Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRP1B_chr2_140226423_142136016	141467094	ATATATGT others(23): Show ATATATGTGTATATATATATATATATATATC	A A	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01884.hp1 HG02630.hp1 others(4): Show HG01261.hp2 HG01884.hp1 HG02630.hp1 HG02723.hp2 HG02922.hp1 HG03225.hp1 NA18522.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0005 a0001c0010 others(4): Show a0001c0002 a0001c0005 a0001c0010 a0001c0025 a0001c0026 a0001c0028 a0002c0004	a0001c0002t0010 a0001c0005t0008 a0001c0010t0011 others(4): Show a0001c0002t0010 a0001c0005t0008 a0001c0010t0011 a0001c0025t0005 a0001c0026t0001 a0001c0028t0002 a0002c0004t0004	a0001c0002t0010g0022 a0001c0005t0008g0010 a0001c0010t0011g0028 others(4): Show a0001c0002t0010g0022 a0001c0005t0008g0010 a0001c0010t0011g0028 a0001c0025t0005g0018 a0001c0026t0001g0025 a0001c0028t0002g0020 a0002c0004t0004g0006	7	28	0.2500	-30	c.343 others(49): Show c.343+13272_343+13301delGATATATATATATATATATATACACA TATA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141810095	AAAAGAAA others(23): Show AAAAGAAAGAAAGAAAGAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0023 a0001c0023	a0001c0023t0003 a0001c0023t0003	a0001c0023t0003g0001 a0001c0023t0003g0001	1	28	0.0357	-30	c.205 others(45): Show c.205+154_205+183delCTTTCTTTCTTTTTCTTTCTTTCTTTCTTT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141894635	TTAGATCT others(23): Show TTAGATCTAGATCTAGATCTAGATCTAGATC	T T	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0009 a0001c0015t0009	a0001c0015t0009g0017 a0001c0015t0009g0017	1	28	0.0357	-30	c.83- others(47): Show c.83-84264_83-84235delGATCTAGATCTAGATCTAGATCTAGATC TA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	1/90			chr2	TogoVar
LRP2_chr2_169122109_169367534	169299141	AAGAAAGA others(23): Show AAGAAAGAAAGAAAGAAAAAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0003 a0003	a0003c0023 a0003c0023	a0003c0023t0001 a0003c0023t0001	a0003c0023t0001g0062 a0003c0023t0001g0062	1	250	0.0040	-30	c.428 others(47): Show c.428-4461_428-4432delCTTTCTTTCTTTTTTTCTTTCTTTCTTT CT	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	4/78			chr2	TogoVar
LRP5_chr11_68307591_68454275	68443559	ATATATAT others(23): Show ATATATATATATATATATATATATATATTTT	A A	intron_variant intron_variant	MODIFIER	NA18988.hp2 NA18988.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0061 a0002c0003t0001g0061	1	212	0.0047	-30	c.448 others(49): Show c.4489-2875_4489-2846delATATATATATATATATATATATATAT TTTT	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	21/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRP5_chr11_68307591_68454275	68443561	ATATATAT others(23): Show ATATATATATATATATATATATATATTTTTT	A A	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01981.hp1 HG01978.hp2 HG01981.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0104 a0001c0001t0001g0100 a0001c0001t0001g0104	2	212	0.0094	-30	c.448 others(49): Show c.4489-2873_4489-2844delATATATATATATATATATATATATTT TTTT	LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	21/22		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC37A3_chr17_64849130_64924478	64866535	CATATATA others(23): Show CATATATATACATATATACACGTACATATAT	C C	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG03225.hp1 HG01109.hp2 HG03225.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0002 a0003c0003t0001 a0002c0002t0002 a0003c0003t0001	a0002c0002t0002g0098 a0003c0003t0001g0127 a0002c0002t0002g0098 a0003c0003t0001g0127	2	138	0.0145	-30	c.305 others(49): Show c.3053+1897_3053+1926delATATATGTACGTGTATATATGTATAT ATAT	LRRC37A3	ENSG00000176809.11	transcript	ENST00000584306.6	protein_coding	10/14			chr17	TogoVar
LRRC37B_chr17_32002383_32058487	32039494	ATATATAT others(23): Show ATATATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0016 a0003c0003t0001g0016	1	242	0.0041	-30	c.187 others(49): Show c.1877+3859_1877+3888delATATATATATATATATATATATATAT GTAT	LRRC37B	ENSG00000185158.13	transcript	ENST00000543378.7	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr17	TogoVar
LRRC38_chr1_13469973_13519003	13481758	TTTCCCTC others(23): Show TTTCCCTCTCTCTCCCTCTCTCCCTCTCTCC	T T	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00735.hp1 HG01106.hp2 others(40): Show HG00642.hp1 HG00735.hp1 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01175.hp1 HG01243.hp2 HG01433.hp2 HG01516.hp2 HG01517.hp1 HG02055.hp1 HG02148.hp2 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02559.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG03130.hp1 HG03139.hp1 HG03139.hp2 HG03453.hp2 HG03471.hp2 HG03486.hp2 HG03540.hp1 HG04184.hp2 HG06807.hp1 NA18522.hp1 NA18522.hp2 NA18998.hp2 NA19030.hp1 NA19087.hp1 NA19090.hp2 NA20129.hp2 NA20300.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0005 a0001c0010 others(3): Show a0001c0001 a0001c0005 a0001c0010 a0002c0002 a0002c0003 a0003c0004	a0001c0001t0001 a0001c0001t0010 a0001c0001t0020 others(8): Show a0001c0001t0001 a0001c0001t0010 a0001c0001t0020 a0001c0005t0001 a0001c0010t0014 a0002c0002t0001 a0002c0002t0002 a0002c0002t0004 a0002c0003t0001 a0002c0003t0003 a0003c0004t0007	a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0225 others(39): Show a0001c0001t0001g0114 a0001c0001t0001g0152 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0233 a0001c0001t0001g0234 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0266 a0001c0001t0001g0291 a0001c0001t0001g0299 a0001c0001t0001g0312 a0001c0001t0001g0313 a0001c0001t0001g0340 a0001c0001t0001g0342 a0001c0001t0001g0343 a0001c0001t0001g0347 a0001c0001t0001g0356 a0001c0001t0001g0374 a0001c0001t0001g0378 a0001c0001t0001g0382 a0001c0001t0001g0385 a0001c0001t0001g0402 a0001c0001t0001g0409 a0001c0001t0001g0415 a0001c0001t0001g0417 a0001c0001t0001g0420 a0001c0001t0010g0428 a0001c0001t0010g0429 a0001c0001t0020g0298 a0001c0005t0001g0077 a0001c0010t0014g0423 a0002c0002t0001g0376 a0002c0002t0002g0209 a0002c0002t0004g0140 a0002c0002t0004g0287 a0002c0003t0001g0017 a0002c0003t0001g0392 a0002c0003t0001g0418 a0002c0003t0003g0386 a0003c0004t0007g0346	43	448	0.0960	-30	c.632 others(47): Show c.632-5689_632-5660delGGAGAGAGGGAGAGAGGGAGAGAGAGGG AA	LRRC38	ENSG00000162494.6	transcript	ENST00000376085.4	protein_coding	1/1			chr1	TogoVar
LRRC3B_chr3_26617772_26715776	26636942	CTTTCTTT others(23): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	C C	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0240 a0001c0001t0001g0240	1	370	0.0027	-30	c.-16 others(51): Show c.-161+13707_-161+13736delTTCTTTCTTTCTTTCTTTCTTTCT TTCTTT	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC49_chr15_70887826_71058658	70972727	ATTAAGTT others(23): Show ATTAAGTTGATCTTCAGTCTCTGATATCCTT	A A	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0028 a0002c0002t0001g0028	1	262	0.0038	-30	c.922 others(47): Show c.922-7372_922-7343delTAAGTTGATCTTCAGTCTCTGATATCCT TT	LRRC49	ENSG00000137821.12	transcript	ENST00000260382.10	protein_coding	9/15		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRC4B_chr19_50511892_50573435	50520221	AAAAAAAA others(23): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAG	A A	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp2 HG00423.hp1 others(71): Show HG00099.hp2 HG00280.hp2 HG00423.hp1 HG00438.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp2 HG01123.hp1 HG01168.hp2 HG01243.hp2 HG01255.hp1 HG01256.hp2 HG01934.hp2 HG01943.hp1 HG01975.hp2 HG01981.hp2 HG02004.hp2 HG02015.hp1 HG02071.hp1 HG02074.hp2 HG02129.hp2 HG02132.hp2 HG02135.hp1 HG02145.hp2 HG02155.hp2 HG02273.hp1 HG02523.hp1 HG02559.hp2 HG03195.hp1 HG03225.hp1 HG03490.hp2 HG03540.hp1 HG03654.hp1 HG03688.hp1 HG03927.hp2 HG03942.hp1 HG04184.hp1 HG04199.hp2 HG04228.hp1 HG06807.hp1 NA18939.hp2 NA18945.hp2 NA18948.hp1 NA18951.hp2 NA18952.hp1 NA18959.hp1 NA18964.hp1 NA18966.hp2 NA18983.hp1 NA18983.hp2 NA18986.hp2 NA18990.hp1 NA18990.hp2 NA18992.hp2 NA18994.hp1 NA18999.hp1 NA19004.hp2 NA19007.hp1 NA19011.hp2 NA19012.hp1 NA19056.hp1 NA19065.hp1 NA19066.hp2 NA19077.hp2 NA19079.hp2 NA19084.hp2 NA19085.hp1 NA19085.hp2 NA19090.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0005c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0011 a0001c0001t0012 a0001c0003t0002 a0001c0003t0004 a0002c0002t0001 a0005c0007t0001	a0001c0001t0001g0094 a0001c0001t0001g0111 a0001c0001t0001g0113 others(71): Show a0001c0001t0001g0094 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0159 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0346 a0001c0001t0002g0016 a0001c0001t0002g0018 a0001c0001t0002g0030 a0001c0001t0002g0051 a0001c0001t0002g0074 a0001c0001t0002g0075 a0001c0001t0002g0076 a0001c0001t0002g0079 a0001c0001t0002g0103 a0001c0001t0002g0106 a0001c0001t0002g0117 a0001c0001t0002g0122 a0001c0001t0002g0126 a0001c0001t0002g0127 a0001c0001t0002g0132 a0001c0001t0002g0134 a0001c0001t0002g0147 a0001c0001t0002g0149 a0001c0001t0002g0155 a0001c0001t0002g0156 a0001c0001t0002g0164 a0001c0001t0002g0178 a0001c0001t0002g0183 a0001c0001t0002g0184 a0001c0001t0002g0191 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0194 a0001c0001t0002g0198 a0001c0001t0002g0200 a0001c0001t0002g0207 a0001c0001t0002g0212 a0001c0001t0002g0218 a0001c0001t0002g0219 a0001c0001t0002g0223 a0001c0001t0002g0224 a0001c0001t0002g0226 a0001c0001t0002g0227 a0001c0001t0002g0233 a0001c0001t0002g0241 a0001c0001t0002g0247 a0001c0001t0002g0261 a0001c0001t0002g0280 a0001c0001t0002g0285 a0001c0001t0002g0291 a0001c0001t0002g0292 a0001c0001t0002g0295 a0001c0001t0002g0296 a0001c0001t0002g0299 a0001c0001t0002g0301 a0001c0001t0002g0333 a0001c0001t0002g0334 a0001c0001t0002g0336 a0001c0001t0002g0337 a0001c0001t0002g0338 a0001c0001t0002g0343 a0001c0001t0004g0351 a0001c0001t0004g0353 a0001c0001t0004g0356 a0001c0001t0011g0217 a0001c0001t0012g0055 a0001c0003t0002g0283 a0001c0003t0004g0352 a0002c0002t0001g0022 a0002c0002t0001g0024 a0005c0007t0001g0325	74	360	0.2056	-30	c.298 others(45): Show c.298-836_298-807delCTTCTTTTTTTTTTTTTTTTTTTTTTTTTT	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40630330	CTCTTCTT others(23): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	C C	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02965.hp1 HG03540.hp1 others(2): Show HG01074.hp1 HG02965.hp1 HG03540.hp1 NA18989.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0037 others(2): Show a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0002t0001g0029	5	48	0.1042	-30	c.-27 others(51): Show c.-270+17782_-270+17811delAGAAGAAGAAGAAGAAGAAGAAGA AGAAGA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40665323	AAAATATA others(23): Show AAAATATATATATATATATATATATATATAT	A A	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp2 NA20300.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0028 a0001c0001t0001g0015 a0001c0001t0001g0028	2	48	0.0417	-30	c.-40 others(51): Show c.-406-17075_-406-17046delATATATATATATATATATATATAT ATATTT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6			chr11	TogoVar
LRRC53_chr1_74464376_74517611	74500603	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C C	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp1 HG02965.hp2 others(1): Show HG02895.hp2 HG02897.hp1 HG02965.hp2 HG03239.hp2	a0001 a0003 a0020 a0001 a0003 a0020	a0001c0001 a0003c0004 a0020c0019 a0001c0001 a0003c0004 a0020c0019	a0001c0001t0001 a0003c0004t0001 a0020c0019t0002 a0001c0001t0001 a0003c0004t0001 a0020c0019t0002	a0001c0001t0001g0196 a0003c0004t0001g0012 a0020c0019t0002g0052 a0001c0001t0001g0196 a0003c0004t0001g0012 a0020c0019t0002g0052	4	342	0.0117	-30	c.-27 others(49): Show c.-27+11893_-27+11922delTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC63_chr13_46206928_46282115	46239262	AGAGAAAA others(23): Show AGAGAAAATCCAAATAAACACAATTAGAAAT	A A	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG03490.hp1 HG03492.hp1 HG01346.hp1 HG03490.hp1 HG03492.hp1	a0005 a0005	a0005c0012 a0005c0012	a0005c0012t0007 a0005c0012t0007	a0005c0012t0007g0027 a0005c0012t0007g0155 a0005c0012t0007g0027 a0005c0012t0007g0155	3	386	0.0078	-30	c.990 others(47): Show c.990+4916_990+4945delGAAAATCCAAATAAACACAATTAGAAAT GA	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	5/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC75A_chr17_16436577_16497193	16453304	ACACACAC others(23): Show ACACACACGCACACACGCACACACGCACACG	A A	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00323.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0041 a0001c0002t0001g0041	1	342	0.0029	-30	c.376 others(47): Show c.376-5374_376-5345delCGTGTGCGTGTGTGCGTGTGTGCGTGTG TG	LRRC75A	ENSG00000181350.12	transcript	ENST00000470794.2	protein_coding	2/3			chr17	TogoVar
LRRC7_chr1_69562922_70149364	69608842	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTCTCTCTCTATATA	C C	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0099 a0001c0001t0001g0099	1	108	0.0093	-30	c.2+4 others(45): Show c.2+40203_2+40232delCTCTCTCTCTCTCTCTCTCTCTCTATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608844	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATA	C C	intron_variant intron_variant	MODIFIER	HG02572.hp2 NA19240.hp2 HG02572.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0068 a0001c0001t0016 a0001c0001t0068	a0001c0001t0016g0032 a0001c0001t0068g0069 a0001c0001t0016g0032 a0001c0001t0068g0069	2	108	0.0185	-30	c.2+4 others(45): Show c.2+40205_2+40234delCTCTCTCTCTCTCTCTCTCTCTATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608846	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTCTCTATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02486.hp1 HG02258.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0064 a0001c0001t0032 a0001c0001t0064	a0001c0001t0032g0049 a0001c0001t0064g0026 a0001c0001t0032g0049 a0001c0001t0064g0026	2	108	0.0185	-30	c.2+4 others(45): Show c.2+40207_2+40236delCTCTCTCTCTCTCTCTCTCTATATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608848	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTCTATATATATATA	C C	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0049 a0001c0004t0049	a0001c0004t0049g0033 a0001c0004t0049g0033	1	108	0.0093	-30	c.2+4 others(45): Show c.2+40209_2+40238delCTCTCTCTCTCTCTCTCTATATATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69608850	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTATATATATATATA	C C	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0079 a0001c0002t0079	a0001c0002t0079g0068 a0001c0002t0079g0068	1	108	0.0093	-30	c.2+4 others(45): Show c.2+40211_2+40240delCTCTCTCTCTCTCTCTATATATATATATAT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69781733	AAGAGAGA others(23): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	A A	intron_variant intron_variant	MODIFIER	NA19080.hp1 NA19080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0106 a0001c0001t0042g0106	1	108	0.0093	-30	c.304 others(49): Show c.304-10306_304-10277delGAGAGAGAGAGAGAGAGAGAGAGAGA GAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	3/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRIQ3_chr1_74021015_74203176	74060191	CTTCTTCT others(23): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTG	C C	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG02683.hp2 HG03654.hp2 others(1): Show HG00280.hp2 HG02683.hp2 HG03654.hp2 NA18940.hp2	a0001 a0007 a0017 a0001 a0007 a0017	a0001c0001 a0007c0007 a0017c0018 a0001c0001 a0007c0007 a0017c0018	a0001c0001t0002 a0007c0007t0001 a0017c0018t0002 a0001c0001t0002 a0007c0007t0001 a0017c0018t0002	a0001c0001t0002g0048 a0001c0001t0002g0052 a0007c0007t0001g0178 others(1): Show a0001c0001t0002g0048 a0001c0001t0002g0052 a0007c0007t0001g0178 a0017c0018t0002g0075	4	274	0.0146	-30	c.997 others(49): Show c.997+14440_997+14469delCAAGAAGAAGAAGAAGAAGAAGAAGA AGAA	LRRIQ3	ENSG00000162620.16	transcript	ENST00000354431.9	protein_coding	6/7			chr1	TogoVar
LRRK2_chr12_40219997_40374285	40282009	GCTTCCCT others(23): Show GCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC	G G	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01069.hp1 HG01081.hp1 others(18): Show HG00140.hp1 HG01069.hp1 HG01081.hp1 HG01243.hp2 HG01256.hp1 HG01358.hp2 HG02257.hp2 HG02280.hp1 HG02300.hp1 HG02451.hp1 HG02559.hp1 HG02572.hp2 HG02647.hp2 HG02717.hp1 HG02723.hp1 HG02965.hp2 HG03225.hp1 HG03579.hp1 HG04228.hp2 NA19003.hp2 NA20300.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0003 a0002c0001 a0003c0004 a0001c0003 a0002c0001 a0003c0004	a0001c0003t0003 a0002c0001t0001 a0003c0004t0001 others(2): Show a0001c0003t0003 a0002c0001t0001 a0003c0004t0001 a0003c0004t0002 a0003c0004t0004	a0001c0003t0003g0137 a0002c0001t0001g0068 a0002c0001t0001g0069 others(18): Show a0001c0003t0003g0137 a0002c0001t0001g0068 a0002c0001t0001g0069 a0002c0001t0001g0073 a0002c0001t0001g0082 a0002c0001t0001g0083 a0002c0001t0001g0084 a0002c0001t0001g0088 a0002c0001t0001g0094 a0002c0001t0001g0099 a0002c0001t0001g0100 a0003c0004t0001g0288 a0003c0004t0002g0294 a0003c0004t0004g0112 a0003c0004t0004g0280 a0003c0004t0004g0289 a0003c0004t0004g0290 a0003c0004t0004g0291 a0003c0004t0004g0292 a0003c0004t0004g0293 a0003c0004t0004g0300	21	382	0.0550	-30	c.224 others(49): Show c.2242-1816_2242-1787delCCTTCCCTTCCCTTCCCTTCCCTTCC CTTC	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	18/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40282059	CCTTCCCT others(23): Show CCTTCCCTTCCCTTCCCTTCCCTTCCCTTCT	C C	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01496.hp2 HG01884.hp2 others(24): Show HG00597.hp1 HG01496.hp2 HG01884.hp2 HG02004.hp2 HG02698.hp1 HG02723.hp2 HG03471.hp1 HG03669.hp1 HG04199.hp1 NA18943.hp1 NA18950.hp2 NA18951.hp2 NA18956.hp1 NA18962.hp1 NA18970.hp1 NA18972.hp2 NA18983.hp2 NA18991.hp1 NA18992.hp2 NA18994.hp1 NA19011.hp1 NA19056.hp2 NA19074.hp1 NA19079.hp2 NA19082.hp2 NA19085.hp1 NA19090.hp1	a0004 a0007 a0009 a0004 a0007 a0009	a0004c0006 a0007c0012 a0007c0046 others(1): Show a0004c0006 a0007c0012 a0007c0046 a0009c0013	a0004c0006t0001 a0004c0006t0008 a0004c0006t0019 others(4): Show a0004c0006t0001 a0004c0006t0008 a0004c0006t0019 a0007c0012t0002 a0007c0012t0005 a0007c0046t0007 a0009c0013t0001	a0004c0006t0001g0329 a0004c0006t0001g0330 a0004c0006t0001g0332 others(23): Show a0004c0006t0001g0329 a0004c0006t0001g0330 a0004c0006t0001g0332 a0004c0006t0001g0337 a0004c0006t0001g0338 a0004c0006t0001g0339 a0004c0006t0001g0340 a0004c0006t0001g0346 a0004c0006t0001g0347 a0004c0006t0001g0348 a0004c0006t0001g0349 a0004c0006t0001g0355 a0004c0006t0008g0002 a0004c0006t0008g0344 a0004c0006t0008g0351 a0004c0006t0008g0356 a0004c0006t0008g0357 a0004c0006t0019g0360 a0007c0012t0002g0096 a0007c0012t0005g0343 a0007c0012t0005g0345 a0007c0012t0005g0350 a0007c0012t0005g0359 a0007c0046t0007g0308 a0009c0013t0001g0133 a0009c0013t0001g0135	27	382	0.0707	-30	c.224 others(49): Show c.2242-1808_2242-1779delTCCCTTCCCTTCCCTTCCCTTCTCTT CCCT	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	18/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRTM3_chr10_66921036_67106551	66957399	TATATATA others(23): Show TATATATATATATATGCATATATATATATGC	T T	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp1 others(26): Show HG00099.hp2 HG00140.hp2 HG00323.hp1 HG00741.hp2 HG01074.hp2 HG01099.hp1 HG01175.hp2 HG01261.hp1 HG01346.hp1 HG02257.hp1 HG02293.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02698.hp2 HG02818.hp1 HG02886.hp2 HG02895.hp2 HG02922.hp2 HG02976.hp1 HG03041.hp2 HG03139.hp1 HG03195.hp1 HG03225.hp1 HG03486.hp2 HG03540.hp1 HG03579.hp1 HG04115.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0003t0009 a0001c0005t0006	a0001c0001t0001g0005 a0001c0001t0001g0017 a0001c0001t0001g0018 others(26): Show a0001c0001t0001g0005 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0025 a0001c0001t0001g0060 a0001c0001t0001g0080 a0001c0001t0001g0124 a0001c0001t0001g0229 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0002g0023 a0001c0001t0002g0077 a0001c0001t0002g0078 a0001c0001t0002g0079 a0001c0001t0002g0081 a0001c0001t0002g0082 a0001c0001t0003g0259 a0001c0001t0003g0262 a0001c0001t0006g0001 a0001c0001t0006g0257 a0001c0001t0006g0258 a0001c0003t0009g0287 a0001c0003t0009g0288 a0001c0005t0006g0260	29	294	0.0986	-30	c.153 others(51): Show c.1536+28960_1536+28989delATGCATATATATATATGCATATAT ATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	77477893	AAAAGAAA others(23): Show AAAAGAAAGAAAAAGAAAGAAAGAAAGAAAG	A A	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0127 a0001c0001t0002g0127	1	128	0.0078	-30	c.155 others(51): Show c.1551+40395_1551+40424delCTTTCTTTCTTTCTTTCTTTTTCT TTCTTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSG1_chr3_194635791_194677191	194645505	CACACACA others(23): Show CACACACACACACACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0008 a0001c0003t0008	a0001c0003t0008g0186 a0001c0003t0008g0186	1	408	0.0025	-30	c.162 others(47): Show c.1623+629_1623+658delCTGTCTGTGTGTGTGTGTGTGTGTGTGT GT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645545	CACACACA others(23): Show CACACACACACACACACACACACACAGACAG	C C	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01891.hp1 HG01943.hp1 others(6): Show HG00741.hp2 HG01891.hp1 HG01943.hp1 HG02135.hp1 NA18747.hp1 NA18943.hp2 NA18965.hp1 NA19011.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0003 a0001c0001t0004 a0001c0001t0017 others(4): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0017 a0001c0001t0024 a0001c0003t0002 a0001c0003t0054 a0002c0002t0020	a0001c0001t0003g0303 a0001c0001t0004g0094 a0001c0001t0017g0071 others(6): Show a0001c0001t0003g0303 a0001c0001t0004g0094 a0001c0001t0017g0071 a0001c0001t0017g0085 a0001c0001t0017g0087 a0001c0001t0024g0093 a0001c0003t0002g0183 a0001c0003t0054g0182 a0002c0002t0020g0365	9	408	0.0221	-30	c.162 others(47): Show c.1623+589_1623+618delCTGTCTGTGTGTGTGTGTGTGTGTGTGT GT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSM8_chr7_118179164_118209035	118206968	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	T T	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG01978.hp1 HG01993.hp1 others(1): Show HG01243.hp2 HG01978.hp1 HG01993.hp1 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 others(1): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0011 a0001c0001t0101	a0001c0001t0001g0002 a0001c0001t0008g0001 a0001c0001t0011g0001 others(1): Show a0001c0001t0001g0002 a0001c0001t0008g0001 a0001c0001t0011g0001 a0001c0001t0101g0003	4	414	0.0097	-30	c.14 others(43): Show c.14967_*14996delTATATATATATATATATATATATATATATA	LSM8	ENSG00000128534.8	transcript	ENST00000249299.7	protein_coding		2934		chr7	TogoVar
LTB4R2_chr14_24305140_24317038	24306291	AGGATCAG others(23): Show AGGATCAGGGTTAAGCTAGAGAGGAAGCCCG	A A	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	408	0.0025	-30	c.-39 others(41): Show c.-3974_-3945delGGATCAGGGTTAAGCTAGAGAGGAAGCCCG	LTB4R2	ENSG00000213906.10	transcript	ENST00000533293.2	protein_coding		3848		chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564121	ATATTTAT others(23): Show ATATTTATATATATATTTATATATATATATT	A A	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0014 a0014	a0014c0032 a0014c0032	a0014c0032t0003 a0014c0032t0003	a0014c0032t0003g0183 a0014c0032t0003g0183	1	282	0.0036	-30	c.831 others(47): Show c.831-8458_831-8429delAATATATATATATAAATATATATATAAA TA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP4_chr19_40596369_40634818	40625252	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	T T	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG03195.hp2 HG02615.hp1 HG03195.hp2	a0007 a0007	a0007c0012 a0007c0012	a0007c0012t0002 a0007c0012t0002	a0007c0012t0002g0307 a0007c0012t0002g0314 a0007c0012t0002g0307 a0007c0012t0002g0314	2	338	0.0059	-30	c.383 others(47): Show c.3833-569_3833-540delATATATATATATATATATATATATATAT AT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP4_chr19_40596369_40634818	40625288	ATATATAT others(23): Show ATATATATATATATATATATATATATATATT	A A	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0205	1	338	0.0030	-30	c.383 others(47): Show c.3833-567_3833-538delATATATATATATATATATATATATATAT TT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTC4S_chr5_179788986_179801647	179799786	ACATGTCT others(23): Show ACATGTCTGATGCACAGGCAATGAGAACAGG	A A	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp1 HG02572.hp2 HG02818.hp1 others(6): Show HG02145.hp1 HG02572.hp2 HG02818.hp1 HG03041.hp1 HG03516.hp1 HG03540.hp1 NA18906.hp2 NA19030.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0013 a0001c0001t0001g0001 a0001c0001t0001g0013	9	418	0.0215	-30	c.33 others(41): Show c.3393_*3422delCATGTCTGATGCACAGGCAATGAGAACAGG	LTC4S	ENSG00000213316.10	transcript	ENST00000292596.15	protein_coding		3140		chr5	TogoVar
LTF_chr3_46430645_46469905	46441924	AGAGAGAG others(23): Show AGAGAGAGAGAGTGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00438.hp1 HG00544.hp1 others(78): Show HG00423.hp1 HG00438.hp1 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00673.hp2 HG01069.hp2 HG01071.hp2 HG01123.hp2 HG01168.hp1 HG01256.hp2 HG01258.hp2 HG01261.hp1 HG01516.hp2 HG01517.hp1 HG01952.hp1 HG02015.hp1 HG02015.hp2 HG02040.hp2 HG02080.hp2 HG02083.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp2 HG02145.hp2 HG02165.hp1 HG02273.hp2 HG02293.hp1 HG02486.hp2 HG02572.hp1 HG02698.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG03471.hp1 HG03486.hp2 HG03688.hp2 HG03834.hp1 HG03834.hp2 HG03942.hp1 HG04204.hp2 HG04228.hp2 NA18941.hp1 NA18944.hp2 NA18955.hp1 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18962.hp1 NA18966.hp2 NA18968.hp2 NA18973.hp2 NA18978.hp2 NA18979.hp1 NA18983.hp2 NA18987.hp1 NA18989.hp1 NA18991.hp1 NA18993.hp2 NA18995.hp2 NA18998.hp2 NA18999.hp2 NA19005.hp2 NA19007.hp2 NA19009.hp1 NA19011.hp1 NA19011.hp2 NA19056.hp2 NA19057.hp1 NA19064.hp2 NA19067.hp2 NA19072.hp2 NA19074.hp2 NA19077.hp2 NA19085.hp2 NA19087.hp1 NA19088.hp1 NA20129.hp1 NA20805.hp1	a0001 a0004 a0005 others(3): Show a0001 a0004 a0005 a0006 a0009 a0023	a0001c0001 a0001c0002 a0001c0011 others(8): Show a0001c0001 a0001c0002 a0001c0011 a0001c0034 a0004c0010 a0004c0016 a0005c0005 a0006c0009 a0006c0033 a0009c0017 a0023c0028	a0001c0001t0001 a0001c0002t0001 a0001c0011t0001 others(8): Show a0001c0001t0001 a0001c0002t0001 a0001c0011t0001 a0001c0034t0001 a0004c0010t0001 a0004c0016t0001 a0005c0005t0002 a0006c0009t0002 a0006c0033t0002 a0009c0017t0001 a0023c0028t0001	a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0008 others(37): Show a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0028 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0064 a0001c0001t0001g0076 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0235 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0241 a0001c0001t0001g0243 a0001c0001t0001g0258 a0001c0001t0001g0263 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0002t0001g0043 a0001c0011t0001g0013 a0001c0011t0001g0042 a0001c0034t0001g0262 a0004c0010t0001g0071 a0004c0016t0001g0157 a0004c0016t0001g0264 a0005c0005t0002g0156 a0006c0009t0002g0016 a0006c0009t0002g0029 a0006c0009t0002g0234 a0006c0009t0002g0252 a0006c0033t0002g0260 a0009c0017t0001g0055 a0009c0017t0001g0261 a0023c0028t0001g0240	81	428	0.1893	-30	c.165 others(47): Show c.1656-471_1656-442delACACACACACACACACACACTCTCTCTC TC	LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16			chr3	TogoVar
LTF_chr3_46430645_46469905	46441926	AGAGAGAG others(23): Show AGAGAGAGAGTGTGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	HG03654.hp1 NA18970.hp2 HG03654.hp1 NA18970.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0016 a0001c0001 a0004c0016	a0001c0001t0001 a0004c0016t0001 a0001c0001t0001 a0004c0016t0001	a0001c0001t0001g0253 a0004c0016t0001g0158 a0001c0001t0001g0253 a0004c0016t0001g0158	2	428	0.0047	-30	c.165 others(47): Show c.1656-473_1656-444delACACACACACACACACACACACTCTCTC TC	LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16			chr3	TogoVar
LTF_chr3_46430645_46469905	46441934	AGTGTGTG others(23): Show AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	A A	intron_variant intron_variant	MODIFIER	NA18612.hp2 NA19058.hp2 NA18612.hp2 NA19058.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0049 a0001c0002t0001g0049	2	428	0.0047	-30	c.165 others(47): Show c.1656-481_1656-452delACACACACACACACACACACACACACAC AC	LTF	ENSG00000012223.13	transcript	ENST00000231751.9	protein_coding	13/16			chr3	TogoVar
LUC7L3_chr17_50714603_50761219	50729916	ATATATAT others(23): Show ATATATATATATATATATATATATATATATG	A A	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG00423.hp2 others(93): Show HG00408.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00735.hp1 HG00741.hp1 HG00741.hp2 HG01099.hp1 HG01167.hp1 HG01169.hp2 HG01192.hp1 HG01256.hp2 HG01258.hp1 HG01358.hp1 HG01891.hp1 HG01952.hp2 HG02027.hp1 HG02027.hp2 HG02056.hp2 HG02071.hp2 HG02074.hp1 HG02132.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp2 HG02258.hp1 HG02273.hp1 HG02451.hp2 HG02622.hp1 HG02698.hp1 HG02723.hp1 HG02738.hp1 HG02818.hp1 HG02895.hp1 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp1 HG03130.hp2 HG03139.hp1 HG03225.hp1 HG03239.hp1 HG03239.hp2 HG03486.hp2 HG03491.hp2 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03669.hp2 HG03710.hp1 HG03927.hp1 HG04115.hp1 HG04184.hp2 HG04199.hp2 HG04204.hp1 NA18522.hp1 NA18906.hp2 NA18939.hp2 NA18948.hp2 NA18952.hp1 NA18953.hp1 NA18954.hp2 NA18957.hp1 NA18957.hp2 NA18965.hp2 NA18967.hp1 NA18969.hp2 NA18971.hp2 NA18972.hp2 NA18974.hp2 NA18977.hp1 NA18977.hp2 NA18981.hp2 NA18984.hp1 NA18987.hp1 NA18988.hp2 NA18990.hp2 NA18991.hp2 NA18994.hp1 NA18999.hp1 NA19004.hp2 NA19005.hp2 NA19011.hp1 NA19043.hp2 NA19054.hp1 NA19058.hp1 NA19063.hp1 NA19064.hp2 NA19080.hp1 NA19081.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 others(14): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0036 a0001c0001t0042 a0001c0001t0046 a0001c0001t0048 a0001c0001t0050 a0001c0001t0055 a0001c0001t0062 a0001c0001t0063 a0002c0004t0051	a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0003 others(74): Show a0001c0001t0002g0001 a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0006 a0001c0001t0002g0025 a0001c0001t0002g0027 a0001c0001t0002g0041 a0001c0001t0002g0226 a0001c0001t0002g0231 a0001c0001t0002g0235 a0001c0001t0002g0236 a0001c0001t0002g0237 a0001c0001t0002g0240 a0001c0001t0002g0244 a0001c0001t0002g0251 a0001c0001t0002g0252 a0001c0001t0002g0255 a0001c0001t0002g0257 a0001c0001t0002g0264 a0001c0001t0002g0267 a0001c0001t0002g0268 a0001c0001t0002g0269 a0001c0001t0002g0271 a0001c0001t0002g0272 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0002g0279 a0001c0001t0002g0280 a0001c0001t0002g0282 a0001c0001t0002g0283 a0001c0001t0002g0286 a0001c0001t0002g0287 a0001c0001t0002g0288 a0001c0001t0002g0292 a0001c0001t0002g0293 a0001c0001t0002g0294 a0001c0001t0004g0233 a0001c0001t0007g0006 a0001c0001t0007g0011 a0001c0001t0007g0026 a0001c0001t0007g0238 a0001c0001t0007g0243 a0001c0001t0007g0253 a0001c0001t0007g0254 a0001c0001t0007g0256 a0001c0001t0007g0259 a0001c0001t0007g0270 a0001c0001t0011g0261 a0001c0001t0011g0262 a0001c0001t0011g0263 a0001c0001t0013g0006 a0001c0001t0013g0011 a0001c0001t0013g0234 a0001c0001t0014g0225 a0001c0001t0014g0227 a0001c0001t0014g0228 a0001c0001t0014g0229 a0001c0001t0014g0230 a0001c0001t0015g0242 a0001c0001t0015g0246 a0001c0001t0015g0247 a0001c0001t0015g0248 a0001c0001t0015g0275 a0001c0001t0017g0026 a0001c0001t0017g0265 a0001c0001t0017g0289 a0001c0001t0036g0278 a0001c0001t0042g0260 a0001c0001t0046g0266 a0001c0001t0048g0223 a0001c0001t0050g0002 a0001c0001t0055g0239 a0001c0001t0062g0258 a0001c0001t0063g0245 a0002c0004t0051g0284	96	392	0.2449	-30	c.100 others(47): Show c.100-7040_100-7011delATATATATATATATATATATATATATGT AT	LUC7L3	ENSG00000108848.16	transcript	ENST00000505658.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr17	TogoVar
LUZP2_chr11_24492053_25087638	24566564	ATATATCT others(23): Show ATATATCTATACACATATATATGTATGTGTG	A A	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02165.hp1 HG02523.hp2 others(3): Show HG02080.hp2 HG02165.hp1 HG02523.hp2 HG02683.hp2 HG02976.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 others(2): Show a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0001t0014 a0002c0002t0001	a0001c0001t0002g0019 a0001c0001t0002g0099 a0001c0001t0007g0015 others(3): Show a0001c0001t0002g0019 a0001c0001t0002g0099 a0001c0001t0007g0015 a0001c0001t0011g0107 a0001c0001t0014g0044 a0002c0002t0001g0009	6	116	0.0517	-30	c.62+ others(47): Show c.62+69265_62+69294delCTATACACATATATATGTATGTGTGTAT AT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24581670	AAAATATA others(23): Show AAAATATAAATATAAATATAAATATAAATAT	A A	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp2 HG02145.hp2 others(4): Show HG01891.hp1 HG01891.hp2 HG02145.hp2 HG02280.hp2 HG02559.hp1 HG02717.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 others(4): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0037 a0001c0003t0012 a0001c0003t0035	a0001c0001t0003g0024 a0001c0001t0004g0078 a0001c0001t0005g0029 others(4): Show a0001c0001t0003g0024 a0001c0001t0004g0078 a0001c0001t0005g0029 a0001c0001t0010g0037 a0001c0001t0037g0110 a0001c0003t0012g0111 a0001c0003t0035g0094	7	116	0.0603	-30	c.62+ others(47): Show c.62+84400_62+84429delATAAATATAAATATAAATATAAATATAA AT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24640957	GTATAGAT others(23): Show GTATAGATATAGATATAGATATAGATATAGA	G G	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00621.hp1 HG00621.hp2 others(52): Show HG00423.hp1 HG00621.hp1 HG00621.hp2 HG01071.hp2 HG01109.hp1 HG01261.hp2 HG01516.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG02080.hp1 HG02083.hp2 HG02129.hp2 HG02165.hp1 HG02258.hp2 HG02273.hp1 HG02280.hp1 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02683.hp2 HG02717.hp1 HG02896.hp1 HG02965.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03130.hp2 HG03209.hp1 HG03225.hp1 HG03225.hp2 HG03239.hp1 HG03453.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03540.hp2 HG03834.hp1 HG04204.hp1 HG04228.hp1 HG04228.hp2 NA18522.hp1 NA18612.hp1 NA18906.hp1 NA19070.hp1 NA19070.hp2 NA19240.hp2 NA20129.hp1 NA20752.hp2 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0005	a0001c0001 a0001c0003 a0002c0002 others(3): Show a0001c0001 a0001c0003 a0002c0002 a0002c0007 a0003c0004 a0005c0006	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(26): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0017 a0001c0001t0033 a0001c0001t0034 a0001c0001t0038 a0001c0001t0039 a0001c0003t0004 a0001c0003t0012 a0001c0003t0032 a0002c0002t0001 a0002c0002t0008 a0002c0002t0009 a0002c0002t0022 a0002c0002t0023 a0002c0002t0026 a0002c0002t0027 a0002c0007t0028 a0003c0004t0018 a0003c0004t0036 a0005c0006t0029	a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0019 others(52): Show a0001c0001t0002g0001 a0001c0001t0002g0003 a0001c0001t0002g0019 a0001c0001t0002g0059 a0001c0001t0002g0113 a0001c0001t0003g0024 a0001c0001t0003g0036 a0001c0001t0003g0041 a0001c0001t0003g0042 a0001c0001t0003g0084 a0001c0001t0003g0095 a0001c0001t0004g0060 a0001c0001t0004g0062 a0001c0001t0005g0029 a0001c0001t0005g0030 a0001c0001t0005g0101 a0001c0001t0005g0102 a0001c0001t0006g0047 a0001c0001t0007g0015 a0001c0001t0007g0103 a0001c0001t0010g0038 a0001c0001t0011g0054 a0001c0001t0011g0107 a0001c0001t0013g0039 a0001c0001t0013g0086 a0001c0001t0014g0002 a0001c0001t0014g0044 a0001c0001t0017g0018 a0001c0001t0033g0112 a0001c0001t0034g0053 a0001c0001t0038g0090 a0001c0001t0039g0034 a0001c0003t0004g0004 a0001c0003t0004g0055 a0001c0003t0012g0052 a0001c0003t0032g0056 a0002c0002t0001g0009 a0002c0002t0001g0011 a0002c0002t0001g0014 a0002c0002t0001g0057 a0002c0002t0001g0061 a0002c0002t0001g0074 a0002c0002t0001g0076 a0002c0002t0001g0083 a0002c0002t0001g0092 a0002c0002t0008g0021 a0002c0002t0009g0005 a0002c0002t0022g0017 a0002c0002t0023g0022 a0002c0002t0026g0010 a0002c0002t0027g0100 a0002c0007t0028g0068 a0003c0004t0018g0098 a0003c0004t0036g0070 a0005c0006t0029g0058	55	116	0.4741	-30	c.63- others(47): Show c.63-88183_63-88154delGATATAGATATAGATATAGATATAGATA TA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24857288	TACATATA others(23): Show TACATATATATATATACATATATATACACAC	T T	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01891.hp2 HG02145.hp2 others(12): Show HG01109.hp1 HG01891.hp2 HG02145.hp2 HG02258.hp2 HG02559.hp2 HG02717.hp1 HG02896.hp1 HG03041.hp1 HG03130.hp2 HG03453.hp1 HG03471.hp1 HG03579.hp2 NA18522.hp2 NA19043.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 others(1): Show a0001c0001 a0001c0003 a0002c0002 a0002c0007	a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 others(9): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0010 a0001c0001t0013 a0001c0003t0004 a0001c0003t0006 a0001c0003t0012 a0001c0003t0015 a0002c0002t0001 a0002c0002t0024 a0002c0007t0028	a0001c0001t0003g0036 a0001c0001t0003g0095 a0001c0001t0004g0078 others(12): Show a0001c0001t0003g0036 a0001c0001t0003g0095 a0001c0001t0004g0078 a0001c0001t0005g0029 a0001c0001t0005g0030 a0001c0001t0010g0037 a0001c0001t0013g0086 a0001c0003t0004g0004 a0001c0003t0004g0055 a0001c0003t0006g0077 a0001c0003t0012g0046 a0001c0003t0015g0091 a0002c0002t0001g0045 a0002c0002t0024g0089 a0002c0007t0028g0068	15	116	0.1293	-30	c.397 others(49): Show c.397-48699_397-48670delTATATATATATACATATATATACACA CACA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24931209	CAAAATAA others(23): Show CAAAATAAAATAAAATAAAATAAAATAAAAT	C C	intron_variant intron_variant	MODIFIER	HG02970.hp1 NA18612.hp1 HG02970.hp1 NA18612.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0039 a0002c0002t0001 a0001c0001t0039 a0002c0002t0001	a0001c0001t0039g0034 a0002c0002t0001g0076 a0001c0001t0039g0034 a0002c0002t0001g0076	2	116	0.0172	-30	c.522 others(49): Show c.522+16706_522+16735delTAAAATAAAATAAAATAAAATAAAAT AAAA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24996572	TTTTTATT others(23): Show TTTTTATTTTATTTTATTTTATTTTATTTTA	T T	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02165.hp2 HG02523.hp2 others(1): Show HG02080.hp1 HG02165.hp2 HG02523.hp2 NA18981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0007 a0001c0001t0007g0012 a0001c0001t0007g0015 others(1): Show a0001c0001t0007g0007 a0001c0001t0007g0012 a0001c0001t0007g0015 a0001c0001t0007g0103	4	116	0.0345	-30	c.765 others(49): Show c.765+13312_765+13341delTTATTTTATTTTATTTTATTTTATTT TATT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LY6L_chr8_143075630_143088486	143082971	AGGACGGT others(23): Show AGGACGGTGCCTCTGGTGTGGGTGATGGGAT	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00642.hp2 HG01106.hp1 HG01243.hp2 others(9): Show HG00642.hp2 HG01106.hp1 HG01243.hp2 HG01261.hp1 HG02258.hp1 HG02965.hp2 HG03139.hp1 HG03471.hp1 NA19030.hp2 NA19043.hp2 NA20805.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0005 a0001c0001t0007 a0001c0001t0022 others(1): Show a0001c0001t0005 a0001c0001t0007 a0001c0001t0022 a0002c0002t0013	a0001c0001t0005g0001 a0001c0001t0007g0020 a0001c0001t0022g0002 others(1): Show a0001c0001t0005g0001 a0001c0001t0007g0020 a0001c0001t0022g0002 a0002c0002t0013g0003	12	430	0.0279	-30	c.35 others(39): Show c.350_*379delTGGACGGTGCCTCTGGTGTGGGTGATGGGA	LY6L	ENSG00000261667.2	transcript	ENST00000562505.2	protein_coding	4/4	350	INFO_REALIGN_3_PRIME	chr8	TogoVar
LY6L_chr8_143075630_143088486	143083028	GGAAGGAC others(23): Show GGAAGGACGGTGCCTCTGGTGTGGGTGATGA	G G	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02886.hp2 NA18522.hp2 NA18906.hp1 others(1): Show HG02886.hp2 NA18522.hp2 NA18906.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0002 a0001c0001t0007g0002	4	430	0.0093	-30	c.39 others(39): Show c.393_*422delTGGTGTGGGTGATGAGAAGGACGGTGCCTC	LY6L	ENSG00000261667.2	transcript	ENST00000562505.2	protein_coding	4/4	393	INFO_REALIGN_3_PRIME	chr8	TogoVar
LY6L_chr8_143075630_143088486	143083058	AGAAGGAC others(23): Show AGAAGGACGGTGCCTCCGGTGTGGGTGATGG	A A	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0004 a0001c0001t0017g0004	1	430	0.0023	-30	c.41 others(39): Show c.418_*447delGCCTCCGGTGTGGGTGATGGGAAGGACGGT	LY6L	ENSG00000261667.2	transcript	ENST00000562505.2	protein_coding	4/4	418	INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55908998	TATATATA others(23): Show TATATATATATATACACACACACACACACAC	T T	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03834.hp2 HG02486.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0145 a0001c0001t0003g0146 a0001c0001t0003g0145 a0001c0001t0003g0146	2	288	0.0069	-30	c.-6+ others(47): Show c.-6+28897_-6+28926delTATATATATATACACACACACACACACA CA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar

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