Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GOLPH3_chr5_32119716_32179319	32158091	AAAATAAA others(21): Show AAAATAAATAAATAAATAAATAAATAAAT	A A	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0347 a0001c0001t0001g0347	1	380	0.0026	-28	c.226 others(47): Show c.226-14239_226-14212delATTTATTTATTTATTTATTTATTTAT TT	GOLPH3	ENSG00000113384.14	transcript	ENST00000265070.7	protein_coding	1/3			chr5	TogoVar
GOLPH3_chr5_32119716_32179319	32158110	ATAAATAA others(21): Show ATAAATAAATAAATAAATAAAATACACAC	A A	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0035	1	380	0.0026	-28	c.226 others(47): Show c.226-14258_226-14231delGTGTGTATTTTATTTATTTATTTATT TA	GOLPH3	ENSG00000113384.14	transcript	ENST00000265070.7	protein_coding	1/3			chr5	TogoVar
GOT1L1_chr8_37929281_37945124	37939431	AATATATA others(21): Show AATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0138 a0001c0001t0001g0138	1	434	0.0023	-28	c.115 others(43): Show c.115+456_115+483delATATATATATATATATATATATATATAT	GOT1L1	ENSG00000169154.7	transcript	ENST00000307599.5	protein_coding	1/8			chr8	TogoVar
GP6_chr19_55008705_55043264	55029315	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03942.hp2 NA18747.hp2 others(2): Show HG01243.hp1 HG03942.hp2 NA18747.hp2 NA18968.hp2 NA19067.hp1	a0002 a0003 a0004 a0002 a0003 a0004	a0002c0002 a0003c0003 a0004c0008 a0002c0002 a0003c0003 a0004c0008	a0002c0002t0001 a0003c0003t0003 a0004c0008t0002 a0002c0002t0001 a0003c0003t0003 a0004c0008t0002	a0002c0002t0001g0320 a0002c0002t0001g0340 a0003c0003t0003g0032 others(2): Show a0002c0002t0001g0320 a0002c0002t0001g0340 a0003c0003t0003g0032 a0003c0003t0003g0054 a0004c0008t0002g0305	5	441	0.0113	-28	c.326 others(45): Show c.326-1481_326-1454delATATATATATATATATATATATATATAT	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029348	ATATATAT others(21): Show ATATATATATATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG02523.hp2 NA18960.hp2 others(1): Show HG01952.hp2 HG02523.hp2 NA18960.hp2 NA18974.hp1	a0002 a0003 a0005 a0002 a0003 a0005	a0002c0002 a0003c0003 a0005c0006 a0002c0002 a0003c0003 a0005c0006	a0002c0002t0001 a0003c0003t0003 a0005c0006t0001 a0002c0002t0001 a0003c0003t0003 a0005c0006t0001	a0002c0002t0001g0269 a0003c0003t0003g0067 a0005c0006t0001g0016 others(1): Show a0002c0002t0001g0269 a0003c0003t0003g0067 a0005c0006t0001g0016 a0005c0006t0001g0058	4	441	0.0091	-28	c.326 others(45): Show c.326-1514_326-1487delAATATATATATATATATATATATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029350	ATATATAT others(21): Show ATATATATATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0049 a0003c0003t0003g0049	1	441	0.0023	-28	c.326 others(45): Show c.326-1516_326-1489delAAAATATATATATATATATATATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029352	ATATATAT others(21): Show ATATATATATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02895.hp2 HG02071.hp2 HG02895.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0006 a0003c0003t0003 a0002c0002t0006 a0003c0003t0003	a0002c0002t0006g0322 a0003c0003t0003g0045 a0002c0002t0006g0322 a0003c0003t0003g0045	2	441	0.0045	-28	c.326 others(45): Show c.326-1518_326-1491delAAAAAATATATATATATATATATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029356	ATATATAT others(21): Show ATATATATATATATATATATTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03209.hp1 HG02622.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0129 a0001c0001t0001g0179 a0001c0001t0001g0129 a0001c0001t0001g0179	2	441	0.0045	-28	c.326 others(45): Show c.326-1522_326-1495delAAAAAAAAAATATATATATATATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029360	ATATATAT others(21): Show ATATATATATATATATTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0002 a0004c0005t0002	a0004c0005t0002g0302 a0004c0005t0002g0302	1	441	0.0023	-28	c.326 others(45): Show c.326-1526_326-1499delAAAAAAAAAAAAAATATATATATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GP6_chr19_55008705_55043264	55029368	ATATATAT others(21): Show ATATATATTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0003 a0008c0010t0003	a0008c0010t0003g0380 a0008c0010t0003g0380	1	441	0.0023	-28	c.326 others(45): Show c.326-1534_326-1507delAAAAAAAAAAAAAAAAAAAAAATATATA	GP6	ENSG00000088053.11	transcript	ENST00000310373.7	protein_coding	3/7			chr19	TogoVar
GPAA1_chr8_144077634_144091216	144089587	TGTATATA others(21): Show TGTATATACATATATATATATATATATAC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01099.hp1 homoSapiens_chm13v2.hp1 HG01099.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	338	0.0059	-28	c.34 others(39): Show c.3463_*3490delGTATATACATATATATATATATATATAC	GPAA1	ENSG00000197858.12	transcript	ENST00000355091.9	protein_coding		3372		chr8	TogoVar
GPALPP1_chr13_44984538_45035305	45024147	CTGTGTGT others(21): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTG	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02559.hp1 HG02896.hp2 others(5): Show HG01109.hp2 HG02559.hp1 HG02896.hp2 HG02897.hp1 HG02976.hp2 HG03098.hp1 HG03139.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0192 a0001c0001t0008g0195 a0001c0001t0008g0204 others(5): Show a0001c0001t0008g0192 a0001c0001t0008g0195 a0001c0001t0008g0204 a0001c0001t0008g0205 a0001c0001t0008g0206 a0001c0001t0008g0207 a0001c0001t0008g0208 a0001c0001t0008g0209	8	348	0.0230	-28	c.805 others(45): Show c.805-3604_805-3577delGTGTGTGTGTGTGTGTGTGTGTGTGTGT	GPALPP1	ENSG00000133114.18	transcript	ENST00000379151.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPAT3_chr4_83531108_83610875	83574624	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00408.hp1 HG00438.hp2 others(43): Show HG00099.hp2 HG00408.hp1 HG00438.hp2 HG01070.hp2 HG01192.hp1 HG01256.hp1 HG01433.hp2 HG01517.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp2 HG02040.hp1 HG02300.hp1 HG02717.hp1 HG02922.hp2 HG03490.hp1 HG03491.hp2 HG03710.hp2 HG04115.hp1 HG04228.hp2 NA18612.hp2 NA18943.hp1 NA18943.hp2 NA18944.hp2 NA18954.hp1 NA18956.hp2 NA18960.hp2 NA18968.hp2 NA18982.hp2 NA18984.hp2 NA18985.hp2 NA18997.hp1 NA19010.hp2 NA19011.hp2 NA19055.hp1 NA19058.hp2 NA19064.hp2 NA19077.hp1 NA19077.hp2 NA19079.hp1 NA19080.hp2 NA19081.hp1 NA19085.hp1 NA19086.hp1 NA19086.hp2 NA19091.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0010 a0003c0003t0002	a0001c0001t0001g0076 a0001c0001t0001g0085 a0001c0001t0001g0237 others(43): Show a0001c0001t0001g0076 a0001c0001t0001g0085 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0243 a0001c0001t0001g0298 a0001c0001t0002g0015 a0001c0001t0002g0025 a0001c0001t0002g0039 a0001c0001t0002g0112 a0001c0001t0002g0155 a0001c0001t0002g0185 a0001c0001t0002g0211 a0001c0001t0002g0238 a0001c0001t0002g0244 a0001c0001t0002g0248 a0001c0001t0002g0250 a0001c0001t0002g0251 a0001c0001t0002g0254 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0258 a0001c0001t0002g0261 a0001c0001t0002g0262 a0001c0001t0002g0264 a0001c0001t0002g0265 a0001c0001t0002g0267 a0001c0001t0002g0269 a0001c0001t0002g0271 a0001c0001t0002g0272 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0002g0279 a0001c0001t0002g0285 a0001c0001t0002g0286 a0001c0001t0002g0295 a0001c0001t0002g0296 a0001c0001t0002g0315 a0001c0001t0002g0316 a0001c0001t0002g0318 a0001c0001t0002g0330 a0001c0001t0010g0246 a0003c0003t0002g0283 a0003c0003t0002g0284	46	334	0.1377	-28	c.209 others(45): Show c.209-6912_209-6885delTTTTTTTTTTTTTTTTTTTTTTTTTTTT	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPAT3_chr4_83531108_83610875	83579053	TCTTTCTT others(21): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTC	T T	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01433.hp2 HG03490.hp1 others(6): Show HG01256.hp2 HG01433.hp2 HG03490.hp1 HG03710.hp2 HG04115.hp1 NA18948.hp2 NA18965.hp1 NA19079.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0010 a0001c0001t0002 a0001c0001t0010	a0001c0001t0002g0025 a0001c0001t0002g0211 a0001c0001t0002g0238 others(6): Show a0001c0001t0002g0025 a0001c0001t0002g0211 a0001c0001t0002g0238 a0001c0001t0002g0251 a0001c0001t0002g0260 a0001c0001t0002g0288 a0001c0001t0002g0316 a0001c0001t0010g0246 a0001c0001t0010g0268	9	334	0.0270	-28	c.209 others(45): Show c.209-2507_209-2480delTTTCTTTCTTTCTTTCTTTCTTTCTTCC	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPAT3_chr4_83531108_83610875	83579059	TTTCTTTC others(21): Show TTTCTTTCTTTCTTTCTTTCTTCCCTTCC	T T	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA19085.hp2 NA18969.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0010 a0001c0001t0003g0034 a0001c0001t0003g0010 a0001c0001t0003g0034	2	334	0.0060	-28	c.209 others(45): Show c.209-2499_209-2472delTTTCTTTCTTTCTTTCTTCCCTTCCTTC	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPAT3_chr4_83531108_83610875	83579063	TTTCTTTC others(21): Show TTTCTTTCTTTCTTTCTTCCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0239 a0001c0001t0003g0239	1	334	0.0030	-28	c.209 others(45): Show c.209-2495_209-2468delTTTCTTTCTTTCTTCCCTTCCTTCCTTC	GPAT3	ENSG00000138678.11	transcript	ENST00000264409.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
GPATCH2_chr1_217421992_217636090	217433370	ATATATAT others(21): Show ATATATATATATATATTTATTTATTTATT	A A	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0001 a0001c0001t0025g0001	1	188	0.0053	-28	c.136 others(47): Show c.1367-2033_1367-2006delAATAAATAAATAAATATATATATATA TA	GPATCH2	ENSG00000092978.11	transcript	ENST00000366935.8	protein_coding	9/9			chr1	TogoVar
GPC3_chrX_133530745_133990594	133791797	TTTCCTTC others(21): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02647.hp1 HG02055.hp1 HG02647.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0084 a0001c0002t0002g0146 a0001c0002t0002g0084 a0001c0002t0002g0146	2	152	0.0132	-28	c.338 others(47): Show c.338-37649_338-37622delGGAAGGAAGGAAGGAAGGAAGGAAGG AA	GPC3	ENSG00000147257.16	transcript	ENST00000370818.8	protein_coding	2/7			chrX	TogoVar
GPC5_chr13_91393621_92872237	91572085	ATGTACAT others(21): Show ATGTACATGTGTGTGTATATACACACATG	A A	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0002 a0001c0001t0003g0002	1	42	0.0238	-28	c.326 others(49): Show c.326-121100_326-121073delGTACATGTGTGTGTATATACACAC ATGT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91572094	TGTGTGTA others(21): Show TGTGTGTATATACACACATGTATATATAC	T T	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	42	0.0238	-28	c.326 others(49): Show c.326-121077_326-121050delCATGTATATATACGTGTGTATATA CACA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91674516	CATATATG others(21): Show CATATATGCGTATGTGTATATATACGCAT	C C	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02280.hp2 HG02809.hp1 others(5): Show HG02145.hp2 HG02280.hp2 HG02809.hp1 HG03041.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 NA19043.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(3): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0003c0003t0001 a0003c0003t0002	a0001c0001t0001g0021 a0001c0001t0001g0030 a0002c0002t0001g0008 others(5): Show a0001c0001t0001g0021 a0001c0001t0001g0030 a0002c0002t0001g0008 a0002c0002t0002g0015 a0002c0002t0004g0026 a0003c0003t0001g0001 a0003c0003t0001g0010 a0003c0003t0002g0016	8	42	0.1905	-28	c.326 others(47): Show c.326-18568_326-18541delATATACGCATATATATGCGTATGTGT AT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	2/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	91721064	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	C C	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02809.hp1 HG03041.hp2 others(2): Show HG01891.hp2 HG02809.hp1 HG03041.hp2 HG03239.hp2 HG03486.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0005 a0001c0001 a0002c0002 a0005c0005	a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 a0002c0002t0002 a0005c0005t0002	a0001c0001t0001g0018 a0001c0001t0003g0002 a0002c0002t0001g0008 others(2): Show a0001c0001t0001g0018 a0001c0001t0003g0002 a0002c0002t0001g0008 a0002c0002t0002g0038 a0005c0005t0002g0035	5	42	0.1191	-28	c.102 others(47): Show c.1021-7419_1021-7392delCTTTCTTTCTTTCTTTCTTTCTTTCT TT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	3/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92031724	ATATATTA others(21): Show ATATATTACATATTATATATAATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG03579.hp1 HG02615.hp1 HG03579.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0011 a0002c0002t0002g0015 a0001c0001t0001g0011 a0002c0002t0002g0015	2	42	0.0476	-28	c.140 others(51): Show c.1402-113078_1402-113051delTTATATTACATATTATATATAA TATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92381897	AATCATAT others(21): Show AATCATATATATGATATATATAATCATAT	A A	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	42	0.0238	-28	c.156 others(51): Show c.1561+236911_1561+236938delCATATATATGATATATATAATC ATATAT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92527235	AAGAAAGA others(21): Show AAGAAAGAAAGAAAGAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0039 a0001c0001t0002g0039	1	42	0.0238	-28	c.156 others(51): Show c.1562-339045_1562-339018delGAAAGAAAGAAAGAGAAAGAAA GAAAGA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92663856	CTATATAT others(21): Show CTATATATATATATATATATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	42	0.0238	-28	c.156 others(51): Show c.1562-202405_1562-202378delTATATATATATATATATATATA TATATA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC5_chr13_91393621_92872237	92674540	ATGAAGCA others(21): Show ATGAAGCAGGAGCTTCATGAAGCTCTTCT	A A	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp2 HG01261.hp1 others(26): Show HG01109.hp1 HG01109.hp2 HG01261.hp1 HG01891.hp2 HG02145.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02615.hp1 HG02622.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02922.hp2 HG03041.hp1 HG03041.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp1 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG06807.hp1 HG06807.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0001c0004 a0002c0002 others(3): Show a0001c0001 a0001c0004 a0002c0002 a0003c0003 a0004c0006 a0005c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0004t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0003c0003t0001 a0003c0003t0002 a0004c0006t0001 a0005c0005t0002	a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0011 others(26): Show a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0018 a0001c0001t0001g0021 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0027 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0002g0036 a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0042 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0003g0004 a0001c0004t0001g0024 a0002c0002t0001g0008 a0002c0002t0002g0015 a0002c0002t0002g0038 a0002c0002t0004g0026 a0003c0003t0001g0010 a0003c0003t0002g0016 a0004c0006t0001g0028 a0005c0005t0002g0035	29	42	0.6905	-28	c.156 others(51): Show c.1562-191706_1562-191679delGGAGCTTCATGAAGCTCTTCTT GAAGCA	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93640753	TTCCCTCC others(21): Show TTCCCTCCCTCCTCCCCACTTTCCTTCCC	T T	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0074 a0001c0001t0019g0074	1	76	0.0132	-28	c.319 others(47): Show c.319+95342_319+95369delCCTCCCCACTTTCCTTCCCTCCCTCC CT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93676120	AAAAAAAA others(21): Show AAAAAAAATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG03225.hp1 NA19240.hp2 HG01981.hp1 HG03225.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0032 a0001c0001t0036 a0001c0001t0031 a0001c0001t0032 a0001c0001t0036	a0001c0001t0031g0031 a0001c0001t0032g0027 a0001c0001t0036g0001 a0001c0001t0031g0031 a0001c0001t0032g0027 a0001c0001t0036g0001	3	76	0.0395	-28	c.319 others(49): Show c.319+130701_319+130728delAAAAAATATATATATATATATATA TATA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93789598	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0005 a0001c0001t0027g0005	1	76	0.0132	-28	c.320 others(47): Show c.320-40536_320-40509delTATATATATATATATATATATATATA TA	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPD1L_chr3_32101620_32173709	32115758	CTTTTTTT others(21): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTT	C C	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00423.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0158 a0001c0001t0002g0158	1	360	0.0028	-28	c.47+ others(43): Show c.47+9021_47+9048delTTTTTTTTTTTTTTTTTTTTTTTTTTTT	GPD1L	ENSG00000152642.11	transcript	ENST00000282541.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
GPD1L_chr3_32101620_32173709	32140655	TTGTACCA others(21): Show TTGTACCAAGAAACAGGTGGCTACATCCA	T T	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01884.hp1 HG02630.hp2 others(1): Show HG01192.hp1 HG01884.hp1 HG02630.hp2 HG02970.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0012 a0001c0004t0001 a0001c0003t0012 a0001c0004t0001	a0001c0003t0012g0140 a0001c0003t0012g0141 a0001c0003t0012g0142 others(1): Show a0001c0003t0012g0140 a0001c0003t0012g0141 a0001c0003t0012g0142 a0001c0004t0001g0146	4	360	0.0111	-28	c.505 others(43): Show c.505+292_505+319delTACCAAGAAACAGGTGGCTACATCCATG	GPD1L	ENSG00000152642.11	transcript	ENST00000282541.10	protein_coding	4/7		INFO_REALIGN_3_PRIME	chr3	TogoVar
GPHN_chr14_66503147_67186803	66746600	AACAACTT others(21): Show AACAACTTTATGTAGTTGCTTTCCTGGTC	A A	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	234	0.0043	-28	c.144 others(47): Show c.144-29863_144-29836delACAACTTTATGTAGTTGCTTTCCTGG TC	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	2/22			chr14	TogoVar
GPHN_chr14_66503147_67186803	67144240	AAAAAAAA others(21): Show AAAAAAAAAAAATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0001 a0001c0001t0016g0001	1	234	0.0043	-28	c.183 others(45): Show c.1836+793_1836+820delAAAAAAAAAATATATATATATATATATA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPIHBP1_chr8_143208218_143222170	143213623	TAGGACAG others(21): Show TAGGACAGTGAGTAGGGTGAGTAGGCTGC	T T	intron_variant intron_variant	MODIFIER	HG02602.hp2 NA18948.hp2 HG02602.hp2 NA18948.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0015 a0001c0001t0014 a0001c0001t0015	a0001c0001t0014g0012 a0001c0001t0015g0011 a0001c0001t0014g0012 a0001c0001t0015g0011	2	106	0.0189	-28	c.53- others(41): Show c.53-174_53-147delCTGCAGGACAGTGAGTAGGGTGAGTAGG	GPIHBP1	ENSG00000277494.2	transcript	ENST00000622500.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr8	TogoVar
GPM6A_chr4_175627937_175817264	175711431	TATATATA others(21): Show TATATATATATATATATATATATATATAC	T T	intron_variant intron_variant	MODIFIER	NA19009.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0209 a0001c0001t0003g0209	1	270	0.0037	-28	c.38- others(43): Show c.38-9692_38-9665delGTATATATATATATATATATATATATAT	GPM6A	ENSG00000150625.17	transcript	ENST00000393658.7	protein_coding	1/6			chr4	TogoVar
GPM6B_chrX_13765939_13822093	13799190	ATTTTTTT others(21): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTT	A A	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	328	0.0031	-28	c.181 others(45): Show c.181+8432_181+8459delAAAAAAAAAAAAAAAAAAAAAAAAAAAA	GPM6B	ENSG00000046653.15	transcript	ENST00000316715.9	protein_coding	2/7			chrX	TogoVar
GPR12_chr13_26750200_26765786	26760791	CCGCGCCC others(21): Show CCGCGCCCGCCCGGCCCACACGCTCCCCG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02015.hp1 HG02015.hp2 NA18950.hp1 others(7): Show HG02015.hp1 HG02015.hp2 NA18950.hp1 NA18978.hp1 NA18986.hp1 NA19000.hp2 NA19002.hp1 NA19011.hp2 NA19062.hp2 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0001g0001 a0001c0001t0002g0002	10	382	0.0262	-28	c.-25 others(37): Show c.-256_-229delCGGGGAGCGTGTGGGCCGGGCGGGCGCG	GPR12	ENSG00000132975.8	transcript	ENST00000405846.5	protein_coding		6		chr13	TogoVar
GPR137C_chr14_52547836_52642713	52596269	CACGGGTC others(21): Show CACGGGTCAGGGACCCACTTGAGGAGGCA	C C	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	1	346	0.0029	-28	c.445 others(45): Show c.445-2002_445-1975delACGGGTCAGGGACCCACTTGAGGAGGCA	GPR137C	ENSG00000180998.12	transcript	ENST00000321662.11	protein_coding	1/6			chr14	TogoVar
GPR146_chr7_1039546_1064261	1041214	CGGGACCT others(21): Show CGGGACCTGGGCTCCGCGCTGCGGGGAAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG03710.hp2 HG04115.hp2 others(3): Show HG00099.hp1 HG03710.hp2 HG04115.hp2 HG04199.hp1 NA18944.hp1 NA19068.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0003 a0003c0005 others(1): Show a0001c0001 a0002c0003 a0003c0005 a0004c0006	a0001c0001t0001 a0001c0001t0003 a0002c0003t0004 others(2): Show a0001c0001t0001 a0001c0001t0003 a0002c0003t0004 a0003c0005t0001 a0004c0006t0001	a0001c0001t0001g0157 a0001c0001t0003g0008 a0002c0003t0004g0173 others(2): Show a0001c0001t0001g0157 a0001c0001t0003g0008 a0002c0003t0004g0173 a0003c0005t0001g0038 a0004c0006t0001g0201	6	434	0.0138	-28	c.-34 others(39): Show c.-3468_-3441delGGGACCTGGGCTCCGCGCTGCGGGGAAG	GPR146	ENSG00000164849.10	transcript	ENST00000444847.2	protein_coding		3331		chr7	TogoVar
GPR146_chr7_1039546_1064261	1041302	ACCTGGGG others(21): Show ACCTGGGGTCCGCGCTGCGGGGAAGGGGG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02647.hp1 HG02717.hp1 HG02965.hp1 others(1): Show HG02647.hp1 HG02717.hp1 HG02965.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0014 a0001c0001t0008 a0001c0001t0014	a0001c0001t0008g0027 a0001c0001t0008g0064 a0001c0001t0014g0057 a0001c0001t0008g0027 a0001c0001t0008g0064 a0001c0001t0014g0057	4	434	0.0092	-28	c.-33 others(39): Show c.-3380_-3353delCCTGGGGTCCGCGCTGCGGGGAAGGGGG	GPR146	ENSG00000164849.10	transcript	ENST00000444847.2	protein_coding		3243		chr7	TogoVar
GPR146_chr7_1039546_1064261	1041376	AGGGGAAC others(21): Show AGGGGAACGGGACCTGGGGTCCGCGCTGC	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0126	1	434	0.0023	-28	c.-33 others(39): Show c.-3306_-3279delGGGGAACGGGACCTGGGGTCCGCGCTGC	GPR146	ENSG00000164849.10	transcript	ENST00000444847.2	protein_coding		3169		chr7	TogoVar
GPR149_chr3_154329943_154435190	154335764	GTTATAAA others(21): Show GTTATAAAGAATTTGTTTGCCTTCAAATC	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0004 a0004	a0004c0009 a0004c0009	a0004c0009t0024 a0004c0009t0024	a0004c0009t0024g0181 a0004c0009t0024g0181	1	336	0.0030	-28	c.19 others(39): Show c.1907_*1934delGATTTGAAGGCAAACAAATTCTTTATAA	GPR149	ENSG00000174948.6	transcript	ENST00000389740.3	protein_coding	4/4	1907		chr3	TogoVar
GPR149_chr3_154329943_154435190	154341292	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01074.hp2 others(7): Show HG01069.hp1 HG01071.hp2 HG01074.hp2 HG01891.hp1 HG02055.hp1 HG02145.hp2 HG02280.hp1 HG02615.hp2 HG02647.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0015 a0001c0001t0016 others(1): Show a0001c0001t0006 a0001c0001t0015 a0001c0001t0016 a0001c0001t0020	a0001c0001t0006g0002 a0001c0001t0006g0050 a0001c0001t0015g0301 others(6): Show a0001c0001t0006g0002 a0001c0001t0006g0050 a0001c0001t0015g0301 a0001c0001t0015g0311 a0001c0001t0015g0312 a0001c0001t0016g0140 a0001c0001t0016g0143 a0001c0001t0020g0274 a0001c0001t0020g0280	10	336	0.0298	-28	c.162 others(47): Show c.1624-3049_1624-3022delATATATATATATATATATATATATAT AT	GPR149	ENSG00000174948.6	transcript	ENST00000389740.3	protein_coding	3/3			chr3	TogoVar
GPR151_chr5_146508144_146521190	146520659	TATATATA others(21): Show TATATATATATATATATATATATGTACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	420	0.0024	-28	c.-45 others(39): Show c.-4574_-4547delGTGTACATATATATATATATATATATAT	GPR151	ENSG00000173250.3	transcript	ENST00000311104.3	protein_coding		4470		chr5	TogoVar
GPR151_chr5_146508144_146521190	146520661	TATATATA others(21): Show TATATATATATATATATATATGTACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01346.hp2 HG01993.hp2 HG02572.hp1 HG01346.hp2 HG01993.hp2 HG02572.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0000 a0002c0002t0002g0000	3	420	0.0071	-28	c.-45 others(39): Show c.-4576_-4549delGTGTGTACATATATATATATATATATAT	GPR151	ENSG00000173250.3	transcript	ENST00000311104.3	protein_coding		4472		chr5	TogoVar
GPR156_chr3_120160478_120290222	120278640	TAGCTATT others(21): Show TAGCTATTATTAAAAAGTCAAAAAACAAC	T T	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0013 a0001c0001t0003g0013	1	322	0.0031	-28	c.-38 others(47): Show c.-381+6361_-381+6388delGTTGTTTTTTGACTTTTTAATAATAG CT	GPR156	ENSG00000175697.11	transcript	ENST00000464295.6	protein_coding	1/9			chr3	TogoVar
GPR158_chr10_25170001_25607229	25241165	CTTTCTTT others(21): Show CTTTCTTTCTTTCTTTCTTTCTTTCCTTT	C C	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0110 a0001c0001t0001g0110	1	162	0.0062	-28	c.100 others(49): Show c.1008+20009_1008+20036delTTTCTTTCTTTCTTTCTTTCTTTC CTTT	GPR158	ENSG00000151025.11	transcript	ENST00000376351.4	protein_coding	2/10			chr10	TogoVar
GPR174_chrX_79139688_79180318	79144974	TTCTTTTT others(21): Show TTCTTTTTCTTTCTTTCTTTCTCTCTCTC	T T	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG00735.hp2 HG02602.hp1 HG03927.hp2 HG00735.hp2 HG02602.hp1 HG03927.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0020 a0002c0002t0020	a0002c0002t0020g0022 a0002c0002t0020g0049 a0002c0002t0020g0022 a0002c0002t0020g0049	3	315	0.0095	-28	c.-89 others(37): Show c.-893_-866delTTTTCTTTCTTTCTTTCTCTCTCTCTCT	GPR174	ENSG00000147138.3	transcript	ENST00000645147.2	protein_coding	1/3	26003	INFO_REALIGN_3_PRIME	chrX	TogoVar
GPR174_chrX_79139688_79180318	79144996	CTCTCTCT others(21): Show CTCTCTCTCTCTTTCTTTCTTTCTTTCTT	C C	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18989.hp1 NA19065.hp1 NA19070.hp1 others(1): Show NA18989.hp1 NA19065.hp1 NA19070.hp1 NA20905.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0019 a0002c0002t0062 a0002c0002t0019 a0002c0002t0062	a0002c0002t0019g0002 a0002c0002t0019g0010 a0002c0002t0019g0126 others(1): Show a0002c0002t0019g0002 a0002c0002t0019g0010 a0002c0002t0019g0126 a0002c0002t0062g0121	4	315	0.0127	-28	c.-87 others(37): Show c.-871_-844delCTCTCTCTTTCTTTCTTTCTTTCTTTCT	GPR174	ENSG00000147138.3	transcript	ENST00000645147.2	protein_coding	1/3	25981	INFO_REALIGN_3_PRIME	chrX	TogoVar

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