Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SYN3_chr22_32502820_33063381	33008924	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0127 a0001c0001t0029g0127	1	50	0.0200	-28	c.-16 others(47): Show c.-162-2128_-162-2101delTTTTTTTTTTTTTTTTTTTTTTTTTT TT	SYN3	ENSG00000185666.16	transcript	ENST00000358763.7	protein_coding	1/13			chr22	TogoVar
SYNDIG1_chr20_24464629_24671616	24640473	AGAAGGAA others(21): Show AGAAGGAAGGAAGGAAGGAAGGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0095 a0001c0001t0001g0095	1	54	0.0185	-28	c.619 others(47): Show c.619-24842_619-24815delAGGAAGGAAGGAAGGAAGGAAGGAAG GA	SYNDIG1	ENSG00000101463.6	transcript	ENST00000376862.4	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr20	TogoVar
SYNE1_chr6_152116687_152642362	152253813	GTTTGGTT others(21): Show GTTTGGTTTTTTTTTTTTTTTTTTTTTTT	G G	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0092 a0092	a0092c0109 a0092c0109	a0092c0109t0005 a0092c0109t0005	a0092c0109t0005g0068 a0092c0109t0005g0068	1	125	0.0080	-28	c.194 others(49): Show c.19470+1039_19470+1066delAAAAAAAAAAAAAAAAAAAAAAAC CAAA	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	104/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152297798	TGTGTGTG others(21): Show TGTGTGTGTGTGTGTGTGTGTGTGTGCGC	T T	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0056 a0056	a0056c0072 a0056c0072	a0056c0072t0002 a0056c0072t0002	a0056c0072t0002g0015 a0056c0072t0002g0015	1	172	0.0058	-28	c.176 others(49): Show c.17682+2815_17682+2842delGCGCACACACACACACACACACAC ACAC	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	93/145			chr6	TogoVar
SYNE1_chr6_152116687_152642362	152604990	AAGAAAGA others(21): Show AAGAAAGAAAGAAAGAAAGAGAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0124 a0124	a0124c0037 a0124c0037	a0124c0037t0001 a0124c0037t0001	a0124c0037t0001g0058 a0124c0037t0001g0058	1	169	0.0059	-28	c.67+ others(45): Show c.67+23247_67+23274delCTCTCTCTCTCTTTCTTTCTTTCTTTCT	SYNE1	ENSG00000131018.25	transcript	ENST00000367255.10	protein_coding	3/145			chr6	TogoVar
SYNE2_chr14_63848004_64231433	64014929	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01891.hp1 HG02622.hp2 others(4): Show HG01884.hp1 HG01891.hp1 HG02622.hp2 HG02897.hp2 HG02922.hp2 HG03130.hp1 NA20129.hp1	a0009 a0016 a0019 others(2): Show a0009 a0016 a0019 a0034 a0071	a0009c0078 a0009c0079 a0016c0014 others(3): Show a0009c0078 a0009c0079 a0016c0014 a0019c0031 a0034c0072 a0071c0030	a0009c0078t0001 a0009c0079t0002 a0016c0014t0001 others(3): Show a0009c0078t0001 a0009c0079t0002 a0016c0014t0001 a0019c0031t0004 a0034c0072t0002 a0071c0030t0003	a0009c0078t0001g0085 a0009c0079t0002g0087 a0016c0014t0001g0098 others(4): Show a0009c0078t0001g0085 a0009c0079t0002g0087 a0016c0014t0001g0098 a0016c0014t0001g0099 a0019c0031t0004g0102 a0034c0072t0002g0018 a0071c0030t0003g0101	7	43	0.1628	-28	c.472 others(47): Show c.4729-1525_4729-1498delTATATATATATATATATATATATATA TA	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	32/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNE2_chr14_63848004_64231433	64015021	GTATATAA others(21): Show GTATATAAATATATATGTATATATGTATA	G G	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18939.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0071 a0001c0004t0002g0071	1	148	0.0068	-28	c.472 others(47): Show c.4729-1434_4729-1407delATATATGTATATATATAAATATATAT GT	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	32/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNE2_chr14_63848004_64231433	64015047	ATATATAT others(21): Show ATATATATAAATATATATGTGTATATATG	A A	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0056 a0056	a0056c0073 a0056c0073	a0056c0073t0003 a0056c0073t0003	a0056c0073t0003g0019 a0056c0073t0003g0019	1	148	0.0068	-28	c.472 others(47): Show c.4729-1417_4729-1390delAATATATATGTGTATATATGTATATA TA	SYNE2	ENSG00000054654.20	transcript	ENST00000555002.6	protein_coding	32/115		INFO_REALIGN_3_PRIME	chr14	TogoVar
SYNGR3_chr16_1984970_1999275	1986781	CAGGAGAG others(21): Show CAGGAGAGAGAGACCACAGGGTGAGAGTG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	426	0.0023	-28	c.-33 others(39): Show c.-3321_-3294delAGGAGAGAGAGACCACAGGGTGAGAGTG	SYNGR3	ENSG00000127561.16	transcript	ENST00000248121.7	protein_coding		3188		chr16	TogoVar
SYNJ2_chr6_157976863_158104176	158088034	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG03130.hp2 HG02897.hp2 HG03130.hp2	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0003 a0002c0010t0003	a0002c0010t0003g0249 a0002c0010t0003g0250 a0002c0010t0003g0249 a0002c0010t0003g0250	2	90	0.0222	-28	c.334 others(45): Show c.3344-609_3344-582delTTTTTTTTTTTTTTTTTTTTTTTTTTTT	SYNJ2	ENSG00000078269.15	transcript	ENST00000355585.9	protein_coding	23/26		INFO_REALIGN_3_PRIME	chr6	TogoVar
SYNPO2_chr4_118883854_119066247	119007225	TATATATA others(21): Show TATATATATATATATATATATGTATATAC	T T	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03239.hp2 NA18981.hp1 HG03017.hp1 HG03239.hp2 NA18981.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0006 a0004c0011 a0001c0001 a0003c0006 a0004c0011	a0001c0001t0008 a0003c0006t0001 a0004c0011t0003 a0001c0001t0008 a0003c0006t0001 a0004c0011t0003	a0001c0001t0008g0039 a0003c0006t0001g0125 a0004c0011t0003g0222 a0001c0001t0008g0039 a0003c0006t0001g0125 a0004c0011t0003g0222	3	308	0.0097	-28	c.106 others(47): Show c.106-16184_106-16157delGTATATACATATATATATATATATAT AT	SYNPO2	ENSG00000172403.11	transcript	ENST00000307142.9	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr4	TogoVar
SYNPR_chr3_63273308_63621924	63314024	TATATATA others(21): Show TATATATATATCCATATATATATATATCC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG01106.hp1 others(4): Show HG00099.hp2 HG00323.hp2 HG01106.hp1 HG01361.hp2 HG01433.hp1 HG01515.hp2 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007	a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0091 others(4): Show a0001c0001t0001g0083 a0001c0001t0001g0086 a0001c0001t0001g0091 a0001c0001t0002g0085 a0001c0001t0002g0096 a0001c0001t0003g0087 a0001c0001t0007g0084	7	246	0.0285	-28	c.84+ others(45): Show c.84+35293_84+35320delCCATATATATATATATCCATATATATAT	SYNPR	ENSG00000163630.11	transcript	ENST00000478300.6	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
SYNPR_chr3_63273308_63621924	63336519	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01346.hp2 HG01515.hp1 others(11): Show HG00642.hp1 HG01346.hp2 HG01515.hp1 HG02027.hp2 HG02080.hp1 HG02083.hp2 HG02735.hp2 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03704.hp2 HG04115.hp1 NA18946.hp2 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 others(3): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0006t0006	a0001c0001t0004g0237 a0001c0001t0004g0243 a0001c0001t0004g0244 others(11): Show a0001c0001t0004g0237 a0001c0001t0004g0243 a0001c0001t0004g0244 a0001c0001t0004g0245 a0001c0001t0004g0246 a0001c0001t0006g0235 a0001c0001t0006g0236 a0001c0001t0006g0239 a0001c0001t0006g0240 a0001c0001t0006g0241 a0001c0001t0007g0068 a0001c0001t0009g0238 a0001c0001t0012g0242 a0001c0006t0006g0234	14	30	0.4667	-28	c.84+ others(45): Show c.84+57793_84+57820delAAAAAAAAAAAAAAAAAAAAAAAAAAAA	SYNPR	ENSG00000163630.11	transcript	ENST00000478300.6	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
SYNPR_chr3_63273308_63621924	63402028	CCCCTGCT others(21): Show CCCCTGCTGTTCATCCTTAATTTCATATA	C C	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0098	1	246	0.0041	-28	c.85- others(45): Show c.85-78802_85-78775delCCTGCTGTTCATCCTTAATTTCATATAC	SYNPR	ENSG00000163630.11	transcript	ENST00000478300.6	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
SYT1_chr12_78859774_79457008	78931218	AGAAAGAA others(21): Show AGAAAGAAAGAAAGAAAGAAAGAAGGAAG	A A	intron_variant intron_variant	MODIFIER	HG03225.hp1 NA19085.hp1 HG03225.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0009 a0001c0003t0005 a0001c0001t0009 a0001c0003t0005	a0001c0001t0009g0053 a0001c0003t0005g0009 a0001c0001t0009g0053 a0001c0003t0005g0009	2	60	0.0333	-28	c.-21 others(49): Show c.-216-46577_-216-46550delAGAAAGAAAGAAAGAAAGAAGGAA GGAA	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT1_chr12_78859774_79457008	78931323	GGGAGGGA others(21): Show GGGAGGGAGGGAGGGAAGGAAGGAAGGAA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0039	1	58	0.0172	-28	c.-21 others(49): Show c.-216-46472_-216-46445delGGGAGGGAGGGAAGGAAGGAAGGA AGGA	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT1_chr12_78859774_79457008	78931335	GGGAAGGA others(21): Show GGGAAGGAAGGAAGGAAGGAAGGAAGGAA	G G	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0007 a0001c0002t0007g0007	1	28	0.0357	-28	c.-21 others(49): Show c.-216-46429_-216-46402delAAGGAAGGAAGGAAGGAAGGAAGG AAGG	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT1_chr12_78859774_79457008	79224744	TTTATTTT others(21): Show TTTATTTTTTATTATTATTATTATTATTA	T T	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03195.hp1 HG02145.hp1 HG03195.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0013 a0001c0003t0002 a0001c0003t0013	a0001c0003t0002g0005 a0001c0003t0013g0044 a0001c0003t0002g0005 a0001c0003t0013g0044	2	22	0.0909	-28	c.166 others(45): Show c.166+7065_166+7092delTTTTATTATTATTATTATTATTATTATT	SYT1	ENSG00000067715.15	transcript	ENST00000261205.9	protein_coding	4/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
SYT2_chr1_202585596_202715454	202624540	ATGTGTGT others(21): Show ATGTGTGTGGTGTGTGTGGTGTTTAGTAG	A A	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0271 a0001c0002t0012g0271	1	274	0.0036	-28	c.-17 others(47): Show c.-17-18779_-17-18752delCTACTAAACACCACACACACCACACA CA	SYT2	ENSG00000143858.12	transcript	ENST00000367268.5	protein_coding	1/8			chr1	TogoVar
SYT2_chr1_202585596_202715454	202640734	CAGAGAGA others(21): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAG	C C	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0006 a0001c0004t0006	a0001c0004t0006g0045 a0001c0004t0006g0045	1	37	0.0270	-28	c.-17 others(47): Show c.-17-34973_-17-34946delCTCTCTCTCTCTCTCTCTCTCTCTCT CT	SYT2	ENSG00000143858.12	transcript	ENST00000367268.5	protein_coding	1/8			chr1	TogoVar
SYT2_chr1_202585596_202715454	202671935	CAAAAACA others(21): Show CAAAAACAATGCTTACTACATAATTAAAG	C C	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0059 a0001c0002t0059	a0001c0002t0059g0058 a0001c0002t0059g0058	1	272	0.0037	-28	c.-18 others(47): Show c.-18+38295_-18+38322delCTTTAATTATGTAGTAAGCATTGTTT TT	SYT2	ENSG00000143858.12	transcript	ENST00000367268.5	protein_coding	1/8			chr1	TogoVar
SYT3_chr19_50616977_50644881	50619383	CTCCTTCC others(21): Show CTCCTTCCTTCCTTCCTTCCTTCCTTCCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00408.hp2 HG00423.hp1 others(39): Show HG00099.hp1 HG00408.hp2 HG00423.hp1 HG00558.hp1 HG00609.hp1 HG00621.hp2 HG00733.hp1 HG00741.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp2 HG01175.hp1 HG01243.hp2 HG01261.hp2 HG01516.hp1 HG01993.hp1 HG02004.hp1 HG02080.hp2 HG02083.hp2 HG02735.hp1 HG02809.hp2 HG02895.hp1 HG02897.hp1 HG02970.hp2 HG03225.hp1 HG03490.hp1 HG03491.hp1 NA18747.hp2 NA18947.hp2 NA18948.hp2 NA18952.hp2 NA18967.hp1 NA18969.hp1 NA18970.hp2 NA18981.hp2 NA18989.hp1 NA19005.hp2 NA19054.hp2 NA19057.hp1 NA19060.hp1 NA19077.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0003t0003 a0001c0004t0002 a0001c0004t0009	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 others(16): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0041 a0001c0001t0001g0163 a0001c0001t0001g0170 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0002g0098 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0007g0181 a0001c0003t0003g0224 a0001c0004t0002g0083 a0001c0004t0009g0066	42	84	0.5000	-28	c.30 others(39): Show c.3074_*3101delAGGAAGGAAGGAAGGAAGGAAGGAAGGA	SYT3	ENSG00000213023.11	transcript	ENST00000600079.6	protein_coding		2593		chr19	TogoVar
SYT6_chr1_114084292_114158869	114129592	CTTTCTTT others(21): Show CTTTCTTTCTTTCTTTCTTTCTTTCCTTT	C C	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04199.hp2 HG04115.hp1 HG04199.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0024 a0001c0002t0003 a0001c0002t0024	a0001c0002t0003g0158 a0001c0002t0024g0157 a0001c0002t0003g0158 a0001c0002t0024g0157	2	424	0.0047	-28	c.107 others(47): Show c.1071+7875_1071+7902delAAAGGAAAGAAAGAAAGAAAGAAAGA AA	SYT6	ENSG00000134207.17	transcript	ENST00000610222.3	protein_coding	3/7			chr1	TogoVar
SYT9_chr11_7246904_7474043	7432562	AAAAAAAA others(21): Show AAAAAAAAAAAAAAAAAAAAAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	267	0.0037	-28	c.146 others(49): Show c.1467+11929_1467+11956delAAAAAAAAAAAAAAAAAAAATATA TATA	SYT9	ENSG00000170743.17	transcript	ENST00000318881.11	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
SYT9_chr11_7246904_7474043	7432572	AAAAAAAA others(21): Show AAAAAAAAAAAATATATATACATATATAT	A A	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03209.hp1 NA20129.hp2 HG03130.hp1 HG03209.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0003 a0001c0001t0004 a0001c0010t0007 a0001c0001t0003 a0001c0001t0004 a0001c0010t0007	a0001c0001t0003g0039 a0001c0001t0004g0040 a0001c0010t0007g0175 a0001c0001t0003g0039 a0001c0001t0004g0040 a0001c0010t0007g0175	3	266	0.0113	-28	c.146 others(49): Show c.1467+11939_1467+11966delAAAAAAAAAATATATATACATATA TATA	SYT9	ENSG00000170743.17	transcript	ENST00000318881.11	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
SYT9_chr11_7246904_7474043	7432576	AAAAAAAA others(21): Show AAAAAAAATATATATACATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01516.hp1 HG01978.hp1 HG00140.hp1 HG01516.hp1 HG01978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0104 a0001c0001t0001g0215 a0001c0001t0001g0021 a0001c0001t0001g0104 a0001c0001t0001g0215	3	252	0.0119	-28	c.146 others(49): Show c.1467+11943_1467+11970delAAAAAATATATATACATATATATA TATA	SYT9	ENSG00000170743.17	transcript	ENST00000318881.11	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
SYT9_chr11_7246904_7474043	7432578	AAAAAATA others(21): Show AAAAAATATATATACATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01952.hp2 HG02055.hp2 others(3): Show HG01081.hp2 HG01952.hp2 HG02055.hp2 HG02698.hp1 HG03490.hp1 NA20905.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0008 a0001c0001 a0004c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0012 a0004c0008t0001	a0001c0001t0001g0207 a0001c0001t0002g0166 a0001c0001t0002g0214 others(3): Show a0001c0001t0001g0207 a0001c0001t0002g0166 a0001c0001t0002g0214 a0001c0001t0008g0170 a0001c0001t0012g0168 a0004c0008t0001g0242	6	246	0.0244	-28	c.146 others(49): Show c.1467+11945_1467+11972delAAAATATATATACATATATATATA TATA	SYT9	ENSG00000170743.17	transcript	ENST00000318881.11	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
SYTL2_chr11_85689229_85816141	85789338	GTGTATAT others(21): Show GTGTATATATATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0141 a0002c0003t0002g0141	1	262	0.0038	-28	c.-39 others(49): Show c.-390+21588_-390+21615delTATATATATATATATATATATATA TACA	SYTL2	ENSG00000137501.18	transcript	ENST00000359152.10	protein_coding	1/19			chr11	TogoVar
SYTL5_chrX_38001553_38133816	38020408	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0168 a0001c0001t0004g0168	1	26	0.0385	-28	c.-35 others(49): Show c.-356-13111_-356-13084delATATATATATATATATATATATAT ATAT	SYTL5	ENSG00000147041.12	transcript	ENST00000297875.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chrX	TogoVar
TACC2_chr10_121984163_122259542	122176095	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTCTATATA	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0016 a0016	a0016c0084 a0016c0084	a0016c0084t0002 a0016c0084t0002	a0016c0084t0002g0125 a0016c0084t0002g0125	1	301	0.0033	-28	c.583 others(49): Show c.5835-18943_5835-18916delCTCTCTCTCTCTCTCTCTCTCTAT ATAT	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACC2_chr10_121984163_122259542	122176097	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTATATATA	C C	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03239.hp1 HG03927.hp1 HG02922.hp2 HG03239.hp1 HG03927.hp1	a0001 a0059 a0066 a0001 a0059 a0066	a0001c0001 a0059c0049 a0066c0097 a0001c0001 a0059c0049 a0066c0097	a0001c0001t0001 a0059c0049t0001 a0066c0097t0003 a0001c0001t0001 a0059c0049t0001 a0066c0097t0003	a0001c0001t0001g0080 a0059c0049t0001g0106 a0066c0097t0003g0081 a0001c0001t0001g0080 a0059c0049t0001g0106 a0066c0097t0003g0081	3	299	0.0100	-28	c.583 others(49): Show c.5835-18941_5835-18914delCTCTCTCTCTCTCTCTCTCTATAT ATAT	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACC2_chr10_121984163_122259542	122176099	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG02738.hp2 HG01070.hp1 HG02738.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0001 a0001c0001t0002 a0003c0003t0001	a0001c0001t0002g0174 a0003c0003t0001g0183 a0001c0001t0002g0174 a0003c0003t0001g0183	2	299	0.0067	-28	c.583 others(49): Show c.5835-18939_5835-18912delCTCTCTCTCTCTCTCTCTATATAT ATAT	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACC2_chr10_121984163_122259542	122176101	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02683.hp2 NA18986.hp2 HG02683.hp2 NA18986.hp2	a0002 a0084 a0002 a0084	a0002c0002 a0084c0078 a0002c0002 a0084c0078	a0002c0002t0003 a0084c0078t0001 a0002c0002t0003 a0084c0078t0001	a0002c0002t0003g0182 a0084c0078t0001g0046 a0002c0002t0003g0182 a0084c0078t0001g0046	2	296	0.0068	-28	c.583 others(49): Show c.5835-18937_5835-18910delCTCTCTCTCTCTCTCTATATATAT ATAT	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACC2_chr10_121984163_122259542	122176105	CTCTCTCT others(21): Show CTCTCTCTCTCTCTATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0009 a0009	a0009c0046 a0009c0046	a0009c0046t0002 a0009c0046t0002	a0009c0046t0002g0166 a0009c0046t0002g0166	1	297	0.0034	-28	c.583 others(49): Show c.5835-18933_5835-18906delCTCTCTCTCTCTATATATATATAT ATAT	TACC2	ENSG00000138162.19	transcript	ENST00000369005.6	protein_coding	7/22		INFO_REALIGN_3_PRIME	chr10	TogoVar
TACR1_chr2_75041463_75204520	75092631	ACTGAACC others(21): Show ACTGAACCGACTGTGTCCAGCCACCAAAG	A A	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG03491.hp2 HG00140.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0108 a0001c0001t0003g0081 a0001c0001t0001g0108 a0001c0001t0003g0081	2	280	0.0071	-28	c.584 others(47): Show c.584+27915_584+27942delCTTTGGTGGCTGGACACAGTCGGTTC AG	TACR1	ENSG00000115353.11	transcript	ENST00000305249.10	protein_coding	2/4			chr2	TogoVar
TACR2_chr10_69398903_69421918	69409876	TATATACA others(21): Show TATATACATATATACATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0009 a0009	a0009c0008 a0009c0008	a0009c0008t0008 a0009c0008t0008	a0009c0008t0008g0061 a0009c0008t0008g0061	1	380	0.0026	-28	c.588 others(43): Show c.588-829_588-802delGTATATATATATATGTATATATGTATAT	TACR2	ENSG00000075073.16	transcript	ENST00000373306.5	protein_coding	2/4			chr10	TogoVar
TAF15_chr17_35804484_35852242	35826866	TATTATTT others(21): Show TATTATTTTTATGTGTCATAACACATAAA	T T	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	319	0.0031	-28	c.605 others(45): Show c.605+2691_605+2718delCATAAAATTATTTTTATGTGTCATAACA	TAF15	ENSG00000270647.7	transcript	ENST00000605844.6	protein_coding	7/15		INFO_REALIGN_3_PRIME	chr17	TogoVar
TAF1_chrX_71361357_71471005	71456649	CTTTTTTT others(21): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	8	0.1250	-28	c.493 others(47): Show c.4939-1576_4939-1549delTTTTTTTTTTTTTTTTTTTTTTTTTT TT	TAF1	ENSG00000147133.17	transcript	ENST00000423759.6	protein_coding	34/37		INFO_REALIGN_3_PRIME	chrX	TogoVar
TAF3_chr10_7813505_8021631	7815566	ATATATAT others(21): Show ATATATATATATATATATATATTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01981.hp2 HG02056.hp2 HG03041.hp2 others(3): Show HG01981.hp2 HG02056.hp2 HG03041.hp2 HG04228.hp2 NA18956.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0012 a0001c0001 a0002c0002 a0002c0012	a0001c0001t0001 a0002c0002t0001 a0002c0012t0001 a0001c0001t0001 a0002c0002t0001 a0002c0012t0001	a0001c0001t0001g0206 a0002c0002t0001g0113 a0002c0002t0001g0114 others(3): Show a0001c0001t0001g0206 a0002c0002t0001g0113 a0002c0002t0001g0114 a0002c0002t0001g0174 a0002c0002t0001g0212 a0002c0012t0001g0184	6	200	0.0300	-28	c.-31 others(39): Show c.-3143_-3116delTATATATATATATATATATATTTTTTTT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		2938		chr10	TogoVar
TAF3_chr10_7813505_8021631	7815568	ATATATAT others(21): Show ATATATATATATATATATATTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0334 a0001c0001t0001g0334	1	248	0.0040	-28	c.-31 others(39): Show c.-3141_-3114delTATATATATATATATATATTTTTTTTTT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		2936		chr10	TogoVar
TAF3_chr10_7813505_8021631	7815570	ATATATAT others(21): Show ATATATATATATATATATTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02976.hp2 HG03209.hp1 others(1): Show HG02258.hp1 HG02976.hp2 HG03209.hp1 NA18906.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0004 a0002c0002 a0003c0003 a0001c0004 a0002c0002 a0003c0003	a0001c0004t0002 a0002c0002t0001 a0003c0003t0001 a0001c0004t0002 a0002c0002t0001 a0003c0003t0001	a0001c0004t0002g0229 a0002c0002t0001g0227 a0002c0002t0001g0259 others(1): Show a0001c0004t0002g0229 a0002c0002t0001g0227 a0002c0002t0001g0259 a0003c0003t0001g0298	4	293	0.0137	-28	c.-31 others(39): Show c.-3139_-3112delTATATATATATATATATTTTTTTTTTTT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding		2934		chr10	TogoVar
TAF3_chr10_7813505_8021631	7863694	TATATATA others(21): Show TATATATATATACACATATATATATACAC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01192.hp1 HG01516.hp1 others(6): Show HG00099.hp2 HG01192.hp1 HG01516.hp1 HG03239.hp1 HG04115.hp2 HG04184.hp2 HG04204.hp1 NA19000.hp1 NA19082.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0003c0006	a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 others(2): Show a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 a0003c0006t0001 a0003c0006t0002	a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0122 others(6): Show a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0122 a0002c0002t0001g0121 a0002c0002t0001g0124 a0002c0002t0001g0301 a0003c0003t0001g0123 a0003c0006t0001g0111 a0003c0006t0002g0112	9	123	0.0732	-28	c.409 others(47): Show c.409+39178_409+39205delTATATATATACACATATATATATACA CA	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
TAF3_chr10_7813505_8021631	7920304	GTGTGTGT others(21): Show GTGTGTGTGTGTGTGTGTGTGTGTGTGTA	G G	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0007 a0003c0006t0007	a0003c0006t0007g0187 a0003c0006t0007g0187	1	342	0.0029	-28	c.410 others(47): Show c.410-43598_410-43571delGTGTGTGTGTATGTGTGTGTGTGTGT GT	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
TAF3_chr10_7813505_8021631	8007562	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0196 a0003c0003t0001g0196	1	27	0.0370	-28	c.231 others(47): Show c.2316-1495_2316-1468delTATATATATATATATATATATATATA TA	TAF3	ENSG00000165632.9	transcript	ENST00000344293.6	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
TAF4B_chr18_26221445_26396685	26346845	GTATATAT others(21): Show GTATATATATATATGTGTATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0005 a0005	a0005c0013 a0005c0013	a0005c0013t0018 a0005c0013t0018	a0005c0013t0018g0188 a0005c0013t0018g0188	1	104	0.0096	-28	c.231 others(49): Show c.2317-10843_2317-10816delATATATATATATGTGTATATATAT ATAT	TAF4B	ENSG00000141384.13	transcript	ENST00000269142.10	protein_coding	13/14		INFO_REALIGN_3_PRIME	chr18	TogoVar
TAFA1_chr3_67999247_68550621	68120167	CTTTCTCT others(21): Show CTTTCTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0119 a0001c0001t0004g0119	1	151	0.0066	-28	c.118 others(49): Show c.118+113425_118+113452delTTCTCTTTCTTTCTTTCTTTCTTT CTTT	TAFA1	ENSG00000183662.12	transcript	ENST00000478136.6	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
TAFA1_chr3_67999247_68550621	68120171	CTCTTTCT others(21): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00733.hp2 HG02572.hp1 others(5): Show HG00642.hp2 HG00733.hp2 HG02572.hp1 HG02735.hp2 HG02738.hp1 NA18964.hp1 NA18968.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0010 a0001c0001t0001 a0001c0001t0005 a0001c0001t0010	a0001c0001t0001g0044 a0001c0001t0001g0080 a0001c0001t0001g0140 others(5): Show a0001c0001t0001g0044 a0001c0001t0001g0080 a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0151 a0001c0001t0005g0026 a0001c0001t0005g0027 a0001c0001t0010g0041	8	31	0.2581	-28	c.118 others(49): Show c.118+113493_118+113520delCTTTCTTTCTTTCTTTCTTTCTTT CTTT	TAFA1	ENSG00000183662.12	transcript	ENST00000478136.6	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
TAFA1_chr3_67999247_68550621	68123878	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0013 a0001c0001t0016g0013	1	11	0.0909	-28	c.118 others(49): Show c.118+117148_118+117175delAAAAAAAAAAAAAAAAAAAAAAAA AAAA	TAFA1	ENSG00000183662.12	transcript	ENST00000478136.6	protein_coding	2/4		INFO_REALIGN_3_PRIME	chr3	TogoVar
TAFA2_chr12_61703273_62197773	61725529	GTTGAATA others(21): Show GTTGAATAGGGTGTCCTTTCCCCACTTTA	G G	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0059 a0001c0001t0009g0059	1	220	0.0045	-28	c.385 others(47): Show c.385-15140_385-15113delTAAAGTGGGGAAAGGACACCCTATTC AA	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	4/4			chr12	TogoVar
TAFA2_chr12_61703273_62197773	62147318	GTATGTAT others(21): Show GTATGTATGTATATATATATATATATATA	G G	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01081.hp1 HG01169.hp1 others(13): Show HG00639.hp2 HG01081.hp1 HG01169.hp1 HG01256.hp1 HG01258.hp2 HG01891.hp2 HG03704.hp1 HG03710.hp2 HG04199.hp1 NA18747.hp2 NA18961.hp1 NA18968.hp2 NA18972.hp1 NA18977.hp1 NA19012.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0057 others(13): Show a0001c0001t0001g0054 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0120 a0001c0001t0001g0139 a0001c0001t0001g0140 a0001c0001t0001g0143 a0001c0001t0002g0039 a0001c0001t0002g0053 a0001c0001t0002g0121 a0001c0001t0002g0137 a0001c0001t0002g0180 a0001c0001t0003g0098 a0001c0001t0003g0153	16	114	0.1404	-28	c.-2+ others(45): Show c.-2+43913_-2+43940delTATATATATATATATATATACATACATA	TAFA2	ENSG00000198673.11	transcript	ENST00000416284.8	protein_coding	1/4			chr12	TogoVar

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