Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OPCML_chr11_132409981_133537501	132687369	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0068 a0001c0001t0012g0068	1	68	0.0147	-28	c.147 others(47): Show c.147-30078_147-30051delATATATATATATATATATATATATAT AT	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	2/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	132716390	TTATCTAT others(21): Show TTATCTATCTATCTATCTGTCTGTCTATC	T T	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02451.hp2 HG02647.hp1 others(1): Show HG01496.hp1 HG02451.hp2 HG02647.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0020 others(1): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0020 a0001c0001t0022	a0001c0001t0001g0015 a0001c0001t0008g0010 a0001c0001t0020g0033 others(1): Show a0001c0001t0001g0015 a0001c0001t0008g0010 a0001c0001t0020g0033 a0001c0001t0022g0014	4	68	0.0588	-28	c.147 others(47): Show c.147-59099_147-59072delGATAGACAGACAGATAGATAGATAGA TA	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	2/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	132975529	CAAAAAAA others(21): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03516.hp1 HG01884.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0013 a0001c0001t0006 a0001c0001t0013	a0001c0001t0006g0037 a0001c0001t0013g0041 a0001c0001t0006g0037 a0001c0001t0013g0041	2	68	0.0294	-28	c.62- others(45): Show c.62-32547_62-32520delTTTTTTTTTTTTTTTTTTTTTTTTTTTT	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	133015403	GGAAGGAA others(21): Show GGAAGGAAGGAAGGAAGGAAGGAAGGAAT	G G	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0011 a0001c0001t0001g0011	1	68	0.0147	-28	c.62- others(45): Show c.62-72421_62-72394delATTCCTTCCTTCCTTCCTTCCTTCCTTC	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	133458358	ATATATAT others(21): Show ATATATATACACATATATACACGTGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG06807.hp1 HG02965.hp2 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0032 a0001c0001t0010 a0001c0001t0032	a0001c0001t0010g0066 a0001c0001t0032g0065 a0001c0001t0010g0066 a0001c0001t0032g0065	2	68	0.0294	-28	c.61+ others(45): Show c.61+73878_61+73905delCACACACGTGTATATATGTGTATATATA	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPHN1_chrX_68037344_68438495	68141904	TAAAGAAA others(21): Show TAAAGAAAGAAAGAAAGAAAGAAAGAAAG	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0109 a0001c0001t0003g0109	1	155	0.0065	-28	c.127 others(49): Show c.1277-22600_1277-22573delCTTTCTTTCTTTCTTTCTTTCTTT CTTT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	15/24			chrX	TogoVar
OPHN1_chrX_68037344_68438495	68317360	AAAGAAAG others(21): Show AAAGAAAGAAAGAAAGAAAGGAAGGAAGG	A A	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02886.hp2 NA19043.hp1 HG02647.hp1 HG02886.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0122 a0001c0001t0006g0105 a0001c0001t0006g0106 a0001c0001t0003g0122 a0001c0001t0006g0105 a0001c0001t0006g0106	3	155	0.0194	-28	c.155 others(47): Show c.155-18292_155-18265delCCTTCCTTCCTTTCTTTCTTTCTTTC TT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	2/24			chrX	TogoVar
OPHN1_chrX_68037344_68438495	68416057	TATATATA others(21): Show TATATATATATAGAGAGAGAGAGAGAGAG	T T	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0005 a0001c0001t0004g0005	1	155	0.0065	-28	c.154 others(47): Show c.154+16782_154+16809delCTCTCTCTCTCTCTCTCTATATATAT AT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	2/24			chrX	TogoVar
OR10G4_chr11_124007997_124023732	124022773	CAGAGAGA others(21): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAG	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0037 a0003c0003t0001g0037	1	438	0.0023	-28	c.62 others(39): Show c.6264_*6291delAGAGAGAGAGAGAGAGAGAGAGAGAGAG	OR10G4	ENSG00000254737.3	transcript	ENST00000641722.1	protein_coding		4042		chr11	TogoVar
OR10G6_chr11_123989163_124000161	123995230	TTCTATCT others(21): Show TTCTATCTATCTATCTATCTATCTATCTA	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp2 HG03041.hp1 HG02055.hp2 HG03041.hp1	a0001 a0001	a0001c0004 a0001c0005 a0001c0004 a0001c0005	a0001c0004t0000 a0001c0005t0000 a0001c0004t0000 a0001c0005t0000	a0001c0004t0000g0000 a0001c0005t0000g0000 a0001c0004t0000g0000 a0001c0005t0000g0000	2	464	0.0043	-28	c.-97 others(35): Show c.-97_-70delTAGATAGATAGATAGATAGATAGATAGA	OR10G6	ENSG00000198674.3	transcript	ENST00000307002.3	protein_coding		70		chr11	TogoVar
OR10G8_chr11_124021798_124035634	124022773	CAGAGAGA others(21): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	446	0.0022	-28	c.-41 others(39): Show c.-4121_-4094delAGAGAGAGAGAGAGAGAGAGAGAGAGAG	OR10G8	ENSG00000234560.5	transcript	ENST00000641224.2	protein_coding		4024		chr11	TogoVar
OR10G9_chr11_124018013_124028948	124022773	CAGAGAGA others(21): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAG	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0000 a0002c0001t0000	a0002c0001t0000g0000 a0002c0001t0000g0000	1	442	0.0023	-28	c.-23 others(37): Show c.-239_-212delAGAGAGAGAGAGAGAGAGAGAGAGAGAG	OR10G9	ENSG00000236981.1	transcript	ENST00000375024.1	protein_coding		239		chr11	TogoVar
OR10H1_chr19_15799549_15820664	15814468	TGTGTGTG others(21): Show TGTGTGTGTGTGTGAGAGAGAGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01109.hp2 HG02280.hp2 others(2): Show HG00741.hp2 HG01109.hp2 HG02280.hp2 HG03209.hp2 NA18906.hp2	a0001 a0005 a0001 a0005	a0001c0004 a0005c0010 a0001c0004 a0005c0010	a0001c0004t0004 a0005c0010t0004 a0001c0004t0004 a0005c0010t0004	a0001c0004t0004g0051 a0005c0010t0004g0050 a0005c0010t0004g0199 a0001c0004t0004g0051 a0005c0010t0004g0050 a0005c0010t0004g0199	5	398	0.0126	-28	c.-77 others(47): Show c.-778+1059_-778+1086delTCTCTCTCTCTCTCTCACACACACAC AC	OR10H1	ENSG00000186723.4	transcript	ENST00000641419.1	protein_coding	1/3			chr19	TogoVar
OR10H1_chr19_15799549_15820664	15814480	TGAGAGAG others(21): Show TGAGAGAGAGAGAGAGAGAGAGAGAGAGA	T T	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02257.hp2 others(2): Show HG01884.hp1 HG02055.hp2 HG02257.hp2 HG03225.hp1 NA18906.hp1	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0012 a0003c0007t0012	a0003c0007t0012g0027 a0003c0007t0012g0113 a0003c0007t0012g0203 a0003c0007t0012g0027 a0003c0007t0012g0113 a0003c0007t0012g0203	5	398	0.0126	-28	c.-77 others(47): Show c.-778+1047_-778+1074delTCTCTCTCTCTCTCTCTCTCTCTCTC TC	OR10H1	ENSG00000186723.4	transcript	ENST00000641419.1	protein_coding	1/3			chr19	TogoVar
OR10W1_chr11_58261792_58273260	58270386	CCTTTCTT others(21): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18939.hp1 NA18968.hp1 NA19060.hp2 NA18939.hp1 NA18968.hp1 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	3	362	0.0083	-28	c.-25 others(39): Show c.-2556_-2529delAAAGAAAGAAAGAAAGAAAGAAAGAAAG	OR10W1	ENSG00000172772.3	transcript	ENST00000395079.2	protein_coding		2127		chr11	TogoVar
OR14A16_chr1_247809660_247829119	247825961	TATATACA others(21): Show TATATACACACACATATATATACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG01109.hp2 HG01243.hp1 others(36): Show HG00741.hp1 HG01109.hp2 HG01243.hp1 HG01243.hp2 HG01256.hp1 HG01346.hp1 HG01361.hp1 HG01884.hp1 HG01981.hp2 HG02055.hp2 HG02109.hp1 HG02257.hp1 HG02280.hp1 HG02451.hp2 HG02622.hp1 HG02647.hp1 HG02647.hp2 HG02683.hp2 HG02717.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 HG03041.hp1 HG03139.hp1 HG03225.hp1 HG03225.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp1 NA18522.hp2 NA19030.hp2 NA19043.hp2 NA19056.hp2 NA20129.hp1 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0008 a0002c0004 a0002c0010 others(2): Show a0001c0008 a0002c0004 a0002c0010 a0003c0005 a0004c0006	a0001c0008t0002 a0002c0004t0001 a0002c0010t0001 others(2): Show a0001c0008t0002 a0002c0004t0001 a0002c0010t0001 a0003c0005t0001 a0004c0006t0001	a0001c0008t0002g0014 a0002c0004t0001g0005 a0002c0004t0001g0012 others(10): Show a0001c0008t0002g0014 a0002c0004t0001g0005 a0002c0004t0001g0012 a0002c0004t0001g0016 a0002c0004t0001g0037 a0002c0004t0001g0038 a0002c0004t0001g0040 a0002c0010t0001g0039 a0003c0005t0001g0006 a0004c0006t0001g0011 a0004c0006t0001g0015 a0004c0006t0001g0035 a0004c0006t0001g0036	39	342	0.1140	-28	c.-21 others(39): Show c.-2167_-2140delGTGTGTGTATATATATGTGTGTGTATAT	OR14A16	ENSG00000196772.5	transcript	ENST00000641093.1	protein_coding		1843		chr1	TogoVar
OR1A1_chr17_3202667_3223896	3221694	TATAATAC others(21): Show TATAATACATTATATATTATTATATATTA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG02622.hp1 HG06807.hp2 others(2): Show HG01167.hp1 HG02622.hp1 HG06807.hp2 NA18906.hp2 NA19043.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0009 a0001c0008t0044 a0001c0008t0009 a0001c0008t0044	a0001c0008t0009g0010 a0001c0008t0044g0051 a0001c0008t0009g0010 a0001c0008t0044g0051	5	434	0.0115	-28	c.51 others(39): Show c.5145_*5172delATAATACATTATATATTATTATATATTA	OR1A1	ENSG00000172146.4	transcript	ENST00000641732.2	protein_coding		2799		chr17	TogoVar
OR1F1_chr16_3183204_3211556	3197898	AGAGGGAG others(21): Show AGAGGGAGAAGGAGAAAGAGAGGGAGAAG	A A	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02818.hp1 HG01109.hp2 HG02818.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0011 a0006c0006t0011	a0006c0006t0011g0173 a0006c0006t0011g0184 a0006c0006t0011g0173 a0006c0006t0011g0184	2	328	0.0061	-28	c.-12 others(45): Show c.-12-6328_-12-6301delAGGAGAAAGAGAGGGAGAAGGAGGGAGA	OR1F1	ENSG00000168124.3	transcript	ENST00000304646.3	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr16	TogoVar
OR2AG1_chr11_6778020_6796558	6779167	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01074.hp1 HG01175.hp1 others(9): Show HG00735.hp2 HG01074.hp1 HG01175.hp1 HG01192.hp2 HG01928.hp1 HG01928.hp2 HG01934.hp2 HG01952.hp1 HG01978.hp2 HG02293.hp2 HG02300.hp2 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0007 a0001c0001t0011 others(2): Show a0001c0001t0004 a0001c0001t0007 a0001c0001t0011 a0001c0001t0020 a0001c0001t0084	a0001c0001t0004g0001 a0001c0001t0007g0001 a0001c0001t0011g0001 others(2): Show a0001c0001t0004g0001 a0001c0001t0007g0001 a0001c0001t0011g0001 a0001c0001t0020g0001 a0001c0001t0084g0001	12	468	0.0256	-28	c.-43 others(39): Show c.-4324_-4297delATATATATATATATATATATATATATAT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3852		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779196	ATATATAT others(21): Show ATATATATATATATATATATATATTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0004 a0001c0001t0006g0004	1	468	0.0021	-28	c.-42 others(39): Show c.-4295_-4268delTATATATATATATATATATATATTTTTT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3823		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779198	ATATATAT others(21): Show ATATATATATATATATATATATTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp1 NA18939.hp1 HG02723.hp1 NA18939.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0078 a0003c0003t0017 a0001c0001t0078 a0003c0003t0017	a0001c0001t0078g0004 a0003c0003t0017g0004 a0001c0001t0078g0004 a0003c0003t0017g0004	2	468	0.0043	-28	c.-42 others(39): Show c.-4293_-4266delTATATATATATATATATATATTTTTTTT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3821		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779200	ATATATAT others(21): Show ATATATATATATATATATATTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01255.hp1 HG01346.hp1 others(7): Show HG01123.hp2 HG01255.hp1 HG01346.hp1 HG02258.hp2 HG02735.hp1 HG02896.hp1 NA18951.hp2 NA18988.hp2 NA19063.hp1 NA20805.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0004 a0001c0001 a0003c0003 a0004c0004	a0001c0001t0006 a0001c0001t0008 a0001c0001t0014 others(2): Show a0001c0001t0006 a0001c0001t0008 a0001c0001t0014 a0003c0003t0006 a0004c0004t0038	a0001c0001t0006g0004 a0001c0001t0008g0004 a0001c0001t0014g0004 others(2): Show a0001c0001t0006g0004 a0001c0001t0008g0004 a0001c0001t0014g0004 a0003c0003t0006g0004 a0004c0004t0038g0001	10	468	0.0214	-28	c.-42 others(39): Show c.-4291_-4264delTATATATATATATATATATTTTTTTTTT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3819		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779204	ATATATAT others(21): Show ATATATATATATATATTTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0001 a0001c0001t0003g0001	1	468	0.0021	-28	c.-42 others(39): Show c.-4287_-4260delTATATATATATATATTTTTTTTTTTTTT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3815		chr11	TogoVar
OR2AG1_chr11_6778020_6796558	6779206	ATATATAT others(21): Show ATATATATATATATTTTTTTTTTTTTTTT	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00733.hp1 HG00738.hp1 HG01109.hp1 others(5): Show HG00733.hp1 HG00738.hp1 HG01109.hp1 HG01123.hp1 HG01515.hp1 HG01515.hp2 HG01517.hp2 HG03225.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0003 a0001c0001t0021 a0001c0001t0067 others(2): Show a0001c0001t0003 a0001c0001t0021 a0001c0001t0067 a0002c0002t0002 a0004c0004t0032	a0001c0001t0003g0001 a0001c0001t0021g0001 a0001c0001t0067g0001 others(2): Show a0001c0001t0003g0001 a0001c0001t0021g0001 a0001c0001t0067g0001 a0002c0002t0002g0002 a0004c0004t0032g0006	8	468	0.0171	-28	c.-42 others(39): Show c.-4285_-4258delTATATATATATATTTTTTTTTTTTTTTT	OR2AG1	ENSG00000279486.6	transcript	ENST00000641258.1	protein_coding		3813		chr11	TogoVar
OR2M3_chr1_248192265_248217925	248213481	GTATATAT others(21): Show GTATATATATATATGTATATATATATTTA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 NA18906.hp1 HG03516.hp2 NA18906.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0031 a0001c0002t0031	a0001c0002t0031g0002 a0001c0002t0031g0002	2	410	0.0049	-28	c.94 others(39): Show c.9476_*9503delTATATATATATATGTATATATATATTTA	OR2M3	ENSG00000228198.3	transcript	ENST00000641626.1	protein_coding		557		chr1	TogoVar
OR2T11_chr1_248618557_248640091	248637871	CAGACAGG others(21): Show CAGACAGGAAGGACTCATGGTCACATGTT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18946.hp1 NA18946.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0003	1	314	0.0032	-28	c.-30 others(39): Show c.-3006_-2979delAACATGTGACCATGAGTCCTTCCTGTCT	OR2T11	ENSG00000279301.5	transcript	ENST00000641193.1	protein_coding		2781		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578979	TATATATA others(21): Show TATATATATATATATATATATACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	314	0.0032	-28	c.-42 others(39): Show c.-4250_-4223delGTGTGTGTATATATATATATATATATAT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		4223		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578981	TATATATA others(21): Show TATATATATATATATATATACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	314	0.0032	-28	c.-42 others(39): Show c.-4252_-4225delGTGTGTGTGTATATATATATATATATAT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		4225		chr1	TogoVar
OR2T34_chr1_248568801_248579757	248578983	TATATATA others(21): Show TATATATATATATATATACACACACACAC	T T	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	314	0.0032	-28	c.-42 others(39): Show c.-4254_-4227delGTGTGTGTGTGTATATATATATATATAT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		4227		chr1	TogoVar
OR2Z1_chr19_8716634_8737160	8723968	TTGTGTGT others(21): Show TTGTGTGTGTGTGTGTGTGTGTGTGTGTG	T T	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG02027.hp1 HG02074.hp2 others(2): Show HG00558.hp1 HG02027.hp1 HG02074.hp2 NA18977.hp2 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0039 a0001c0001t0004g0056 a0001c0001t0004g0129 others(1): Show a0001c0001t0004g0039 a0001c0001t0004g0056 a0001c0001t0004g0129 a0001c0001t0004g0130	5	438	0.0114	-28	c.-17 others(45): Show c.-170+834_-170+861delGTGTGTGTGTGTGTGTGTGTGTGTGTGT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4C16_chr11_55567128_55578060	55575344	TTGTTAAT others(21): Show TTGTTAATCTGACACAGAGATCCATATGC	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	440	0.0023	-28	c.22 others(39): Show c.2285_*2312delTGTTAATCTGACACAGAGATCCATATGC	OR4C16	ENSG00000279514.2	transcript	ENST00000623907.1	protein_coding		2285		chr11	TogoVar
OR4E2_chr14_21648835_21672642	21657440	TTTCCTTC others(21): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01952.hp1 HG02451.hp1 others(1): Show HG01109.hp2 HG01952.hp1 HG02451.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0001 a0001c0002t0008 a0001c0003t0001 a0001c0002t0001 a0001c0002t0008 a0001c0003t0001	a0001c0002t0001g0229 a0001c0002t0008g0060 a0001c0003t0001g0243 a0001c0002t0001g0229 a0001c0002t0008g0060 a0001c0003t0001g0243	4	458	0.0087	-28	c.-10 others(45): Show c.-103+891_-103+918delCTTCCTTCCTTCCTTCCTTCCTTCCTTC	OR4E2	ENSG00000221977.3	transcript	ENST00000641524.1	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr14	TogoVar
OR4M2_chr15_22075527_22086610	22077327	CATATATA others(21): Show CATATATATATATATATATATATATATAT	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0007 a0007	a0007c0007 a0007c0007	a0007c0007t0001 a0007c0007t0001	a0007c0007t0001g0000 a0007c0007t0001g0000	1	50	0.0200	-28	c.-32 others(39): Show c.-3297_-3270delATATATATATATATATATATATATATAT	OR4M2	ENSG00000274102.3	transcript	ENST00000614722.3	protein_coding		3199		chr15	TogoVar
OR4Q3_chr14_19738571_19754469	19749847	CTTCTTTC others(21): Show CTTCTTTCTTTCTTTCTTTCTTTCTTTCT	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01928.hp2 HG01928.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0015 a0002c0002t0001g0015	1	276	0.0036	-28	c.14 others(39): Show c.1479_*1506delTTCTTTCTTTCTTTCTTTCTTTCTTTCT	OR4Q3	ENSG00000182652.4	transcript	ENST00000642117.2	protein_coding		379		chr14	TogoVar
OR51L1_chr11_4989851_5010536	4996692	TCTTTCTT others(21): Show TCTTTCTTTTCCTTCCTTCCTTTCTTTTC	T T	intron_variant intron_variant	MODIFIER	HG03098.hp2 NA19030.hp1 HG03098.hp2 NA19030.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0010 a0005c0006t0010	a0005c0006t0010g0084 a0005c0006t0010g0085 a0005c0006t0010g0084 a0005c0006t0010g0085	2	470	0.0043	-28	c.-26 others(45): Show c.-261-789_-261-762delCTTTCTTTTCCTTCCTTCCTTTCTTTTC	OR51L1	ENSG00000176798.3	transcript	ENST00000641819.1	protein_coding	1/2			chr11	TogoVar
OR51L1_chr11_4989851_5010536	4996693	CTTTCTTT others(21): Show CTTTCTTTTCCTTCCTTCCTTTCTTTTCT	C C	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0010 a0005c0006t0010	a0005c0006t0010g0081 a0005c0006t0010g0081	1	470	0.0021	-28	c.-26 others(45): Show c.-261-781_-261-754delTCCTTCCTTCCTTTCTTTTCTTTTCTTT	OR51L1	ENSG00000176798.3	transcript	ENST00000641819.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR5AP2_chr11_56636489_56647439	56643277	AGAAGGAA others(21): Show AGAAGGAAGGAAGGAAGGAAGGAAGGAAG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00639.hp1 others(34): Show HG00099.hp2 HG00323.hp1 HG00639.hp1 HG00642.hp2 HG00738.hp2 HG00741.hp2 HG01106.hp1 HG01243.hp1 HG01256.hp1 HG01261.hp1 HG01358.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG02055.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02647.hp1 HG02723.hp2 HG02886.hp2 HG02895.hp1 HG02976.hp2 HG03041.hp1 HG03209.hp2 HG03225.hp2 HG03239.hp1 HG03516.hp2 HG03710.hp1 NA18522.hp2 NA19240.hp1 NA20129.hp2 NA20752.hp2 NA20805.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0000 a0002c0002t0000 a0001c0001t0000 a0002c0002t0000	a0001c0001t0000g0000 a0002c0002t0000g0000 a0001c0001t0000g0000 a0002c0002t0000g0000	37	438	0.0845	-28	c.-86 others(37): Show c.-866_-839delCTTCCTTCCTTCCTTCCTTCCTTCCTTC	OR5AP2	ENSG00000172464.4	transcript	ENST00000544374.3	protein_coding		839		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815753	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp1 HG01517.hp1 HG01515.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	434	0.0046	-28	c.-38 others(39): Show c.-3876_-3849delTCTCTCTCTCTCTCTCTCTCTATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		3876		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815757	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0000 a0003c0003t0000	a0003c0003t0000g0000 a0003c0003t0000g0000	1	434	0.0023	-28	c.-38 others(39): Show c.-3872_-3845delTCTCTCTCTCTCTCTCTATATATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		3872		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815759	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0000 a0001c0006t0000	a0001c0006t0000g0000 a0001c0006t0000g0000	1	434	0.0023	-28	c.-38 others(39): Show c.-3870_-3843delTCTCTCTCTCTCTCTATATATATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		3870		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55815761	CTCTCTCT others(21): Show CTCTCTCTCTCTCTATATATATATATATA	C C	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0000 a0001c0006t0000	a0001c0006t0000g0000 a0001c0006t0000g0000	1	434	0.0023	-28	c.-38 others(39): Show c.-3868_-3841delTCTCTCTCTCTCTATATATATATATATA	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		3868		chr11	TogoVar
OR5H6_chr3_98259244_98270356	98267367	GTATATAT others(21): Show GTATATATATATATATATATATATATATA	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00558.hp1 HG00621.hp2 others(49): Show HG00323.hp2 HG00558.hp1 HG00621.hp2 HG01123.hp2 HG01175.hp1 HG01346.hp1 HG02074.hp1 HG02083.hp2 HG02132.hp2 HG02717.hp1 HG02809.hp1 HG02886.hp1 HG02895.hp2 HG02897.hp1 HG02970.hp1 HG03139.hp1 HG03139.hp2 HG03540.hp1 HG03579.hp1 HG03834.hp1 HG03927.hp1 NA18945.hp1 NA18953.hp1 NA18959.hp2 NA18965.hp2 NA18967.hp2 NA18975.hp2 NA18981.hp1 NA18983.hp1 NA18984.hp2 NA18988.hp1 NA18988.hp2 NA18993.hp2 NA18995.hp2 NA18998.hp2 NA18999.hp1 NA18999.hp2 NA19002.hp2 NA19004.hp2 NA19005.hp2 NA19007.hp2 NA19009.hp1 NA19054.hp1 NA19060.hp1 NA19075.hp1 NA19080.hp2 NA19085.hp1 NA19088.hp2 NA19089.hp2 NA19091.hp2 NA19240.hp1 NA20129.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0007	a0001c0001 a0003c0003 a0004c0004 others(1): Show a0001c0001 a0003c0003 a0004c0004 a0007c0006	a0001c0001t0002 a0003c0003t0001 a0004c0004t0004 others(1): Show a0001c0001t0002 a0003c0003t0001 a0004c0004t0004 a0007c0006t0002	a0001c0001t0002g0000 a0003c0003t0001g0000 a0004c0004t0004g0000 others(1): Show a0001c0001t0002g0000 a0003c0003t0001g0000 a0004c0004t0004g0000 a0007c0006t0002g0000	52	442	0.1177	-28	c.21 others(39): Show c.2106_*2133delTATATATATATATATATATATATATATA	OR5H6	ENSG00000230301.6	transcript	ENST00000615035.3	protein_coding		2012		chr3	TogoVar
OR5L1_chr11_55806367_55817476	55815753	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTCTCTATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01515.hp2 HG01517.hp1 HG01515.hp2 HG01517.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0000 a0002c0002t0001g0000	2	440	0.0046	-28	c.33 others(39): Show c.3352_*3379delTCTCTCTCTCTCTCTCTCTCTATATATA	OR5L1	ENSG00000279395.3	transcript	ENST00000625203.2	protein_coding		3278		chr11	TogoVar
OR5L1_chr11_55806367_55817476	55815757	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTCTATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	440	0.0023	-28	c.33 others(39): Show c.3356_*3383delTCTCTCTCTCTCTCTCTATATATATATA	OR5L1	ENSG00000279395.3	transcript	ENST00000625203.2	protein_coding		3282		chr11	TogoVar
OR5L1_chr11_55806367_55817476	55815759	CTCTCTCT others(21): Show CTCTCTCTCTCTCTCTATATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0005 a0006c0005t0005	a0006c0005t0005g0000 a0006c0005t0005g0000	1	440	0.0023	-28	c.33 others(39): Show c.3358_*3385delTCTCTCTCTCTCTCTATATATATATATA	OR5L1	ENSG00000279395.3	transcript	ENST00000625203.2	protein_coding		3284		chr11	TogoVar
OR5L1_chr11_55806367_55817476	55815761	CTCTCTCT others(21): Show CTCTCTCTCTCTCTATATATATATATATA	C C	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0005 a0006c0005t0005	a0006c0005t0005g0000 a0006c0005t0005g0000	1	440	0.0023	-28	c.33 others(39): Show c.3360_*3387delTCTCTCTCTCTCTATATATATATATATA	OR5L1	ENSG00000279395.3	transcript	ENST00000625203.2	protein_coding		3286		chr11	TogoVar
OR6A2_chr11_6786736_6804689	6801872	GCCATCAT others(21): Show GCCATCATATCCCCTGTGACCTGCATGTA	G G	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0074 a0001c0003t0003g0074	1	460	0.0022	-28	c.-25 others(39): Show c.-2533_-2506delTACATGCAGGTCACAGGGGATATGATGG	OR6A2	ENSG00000184933.6	transcript	ENST00000641196.1	protein_coding		2184		chr11	TogoVar
OR6B3_chr2_240039571_240058521	240042004	ATGAAGAG others(21): Show ATGAAGAGGCATGGACGAAGGGCCGTGGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG01074.hp1 HG01081.hp2 others(8): Show HG00140.hp2 HG01074.hp1 HG01081.hp2 HG02083.hp2 HG02723.hp1 HG02896.hp2 HG02897.hp2 HG02965.hp2 HG03486.hp2 HG03831.hp1 NA18999.hp1	a0002 a0004 a0008 a0002 a0004 a0008	a0002c0002 a0004c0009 a0008c0007 a0002c0002 a0004c0009 a0008c0007	a0002c0002t0002 a0002c0002t0005 a0004c0009t0001 others(1): Show a0002c0002t0002 a0002c0002t0005 a0004c0009t0001 a0008c0007t0009	a0002c0002t0002g0005 a0002c0002t0002g0018 a0002c0002t0005g0015 others(4): Show a0002c0002t0002g0005 a0002c0002t0002g0018 a0002c0002t0005g0015 a0002c0002t0005g0100 a0004c0009t0001g0096 a0004c0009t0001g0127 a0008c0007t0009g0042	11	444	0.0248	-28	c.30 others(39): Show c.3045_*3072delCCCACGGCCCTTCGTCCATGCCTCTTCA	OR6B3	ENSG00000178586.7	transcript	ENST00000641019.2	protein_coding		2566		chr2	TogoVar
OR6B3_chr2_240039571_240058521	240042187	GGAAGGGC others(21): Show GGAAGGGCCGTGGGTGAAGAGGCATGGAC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0008 a0008	a0008c0007 a0008c0007	a0008c0007t0009 a0008c0007t0009	a0008c0007t0009g0042 a0008c0007t0009g0042	1	444	0.0023	-28	c.28 others(39): Show c.2862_*2889delGTCCATGCCTCTTCACCCACGGCCCTTC	OR6B3	ENSG00000178586.7	transcript	ENST00000641019.2	protein_coding		2383		chr2	TogoVar
OR6B3_chr2_240039571_240058521	240042327	GGAAGGGC others(21): Show GGAAGGGCCGTGGGTGAAGAGGCATGGAC	G G	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02723.hp1 HG02896.hp2 NA18983.hp1 HG02723.hp1 HG02896.hp2 NA18983.hp1	a0002 a0008 a0002 a0008	a0002c0002 a0008c0007 a0002c0002 a0008c0007	a0002c0002t0002 a0002c0002t0005 a0008c0007t0009 a0002c0002t0002 a0002c0002t0005 a0008c0007t0009	a0002c0002t0002g0002 a0002c0002t0005g0100 a0008c0007t0009g0042 a0002c0002t0002g0002 a0002c0002t0005g0100 a0008c0007t0009g0042	3	444	0.0068	-28	c.27 others(39): Show c.2722_*2749delGTCCATGCCTCTTCACCCACGGCCCTTC	OR6B3	ENSG00000178586.7	transcript	ENST00000641019.2	protein_coding		2243		chr2	TogoVar

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Search Results (Total: 7045 hits)