Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CST9L_chr20_23559732_23573484	23561040	TTTCCTTC others(21): Show TTTCCTTCTTTCCTTCTTTCCTTCTTTCC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	392	0.0026	-28	c.38 others(39): Show c.3880_*3907delGGAAAGAAGGAAAGAAGGAAAGAAGGAA	CST9L	ENSG00000101435.5	transcript	ENST00000376979.4	protein_coding		3691		chr20	TogoVar
CST9L_chr20_23559732_23573484	23561068	CTTCTTTC others(21): Show CTTCTTTCCTTCTTTCCTTCTTTCCTTCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	392	0.0026	-28	c.38 others(39): Show c.3852_*3879delAGAAGGAAAGAAGGAAAGAAGGAAAGAA	CST9L	ENSG00000101435.5	transcript	ENST00000376979.4	protein_coding		3663		chr20	TogoVar
CSTF3_chr11_33079584_33166480	33163876	AATATATA others(21): Show AATATATATATATATATATATATATATAT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0009 a0001c0001t0004g0009	1	360	0.0028	-28	c.-25 others(39): Show c.-2579_-2552delATATATATATATATATATATATATATAT	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2397		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163899	ATATATAT others(21): Show ATATATATATATATATATATATATATATT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG03130.hp1 HG03225.hp2 others(1): Show HG02723.hp2 HG03130.hp1 HG03225.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0208 a0001c0001t0001g0209 others(1): Show a0001c0001t0001g0204 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0220	4	360	0.0111	-28	c.-26 others(39): Show c.-2602_-2575delAATATATATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2420		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163901	ATATATAT others(21): Show ATATATATATATATATATATATATATTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG02886.hp1 HG02922.hp2 others(2): Show HG02630.hp2 HG02886.hp1 HG02922.hp2 HG03579.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0212 others(2): Show a0001c0001t0001g0197 a0001c0001t0001g0199 a0001c0001t0001g0212 a0001c0001t0001g0218 a0001c0001t0001g0219	5	360	0.0139	-28	c.-26 others(39): Show c.-2604_-2577delAAAATATATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2422		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163903	ATATATAT others(21): Show ATATATATATATATATATATATATTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp2 HG03486.hp1 HG03516.hp1 HG02486.hp2 HG03486.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0217 a0001c0001t0001g0226 a0001c0001t0001g0205 a0001c0001t0001g0217 a0001c0001t0001g0226	3	360	0.0083	-28	c.-26 others(39): Show c.-2606_-2579delAAAAAATATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2424		chr11	TogoVar
CSTF3_chr11_33079584_33166480	33163905	ATATATAT others(21): Show ATATATATATATATATATATATTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03516.hp2 HG03195.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0224 a0001c0001t0001g0225	2	360	0.0056	-28	c.-26 others(39): Show c.-2608_-2581delAAAAAAAATATATATATATATATATATA	CSTF3	ENSG00000176102.13	transcript	ENST00000323959.9	protein_coding		2426		chr11	TogoVar
CSTPP1_chr11_46931761_47167247	47124064	TATTGAGA others(21): Show TATTGAGATTAAAAGGTTTGTACATTTTC	T T	intron_variant intron_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	224	0.0045	-28	c.281 others(47): Show c.281-13579_281-13552delTTGAGATTAAAAGGTTTGTACATTTT CA	CSTPP1	ENSG00000149179.14	transcript	ENST00000278460.12	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr11	TogoVar
CT45A1_chrX_135708639_135728228	135715335	ATATATAT others(21): Show ATATATATATAATACTTACATATAATACT	A A	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0020 a0002c0002t0002g0020	1	57	0.0175	-28	c.-7+ others(43): Show c.-7+1663_-7+1690delCATATAATACTTATATATATAATACTTA	CT45A1	ENSG00000268940.6	transcript	ENST00000594565.6	protein_coding	1/4		INFO_REALIGN_3_PRIME	chrX	TogoVar
CTDP1_chr18_79674803_79759503	79741018	GGTCCCCC others(21): Show GGTCCCCCGTGCGGTTGATCTGTCCCTGA	G G	intron_variant intron_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0148 a0001c0001t0002g0148	1	378	0.0027	-28	c.274 others(47): Show c.2747+4503_2747+4530delCCGTGCGGTTGATCTGTCCCTGAGTC CC	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745246	ATGCGCGT others(21): Show ATGCGCGTTCTGTCCCTGCGTCCCTCCCG	A A	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0037 a0001c0037	a0001c0037t0001 a0001c0037t0001	a0001c0037t0001g0079 a0001c0037t0001g0079	1	378	0.0027	-28	c.274 others(47): Show c.2748-8337_2748-8310delCCCTGCGTCCCTCCCGTGCGCGTTCT GT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745315	CCCTGCGT others(21): Show CCCTGCGTCCCTCCCGTGCGCGTTCTGTG	C C	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01934.hp1 HG02109.hp1 others(3): Show HG01255.hp2 HG01934.hp1 HG02109.hp1 HG02615.hp2 HG02886.hp2 NA20300.hp2	a0001 a0010 a0011 a0001 a0010 a0011	a0001c0001 a0001c0007 a0001c0018 others(2): Show a0001c0001 a0001c0007 a0001c0018 a0010c0030 a0011c0032	a0001c0001t0001 a0001c0007t0003 a0001c0018t0001 others(2): Show a0001c0001t0001 a0001c0007t0003 a0001c0018t0001 a0010c0030t0001 a0011c0032t0001	a0001c0001t0001g0084 a0001c0007t0003g0352 a0001c0018t0001g0085 others(3): Show a0001c0001t0001g0084 a0001c0007t0003g0352 a0001c0018t0001g0085 a0001c0018t0001g0086 a0010c0030t0001g0082 a0011c0032t0001g0083	6	378	0.0159	-28	c.274 others(47): Show c.2748-8334_2748-8307delTGCGTCCCTCCCGTGCGCGTTCTGTG CC	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745318	TGCGTCCC others(21): Show TGCGTCCCTCCCGTGCGCGTTCTGTGCCC	T T	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02040.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0001 a0004c0004t0001	a0004c0004t0001g0308 a0004c0004t0001g0308	1	378	0.0027	-28	c.274 others(47): Show c.2748-8281_2748-8254delGCCCGCGTCCCTCCCGTGCGCGTTCT GT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745371	GCCCGCGT others(21): Show GCCCGCGTCCCTCCCGTGCGCGTTCTGTC	G G	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01361.hp1 HG02258.hp1 others(2): Show HG01106.hp2 HG01361.hp1 HG02258.hp1 HG02809.hp1 HG02896.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0001c0042 others(2): Show a0001c0001 a0001c0003 a0001c0042 a0002c0006 a0005c0015	a0001c0001t0002 a0001c0003t0001 a0001c0042t0001 others(2): Show a0001c0001t0002 a0001c0003t0001 a0001c0042t0001 a0002c0006t0001 a0005c0015t0005	a0001c0001t0002g0187 a0001c0003t0001g0073 a0001c0042t0001g0095 others(2): Show a0001c0001t0002g0187 a0001c0003t0001g0073 a0001c0042t0001g0095 a0002c0006t0001g0225 a0005c0015t0005g0366	5	378	0.0132	-28	c.274 others(47): Show c.2748-8149_2748-8122delCGTTCTGTCCCCGCGTCCCTCCCGTG CG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745503	CGTTCTGT others(21): Show CGTTCTGTCCCCGCGTCCCTCCCGTGCGG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00408.hp2 others(56): Show HG00099.hp2 HG00140.hp2 HG00408.hp2 HG00438.hp1 HG00558.hp2 HG00621.hp2 HG00673.hp2 HG00733.hp2 HG00735.hp1 HG01070.hp2 HG01099.hp1 HG01192.hp2 HG01943.hp1 HG01975.hp2 HG02015.hp2 HG02055.hp1 HG02071.hp2 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02615.hp1 HG02738.hp2 HG02922.hp1 HG03017.hp1 HG03225.hp2 HG03471.hp2 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp2 HG03669.hp1 HG03927.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp2 NA18939.hp2 NA18940.hp1 NA18942.hp1 NA18943.hp2 NA18944.hp1 NA18948.hp2 NA18949.hp2 NA18951.hp2 NA18960.hp1 NA18972.hp2 NA18989.hp2 NA18990.hp1 NA18993.hp2 NA18994.hp2 NA18995.hp2 NA19056.hp2 NA19064.hp1 NA19066.hp1 NA19079.hp2 NA19081.hp1 NA19087.hp2 NA19089.hp1 NA20129.hp2	a0001 a0002 a0004 others(5): Show a0001 a0002 a0004 a0005 a0006 a0007 a0016 a0018	a0001c0001 a0001c0017 a0001c0021 others(7): Show a0001c0001 a0001c0017 a0001c0021 a0002c0002 a0004c0004 a0005c0024 a0006c0010 a0007c0019 a0016c0039 a0018c0038	a0001c0001t0002 a0001c0017t0003 a0001c0021t0007 others(7): Show a0001c0001t0002 a0001c0017t0003 a0001c0021t0007 a0002c0002t0001 a0004c0004t0001 a0005c0024t0001 a0006c0010t0001 a0007c0019t0001 a0016c0039t0001 a0018c0038t0001	a0001c0001t0002g0156 a0001c0001t0002g0160 a0001c0001t0002g0183 others(56): Show a0001c0001t0002g0156 a0001c0001t0002g0160 a0001c0001t0002g0183 a0001c0017t0003g0015 a0001c0021t0007g0341 a0002c0002t0001g0208 a0002c0002t0001g0215 a0002c0002t0001g0217 a0002c0002t0001g0219 a0002c0002t0001g0239 a0002c0002t0001g0241 a0002c0002t0001g0243 a0002c0002t0001g0246 a0002c0002t0001g0248 a0002c0002t0001g0253 a0002c0002t0001g0255 a0002c0002t0001g0258 a0002c0002t0001g0262 a0002c0002t0001g0264 a0002c0002t0001g0266 a0002c0002t0001g0268 a0002c0002t0001g0269 a0002c0002t0001g0270 a0002c0002t0001g0271 a0002c0002t0001g0272 a0002c0002t0001g0273 a0002c0002t0001g0274 a0002c0002t0001g0275 a0002c0002t0001g0276 a0002c0002t0001g0277 a0002c0002t0001g0278 a0002c0002t0001g0279 a0002c0002t0001g0280 a0002c0002t0001g0281 a0002c0002t0001g0282 a0002c0002t0001g0286 a0002c0002t0001g0287 a0002c0002t0001g0288 a0002c0002t0001g0289 a0002c0002t0001g0291 a0002c0002t0001g0292 a0002c0002t0001g0293 a0002c0002t0001g0294 a0002c0002t0001g0296 a0002c0002t0001g0297 a0002c0002t0001g0298 a0002c0002t0001g0302 a0002c0002t0001g0303 a0002c0002t0001g0304 a0004c0004t0001g0312 a0005c0024t0001g0371 a0006c0010t0001g0254 a0006c0010t0001g0260 a0006c0010t0001g0263 a0006c0010t0001g0265 a0007c0019t0001g0300 a0007c0019t0001g0301 a0016c0039t0001g0245 a0018c0038t0001g0285	59	378	0.1561	-28	c.274 others(47): Show c.2748-8121_2748-8094delGGTTCTGTCCCCGCGTCCCTCCCGTG CG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745567	CCCCGCGT others(21): Show CCCCGCGTCCCTCCCGTGCGCGTTCTGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp2 HG00438.hp1 others(57): Show HG00099.hp2 HG00408.hp2 HG00438.hp1 HG00558.hp2 HG00621.hp2 HG00673.hp2 HG00733.hp2 HG00735.hp1 HG00741.hp2 HG01069.hp2 HG01070.hp2 HG01099.hp1 HG01167.hp2 HG01192.hp2 HG01943.hp1 HG01975.hp2 HG02015.hp2 HG02055.hp1 HG02071.hp2 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02698.hp2 HG02738.hp2 HG02922.hp1 HG03017.hp1 HG03130.hp1 HG03195.hp1 HG03471.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp2 HG03669.hp1 HG03927.hp2 HG04199.hp1 NA18612.hp2 NA18747.hp2 NA18939.hp2 NA18940.hp1 NA18942.hp1 NA18944.hp1 NA18948.hp2 NA18949.hp2 NA18951.hp2 NA18960.hp1 NA18964.hp1 NA18972.hp2 NA18989.hp2 NA18990.hp1 NA18993.hp2 NA18994.hp2 NA18995.hp2 NA19056.hp2 NA19064.hp1 NA19066.hp1 NA19079.hp2 NA19081.hp1 NA19087.hp2 NA19089.hp1	a0001 a0002 a0006 others(3): Show a0001 a0002 a0006 a0007 a0016 a0018	a0001c0001 a0001c0008 a0002c0002 others(4): Show a0001c0001 a0001c0008 a0002c0002 a0006c0010 a0007c0019 a0016c0039 a0018c0038	a0001c0001t0002 a0001c0001t0017 a0001c0008t0001 others(5): Show a0001c0001t0002 a0001c0001t0017 a0001c0008t0001 a0002c0002t0001 a0006c0010t0001 a0007c0019t0001 a0016c0039t0001 a0018c0038t0001	a0001c0001t0002g0156 a0001c0001t0002g0160 a0001c0001t0002g0183 others(57): Show a0001c0001t0002g0156 a0001c0001t0002g0160 a0001c0001t0002g0183 a0001c0001t0017g0207 a0001c0008t0001g0205 a0002c0002t0001g0209 a0002c0002t0001g0210 a0002c0002t0001g0213 a0002c0002t0001g0215 a0002c0002t0001g0217 a0002c0002t0001g0219 a0002c0002t0001g0239 a0002c0002t0001g0241 a0002c0002t0001g0243 a0002c0002t0001g0246 a0002c0002t0001g0248 a0002c0002t0001g0249 a0002c0002t0001g0253 a0002c0002t0001g0255 a0002c0002t0001g0258 a0002c0002t0001g0262 a0002c0002t0001g0264 a0002c0002t0001g0266 a0002c0002t0001g0268 a0002c0002t0001g0269 a0002c0002t0001g0270 a0002c0002t0001g0271 a0002c0002t0001g0272 a0002c0002t0001g0273 a0002c0002t0001g0274 a0002c0002t0001g0275 a0002c0002t0001g0276 a0002c0002t0001g0277 a0002c0002t0001g0278 a0002c0002t0001g0279 a0002c0002t0001g0280 a0002c0002t0001g0281 a0002c0002t0001g0282 a0002c0002t0001g0286 a0002c0002t0001g0287 a0002c0002t0001g0288 a0002c0002t0001g0289 a0002c0002t0001g0292 a0002c0002t0001g0293 a0002c0002t0001g0294 a0002c0002t0001g0296 a0002c0002t0001g0297 a0002c0002t0001g0298 a0002c0002t0001g0302 a0002c0002t0001g0303 a0002c0002t0001g0304 a0002c0002t0001g0329 a0006c0010t0001g0254 a0006c0010t0001g0260 a0006c0010t0001g0263 a0006c0010t0001g0265 a0007c0019t0001g0300 a0007c0019t0001g0301 a0016c0039t0001g0245 a0018c0038t0001g0285	60	378	0.1587	-28	c.274 others(47): Show c.2748-7917_2748-7890delGCCCGCGTCCCTCCCGTGCGCGTTCT GT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745839	CGTTCTGT others(21): Show CGTTCTGTCCCCGCGTCCCTCCCGTGCGG	C C	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01517.hp1 HG01981.hp2 others(9): Show HG01516.hp1 HG01517.hp1 HG01981.hp2 HG02071.hp1 HG02080.hp1 HG02647.hp1 HG02965.hp2 HG03225.hp2 NA18612.hp1 NA18969.hp2 NA18977.hp2 NA19058.hp1	a0002 a0004 a0005 others(1): Show a0002 a0004 a0005 a0006	a0002c0002 a0004c0004 a0005c0015 others(2): Show a0002c0002 a0004c0004 a0005c0015 a0005c0024 a0006c0010	a0002c0002t0001 a0004c0004t0001 a0005c0015t0005 others(2): Show a0002c0002t0001 a0004c0004t0001 a0005c0015t0005 a0005c0024t0001 a0006c0010t0001	a0002c0002t0001g0211 a0002c0002t0001g0212 a0002c0002t0001g0214 others(9): Show a0002c0002t0001g0211 a0002c0002t0001g0212 a0002c0002t0001g0214 a0002c0002t0001g0242 a0002c0002t0001g0257 a0002c0002t0001g0261 a0002c0002t0001g0267 a0004c0004t0001g0322 a0004c0004t0001g0323 a0005c0015t0005g0369 a0005c0024t0001g0371 a0006c0010t0001g0259	12	378	0.0318	-28	c.274 others(47): Show c.2748-7785_2748-7758delGGTTCTGTCCCCGCGTCCCTCCCGTG CG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745867	GGTTCTGT others(21): Show GGTTCTGTCCCCGCGTCCCTCCCGTGCGC	G G	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0001 a0001c0018t0001	a0001c0018t0001g0086 a0001c0018t0001g0086	1	378	0.0027	-28	c.274 others(47): Show c.2748-7749_2748-7722delCCCCGCGTCCCTCCCGTGCGCGTTCT GT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79745903	CCCCGCGT others(21): Show CCCCGCGTCCCTCCCGTGCGCGTTCTGTG	C C	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp2 HG00423.hp1 others(97): Show HG00099.hp1 HG00323.hp2 HG00423.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp2 HG00639.hp1 HG00642.hp1 HG00642.hp2 HG01069.hp1 HG01071.hp2 HG01099.hp2 HG01167.hp2 HG01168.hp1 HG01261.hp1 HG01261.hp2 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01517.hp2 HG01934.hp1 HG01934.hp2 HG01981.hp1 HG01993.hp1 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02027.hp2 HG02040.hp1 HG02040.hp2 HG02074.hp1 HG02083.hp1 HG02129.hp2 HG02132.hp2 HG02148.hp2 HG02165.hp1 HG02523.hp2 HG02735.hp1 HG02735.hp2 HG02738.hp1 HG03017.hp2 HG03239.hp2 HG03491.hp2 HG03492.hp1 HG03492.hp2 HG03688.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03831.hp2 HG03834.hp2 HG03927.hp1 HG03942.hp2 HG04184.hp2 HG04204.hp2 NA18747.hp1 NA18947.hp1 NA18947.hp2 NA18949.hp1 NA18952.hp1 NA18954.hp2 NA18960.hp2 NA18963.hp1 NA18964.hp2 NA18965.hp1 NA18965.hp2 NA18968.hp1 NA18969.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18980.hp1 NA18980.hp2 NA18986.hp2 NA18987.hp2 NA18988.hp1 NA18989.hp1 NA18993.hp1 NA18995.hp1 NA18999.hp1 NA19004.hp2 NA19007.hp1 NA19010.hp1 NA19012.hp2 NA19056.hp1 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19065.hp1 NA19065.hp2 NA19067.hp2 NA19070.hp2 NA19077.hp2 NA19080.hp1 NA19081.hp2 NA19084.hp1 NA19087.hp1 NA19091.hp1 NA19091.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0017	a0001c0001 a0001c0003 a0001c0007 others(7): Show a0001c0001 a0001c0003 a0001c0007 a0001c0029 a0002c0002 a0003c0005 a0003c0009 a0003c0012 a0004c0004 a0017c0040	a0001c0001t0002 a0001c0001t0017 a0001c0003t0001 others(8): Show a0001c0001t0002 a0001c0001t0017 a0001c0003t0001 a0001c0007t0003 a0001c0029t0001 a0002c0002t0001 a0003c0005t0002 a0003c0009t0002 a0003c0012t0002 a0004c0004t0001 a0017c0040t0001	a0001c0001t0002g0001 a0001c0001t0002g0016 a0001c0001t0002g0017 others(96): Show a0001c0001t0002g0001 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0018 a0001c0001t0002g0022 a0001c0001t0002g0093 a0001c0001t0002g0094 a0001c0001t0002g0135 a0001c0001t0002g0136 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0139 a0001c0001t0002g0142 a0001c0001t0002g0149 a0001c0001t0002g0153 a0001c0001t0002g0154 a0001c0001t0002g0155 a0001c0001t0002g0157 a0001c0001t0002g0158 a0001c0001t0002g0159 a0001c0001t0002g0161 a0001c0001t0002g0162 a0001c0001t0002g0163 a0001c0001t0002g0165 a0001c0001t0002g0167 a0001c0001t0002g0168 a0001c0001t0002g0170 a0001c0001t0002g0171 a0001c0001t0002g0172 a0001c0001t0002g0173 a0001c0001t0002g0174 a0001c0001t0002g0175 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0178 a0001c0001t0002g0179 a0001c0001t0002g0180 a0001c0001t0002g0181 a0001c0001t0002g0182 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0188 a0001c0001t0002g0189 a0001c0001t0002g0190 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0206 a0001c0001t0002g0339 a0001c0001t0017g0207 a0001c0003t0001g0030 a0001c0003t0001g0039 a0001c0003t0001g0045 a0001c0003t0001g0048 a0001c0003t0001g0049 a0001c0003t0001g0050 a0001c0003t0001g0052 a0001c0003t0001g0053 a0001c0003t0001g0056 a0001c0003t0001g0063 a0001c0003t0001g0072 a0001c0003t0001g0340 a0001c0007t0003g0352 a0001c0029t0001g0029 a0002c0002t0001g0090 a0002c0002t0001g0283 a0002c0002t0001g0284 a0003c0005t0002g0005 a0003c0005t0002g0006 a0003c0005t0002g0007 a0003c0005t0002g0008 a0003c0005t0002g0099 a0003c0005t0002g0102 a0003c0005t0002g0104 a0003c0005t0002g0110 a0003c0005t0002g0111 a0003c0005t0002g0112 a0003c0005t0002g0113 a0003c0005t0002g0114 a0003c0005t0002g0118 a0003c0005t0002g0119 a0003c0005t0002g0120 a0003c0005t0002g0121 a0003c0005t0002g0125 a0003c0005t0002g0126 a0003c0005t0002g0133 a0003c0005t0002g0134 a0003c0009t0002g0108 a0003c0009t0002g0109 a0003c0009t0002g0115 a0003c0009t0002g0116 a0003c0009t0002g0117 a0003c0009t0002g0124 a0003c0012t0002g0105 a0003c0012t0002g0106 a0003c0012t0002g0107 a0004c0004t0001g0308 a0004c0004t0001g0320 a0017c0040t0001g0256	100	378	0.2646	-28	c.274 others(47): Show c.2748-7581_2748-7554delGCCCGCGTCCCTCCCGTGCGCGTTCT GT	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79746071	GCCCGCGT others(21): Show GCCCGCGTCCCTCCCGTGCGCGTTCTGTC	G G	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG03453.hp2 HG03491.hp1 others(9): Show HG02280.hp2 HG03453.hp2 HG03491.hp1 HG03579.hp2 HG03669.hp2 NA18943.hp2 NA18955.hp1 NA18961.hp1 NA19030.hp1 NA19043.hp2 NA20300.hp1 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0014 a0001c0018 others(2): Show a0001c0001 a0001c0014 a0001c0018 a0001c0041 a0004c0004	a0001c0001t0002 a0001c0001t0008 a0001c0014t0001 others(3): Show a0001c0001t0002 a0001c0001t0008 a0001c0014t0001 a0001c0018t0001 a0001c0041t0013 a0004c0004t0001	a0001c0001t0002g0019 a0001c0001t0002g0145 a0001c0001t0002g0166 others(9): Show a0001c0001t0002g0019 a0001c0001t0002g0145 a0001c0001t0002g0166 a0001c0001t0002g0169 a0001c0001t0002g0194 a0001c0001t0002g0195 a0001c0001t0008g0098 a0001c0001t0008g0101 a0001c0014t0001g0078 a0001c0018t0001g0086 a0001c0041t0013g0096 a0004c0004t0001g0312	12	378	0.0318	-28	c.274 others(47): Show c.2748-7477_2748-7450delCGTTCTGTCCCCGCGTCCCTCCCGTG CG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79746175	CGTTCTGT others(21): Show CGTTCTGTCCCCGCGTCCCTCCCGTGCGG	C C	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02040.hp1 HG01952.hp2 HG02040.hp1	a0001 a0004 a0001 a0004	a0001c0008 a0004c0004 a0001c0008 a0004c0004	a0001c0008t0001 a0004c0004t0001 a0001c0008t0001 a0004c0004t0001	a0001c0008t0001g0199 a0004c0004t0001g0308 a0001c0008t0001g0199 a0004c0004t0001g0308	2	378	0.0053	-28	c.274 others(47): Show c.2748-7449_2748-7422delGGTTCTGTCCCCGCGTCCCTCCCGTG CG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79746210	TCCCCGCG others(21): Show TCCCCGCGTCCCTCCCGTGCGCGTTCTGA	T T	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0215 a0002c0002t0001g0215	1	378	0.0027	-28	c.274 others(47): Show c.2748-7414_2748-7387delACCCCGCGTCCCTCCCGTGCGCGTTC TG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79746298	TGCGTCCC others(21): Show TGCGTCCCTCCCGTGCGCGTTCTGTCCCC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00280.hp1 others(100): Show HG00099.hp2 HG00140.hp2 HG00280.hp1 HG00408.hp2 HG00438.hp1 HG00558.hp2 HG00621.hp2 HG00673.hp2 HG00733.hp2 HG00741.hp2 HG01069.hp2 HG01070.hp2 HG01099.hp1 HG01123.hp1 HG01168.hp2 HG01169.hp2 HG01192.hp1 HG01192.hp2 HG01433.hp1 HG01433.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp1 HG01891.hp1 HG01934.hp1 HG01943.hp1 HG01975.hp2 HG01981.hp2 HG02015.hp2 HG02055.hp1 HG02071.hp1 HG02071.hp2 HG02165.hp2 HG02273.hp1 HG02273.hp2 HG02293.hp1 HG02300.hp1 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02630.hp2 HG02647.hp1 HG02698.hp2 HG02717.hp1 HG02738.hp2 HG02809.hp2 HG02886.hp1 HG02895.hp2 HG02897.hp1 HG02922.hp1 HG02965.hp2 HG03017.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp2 HG03471.hp2 HG03486.hp1 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03669.hp1 HG03927.hp2 HG04184.hp1 HG04199.hp1 NA18612.hp1 NA18612.hp2 NA18747.hp2 NA18939.hp2 NA18940.hp1 NA18942.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp2 NA18949.hp2 NA18950.hp1 NA18951.hp2 NA18960.hp1 NA18962.hp1 NA18969.hp2 NA18972.hp2 NA18977.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18989.hp2 NA18990.hp1 NA18993.hp2 NA18994.hp2 NA18995.hp2 NA19056.hp2 NA19058.hp1 NA19064.hp1 NA19066.hp1 NA19067.hp1 NA19077.hp1 NA19079.hp2 NA19081.hp1 NA19084.hp2 NA19087.hp2 NA19089.hp1 NA20905.hp1	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0009 a0013 a0016 a0018	a0001c0001 a0001c0003 a0001c0007 others(14): Show a0001c0001 a0001c0003 a0001c0007 a0001c0008 a0001c0016 a0001c0017 a0002c0002 a0003c0005 a0004c0004 a0005c0015 a0005c0024 a0006c0010 a0007c0019 a0009c0026 a0013c0027 a0016c0039 a0018c0038	a0001c0001t0002 a0001c0003t0001 a0001c0003t0002 others(17): Show a0001c0001t0002 a0001c0003t0001 a0001c0003t0002 a0001c0003t0014 a0001c0007t0003 a0001c0008t0001 a0001c0016t0001 a0001c0017t0003 a0002c0002t0001 a0002c0002t0016 a0003c0005t0002 a0004c0004t0001 a0005c0015t0005 a0005c0024t0001 a0006c0010t0001 a0007c0019t0001 a0009c0026t0001 a0013c0027t0001 a0016c0039t0001 a0018c0038t0001	a0001c0001t0002g0131 a0001c0001t0002g0132 a0001c0001t0002g0156 others(100): Show a0001c0001t0002g0131 a0001c0001t0002g0132 a0001c0001t0002g0156 a0001c0001t0002g0160 a0001c0001t0002g0183 a0001c0003t0001g0026 a0001c0003t0001g0027 a0001c0003t0001g0031 a0001c0003t0001g0032 a0001c0003t0001g0034 a0001c0003t0001g0036 a0001c0003t0001g0038 a0001c0003t0001g0066 a0001c0003t0001g0075 a0001c0003t0001g0076 a0001c0003t0001g0077 a0001c0003t0001g0080 a0001c0003t0001g0081 a0001c0003t0001g0372 a0001c0003t0001g0373 a0001c0003t0001g0374 a0001c0003t0002g0100 a0001c0003t0014g0059 a0001c0007t0003g0352 a0001c0008t0001g0201 a0001c0016t0001g0057 a0001c0017t0003g0015 a0002c0002t0001g0208 a0002c0002t0001g0209 a0002c0002t0001g0210 a0002c0002t0001g0211 a0002c0002t0001g0212 a0002c0002t0001g0213 a0002c0002t0001g0214 a0002c0002t0001g0217 a0002c0002t0001g0219 a0002c0002t0001g0239 a0002c0002t0001g0240 a0002c0002t0001g0241 a0002c0002t0001g0242 a0002c0002t0001g0243 a0002c0002t0001g0244 a0002c0002t0001g0246 a0002c0002t0001g0247 a0002c0002t0001g0248 a0002c0002t0001g0250 a0002c0002t0001g0251 a0002c0002t0001g0252 a0002c0002t0001g0253 a0002c0002t0001g0255 a0002c0002t0001g0257 a0002c0002t0001g0258 a0002c0002t0001g0262 a0002c0002t0001g0264 a0002c0002t0001g0266 a0002c0002t0001g0267 a0002c0002t0001g0268 a0002c0002t0001g0269 a0002c0002t0001g0270 a0002c0002t0001g0271 a0002c0002t0001g0272 a0002c0002t0001g0273 a0002c0002t0001g0274 a0002c0002t0001g0275 a0002c0002t0001g0276 a0002c0002t0001g0277 a0002c0002t0001g0278 a0002c0002t0001g0279 a0002c0002t0001g0280 a0002c0002t0001g0281 a0002c0002t0001g0282 a0002c0002t0001g0286 a0002c0002t0001g0287 a0002c0002t0001g0288 a0002c0002t0001g0289 a0002c0002t0001g0292 a0002c0002t0001g0293 a0002c0002t0001g0294 a0002c0002t0001g0296 a0002c0002t0001g0297 a0002c0002t0001g0298 a0002c0002t0001g0302 a0002c0002t0001g0303 a0002c0002t0001g0304 a0002c0002t0001g0329 a0002c0002t0016g0299 a0003c0005t0002g0129 a0003c0005t0002g0130 a0004c0004t0001g0322 a0004c0004t0001g0323 a0005c0015t0005g0369 a0005c0024t0001g0371 a0006c0010t0001g0254 a0006c0010t0001g0259 a0006c0010t0001g0260 a0006c0010t0001g0263 a0006c0010t0001g0265 a0007c0019t0001g0300 a0007c0019t0001g0301 a0009c0026t0001g0060 a0013c0027t0001g0037 a0016c0039t0001g0245 a0018c0038t0001g0285	103	378	0.2725	-28	c.274 others(47): Show c.2748-7330_2748-7303delTCCCCGCGTCCCTCCCGTGCGCGTTC TG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTDP1_chr18_79674803_79759503	79746338	GTGCGCGT others(21): Show GTGCGCGTTCTGACCCTGCGTCCCTCCCA	G G	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0097 a0001c0001t0008g0097	1	378	0.0027	-28	c.274 others(47): Show c.2748-7302_2748-7275delACCCTGCGTCCCTCCCATGCGCGTTC TG	CTDP1	ENSG00000060069.18	transcript	ENST00000613122.5	protein_coding	12/12		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTIF_chr18_48534031_48868217	48669793	TTATATAT others(21): Show TTATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG03098.hp1 HG03579.hp1 HG02896.hp1 HG03098.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0039 a0001c0001t0047 a0001c0001t0008 a0001c0001t0039 a0001c0001t0047	a0001c0001t0008g0007 a0001c0001t0039g0043 a0001c0001t0047g0031 a0001c0001t0008g0007 a0001c0001t0039g0043 a0001c0001t0047g0031	3	144	0.0208	-28	c.432 others(43): Show c.432-855_432-828delTATATATATATATATATATATATATATA	CTIF	ENSG00000134030.14	transcript	ENST00000256413.8	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr18	TogoVar
CTLA4_chr2_203862771_203878965	203873327	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01109.hp2 HG02615.hp1 HG02896.hp2 others(3): Show HG01109.hp2 HG02615.hp1 HG02896.hp2 HG03540.hp1 NA18984.hp2 NA19240.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0002 a0001c0003 a0002c0002	a0001c0003t0017 a0002c0002t0017 a0001c0003t0017 a0002c0002t0017	a0001c0003t0017g0002 a0002c0002t0017g0001 a0001c0003t0017g0002 a0002c0002t0017g0001	6	420	0.0143	-28	c.54 others(37): Show c.544_*571delATATATATATATATATATATATATATAT	CTLA4	ENSG00000163599.18	transcript	ENST00000648405.2	protein_coding	4/4	544	INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79508955	GTATATAT others(21): Show GTATATATATATATATATATATATATATA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03225.hp1 HG03139.hp1 HG03225.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0002c0008 a0001c0002 a0002c0008	a0001c0002t0001 a0002c0008t0001 a0001c0002t0001 a0002c0008t0001	a0001c0002t0001g0004 a0002c0008t0001g0002 a0001c0002t0001g0004 a0002c0008t0001g0002	2	68	0.0294	-28	c.-42 others(39): Show c.-4257_-4230delTATATATATATATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding		4095		chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79521107	GATATATA others(21): Show GATATATATATATATATATATATATATAT	G G	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0005 a0001c0003t0001g0005	1	68	0.0147	-28	c.-6+ others(43): Show c.-6+7934_-6+7961delTATATATATATATATATATATATATATA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	1/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930274	GAAAGAGA others(21): Show GAAAGAGAGAGAGAGAGAAAGAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG03486.hp1 HG02148.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0010 a0001c0001t0002g0041 a0001c0001t0001g0010 a0001c0001t0002g0041	2	68	0.0294	-28	c.105 others(49): Show c.1056+20479_1056+20506delAAGAGAGAGAGAGAGAAAGAGAAA GAAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79930294	GAGAAAGA others(21): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAA	G G	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03516.hp2 HG03209.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0003t0001 a0001c0002t0002 a0001c0003t0001	a0001c0002t0002g0025 a0001c0003t0001g0005 a0001c0002t0002g0025 a0001c0003t0001g0005	2	68	0.0294	-28	c.105 others(49): Show c.1056+20534_1056+20561delAGAAAGAAAGAAAGAAAGAAAGAA AGAA	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	79982192	CTATATAT others(21): Show CTATATATATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01106.hp2 HG02148.hp1 others(2): Show HG00735.hp2 HG01106.hp2 HG02148.hp1 HG02258.hp2 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0016 a0001c0001 a0001c0002 a0001c0016	a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0002 a0001c0016t0001	a0001c0001t0001g0010 a0001c0002t0001g0037 a0001c0002t0001g0047 others(2): Show a0001c0001t0001g0010 a0001c0002t0001g0037 a0001c0002t0001g0047 a0001c0002t0002g0015 a0001c0016t0001g0045	5	68	0.0735	-28	c.105 others(49): Show c.1056+72417_1056+72444delATATATATATATATATATATATAT ATAT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043073	TTCTTTCT others(21): Show TTCTTTCTTTCTTTCTTTCTTTCTCTCTC	T T	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03927.hp2 HG03471.hp2 HG03927.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0006 a0001c0003 a0002c0006	a0001c0003t0001 a0002c0006t0001 a0001c0003t0001 a0002c0006t0001	a0001c0003t0001g0018 a0002c0006t0001g0060 a0001c0003t0001g0018 a0002c0006t0001g0060	2	68	0.0294	-28	c.105 others(51): Show c.1056+133280_1056+133307delTTCTTTCTTTCTTTCTTTCTCT CTCTCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043115	CTTTCTCC others(21): Show CTTTCTCCTTCCTTCCTTCCTTCCTTCCT	C C	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0025 a0001c0002t0002g0025	1	68	0.0147	-28	c.105 others(51): Show c.1056+133320_1056+133347delTTCTCCTTCCTTCCTTCCTTCC TTCCTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043119	CTCCTTCC others(21): Show CTCCTTCCTTCCTTCCTTCCTTCCTTCCT	C C	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	68	0.0147	-28	c.105 others(51): Show c.1056+133360_1056+133387delCCTTCCTTCCTTCCTTCCTTCC TTCCTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80043157	CCTTCCTT others(21): Show CCTTCCTTCCTTCCTTCCTTCCTTCCTTT	C C	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01106.hp2 HG02148.hp1 others(1): Show HG00735.hp1 HG01106.hp2 HG02148.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0010 a0001c0001t0001g0031 a0001c0002t0001g0047 others(1): Show a0001c0001t0001g0010 a0001c0001t0001g0031 a0001c0002t0001g0047 a0001c0002t0001g0049	4	68	0.0588	-28	c.105 others(51): Show c.1056+133364_1056+133391delCCTTCCTTCCTTCCTTCCTTCC TTTCTT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA2_chr2_79508051_80653780	80126584	TTCCCTCC others(21): Show TTCCCTCCCTCCCTCCCTCCCTCCCTCCC	T T	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0036 a0001c0002t0003g0036	1	68	0.0147	-28	c.105 others(51): Show c.1056+216813_1056+216840delCCCTCCCTCCCTCCCTCCCTCC CTCCCT	CTNNA2	ENSG00000066032.19	transcript	ENST00000402739.9	protein_coding	7/18		INFO_REALIGN_3_PRIME	chr2	TogoVar
CTNNA3_chr10_65907523_67701195	66346232	TATATATA others(21): Show TATATATATATATATAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0024 a0001c0001t0002g0024	1	46	0.0217	-28	c.173 others(49): Show c.1732+32892_1732+32919delCTCTCTCTCTCTCTATATATATAT ATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360634	TCTTTCTT others(21): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0004 a0004	a0004c0008 a0004c0008	a0004c0008t0005 a0004c0008t0005	a0004c0008t0005g0033 a0004c0008t0005g0033	1	46	0.0217	-28	c.173 others(49): Show c.1732+18490_1732+18517delGAAGAAAGAAAGAAAGAAAGAAAG AAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360804	CCTTCCTT others(21): Show CCTTCCTTCCTTCCTTTCTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0019 a0001c0001t0019g0019	1	46	0.0217	-28	c.173 others(49): Show c.1732+18320_1732+18347delAAAGAAAGAAAGAAAGGAAGGAAG GAAG	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66360901	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTTTCTTCCTTTCTG	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0003 a0003	a0003c0009 a0003c0009	a0003c0009t0003 a0003c0009t0003	a0003c0009t0003g0036 a0003c0009t0003g0036	1	46	0.0217	-28	c.173 others(49): Show c.1732+18223_1732+18250delCAGAAAGGAAGAAAGAGAGAGAGA GAGA	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	12/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	66966482	TATATTTT others(21): Show TATATTTTTTTTTTCAGGATATACCTTTC	T T	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA19080.hp1 NA18612.hp2 NA19080.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0004 a0002c0002t0002 a0001c0001t0004 a0002c0002t0002	a0001c0001t0004g0043 a0002c0002t0002g0013 a0001c0001t0004g0043 a0002c0002t0002g0013	2	46	0.0435	-28	c.104 others(51): Show c.1048-190986_1048-190959delGAAAGGTATATCCTGAAAAAAA AAATAT	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	7/17			chr10	TogoVar
CTNNA3_chr10_65907523_67701195	67302002	CGAAAGAA others(21): Show CGAAAGAAAGAAAGAAAGAAAGAAAGAAA	C C	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02622.hp1 HG03540.hp2 HG01081.hp1 HG02622.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0007 a0001c0001t0023 a0001c0001t0002 a0001c0001t0007 a0001c0001t0023	a0001c0001t0002g0009 a0001c0001t0007g0020 a0001c0001t0023g0011 a0001c0001t0002g0009 a0001c0001t0007g0020 a0001c0001t0023g0011	3	46	0.0652	-28	c.580 others(47): Show c.580-82160_580-82133delTTTCTTTCTTTCTTTCTTTCTTTCTT TC	CTNNA3	ENSG00000183230.18	transcript	ENST00000433211.7	protein_coding	5/17			chr10	TogoVar
CTNND2_chr5_10966836_11909446	11623789	AATATATA others(21): Show AATATATATATGTGTGTATGTATATATAT	A A	intron_variant intron_variant	MODIFIER	NA19068.hp2 NA19068.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	26	0.0385	-28	c.175 others(47): Show c.175-58761_175-58734delATATATATACATACACACATATATAT AT	CTNND2	ENSG00000169862.21	transcript	ENST00000304623.13	protein_coding	2/21			chr5	TogoVar
CTNND2_chr5_10966836_11909446	11817410	GGAGAGAG others(21): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGA	G G	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0018 a0001c0001t0001g0018	1	26	0.0385	-28	c.38- others(45): Show c.38-85166_38-85139delTCTCTCTCTCTCTCTCTCTCTCTCTCTC	CTNND2	ENSG00000169862.21	transcript	ENST00000304623.13	protein_coding	1/21			chr5	TogoVar
CTSC_chr11_88288592_88342736	88290844	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp2 HG02896.hp2 HG03453.hp2 HG02647.hp2 HG02896.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125	3	434	0.0069	-28	c.31 others(39): Show c.3134_*3161delATATATATATATATATATATATATATAT	CTSC	ENSG00000109861.17	transcript	ENST00000227266.10	protein_coding		2747		chr11	TogoVar
CUL3_chr2_224465150_224590363	224535001	AAAATAAA others(21): Show AAAATAAATAAATAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01169.hp2 HG00099.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0163 a0001c0001t0002g0169 a0001c0001t0002g0163 a0001c0001t0002g0169	2	382	0.0052	-28	c.378 others(43): Show c.378+499_378+526delATTTATTTATTTATTTATTTATTTATTT	CUL3	ENSG00000036257.14	transcript	ENST00000264414.9	protein_coding	3/15			chr2	TogoVar
CUL7_chr6_43032617_43058851	43039151	CTCTGGGC others(21): Show CTCTGGGCCTGCCTCTATGGCAAGCCTCA	C C	intron_variant intron_variant	MODIFIER	NA19076.hp2 NA19076.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0143 a0001c0002t0001g0143	1	302	0.0033	-28	c.429 others(45): Show c.4295-192_4295-165delTGAGGCTTGCCATAGAGGCAGGCCCAGA	CUL7	ENSG00000044090.13	transcript	ENST00000265348.9	protein_coding	22/25			chr6	TogoVar
CUX1_chr7_101811007_102288958	101939058	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02615.hp1 NA19043.hp2 HG02572.hp2 HG02615.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0124 a0001c0001t0001g0127 a0001c0002t0001g0088 a0001c0001t0001g0124 a0001c0001t0001g0127 a0001c0002t0001g0088	3	132	0.0227	-28	c.174 others(47): Show c.174+22862_174+22889delATATATATATATATATATATATATAT AT	CUX1	ENSG00000257923.12	transcript	ENST00000622516.6	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr7	TogoVar
CUX1_chr7_101811007_102288958	101984122	ATATATAT others(21): Show ATATATATACACACACACATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02056.hp2 HG02300.hp1 others(8): Show HG01978.hp1 HG02056.hp2 HG02300.hp1 HG03098.hp2 HG03239.hp1 HG03927.hp2 HG04115.hp1 HG04199.hp1 NA18954.hp2 NA19056.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0011 a0001c0001t0001 a0001c0001t0011	a0001c0001t0001g0006 a0001c0001t0001g0025 a0001c0001t0001g0040 others(8): Show a0001c0001t0001g0006 a0001c0001t0001g0025 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0048 a0001c0001t0001g0057 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0106 a0001c0001t0001g0115 a0001c0001t0011g0053	11	132	0.0833	-28	c.175 others(47): Show c.175-43974_175-43947delATATATACACACACACATATATATAT GT	CUX1	ENSG00000257923.12	transcript	ENST00000622516.6	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr7	TogoVar
CUX1_chr7_101812626_102263233	101939058	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02615.hp1 NA19043.hp2 HG02572.hp1 HG02615.hp1 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0012 a0001c0003t0004 a0001c0002t0012 a0001c0003t0004	a0001c0002t0012g0057 a0001c0003t0004g0031 a0001c0003t0004g0034 a0001c0002t0012g0057 a0001c0003t0004g0031 a0001c0003t0004g0034	3	136	0.0221	-28	c.141 others(47): Show c.141+22862_141+22889delATATATATATATATATATATATATAT AT	CUX1	ENSG00000257923.12	transcript	ENST00000292535.12	protein_coding	2/23		INFO_REALIGN_3_PRIME	chr7	TogoVar

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