAAGGAGCCGAGGTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132359099	CAGTGTGG others(19): Show CAGTGTGGGGAGGAGCCGAGGTGGTGG	C C	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG03225.hp1 NA18906.hp2 HG02809.hp2 HG03225.hp1 NA18906.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0008 a0001c0005t0015 a0001c0005t0008 a0001c0005t0015	a0001c0005t0008g0225 a0001c0005t0015g0223 a0001c0005t0015g0224 a0001c0005t0008g0225 a0001c0005t0015g0223 a0001c0005t0015g0224	3	290	0.0103	-26	c.117 others(45): Show c.1171-2355_1171-2330delTGTGGGGAGGAGCCGAGGTGGTGGAG	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132359108	GAGGAGCC others(19): Show GAGGAGCCGAGGTGGTGGAGCGTGGGA	G G	intron_variant intron_variant	MODIFIER	HG00735.hp1 NA18747.hp1 NA18990.hp1 others(1): Show HG00735.hp1 NA18747.hp1 NA18990.hp1 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0055 a0001c0001t0001 a0001c0002t0055	a0001c0001t0001g0039 a0001c0001t0001g0070 a0001c0001t0001g0173 others(1): Show a0001c0001t0001g0039 a0001c0001t0001g0070 a0001c0001t0001g0173 a0001c0002t0055g0269	4	290	0.0138	-26	c.117 others(45): Show c.1171-2328_1171-2303delGTGGGAAGGAGCCGAGGTGGTGGAGC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	8/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC37A3_chr17_64849130_64924478	64866563	TATATATA others(19): Show TATATATATATACATATATACACGTAC	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0106 a0002c0002t0002g0106	1	138	0.0073	-26	c.305 others(45): Show c.3053+1873_3053+1898delGTACGTGTATATATGTATATATATAT	LRRC37A3	ENSG00000176809.11	transcript	ENST00000584306.6	protein_coding	10/14			chr17	TogoVar
LRRC37B_chr17_32002383_32058487	32039498	ATATATAT others(19): Show ATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG02735.hp2 NA18612.hp2 others(18): Show HG00438.hp2 HG02735.hp2 NA18612.hp2 NA18941.hp1 NA18952.hp2 NA18953.hp2 NA18954.hp2 NA18955.hp2 NA18957.hp1 NA18960.hp2 NA18965.hp1 NA18969.hp2 NA18970.hp1 NA18974.hp2 NA18978.hp2 NA18982.hp1 NA18994.hp1 NA18995.hp2 NA19079.hp1 NA19088.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0012 a0001c0001 a0001c0012	a0001c0001t0001 a0001c0012t0001 a0001c0001t0001 a0001c0012t0001	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0096 others(16): Show a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0096 a0001c0001t0001g0141 a0001c0001t0001g0156 a0001c0001t0001g0163 a0001c0001t0001g0164 a0001c0001t0001g0165 a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0012t0001g0166	21	242	0.0868	-26	c.187 others(45): Show c.1877+3863_1877+3888delATATATATATATATATATATATGTAT	LRRC37B	ENSG00000185158.13	transcript	ENST00000543378.7	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr17	TogoVar
LRRC38_chr1_13469973_13519003	13481755	TTCTTTCC others(19): Show TTCTTTCCCTCTCTCTCCCTCTCTCCC	T T	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00733.hp1 HG01243.hp1 others(40): Show HG00597.hp2 HG00733.hp1 HG01243.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01515.hp2 HG01943.hp2 HG01952.hp1 HG02015.hp1 HG02040.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp2 HG02735.hp2 HG03239.hp1 HG03239.hp2 HG03704.hp1 NA18941.hp1 NA18941.hp2 NA18946.hp2 NA18947.hp2 NA18952.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18959.hp2 NA18977.hp2 NA18982.hp1 NA18993.hp1 NA18995.hp1 NA18995.hp2 NA19055.hp1 NA19056.hp1 NA19060.hp2 NA19065.hp2 NA19066.hp2 NA19083.hp2 NA19085.hp2 NA19088.hp2 NA19090.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0008	a0001c0001 a0001c0005 a0002c0002 others(3): Show a0001c0001 a0001c0005 a0002c0002 a0002c0003 a0004c0008 a0008c0006	a0001c0001t0001 a0001c0001t0005 a0001c0005t0001 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0005t0001 a0002c0002t0002 a0002c0002t0004 a0002c0002t0009 a0002c0003t0003 a0004c0008t0006 a0008c0006t0001	a0001c0001t0001g0085 a0001c0001t0001g0094 a0001c0001t0001g0118 others(40): Show a0001c0001t0001g0085 a0001c0001t0001g0094 a0001c0001t0001g0118 a0001c0001t0001g0125 a0001c0001t0001g0142 a0001c0001t0001g0147 a0001c0001t0001g0149 a0001c0001t0001g0159 a0001c0001t0001g0162 a0001c0001t0001g0164 a0001c0001t0001g0174 a0001c0001t0001g0207 a0001c0001t0001g0260 a0001c0001t0001g0333 a0001c0001t0001g0398 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0005g0034 a0001c0001t0005g0053 a0001c0001t0005g0056 a0001c0005t0001g0071 a0001c0005t0001g0074 a0001c0005t0001g0075 a0001c0005t0001g0076 a0001c0005t0001g0081 a0001c0005t0001g0178 a0002c0002t0002g0161 a0002c0002t0002g0190 a0002c0002t0002g0345 a0002c0002t0002g0416 a0002c0002t0004g0110 a0002c0002t0004g0175 a0002c0002t0004g0192 a0002c0002t0004g0193 a0002c0002t0004g0264 a0002c0002t0004g0271 a0002c0002t0004g0331 a0002c0002t0009g0036 a0002c0003t0003g0171 a0002c0003t0003g0194 a0002c0003t0003g0215 a0004c0008t0006g0019 a0008c0006t0001g0063	43	448	0.0960	-26	c.632 others(43): Show c.632-5682_632-5657delGGGAGAGAGGGAGAGAGAGGGAAAGA	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1			chr1	TogoVar
LRRC38_chr1_13469973_13519003	13481759	TTCCCTCT others(19): Show TTCCCTCTCTCTCCCTCTCTCCCTCTC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02647.hp1 NA19030.hp2 HG00642.hp2 HG02647.hp1 NA19030.hp2	a0002 a0002	a0002c0002 a0002c0003 a0002c0002 a0002c0003	a0002c0002t0002 a0002c0003t0001 a0002c0003t0003 a0002c0002t0002 a0002c0003t0001 a0002c0003t0003	a0002c0002t0002g0230 a0002c0003t0001g0375 a0002c0003t0003g0295 a0002c0002t0002g0230 a0002c0003t0001g0375 a0002c0003t0003g0295	3	448	0.0067	-26	c.632 others(43): Show c.632-5686_632-5661delGAGAGGGAGAGAGGGAGAGAGAGGGA	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1			chr1	TogoVar
LRRC42_chr1_53941350_53973168	53945868	CCTCCACC others(19): Show CCTCCACCGAGTTCCCGGGCGCGCTCG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00558.hp1 others(97): Show HG00099.hp2 HG00280.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01070.hp1 HG01109.hp2 HG01167.hp2 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01884.hp2 HG01891.hp2 HG02055.hp1 HG02080.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02145.hp1 HG02145.hp2 HG02257.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02615.hp1 HG02630.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02738.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03710.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA18906.hp2 NA18956.hp2 NA18966.hp1 NA18969.hp2 NA18973.hp1 NA18983.hp2 NA18984.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19056.hp2 NA19064.hp2 NA19067.hp1 NA19070.hp1 NA19081.hp1 NA19240.hp1 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 others(1): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0004 a0002c0003t0002	a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 others(40): Show a0001c0002t0001g0006 a0001c0002t0001g0007 a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0040 a0001c0002t0001g0046 a0001c0002t0001g0047 a0001c0002t0001g0048 a0001c0002t0001g0049 a0001c0002t0002g0002 a0001c0002t0002g0008 a0001c0002t0002g0012 a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0023 a0001c0002t0002g0024 a0001c0002t0002g0025 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0042 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0125 a0001c0002t0002g0126 a0001c0002t0002g0127 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0131 a0001c0002t0002g0132 a0001c0002t0002g0133 a0001c0002t0002g0134 a0001c0002t0002g0135 a0001c0002t0002g0136 a0001c0002t0002g0139 a0001c0002t0002g0140 a0001c0002t0002g0141 a0001c0002t0002g0143 a0001c0002t0004g0137 a0001c0002t0004g0138 a0002c0003t0002g0026 a0002c0003t0002g0037	100	316	0.3165	-26	c.-72 others(35): Show c.-729_-704delCTCCACCGAGTTCCCGGGCGCGCTCG	LRRC42	ENSG00000116212.16	transcript	ENST00000371370.8	protein_coding		481		chr1	TogoVar
LRRC4B_chr19_50511892_50573435	50513561	GGGCAGAG others(19): Show GGGCAGAGACACAGTGGGGTGGACAGA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18973.hp2 NA19002.hp2 NA19087.hp2 NA18973.hp2 NA19002.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0188 a0001c0001t0001g0197 a0001c0001t0001g0263 a0001c0001t0001g0188 a0001c0001t0001g0197 a0001c0001t0001g0263	3	360	0.0083	-26	c.39 others(37): Show c.3984_*4009delTCTGTCCACCCCACTGTGTCTCTGCC	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding		3330		chr19	TogoVar
LRRC4B_chr19_50511892_50573435	50520225	AAAAAAAA others(19): Show AAAAAAAAAAAAAAAAAAAAAAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00733.hp2 HG01106.hp1 others(19): Show HG00642.hp2 HG00733.hp2 HG01106.hp1 HG01255.hp2 HG01361.hp1 HG02258.hp2 HG02486.hp2 HG02602.hp2 HG02630.hp2 HG02717.hp2 HG02735.hp2 HG03130.hp1 HG03490.hp1 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03704.hp1 HG04184.hp2 NA18906.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0004c0006 a0001c0001 a0001c0003 a0004c0006	a0001c0001t0001 a0001c0001t0003 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0003t0001 a0004c0006t0001	a0001c0001t0001g0008 a0001c0001t0001g0029 a0001c0001t0001g0037 others(19): Show a0001c0001t0001g0008 a0001c0001t0001g0029 a0001c0001t0001g0037 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0063 a0001c0001t0001g0099 a0001c0001t0001g0137 a0001c0001t0001g0141 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0312 a0001c0001t0001g0317 a0001c0001t0001g0321 a0001c0001t0001g0322 a0001c0001t0001g0329 a0001c0001t0001g0340 a0001c0001t0003g0355 a0001c0003t0001g0049 a0001c0003t0001g0144 a0001c0003t0001g0145 a0004c0006t0001g0073	22	360	0.0611	-26	c.298 others(41): Show c.298-836_298-811delCTTCTTTTTTTTTTTTTTTTTTTTTT	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40665338	ATATATAT others(19): Show ATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03225.hp2 HG03098.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0020 a0001c0001t0001g0007 a0001c0001t0001g0020	2	48	0.0417	-26	c.-40 others(47): Show c.-406-17086_-406-17061delCATATATATATATATATATATATA TA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40936014	TTATATAT others(19): Show TTATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG03139.hp1 HG01074.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0019 a0001c0001t0002g0036 a0001c0001t0002g0019 a0001c0001t0002g0036	2	48	0.0417	-26	c.-49 others(45): Show c.-495-2317_-495-2292delTATATATATATATATATATATATATA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40987654	TCATATAT others(19): Show TCATATATATGAGATATAAATGATATA	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02965.hp2 HG03453.hp1 others(1): Show HG02055.hp1 HG02965.hp2 HG03453.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0047 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0041 a0001c0001t0001g0047 a0001c0002t0001g0022	4	48	0.0833	-26	c.-49 others(47): Show c.-495-53957_-495-53932delTATATCATTTATATCTCATATATA TG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41143295	TTTTCCAG others(19): Show TTTTCCAGAACTAAGAAAGAATTTCAA	T T	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02280.hp2 HG02572.hp1 others(4): Show HG01074.hp2 HG02280.hp2 HG02572.hp1 HG02809.hp1 NA18906.hp2 NA18989.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0001 a0001c0001t0001 a0001c0001t0002 a0001c0002t0001	a0001c0001t0001g0006 a0001c0001t0001g0031 a0001c0001t0001g0037 others(4): Show a0001c0001t0001g0006 a0001c0001t0001g0031 a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0002g0026 a0001c0001t0002g0036 a0001c0002t0001g0030	7	48	0.1458	-26	c.-49 others(49): Show c.-495-209598_-495-209573delTTGAAATTCTTTCTTAGTTCTG GAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC51_chr11_72075850_72101895	72084861	CGTGTGTG others(19): Show CGTGTGTGTGTGTGTGTGTGTGTGTGT	C C	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02486.hp1 HG02559.hp1 others(4): Show HG01074.hp1 HG02486.hp1 HG02559.hp1 HG02818.hp2 HG02886.hp2 HG03139.hp2 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0045 a0001c0001t0001g0052 others(1): Show a0001c0001t0001g0011 a0001c0001t0001g0045 a0001c0001t0001g0052 a0001c0001t0001g0054	7	336	0.0208	-26	c.-13 others(45): Show c.-139-3417_-139-3392delGTGTGTGTGTGTGTGTGTGTGTGTGT	LRRC51	ENSG00000184154.16	transcript	ENST00000289488.8	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC53_chr1_74464376_74517611	74500603	CAAAAAAA others(19): Show CAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0021 a0021	a0021c0027 a0021c0027	a0021c0027t0003 a0021c0027t0003	a0021c0027t0003g0025 a0021c0027t0003g0025	1	342	0.0029	-26	c.-27 others(45): Show c.-27+11897_-27+11922delTTTTTTTTTTTTTTTTTTTTTTTTTT	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608844	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTCTCTCTCTATA	C C	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0091 a0001c0009t0091	a0001c0009t0091g0090 a0001c0009t0091g0090	1	108	0.0093	-26	c.2+4 others(41): Show c.2+40205_2+40230delCTCTCTCTCTCTCTCTCTCTCTATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608846	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTCTCTCTATATA	C C	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp1 HG02647.hp1 HG01978.hp2 HG02145.hp1 HG02647.hp1	a0001 a0003 a0005 a0001 a0003 a0005	a0001c0011 a0003c0007 a0005c0013 a0001c0011 a0003c0007 a0005c0013	a0001c0011t0088 a0003c0007t0090 a0005c0013t0010 a0001c0011t0088 a0003c0007t0090 a0005c0013t0010	a0001c0011t0088g0091 a0003c0007t0090g0093 a0005c0013t0010g0061 a0001c0011t0088g0091 a0003c0007t0090g0093 a0005c0013t0010g0061	3	108	0.0278	-26	c.2+4 others(41): Show c.2+40207_2+40232delCTCTCTCTCTCTCTCTCTCTATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608848	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTCTCTATATATA	C C	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02630.hp2 NA18954.hp2 others(1): Show HG02486.hp2 HG02630.hp2 NA18954.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0017 a0001c0001 a0001c0003 a0001c0017	a0001c0001t0047 a0001c0001t0089 a0001c0003t0031 others(1): Show a0001c0001t0047 a0001c0001t0089 a0001c0003t0031 a0001c0017t0052	a0001c0001t0047g0021 a0001c0001t0089g0095 a0001c0003t0031g0034 others(1): Show a0001c0001t0047g0021 a0001c0001t0089g0095 a0001c0003t0031g0034 a0001c0017t0052g0017	4	108	0.0370	-26	c.2+4 others(41): Show c.2+40209_2+40234delCTCTCTCTCTCTCTCTCTATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608850	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTCTATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0022 a0001c0001t0003g0022	1	108	0.0093	-26	c.2+4 others(41): Show c.2+40211_2+40236delCTCTCTCTCTCTCTCTATATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608852	CTCTCTCT others(19): Show CTCTCTCTCTCTCTCTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03710.hp1 HG03130.hp2 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0066 a0001c0001t0018 a0001c0001t0066	a0001c0001t0018g0023 a0001c0001t0066g0073 a0001c0001t0018g0023 a0001c0001t0066g0073	2	108	0.0185	-26	c.2+4 others(41): Show c.2+40213_2+40238delCTCTCTCTCTCTCTATATATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781733	AAGAGAGA others(19): Show AAGAGAGAGAGAGAGAGAGAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0067 a0001c0001t0067	a0001c0001t0067g0075 a0001c0001t0067g0075	1	108	0.0093	-26	c.304 others(45): Show c.304-10302_304-10277delGAGAGAGAGAGAGAGAGAGAGAGAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69939021	ATATATAT others(19): Show ATATATATATCTATATATATCTATATC	A A	intron_variant intron_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0002 a0001c0001t0041g0002	1	108	0.0093	-26	c.711 others(43): Show c.711+7455_711+7480delATATATCTATATATATCTATATCTAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	8/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC8E_chr19_7883510_7907016	7891524	GGTGTGTG others(19): Show GGTGTGTGTGTGTGTGTGTGTGTTTGT	G G	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0010 a0003c0005t0010	a0003c0005t0010g0178 a0003c0005t0010g0178	1	390	0.0026	-26	c.-6+ others(41): Show c.-6+2941_-6+2966delGTGTGTTTGTGTGTGTGTGTGTGTGT	LRRC8E	ENSG00000171017.11	transcript	ENST00000306708.11	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
LRRCC1_chr8_85102238_85151080	85144430	GTGTGTGT others(19): Show GTGTGTGTGTGTGTGTATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0058 a0004c0005t0001g0058	1	326	0.0031	-26	c.297 others(43): Show c.2977-957_2977-932delGTGTGTGTGTGTGTATATATATATAT	LRRCC1	ENSG00000133739.16	transcript	ENST00000360375.8	protein_coding	18/18		INFO_REALIGN_3_PRIME	chr8	TogoVar
LRRD1_chr7_92139842_92184142	92174470	AATATATA others(19): Show AATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA18962.hp1 NA18962.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0321 a0002c0002t0001g0321	1	360	0.0028	-26	c.-75 others(43): Show c.-75+4511_-75+4536delATATATATATATATATATATATATAT	LRRD1	ENSG00000240720.10	transcript	ENST00000458448.6	protein_coding	1/5			chr7	TogoVar
LRRK1_chr15_100914357_101083257	101043432	TCCATGAG others(19): Show TCCATGAGAACGTTCAGAGTAAGGCAG	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00280.hp1 HG00280.hp2 others(141): Show HG00099.hp1 HG00280.hp1 HG00280.hp2 HG00323.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00639.hp2 HG00673.hp2 HG00733.hp2 HG00738.hp1 HG00741.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01074.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01175.hp2 HG01192.hp2 HG01255.hp1 HG01255.hp2 HG01257.hp1 HG01358.hp1 HG01358.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp2 HG01891.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01981.hp1 HG01993.hp1 HG01993.hp2 HG02071.hp1 HG02074.hp1 HG02080.hp2 HG02155.hp2 HG02165.hp1 HG02258.hp2 HG02293.hp1 HG02300.hp1 HG02300.hp2 HG02486.hp1 HG02486.hp2 HG02523.hp2 HG02615.hp2 HG02647.hp2 HG02683.hp1 HG02735.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp1 HG03486.hp2 HG03490.hp2 HG03491.hp2 HG03516.hp1 HG03688.hp2 HG03704.hp1 HG03710.hp1 HG03831.hp1 HG03834.hp1 HG03834.hp2 HG03927.hp2 HG03942.hp2 HG04115.hp1 HG04184.hp2 HG04199.hp1 HG04199.hp2 HG04228.hp2 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18939.hp1 NA18941.hp1 NA18941.hp2 NA18943.hp2 NA18944.hp2 NA18946.hp1 NA18946.hp2 NA18947.hp2 NA18953.hp1 NA18956.hp1 NA18960.hp1 NA18960.hp2 NA18961.hp2 NA18966.hp1 NA18966.hp2 NA18967.hp2 NA18968.hp1 NA18971.hp1 NA18974.hp2 NA18981.hp1 NA18983.hp2 NA19004.hp1 NA19009.hp2 NA19010.hp1 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19055.hp2 NA19056.hp1 NA19057.hp2 NA19062.hp2 NA19063.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp1 NA19070.hp2 NA19074.hp1 NA19077.hp2 NA19083.hp1 NA19085.hp1 NA19088.hp1 NA19088.hp2 NA19090.hp1 NA19091.hp2 NA20129.hp1 NA20129.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0002 a0003 others(14): Show a0001 a0002 a0003 a0004 a0005 a0008 a0009 a0012 a0013 a0015 a0017 a0018 a0019 a0023 a0026 a0028 a0031	a0001c0006 a0001c0007 a0001c0008 others(40): Show a0001c0006 a0001c0007 a0001c0008 a0001c0011 a0001c0016 a0001c0017 a0001c0029 a0001c0037 a0001c0063 a0001c0071 a0001c0079 a0001c0080 a0001c0092 a0001c0097 a0001c0098 a0002c0001 a0002c0005 a0002c0015 a0002c0020 a0002c0021 a0002c0026 a0002c0032 a0002c0068 a0003c0074 a0003c0115 a0004c0058 a0004c0084 a0004c0085 a0005c0019 a0005c0060 a0005c0076 a0008c0038 a0009c0024 a0012c0117 a0013c0113 a0015c0059 a0017c0093 a0018c0064 a0019c0072 a0023c0062 a0026c0087 a0028c0112 a0031c0041	a0001c0006t0159 a0001c0006t0193 a0001c0006t0194 others(120): Show a0001c0006t0159 a0001c0006t0193 a0001c0006t0194 a0001c0006t0199 a0001c0006t0227 a0001c0006t0253 a0001c0006t0254 a0001c0006t0259 a0001c0007t0212 a0001c0007t0216 a0001c0007t0217 a0001c0007t0218 a0001c0007t0257 a0001c0007t0258 a0001c0007t0261 a0001c0007t0262 a0001c0008t0030 a0001c0008t0031 a0001c0008t0036 a0001c0008t0197 a0001c0008t0198 a0001c0011t0016 a0001c0011t0056 a0001c0011t0057 a0001c0011t0090 a0001c0016t0208 a0001c0016t0220 a0001c0017t0255 a0001c0029t0264 a0001c0037t0185 a0001c0063t0161 a0001c0071t0089 a0001c0079t0206 a0001c0080t0163 a0001c0092t0001 a0001c0097t0195 a0001c0098t0037 a0002c0001t0001 a0002c0001t0002 a0002c0001t0003 a0002c0001t0005 a0002c0001t0008 a0002c0001t0011 a0002c0001t0012 a0002c0001t0013 a0002c0001t0020 a0002c0001t0022 a0002c0001t0023 a0002c0001t0083 a0002c0001t0084 a0002c0001t0100 a0002c0001t0101 a0002c0001t0105 a0002c0001t0106 a0002c0001t0107 a0002c0001t0108 a0002c0001t0113 a0002c0001t0115 a0002c0001t0116 a0002c0001t0118 a0002c0001t0119 a0002c0001t0122 a0002c0001t0124 a0002c0001t0126 a0002c0001t0136 a0002c0001t0137 a0002c0001t0138 a0002c0001t0139 a0002c0001t0141 a0002c0001t0156 a0002c0001t0266 a0002c0001t0267 a0002c0005t0002 a0002c0005t0005 a0002c0005t0008 a0002c0005t0012 a0002c0005t0045 a0002c0005t0109 a0002c0005t0111 a0002c0005t0117 a0002c0005t0128 a0002c0005t0140 a0002c0005t0235 a0002c0005t0238 a0002c0005t0239 a0002c0015t0085 a0002c0015t0104 a0002c0015t0129 a0002c0015t0131 a0002c0020t0003 a0002c0020t0114 a0002c0021t0110 a0002c0021t0130 a0002c0021t0145 a0002c0026t0102 a0002c0026t0229 a0002c0032t0120 a0002c0032t0142 a0002c0068t0013 a0003c0074t0033 a0003c0115t0225 a0004c0058t0151 a0004c0084t0214 a0004c0085t0213 a0005c0019t0025 a0005c0019t0146 a0005c0019t0147 a0005c0060t0086 a0005c0076t0025 a0008c0038t0046 a0008c0038t0201 a0009c0024t0148 a0009c0024t0149 a0012c0117t0013 a0013c0113t0002 a0015c0059t0121 a0017c0093t0127 a0018c0064t0143 a0019c0072t0215 a0023c0062t0019 a0026c0087t0103 a0028c0112t0196 a0031c0041t0020	a0001c0006t0159g0140 a0001c0006t0193g0100 a0001c0006t0194g0024 others(141): Show a0001c0006t0159g0140 a0001c0006t0193g0100 a0001c0006t0194g0024 a0001c0006t0199g0334 a0001c0006t0227g0124 a0001c0006t0253g0163 a0001c0006t0254g0133 a0001c0006t0259g0120 a0001c0007t0212g0075 a0001c0007t0216g0006 a0001c0007t0217g0107 a0001c0007t0218g0110 a0001c0007t0257g0232 a0001c0007t0258g0231 a0001c0007t0261g0103 a0001c0007t0262g0335 a0001c0008t0030g0042 a0001c0008t0030g0324 a0001c0008t0031g0307 a0001c0008t0031g0310 a0001c0008t0036g0304 a0001c0008t0197g0227 a0001c0008t0198g0059 a0001c0011t0016g0093 a0001c0011t0016g0167 a0001c0011t0056g0336 a0001c0011t0057g0016 a0001c0011t0090g0117 a0001c0016t0208g0015 a0001c0016t0220g0014 a0001c0017t0255g0326 a0001c0029t0264g0126 a0001c0037t0185g0226 a0001c0063t0161g0144 a0001c0071t0089g0094 a0001c0079t0206g0082 a0001c0080t0163g0084 a0001c0092t0001g0045 a0001c0097t0195g0311 a0001c0098t0037g0235 a0002c0001t0001g0032 a0002c0001t0001g0044 a0002c0001t0002g0180 a0002c0001t0002g0188 a0002c0001t0002g0205 a0002c0001t0002g0223 a0002c0001t0002g0228 a0002c0001t0002g0242 a0002c0001t0003g0050 a0002c0001t0003g0198 a0002c0001t0003g0206 a0002c0001t0003g0290 a0002c0001t0003g0303 a0002c0001t0005g0092 a0002c0001t0005g0236 a0002c0001t0005g0285 a0002c0001t0005g0286 a0002c0001t0008g0293 a0002c0001t0008g0299 a0002c0001t0011g0218 a0002c0001t0011g0230 a0002c0001t0012g0191 a0002c0001t0013g0185 a0002c0001t0020g0229 a0002c0001t0022g0255 a0002c0001t0022g0264 a0002c0001t0023g0192 a0002c0001t0083g0176 a0002c0001t0084g0220 a0002c0001t0100g0301 a0002c0001t0101g0263 a0002c0001t0105g0056 a0002c0001t0106g0292 a0002c0001t0107g0251 a0002c0001t0108g0054 a0002c0001t0113g0257 a0002c0001t0115g0065 a0002c0001t0116g0244 a0002c0001t0118g0031 a0002c0001t0119g0041 a0002c0001t0122g0256 a0002c0001t0124g0288 a0002c0001t0126g0297 a0002c0001t0136g0177 a0002c0001t0137g0057 a0002c0001t0138g0055 a0002c0001t0139g0270 a0002c0001t0141g0294 a0002c0001t0156g0036 a0002c0001t0266g0308 a0002c0001t0267g0306 a0002c0005t0002g0147 a0002c0005t0002g0148 a0002c0005t0005g0145 a0002c0005t0008g0151 a0002c0005t0012g0027 a0002c0005t0012g0139 a0002c0005t0045g0168 a0002c0005t0109g0099 a0002c0005t0111g0025 a0002c0005t0117g0143 a0002c0005t0128g0141 a0002c0005t0140g0160 a0002c0005t0235g0134 a0002c0005t0238g0131 a0002c0005t0239g0132 a0002c0015t0085g0066 a0002c0015t0104g0068 a0002c0015t0129g0043 a0002c0015t0131g0067 a0002c0020t0003g0086 a0002c0020t0114g0287 a0002c0021t0110g0225 a0002c0021t0130g0266 a0002c0021t0145g0062 a0002c0026t0102g0165 a0002c0026t0229g0135 a0002c0032t0120g0170 a0002c0032t0142g0020 a0002c0068t0013g0331 a0003c0074t0033g0158 a0003c0115t0225g0001 a0004c0058t0151g0074 a0004c0084t0214g0022 a0004c0085t0213g0319 a0005c0019t0025g0087 a0005c0019t0146g0222 a0005c0019t0147g0315 a0005c0060t0086g0333 a0005c0076t0025g0316 a0008c0038t0046g0265 a0008c0038t0201g0258 a0009c0024t0148g0330 a0009c0024t0149g0329 a0012c0117t0013g0194 a0013c0113t0002g0069 a0015c0059t0121g0155 a0017c0093t0127g0281 a0018c0064t0143g0078 a0019c0072t0215g0112 a0023c0062t0019g0138 a0026c0087t0103g0064 a0028c0112t0196g0097 a0031c0041t0020g0328	144	338	0.4260	-26	c.296 others(45): Show c.2964-2546_2964-2521delATGAGAACGTTCAGAGTAAGGCAGCC	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	20/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRTM4_chr2_76742685_77527376	77276686	CATATATA others(19): Show CATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03486.hp1 NA18522.hp1 HG03098.hp1 HG03486.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0003g0060 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0003g0060	3	128	0.0234	-26	c.155 others(49): Show c.1551+241606_1551+241631delATATATATATATATATATATAT ATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77457004	GTATATAT others(19): Show GTATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0069 a0001c0001t0002g0069	1	128	0.0078	-26	c.155 others(47): Show c.1551+61288_1551+61313delTATATATATATATATATATATATA TA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77477893	AAAAGAAA others(19): Show AAAAGAAAGAAAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02630.hp2 HG03490.hp2 HG02145.hp1 HG02630.hp2 HG03490.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0002g0007 a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0002g0007	3	128	0.0234	-26	c.155 others(47): Show c.1551+40399_1551+40424delCTTTCTTTCTTTCTTTTTCTTTCT TT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRTM2_chr12_1815565_1841753	1822449	TACCACCC others(19): Show TACCACCCTGAGCCCAGCCCCAGGGAC	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03209.hp1 HG02145.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0344 a0001c0001t0005g0345 a0001c0001t0005g0344 a0001c0001t0005g0345	2	462	0.0043	-26	c.-25 others(45): Show c.-259+1650_-259+1675delAGCCCCAGGGACACCACCCTGAGCCC	LRTM2	ENSG00000166159.11	transcript	ENST00000299194.6	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRTM2_chr12_1815565_1841753	1822464	AGCCCCAG others(19): Show AGCCCCAGGGACACCACCCTGAGCCCG	A A	intron_variant intron_variant	MODIFIER	HG02717.hp2 NA21309.hp2 HG02717.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	a0001c0001t0002g0343 a0001c0001t0004g0166 a0001c0001t0002g0343 a0001c0001t0004g0166	2	462	0.0043	-26	c.-25 others(45): Show c.-259+1660_-259+1685delACACCACCCTGAGCCCGGCCCCAGGG	LRTM2	ENSG00000166159.11	transcript	ENST00000299194.6	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr12	TogoVar
LSAMP_chr3_115797374_116450487	116031538	CTTTTTTT others(19): Show CTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01175.hp1 HG01257.hp1 others(15): Show HG01069.hp2 HG01175.hp1 HG01257.hp1 HG01361.hp2 HG01433.hp1 HG01433.hp2 HG01978.hp2 HG01993.hp2 HG02293.hp2 HG02735.hp2 HG02895.hp2 HG03130.hp2 HG03540.hp2 HG04184.hp1 NA18977.hp2 NA18984.hp1 NA20805.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(15): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0001t0010 a0001c0001t0015 a0001c0001t0017 a0001c0001t0023 a0001c0001t0032 a0001c0001t0035 a0001c0001t0036 a0001c0001t0059 a0001c0001t0063 a0001c0001t0072 a0001c0002t0001 a0001c0002t0014 a0001c0002t0052 a0001c0002t0056	a0001c0001t0001g0058 a0001c0001t0002g0061 a0001c0001t0003g0078 others(15): Show a0001c0001t0001g0058 a0001c0001t0002g0061 a0001c0001t0003g0078 a0001c0001t0008g0032 a0001c0001t0010g0054 a0001c0001t0015g0059 a0001c0001t0017g0101 a0001c0001t0023g0077 a0001c0001t0032g0055 a0001c0001t0035g0052 a0001c0001t0036g0080 a0001c0001t0059g0060 a0001c0001t0063g0096 a0001c0001t0072g0063 a0001c0002t0001g0084 a0001c0002t0014g0010 a0001c0002t0052g0051 a0001c0002t0056g0062	18	104	0.1731	-26	c.389 others(45): Show c.389-11924_389-11899delAAAAAAAAAAAAAAAAAAAAAAAAAA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	2/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645531	GACAGACA others(19): Show GACAGACACACACACACACACACACAC	G G	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01257.hp1 HG01978.hp2 others(2): Show HG01255.hp1 HG01257.hp1 HG01978.hp2 NA18965.hp2 NA18998.hp2	a0001 a0001	a0001c0003 a0001c0005 a0001c0013 a0001c0003 a0001c0005 a0001c0013	a0001c0003t0002 a0001c0003t0027 a0001c0005t0002 others(1): Show a0001c0003t0002 a0001c0003t0027 a0001c0005t0002 a0001c0013t0073	a0001c0003t0002g0149 a0001c0003t0027g0207 a0001c0005t0002g0187 others(2): Show a0001c0003t0002g0149 a0001c0003t0027g0207 a0001c0005t0002g0187 a0001c0005t0002g0193 a0001c0013t0073g0142	5	408	0.0123	-26	c.162 others(43): Show c.1623+607_1623+632delGTGTGTGTGTGTGTGTGTGTGTCTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645549	CACACACA others(19): Show CACACACACACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01168.hp1 HG01169.hp2 others(10): Show HG01167.hp1 HG01168.hp1 HG01169.hp2 HG01993.hp1 HG02132.hp1 HG02165.hp2 HG02293.hp2 NA18959.hp1 NA18986.hp1 NA19001.hp1 NA19081.hp1 NA19084.hp2 NA19085.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0012	a0001c0001 a0001c0003 a0002c0002 others(2): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0012c0014	a0001c0001t0003 a0001c0001t0004 a0001c0003t0002 others(7): Show a0001c0001t0003 a0001c0001t0004 a0001c0003t0002 a0001c0003t0005 a0001c0003t0008 a0002c0002t0010 a0003c0004t0001 a0003c0004t0002 a0003c0004t0009 a0012c0014t0004	a0001c0001t0003g0297 a0001c0001t0004g0088 a0001c0003t0002g0190 others(10): Show a0001c0001t0003g0297 a0001c0001t0004g0088 a0001c0003t0002g0190 a0001c0003t0005g0151 a0001c0003t0005g0152 a0001c0003t0005g0199 a0001c0003t0008g0237 a0002c0002t0010g0380 a0002c0002t0010g0382 a0003c0004t0001g0035 a0003c0004t0002g0053 a0003c0004t0009g0034 a0012c0014t0004g0083	13	408	0.0319	-26	c.162 others(43): Show c.1623+589_1623+614delCTGTCTGTGTGTGTGTGTGTGTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar

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